Psyllid ID: psy3125
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 163 | ||||||
| 170042729 | 280 | defective proboscis extension response [ | 0.932 | 0.542 | 0.420 | 3e-35 | |
| 263359632 | 299 | hypothetical protein DVIR88_6g0005 [Dros | 0.490 | 0.267 | 0.740 | 1e-29 | |
| 195402167 | 165 | GJ12750 [Drosophila virilis] gi|19415589 | 0.490 | 0.484 | 0.740 | 3e-29 | |
| 347965484 | 322 | AGAP001201-PA [Anopheles gambiae str. PE | 0.503 | 0.254 | 0.698 | 5e-29 | |
| 195450678 | 1050 | GK13676 [Drosophila willistoni] gi|19416 | 0.533 | 0.082 | 0.663 | 6e-29 | |
| 189234546 | 299 | PREDICTED: similar to defective probosci | 0.490 | 0.267 | 0.716 | 1e-28 | |
| 345497009 | 313 | PREDICTED: netrin receptor DCC-like isof | 0.503 | 0.261 | 0.674 | 1e-28 | |
| 442614333 | 286 | dpr7, isoform G [Drosophila melanogaster | 0.766 | 0.437 | 0.503 | 1e-28 | |
| 328721700 | 261 | PREDICTED: lachesin-like isoform 2 [Acyr | 0.441 | 0.275 | 0.722 | 2e-28 | |
| 442614331 | 312 | dpr7, isoform F [Drosophila melanogaster | 0.766 | 0.400 | 0.503 | 2e-28 |
| >gi|170042729|ref|XP_001849067.1| defective proboscis extension response [Culex quinquefasciatus] gi|167866210|gb|EDS29593.1| defective proboscis extension response [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 12/164 (7%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V LG R VSW+R RD+H+LT YTYT D RF +H +++EW ++I YAQ++D+
Sbjct: 87 LVCKVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHTEEWTLRIRYAQRKDS 146
Query: 60 GIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI 119
GIYECQ++T P + + L V R + LLT YTYT D RF +
Sbjct: 147 GIYECQISTTPPIGHFVYLTVVSWVRHRDI-----------HLLTVGRYTYTSDQRFEAM 195
Query: 120 HPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDGK 163
H +++EW ++I YAQ++D+GIYECQ++T P + + L V G+
Sbjct: 196 HSPHTEEWTLRIRYAQRKDSGIYECQISTTPPIGHFVYLTVVGE 239
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Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|263359632|gb|ACY70468.1| hypothetical protein DVIR88_6g0005 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSV+HP NSD+W++KIDYAQ RD+
Sbjct: 71 LRCRVKNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVLHPPNSDDWDLKIDYAQARDS 130
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
GIYECQVNTEPK+N+AI L +
Sbjct: 131 GIYECQVNTEPKINLAITLEI 151
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Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195402167|ref|XP_002059678.1| GJ12750 [Drosophila virilis] gi|194155892|gb|EDW71076.1| GJ12750 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSV+HP NSD+W++KIDYAQ RD+
Sbjct: 31 LRCRVKNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVLHPPNSDDWDLKIDYAQARDS 90
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
GIYECQVNTEPK+N+AI L +
Sbjct: 91 GIYECQVNTEPKINLAITLEI 111
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Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347965484|ref|XP_321956.5| AGAP001201-PA [Anopheles gambiae str. PEST] gi|333470490|gb|EAA01704.5| AGAP001201-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILT+NIYTYTGD RFSVIHP +SD+W++KI+YAQ++D+
Sbjct: 23 LKCRVKHKGDRTVSWMRKRDLHILTSNIYTYTGDQRFSVIHPPDSDDWDLKIEYAQQKDS 82
Query: 60 GIYECQVNTEPKMNMAIMLNVDD 82
GIYECQVNTEPK+N+A+ L+V D
Sbjct: 83 GIYECQVNTEPKINLAVYLDVTD 105
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Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195450678|ref|XP_002072585.1| GK13676 [Drosophila willistoni] gi|194168670|gb|EDW83571.1| GK13676 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/92 (66%), Positives = 76/92 (82%), Gaps = 5/92 (5%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSVIHP ++++W++KIDYAQ+RD+
Sbjct: 853 LRCRVRNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVIHPPSTEDWDLKIDYAQQRDS 912
Query: 60 GIYECQVNTEPKMNMAIMLNV----DDRGRGA 87
G+YECQVNTEPK+N+AIML + D+R G+
Sbjct: 913 GVYECQVNTEPKINLAIMLEITAESDNRDGGS 944
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Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189234546|ref|XP_001815475.1| PREDICTED: similar to defective proboscis extension response [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Query: 3 CTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V G R VSWMRKRDLHILT++I+TYTGDARFSV HP++SD+W+++I Y QKRDAG+
Sbjct: 72 CRVKHPGDRRVSWMRKRDLHILTSDIHTYTGDARFSVRHPEHSDDWDLRIAYVQKRDAGV 131
Query: 62 YECQVNTEPKMNMAIMLNVDD 82
YECQVNTEPK+N+AI LNV+D
Sbjct: 132 YECQVNTEPKINLAITLNVED 152
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Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345497009|ref|XP_003427878.1| PREDICTED: netrin receptor DCC-like isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++C V G R +SWMRKRDLHILT+++YTYTGDARFSV HP+ SDEW +KI Y Q RDA
Sbjct: 77 LSCHVKHPGDRTISWMRKRDLHILTSSVYTYTGDARFSVSHPETSDEWKLKIAYVQPRDA 136
Query: 60 GIYECQVNTEPKMNMAIMLNVDD 82
GIYECQ+NTEPK+N+A ML V++
Sbjct: 137 GIYECQINTEPKLNLAFMLRVEE 159
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442614333|ref|NP_001096851.2| dpr7, isoform G [Drosophila melanogaster] gi|440218132|gb|ABV53592.2| dpr7, isoform G [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 92/149 (61%), Gaps = 24/149 (16%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSVIHP S++W++KIDYAQ RD+
Sbjct: 45 LRCRVKNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVIHPPGSEDWDLKIDYAQPRDS 104
Query: 60 GIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI 119
G+YECQVNTEPK+N+AI L V + + F DL T + T AR ++
Sbjct: 105 GVYECQVNTEPKINLAICLQV-------------IADNDFQDLKTKKRFYDTKSARAKIL 151
Query: 120 HPQNSDEWNMKIDYAQKRDAGI-YECQVN 147
S E ++ KRD+ I C VN
Sbjct: 152 ---GSTEIHV------KRDSTIALACSVN 171
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Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328721700|ref|XP_003247378.1| PREDICTED: lachesin-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 68/72 (94%)
Query: 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
R VSWMRKRDLHILT++I+TYTGD RFSV+HP+NS++W++K+++ QKRDAGIYECQVNTE
Sbjct: 53 RTVSWMRKRDLHILTSSIHTYTGDGRFSVVHPENSEQWDLKVEFVQKRDAGIYECQVNTE 112
Query: 70 PKMNMAIMLNVD 81
PK+N+A+ LNV+
Sbjct: 113 PKINLAVQLNVE 124
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442614331|ref|NP_001096850.2| dpr7, isoform F [Drosophila melanogaster] gi|440218131|gb|ABV53591.2| dpr7, isoform F [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 92/149 (61%), Gaps = 24/149 (16%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSVIHP S++W++KIDYAQ RD+
Sbjct: 71 LRCRVKNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVIHPPGSEDWDLKIDYAQPRDS 130
Query: 60 GIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI 119
G+YECQVNTEPK+N+AI L V + + F DL T + T AR ++
Sbjct: 131 GVYECQVNTEPKINLAICLQV-------------IADNDFQDLKTKKRFYDTKSARAKIL 177
Query: 120 HPQNSDEWNMKIDYAQKRDAGI-YECQVN 147
S E ++ KRD+ I C VN
Sbjct: 178 ---GSTEIHV------KRDSTIALACSVN 197
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Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 163 | ||||||
| FB|FBgn0053481 | 312 | dpr7 "dpr7" [Drosophila melano | 0.490 | 0.256 | 0.728 | 4.8e-31 | |
| FB|FBgn0053512 | 323 | dpr4 "dpr4" [Drosophila melano | 0.478 | 0.241 | 0.582 | 2.1e-23 | |
| FB|FBgn0261871 | 457 | dpr2 [Drosophila melanogaster | 0.478 | 0.170 | 0.6 | 6.1e-23 | |
| FB|FBgn0037908 | 336 | dpr5 "dpr5" [Drosophila melano | 0.478 | 0.232 | 0.607 | 1.1e-22 | |
| FB|FBgn0052600 | 344 | dpr8 "dpr8" [Drosophila melano | 0.490 | 0.232 | 0.469 | 6e-22 | |
| FB|FBgn0053516 | 522 | dpr3 "dpr3" [Drosophila melano | 0.582 | 0.181 | 0.489 | 5.3e-21 | |
| FB|FBgn0040726 | 367 | dpr "defective proboscis exten | 0.478 | 0.212 | 0.556 | 3.4e-20 | |
| FB|FBgn0040823 | 283 | dpr6 "dpr6" [Drosophila melano | 0.490 | 0.282 | 0.493 | 1.9e-19 | |
| FB|FBgn0038282 | 602 | dpr9 "dpr9" [Drosophila melano | 0.478 | 0.129 | 0.506 | 6.7e-19 | |
| FB|FBgn0052057 | 408 | dpr10 "dpr10" [Drosophila mela | 0.503 | 0.200 | 0.481 | 1.5e-18 |
| FB|FBgn0053481 dpr7 "dpr7" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 59/81 (72%), Positives = 68/81 (83%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G R VSWMRKRDLHILTTNIYTYTGD RFSVIHP S++W++KIDYAQ RD+
Sbjct: 71 LRCRVKNKGNRTVSWMRKRDLHILTTNIYTYTGDQRFSVIHPPGSEDWDLKIDYAQPRDS 130
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G+YECQVNTEPK+N+AI L V
Sbjct: 131 GVYECQVNTEPKINLAICLQV 151
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| FB|FBgn0053512 dpr4 "dpr4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 46/79 (58%), Positives = 55/79 (69%)
Query: 3 CTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V LG R VSW+RKRDLHILT I TYT D RF +H + SDEW ++I Q RD+G
Sbjct: 67 CRVRNLGDRAVSWIRKRDLHILTVGILTYTNDQRFQSLHSEGSDEWTLRISSPQPRDSGT 126
Query: 62 YECQVNTEPKMNMAIMLNV 80
YECQV+TEPK++ LNV
Sbjct: 127 YECQVSTEPKISQGFRLNV 145
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| FB|FBgn0261871 dpr2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 48/80 (60%), Positives = 58/80 (72%)
Query: 3 CTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFS-VIHPQNSDEWNMKIDYAQKRDAG 60
C V LG + VSW+RKRDLHILT I TYT D RF V+ +S +W + + YAQ RD+G
Sbjct: 128 CRVDNLGDKSVSWIRKRDLHILTAGILTYTSDERFKQVVRTADSKDWTLHVKYAQPRDSG 187
Query: 61 IYECQVNTEPKMNMAIMLNV 80
IYECQVNTEPK++MA LNV
Sbjct: 188 IYECQVNTEPKISMAFRLNV 207
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| FB|FBgn0037908 dpr5 "dpr5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 48/79 (60%), Positives = 57/79 (72%)
Query: 3 CTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V LG R VSW+R+RDLHILT I TYT D RF H NSDEW +KI Q+RDAG+
Sbjct: 112 CRVRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARHIDNSDEWVLKIVSVQQRDAGV 171
Query: 62 YECQVNTEPKMNMAIMLNV 80
YECQV+TEPK+++A L V
Sbjct: 172 YECQVSTEPKISLAYKLVV 190
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| FB|FBgn0052600 dpr8 "dpr8" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V LG R VSW+R RD+H+LT YTYT D RF +H ++++W ++I YAQ++D+
Sbjct: 62 LTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHAEDWTLRIRYAQRKDS 121
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
GIYECQ++T P + ++ LN+
Sbjct: 122 GIYECQISTTPPIGHSVYLNI 142
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| FB|FBgn0053516 dpr3 "dpr3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 48/98 (48%), Positives = 62/98 (63%)
Query: 3 CTVMGL-GRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V L + VSW+RKRDLHILT TYT D RF V ++S EW + + +D+GI
Sbjct: 259 CRVDSLHDKSVSWIRKRDLHILTVGTATYTSDKRFQVTESKDSREWTLHVKAPLAKDSGI 318
Query: 62 YECQVNTEPKMNMAIMLNVDDRGRGAR--LSAGPLLNF 97
YECQVNTEPKM+MA LN+ + A+ +S P L+F
Sbjct: 319 YECQVNTEPKMSMAFQLNIIEISPDAKAVISGPPDLHF 356
|
|
| FB|FBgn0040726 dpr "defective proboscis extension response" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 44/79 (55%), Positives = 55/79 (69%)
Query: 3 CTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V LG + VSW+RKRDLHILT TYT D RF V+ P S W ++I Y Q RD+G+
Sbjct: 75 CRVERLGDKDVSWIRKRDLHILTAGGTTYTSDQRFQVLRPDGSANWTLQIKYPQPRDSGV 134
Query: 62 YECQVNTEPKMNMAIMLNV 80
YECQ+NTEPKM+++ NV
Sbjct: 135 YECQINTEPKMSLSYTFNV 153
|
|
| FB|FBgn0040823 dpr6 "dpr6" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 40/81 (49%), Positives = 58/81 (71%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++C V L + VSW+R RD+HILT YTYT D RF H Q++++W ++I +AQKRDA
Sbjct: 93 LSCRVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDA 152
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G+YECQ++T+P + + LNV
Sbjct: 153 GMYECQISTQPVRSYFVRLNV 173
|
|
| FB|FBgn0038282 dpr9 "dpr9" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 42/83 (50%), Positives = 53/83 (63%)
Query: 3 CTVMGLGRP-----VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
C V LG VSW+R RD+H+LT YTYT D RF IH +++W ++I Y Q R
Sbjct: 278 CRVKNLGNKTMLLQVSWVRHRDIHLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHR 337
Query: 58 DAGIYECQVNTEPKMNMAIMLNV 80
D+GIYECQV+T P M+ I LNV
Sbjct: 338 DSGIYECQVSTTPHMSHYIHLNV 360
|
|
| FB|FBgn0052057 dpr10 "dpr10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V LG + V+W+R RDLHILT YTYT D RF + ++ DEW ++I +AQ+RDA
Sbjct: 73 LGCRVKHLGNKTVAWIRHRDLHILTVGTYTYTTDQRFQTSYHRDIDEWTLQIKWAQQRDA 132
Query: 60 GIYECQVNTEPKMNMAIMLNVDD 82
G+YECQ++T+P + ++ LN+ D
Sbjct: 133 GVYECQISTQPVRSYSVNLNIVD 155
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 163 | |||
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 9e-04 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 0.002 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 0.002 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 0.002 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 9e-04
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 3 CTVMGL--GRPVSWMRKRDLHILTTNIYTYTGDA----------RFSVIHPQNSDEWNMK 50
C+ V W ++ I+ T R ++ + +++++
Sbjct: 23 CSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGSKNDFSLT 82
Query: 51 IDYAQKRDAGIYECQVNTEPKMNM 74
I + D+G Y C V+ ++
Sbjct: 83 ISNLRLSDSGTYTCAVSNPNELVF 106
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P V+W ++ + RFSV + + I D+G
Sbjct: 16 CEASGSPPPEVTWYKQGGKLLAE--------SGRFSVSR--SGSTSTLTISNVTPEDSGT 65
Query: 62 YECQVNTEPKM 72
Y C
Sbjct: 66 YTCAATNSSGS 76
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P V+W ++ + RFSV + + I D+G
Sbjct: 16 CEASGSPPPEVTWYKQGGKLLAE--------SGRFSVSR--SGSTSTLTISNVTPEDSGT 65
Query: 62 YECQVNTEPKM 72
Y C
Sbjct: 66 YTCAATNSSGS 76
|
Length = 85 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.002
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
CTV G P VSW K + RF V + + + I Q D G
Sbjct: 22 CTVTGDPDPTVSW-FKDGQPL--------RSSDRFKVTYEGGTYT--LTISNVQPDDEGK 70
Query: 62 YECQV 66
Y C
Sbjct: 71 YTCVA 75
|
Length = 90 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| KOG3513|consensus | 1051 | 99.84 | ||
| KOG3513|consensus | 1051 | 99.83 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.81 | |
| KOG4194|consensus | 873 | 99.73 | ||
| KOG4221|consensus | 1381 | 99.7 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.65 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.63 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.63 | |
| KOG4194|consensus | 873 | 99.61 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.61 | |
| KOG4221|consensus | 1381 | 99.6 | ||
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.59 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.56 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.56 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.54 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 99.53 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.52 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.52 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.52 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.52 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.51 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.5 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.5 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.48 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.47 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.47 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.47 | |
| KOG4222|consensus | 1281 | 99.47 | ||
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.47 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.47 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.46 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.45 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.44 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.44 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.44 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.43 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.43 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.42 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.42 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.42 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.42 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.42 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.42 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.41 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.41 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.41 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.4 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.4 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.4 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.4 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.39 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.39 | |
| KOG4222|consensus | 1281 | 99.38 | ||
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.38 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.38 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.37 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.36 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.36 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.35 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.35 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.35 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.35 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.35 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.33 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.32 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.32 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.32 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.32 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.32 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.31 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.31 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.3 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.28 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.27 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.24 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 99.24 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.24 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.23 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.23 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.23 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.22 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 99.21 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.21 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.21 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.2 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.19 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.18 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.18 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.18 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 99.18 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.17 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.17 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.17 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.16 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.16 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 99.16 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 99.16 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.16 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.16 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.16 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.16 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.15 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.15 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.15 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.15 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.14 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.14 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.14 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.14 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.14 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 99.14 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.13 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.12 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.12 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 99.12 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.12 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.12 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.11 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.11 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.11 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.11 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.11 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 99.1 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.1 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.1 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.09 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 99.09 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 99.09 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.09 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.09 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.08 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.08 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.08 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.07 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.07 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.07 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 99.07 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.06 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.06 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.06 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.05 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.05 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.04 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.04 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.04 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.04 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 99.03 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.03 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.02 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.02 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 99.02 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 99.02 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 99.01 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.01 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.0 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 98.99 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.99 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.98 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.98 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 98.98 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.98 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 98.97 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 98.97 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.97 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.97 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 98.96 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 98.96 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 98.96 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.96 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 98.96 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.96 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.95 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.95 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 98.94 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 98.94 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 98.93 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.93 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 98.92 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.9 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.89 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.89 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.88 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 98.88 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.88 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 98.87 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.87 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.87 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.86 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.86 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.86 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.86 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.86 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.85 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.85 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.85 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.85 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.84 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 98.84 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 98.84 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 98.83 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.83 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 98.81 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 98.81 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 98.81 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 98.8 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.79 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 98.79 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.79 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.77 | |
| PHA03376 | 221 | BARF1; Provisional | 98.77 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 98.77 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.76 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.76 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.76 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.75 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 98.74 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.74 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.73 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.72 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.7 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 98.69 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 98.67 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.65 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.65 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.65 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 98.64 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.63 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.63 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 98.63 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.61 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.61 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.61 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 98.6 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.6 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.59 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.58 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 98.57 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.56 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.55 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.53 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.52 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.5 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.49 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.49 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.49 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.48 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.48 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.46 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.45 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.45 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.44 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.43 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.43 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.42 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.42 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.41 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.39 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.38 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.38 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.37 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.36 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.36 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 98.35 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 98.34 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.33 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.33 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.33 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.32 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.32 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 98.3 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.29 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.29 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.28 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.28 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.27 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.25 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.25 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.24 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.24 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.22 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 98.21 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.21 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.19 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.19 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.17 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.17 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.13 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.13 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.11 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.07 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.0 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.98 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 97.94 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.94 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.92 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.91 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.91 | |
| KOG3515|consensus | 741 | 97.88 | ||
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.87 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.85 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 97.75 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.71 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.67 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.66 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.66 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 97.5 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.36 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.36 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.35 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.3 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.21 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 97.11 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.08 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 97.07 | |
| PHA03376 | 221 | BARF1; Provisional | 97.03 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.98 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 96.84 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.84 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 96.83 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.81 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 96.8 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.7 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 96.68 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.62 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 96.58 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 96.54 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 96.53 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.53 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 96.51 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 96.42 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 96.4 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 96.37 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 95.94 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 95.82 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 95.78 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 95.68 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 95.3 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.27 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 95.16 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 95.04 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 94.99 | |
| KOG4597|consensus | 560 | 94.96 | ||
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 94.7 | |
| KOG3515|consensus | 741 | 94.62 | ||
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 94.61 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 94.42 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 94.33 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 94.05 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 94.04 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 93.82 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 92.96 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 92.84 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 91.82 | |
| KOG1480|consensus | 909 | 90.57 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 89.72 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 89.48 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 89.02 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 88.41 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 88.27 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 87.32 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 87.31 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 86.13 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 85.97 | |
| PF01688 | 161 | Herpes_gI: Alphaherpesvirus glycoprotein I; InterP | 85.46 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 84.84 | |
| KOG4597|consensus | 560 | 83.12 | ||
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 82.96 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 80.17 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=142.55 Aligned_cols=145 Identities=20% Similarity=0.319 Sum_probs=113.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.. ...++|+.+.. ..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 351 ~eC~a~g~P~p~v~Wlk--Ng~pl~~----~~r~~~~~i~~------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 351 LECKASGKPNPTVKWLK--NGEPLEP----AERDPRYKIDD------GTLIISNVQESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred EEEEecCCCCCceEEee--CCeecCc----cCCCcceEEeC------CEEEEEecccccCeEEEeeeecccceEeeeeEE
Confidence 579999999 9999998 5554431 12456688774 46999999999999999999 567788889999
Q ss_pred EEEcCCCc---------eEeeCCCeEEEecC--CCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCee
Q psy3125 79 NVDDRGRG---------ARLSAGPLLNFAFP--DLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~~~---------~~v~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|+...+. ..+..|..+.+.|. ..+.+...|...+. |+.+.. ..+|.|.+++++|+|.
T Consensus 419 ~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e-----dGtL~I~n~t~~DaG~ 493 (1051)
T KOG3513|consen 419 KVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE-----DGTLEISNVTRSDAGK 493 (1051)
T ss_pred EEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC-----CCcEEecccCcccCcE
Confidence 99976221 23445677888886 34567788877765 333332 4459999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |..|.+...+.|.|+.
T Consensus 494 YtC~A~N~~G~a~~~~~L~Vkd 515 (1051)
T KOG3513|consen 494 YTCVAENKLGKAESTGNLIVKD 515 (1051)
T ss_pred EEEEEEcccCccceEEEEEEec
Confidence 99999 9999999999999975
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-20 Score=145.54 Aligned_cols=148 Identities=19% Similarity=0.270 Sum_probs=115.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
+.|...+.| +.+.|.| +...+...+|+.+.. +++|.|.+++++|+|.|+|.+ |..++.....+|
T Consensus 446 i~C~~~asP~p~~~W~k---------~~~~~~~~~r~~i~e-----dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L 511 (1051)
T KOG3513|consen 446 IDCKPFASPKPKVSWLK---------GGEKLLQSGRIRILE-----DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNL 511 (1051)
T ss_pred EeeccCCCCcceEEEEc---------CCcccccCceEEECC-----CCcEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence 579999999 9999998 222344578998875 678999999999999999999 667888999999
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC----CCceeEEEEeCCCeEEEecCC-------CCceEEEEecccCcCCCee
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD----LLTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~ 141 (163)
.|.+++ ....+..|..+.+.|.. .+.....|..++.-+.+.... ..+...|+|.+++..|+|.
T Consensus 512 ~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~ 591 (1051)
T KOG3513|consen 512 IVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGK 591 (1051)
T ss_pred EEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCce
Confidence 998763 44456678899999964 456778898877644433211 1122569999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.|+| ...-+++..+.|.|+|
T Consensus 592 Y~C~aqT~~Ds~s~~A~l~V~g 613 (1051)
T KOG3513|consen 592 YTCVAQTALDSASARADLLVRG 613 (1051)
T ss_pred EEEEEEEeecchhcccceEEec
Confidence 99999 5556888888888876
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=121.39 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=76.3
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCceEeeCCCeEEEecCCC-------CceeEEEEeCCCeEE
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDL-------LTTNIYTYTGDARFS 117 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 117 (163)
+.+|.|.+++.+|+|.|.|++.+ .......+.|.|..+.....+..|..+.+.|... +.+.+.|++++..+.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 56899999999999999999954 4455667778887665556677889999999743 357889999876543
Q ss_pred EecC--CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 118 VIHP--QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 118 ~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.... .......|.|.+++.+|+|.|+|.|
T Consensus 177 ~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a 207 (227)
T PHA02826 177 YTDRIQLRNNNSTLVIKSATHDDSGIYTCNL 207 (227)
T ss_pred CCCCEEEeCCCCEEEECcCCHHhCEEEEEEE
Confidence 1110 0012346999999999999999999
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=119.97 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=114.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.++|.| |.|.|.|....... .....|.++..+ +-.+-|.||..+|.|.|+|.+ +..+..+..++|
T Consensus 632 l~CaAtG~P~PeIawqkdggtdFP------AA~eRRl~Vmpe----dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL 701 (873)
T KOG4194|consen 632 LECAATGHPRPEIAWQKDGGTDFP------AARERRLHVMPE----DDVFFITNVKIEDQGIYTCTAQNVAGQISANATL 701 (873)
T ss_pred eeeeccCCCCcceeehhcCCCCCc------hhhhheeeecCC----CCEEEEecccccccceeEEeeeccccceeeceEE
Confidence 679999999 99999984322111 123557776653 335899999999999999999 567888999999
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--C-CceeEEEEeCCCeEEEec--CCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--L-LTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.|.+-| +...|..|....+.|.. . ..+...|++.++-+.+.. +.....--|.+++...+|+|.|+|..
T Consensus 702 ~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~ 781 (873)
T KOG4194|consen 702 TVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMS 781 (873)
T ss_pred EEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEE
Confidence 999764 33456678888888853 2 337889999988777664 44556677999999999999999999
Q ss_pred CCCCCccEEEEEEEe
Q psy3125 147 NTEPKMNMAIMLNVD 161 (163)
Q Consensus 147 ~~~~~~~~~~~L~V~ 161 (163)
++.+.-...+.|.|.
T Consensus 782 ~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 782 NTLGTERIHICLLVY 796 (873)
T ss_pred eeccceeeEEEEEEe
Confidence 887777666666654
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=124.72 Aligned_cols=148 Identities=19% Similarity=0.271 Sum_probs=108.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|.|.+ .++ ..++|+.++. +..|.|.+++.+|.|.|.|.+... ...+..+.
T Consensus 160 f~c~vn~e~~p~i~w~kn~-~pl--------~~~~r~i~lp-----sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ 225 (1381)
T KOG4221|consen 160 FSCEVNAEPVPTIMWLKND-QPL--------PLDSRVIVLP-----SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAE 225 (1381)
T ss_pred EEEEEcCccCceeEEeccc-ccc--------cCCCcEEEcC-----CCcEEecccccCCCceEEEEEecCCcCCccceeE
Confidence 689999988 889998732 212 2356777765 456999999999999999999542 23456666
Q ss_pred EEEEc------------CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCee
Q psy3125 78 LNVDD------------RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 78 l~V~~------------~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~ 141 (163)
|+|.. .+....+..|..+.++|. ..+.+.+.|.+++..+...... -.....|.|++++..|+|.
T Consensus 226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~ 305 (1381)
T KOG4221|consen 226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGK 305 (1381)
T ss_pred EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCce
Confidence 77662 234456677889999996 4567899999977655443210 0123459999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |+.-....++.|.|..
T Consensus 306 YtC~Atn~~D~idasaev~V~a 327 (1381)
T KOG4221|consen 306 YTCRATNTNDSIDASAEVTVLA 327 (1381)
T ss_pred EEEEecCCCcccccceEEEEEc
Confidence 99999 8777777778887764
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=108.53 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=89.8
Q ss_pred CceEE-----ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee
Q psy3125 1 MACTV-----MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~-----~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~ 73 (163)
|.|.+ .|.| +.|.|+|.+.. ..|..... +...|.|.++..+|+|.|+|.+.+ .+...
T Consensus 46 l~C~~~~~~~~g~p~~~i~W~K~g~~------------~~~~~~~~----~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~ 109 (326)
T PHA02785 46 LPCPQINTLSSGYNILDILWEKRGAD------------NDRIIPID----NGSNMLILNPTQSDSGIYICITKNETYCDM 109 (326)
T ss_pred EECCCccccccCCCCceEEEEECCCc------------cceEEEcc----CCceEEEcccCcccCeEEEEEEECCCcceE
Confidence 46876 5778 99999983210 11211111 223588999999999999999954 34455
Q ss_pred EEEEEEEEcCCC--------ceEeeCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCC
Q psy3125 74 MAIMLNVDDRGR--------GARLSAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 74 ~~~~l~V~~~~~--------~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
..+.|+|....+ ...+..|....+.|.. .+.+.+.|+... ..............|.|.+++.+|
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence 667777765421 1234466778888862 345678886543 111000000112469999999999
Q ss_pred CeeEEEEc-CCCCCcc----EEEEEEEe
Q psy3125 139 AGIYECQV-NTEPKMN----MAIMLNVD 161 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~----~~~~L~V~ 161 (163)
+|.|+|.| +..+... ..+.|.|.
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 99999999 7666543 34455554
|
|
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=85.97 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=53.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 l~C~v~G~P~P~i~W~k--~~~~i~------~~~~r~~~~~~-~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 3 LECQISAIPPPKIFWKR--NNEMVQ------YNTDRISLYQD-NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred EEEEEEecCCCeEEEEE--CCEECc------CCCCeEEEEEc-CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 689999999 9999998 332221 12357777653 234468999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (75)
T cd05892 74 DV 75 (75)
T ss_pred eC
Confidence 65
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=88.96 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=61.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.| +.|.|+|. +..++.++......++|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.+..+..+.|.
T Consensus 17 L~C~v~g~~~~~v~W~k~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~ 94 (95)
T cd05882 17 LKCGVKEHDNSSLQWSNT-AQQTLYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVT 94 (95)
T ss_pred EEEEEeCCCCCeEEEecc-CccEEEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence 689999999 99999984 33455566666667889987653 2457999999999999999999998766666666554
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd05882 95 V 95 (95)
T ss_pred C
Confidence 3
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=110.24 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=105.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-e---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCC-C
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-T---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEP-K 71 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~-~ 71 (163)
|.|.+.++. -.+.|.|.+. ++. . +...+....|.....+.......|++.||.-.|.|.|+|.+. ..+ .
T Consensus 523 ftC~a~sssasplsi~WR~dne--vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGSt 600 (873)
T KOG4194|consen 523 FTCNAYSSSASPLSIEWRKDNE--VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGST 600 (873)
T ss_pred EEEEeccCCCCCceeEeeeccc--cCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcc
Confidence 578888754 6888987432 221 0 001111111111111111235579999999999999999994 333 4
Q ss_pred eeEEEEEEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCe-EEEecC----CCCceEEEEecccCcCC
Q psy3125 72 MNMAIMLNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-FSVIHP----QNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 72 ~~~~~~l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~----~~~~~~~L~i~~v~~~D 138 (163)
.+.++.|+|... |....+..|....+.|.. .+.+.+.|-+.++. |....+ --...-.+.|.+|+.+|
T Consensus 601 ysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD 680 (873)
T KOG4194|consen 601 YSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIED 680 (873)
T ss_pred hhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccc
Confidence 677778888765 455678888889999964 56678888766542 321110 00122348999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|+|.| |..|..+.+++|.|-.
T Consensus 681 ~GiYtC~A~n~AG~isanAtL~V~e 705 (873)
T KOG4194|consen 681 QGIYTCTAQNVAGQISANATLTVLE 705 (873)
T ss_pred cceeEEeeeccccceeeceEEEEec
Confidence 99999999 9999999999999864
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=103.01 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=84.2
Q ss_pred cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe----eEEEEEEE
Q psy3125 7 GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM----NMAIMLNV 80 (163)
Q Consensus 7 ~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~----~~~~~l~V 80 (163)
+.+ +.|.|.| +..+ .+.|+.... +..|.|.+++.+|+|.|+|.+.+ .+.. ...+.|.|
T Consensus 152 ~~~~~~i~W~k--~~~~---------~~~r~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V 215 (326)
T PHA02785 152 SNVNADIIWSG--HRRL---------RNKRLKQRT-----PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEV 215 (326)
T ss_pred CCCCceEEEcc--CCcc---------CCcceEecC-----CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEE
Confidence 456 8999976 2211 234555432 34799999999999999999943 3322 23445666
Q ss_pred EcC--------CCceEeeCCCeEEEecCCC--Cc---eeEEEEeCCCeE-----------EEecCCC------CceEEEE
Q psy3125 81 DDR--------GRGARLSAGPLLNFAFPDL--LT---TNIYTYTGDARF-----------SVIHPQN------SDEWNMK 130 (163)
Q Consensus 81 ~~~--------~~~~~v~~~~~~~~~~~~~--~~---~~~~~~~~~~~~-----------~~~~~~~------~~~~~L~ 130 (163)
..+ +....+..|..+.+.|... +. ..+.|..++..+ ....... .....|+
T Consensus 216 ~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 295 (326)
T PHA02785 216 RDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLN 295 (326)
T ss_pred eccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEE
Confidence 532 2223445688899999643 11 357888775432 1111110 1135699
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
|.+++.+|+|.|+|.| |.. +.+..++
T Consensus 296 I~~V~~~D~G~Y~C~A~n~~-~~~~~~~ 322 (326)
T PHA02785 296 INPVKEEDATTFTCMAFTIP-SISKTVT 322 (326)
T ss_pred ECCcchhcCeeeEEEEEecc-CceEeee
Confidence 9999999999999999 554 5554444
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=116.15 Aligned_cols=147 Identities=21% Similarity=0.314 Sum_probs=107.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|+|.+.+.| +.|.|+| ++..+.++. -|+.+.. ..+|.|.+++..|+|.|+|.+ ++.......+.|
T Consensus 257 leCvvs~~p~p~v~Wlr--ng~~i~~ds------~rivl~g-----~~slliS~a~~~dSg~YtC~Atn~~D~idasaev 323 (1381)
T KOG4221|consen 257 LECVVSGVPKPSVKWLR--NGEKISVDS------YRIVLVG-----GSSLLISNATDDDSGKYTCRATNTNDSIDASAEV 323 (1381)
T ss_pred EEEEecCCCCCceEEee--CCeeeeecc------eEEEEec-----ccceEEeccccccCceEEEEecCCCcccccceEE
Confidence 689999999 9999999 544444322 3555553 446999999999999999999 556677788889
Q ss_pred EEEcCCC------ceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 79 NVDDRGR------GARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 79 ~V~~~~~------~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
+|+.++. ......+..+.+.|. ..+.+.+.|++++.+..-.... -.....|+|-.+-..|.|.|+|.+ |.
T Consensus 324 ~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 324 TVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAEND 403 (1381)
T ss_pred EEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccC
Confidence 9988742 223344677888886 3467899999988755322100 011112899999999999999999 88
Q ss_pred CCCccEEEEEEE
Q psy3125 149 EPKMNMAIMLNV 160 (163)
Q Consensus 149 ~~~~~~~~~L~V 160 (163)
.|.+...+.|.|
T Consensus 404 ~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 404 AGSAQAAAQLEV 415 (1381)
T ss_pred cccccchhhhee
Confidence 899988887754
|
|
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-15 Score=84.42 Aligned_cols=66 Identities=26% Similarity=0.439 Sum_probs=51.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| +...+ ..+.|+.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~~~g~P~p~v~W~k--~~~~l-------~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 6 IECKPKAAPKPKFSWSK--GTELL-------VNNSRISIWD-----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred EEEecceeCCCEEEEEe--CCEec-------ccCCCEEEcC-----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 689999999 9999998 32222 2356777754 347999999999999999999 556677777776
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 72 ~~ 73 (73)
T cd05852 72 SV 73 (73)
T ss_pred EC
Confidence 64
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=82.02 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=51.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~C~v~G~P~P~v~W~k--~~~~l~------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 3 LECRVSGVPHPQIFWKK--ENESLT------HNTDRVSMHQD-NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred EEEEEeEecCCEEEEEE--CCEECC------CCCCeEEEEEc-CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 9999998 322221 12357776542 123347999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 64
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=84.61 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=58.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+ ..+.|+.+... .....|.|.++.++|+|.|+|.+ |..+.....+.|
T Consensus 20 l~C~~~G~p~p~v~W~k--dg~~l-------~~~~~~~~~~~--~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l 88 (98)
T cd05762 20 LFCKVTGTQPITCTWMK--FRKQI-------QEGEGIKIENT--ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL 88 (98)
T ss_pred EEEEEcccCCCceEEEE--CCEEe-------cCCCcEEEEec--CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence 689999999 9999998 33332 23456666642 24678999999999999999999 567788889999
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|.+.+.
T Consensus 89 ~V~~~P~ 95 (98)
T cd05762 89 TVVDKPD 95 (98)
T ss_pred EEecCCC
Confidence 9988754
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=79.87 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.+.|+| ++..+ ..++|+.+.. .....+|.|.++..+|+|.|+|.+ |..+..+..+.|
T Consensus 4 l~c~~~G~P~p~v~W~k--~g~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 4 LEVPISGRPTPTVTWSK--DGKPL-------KLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred EEeeEeeeCCCeEEEEE--CCEEc-------CCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 689999999 9999998 32222 2355777664 234778999999999999999999 446666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (74)
T cd05748 73 KV 74 (74)
T ss_pred EC
Confidence 54
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=81.82 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=62.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|+|.+.+.. ..+.|++.+ ..++.++......++||.+... +++.++|.|.+++.+|+|.|+|++...+..+..+.+.
T Consensus 17 L~C~v~~~~~~~v~w~~~~-~~~i~~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 17 ISCRVKNNDDSVIQLLNPN-RQTIYFRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred EEEEEccCCccEEEEEecC-CcEEEecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 689999998 889999755 3344445556668999998863 3579999999999999999999998888777766655
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 ~ 95 (95)
T cd05881 95 V 95 (95)
T ss_pred C
Confidence 3
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=79.92 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ... +.+..++.+.. +..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 4 l~C~~~G~P~p~v~W~k~--g~~-------~~~~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 4 FECEVTGKPTPTVKWVKN--GDM-------VIPSDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EEEEEEEeCCCEEEEEEC--CeE-------CCCCCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 99999982 221 22345666553 234888899999999999999 556667777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 70 ~V 71 (71)
T cd05723 70 II 71 (71)
T ss_pred EC
Confidence 54
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=83.23 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=58.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+++.| +.|.|+|.+ +..+..++.....++|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.+..+..+.|.
T Consensus 17 L~C~~~~~p~~~v~W~~~~-~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~ 94 (95)
T cd07701 17 LTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLT 94 (95)
T ss_pred EEEEEecCCceEEEEeCCC-CeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEE
Confidence 689999999 999999643 3444444444456789887542 2357899999999999999999997766667777776
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd07701 95 V 95 (95)
T ss_pred C
Confidence 4
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=81.08 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=48.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+ ..+.++.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 7 l~C~~~g~P~p~i~W~k--~g~~~-------~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 7 FLCEAQGYPQPVIAWTK--GGSQL-------SVDRRHLVLS-----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred EEeECCEecCCEEEEEE--CCEEC-------CCCCCeEEcc-----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 689999999 9999998 33222 2334554432 347999999999999999999 556667777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 54
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=78.92 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 L~C~v~G~P~P~v~W~k--~~~~i~------~~~~r~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 3 LECRVSAIPPPQIFWKK--NNEMLT------YNTDRISLYQD-NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred EEEEEeecCCCeEEEEE--CCEECC------CCCCcEEEEEc-CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 689999999 9999998 322221 11346666542 234568999999999999999999 556677777766
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~v 75 (75)
T cd05744 74 DV 75 (75)
T ss_pred eC
Confidence 54
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=83.30 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=54.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+++..+..+. ...++|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 21 LSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKG--QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred EEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEee--cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEE
Confidence 689999999 999999854433222111 12346777754 234678999999999999999999 556666677766
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 97 ~~ 98 (98)
T cd05870 97 DI 98 (98)
T ss_pred eC
Confidence 54
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=80.06 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=57.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccC--CCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.|.| +.+.|+| +..++. ....||.+.... .....+|.|.++..+|+|.|+|.+ |..+.....+
T Consensus 6 l~C~~~g~p~~~i~W~k--~~~~i~------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 6 MSCTAHGEKPIIVRWEK--EDRIIN------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred EEEEEECCCCCEEEEee--CCEECC------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 689999999 9999998 333221 112467665321 122467999999999999999999 5677788888
Q ss_pred EEEEEcCCC
Q psy3125 77 MLNVDDRGR 85 (163)
Q Consensus 77 ~l~V~~~~~ 85 (163)
.|.|.++|.
T Consensus 78 ~L~V~~~P~ 86 (88)
T cd05735 78 QLTVQEPPD 86 (88)
T ss_pred EEEEeCCCC
Confidence 999988754
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=80.03 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ..+.|+.+... ....+|.|.++..+|+|.|+|.+ |..+.....+.|
T Consensus 15 l~c~~~G~P~P~v~W~k--~~~~i~------~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 15 LDVPISGEPAPTVTWSR--GDKAFT------ETEGRVRVESY--KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEeeEeecCCCeEEEEE--CCEECc------cCCCeEEEEEc--CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 689999999 9999998 332221 12347776642 34678999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
+|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 54
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=82.05 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=56.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+.. ++.+.........||.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~~~g~P~p~v~W~k~g~~-~~~~~~~~~~~~~r~~v~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 6 FQCEATGNPQPAIFWQKEGSQ-NLLFSYQPPQSSSRFSVSQ-----TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred EEEECCccCCCEEEEEeCCCc-ceeecccCCCCCCeEEECC-----CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999 99999984322 2211111112356777653 346999999999999999999 557778888899
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|...
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 98865
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=76.26 Aligned_cols=62 Identities=16% Similarity=0.364 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.+.|+| ++..+. .+ ....+|.|.++..+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~c~v~g~P~P~v~W~k--dg~~l~---------~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 63 (67)
T cd05863 3 LPVKVAAYPPPEFQWYK--DGKLIS---------GK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL 63 (67)
T ss_pred EEEEEEEeCCCEEEEEE--CCEECc---------cc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence 689999999 9999998 333321 01 12457999999999999999999 555666666666
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 64 ~l~ 66 (67)
T cd05863 64 ELI 66 (67)
T ss_pred EEE
Confidence 654
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=78.21 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=49.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| +... +..+.|+.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~~~g~P~p~v~W~k--~~~~-------~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 6 IECKPKAAPKPTISWSK--GTEL-------LTNSSRICIWP-----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred EEEeeeEcCCCEEEEEE--CCEE-------cccCCCEEECC-----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 689999999 9999998 3222 22455666543 346999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 72 ~V 73 (73)
T cd04969 72 SV 73 (73)
T ss_pred EC
Confidence 54
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=77.96 Aligned_cols=70 Identities=19% Similarity=0.401 Sum_probs=50.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+..... .....|+.+.. ....|.|.+++.+|+|.|.|.+. ..+..+..+.|
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~~~~------~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGTDFP------AARERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred eEeecccccCCEEEEEeCCCccCC------cccccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 689999999 99999984321111 01234555543 23479999999999999999994 46667777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 76
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=77.06 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....++.+.. +.+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 L~C~~~g~P~p~i~W~k--~g~~~-------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 3 IPCSAQGDPEPTITWNK--DGVQV-------TESGKFHISP-----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred eEecceEeCCCEEEEEE--CCEEC-------CCCCCEEECC-----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 689999999 9999998 32222 2345666543 347999999999999999999 445555555544
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=81.70 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=49.4
Q ss_pred CceEEecCC-CcEEEEEec--CCeeEEecceEecCCCeEEEecc-----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKR--DLHILTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| |.|.|+|.+ ++..+..+ ..++..+... .......|.|.+++.+|+|.|+|.+ |..+.
T Consensus 6 l~C~v~g~P~P~i~W~k~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 6 FHCKVYSDAQPHIQWLKHVEVNGSKYGPD-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred EEEEEeCCCCCeEEEEEecccCCceeCCC-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 689999999 999999842 11111101 1122222110 0123457999999999999999999 55677
Q ss_pred eeEEEEEEE
Q psy3125 72 MNMAIMLNV 80 (163)
Q Consensus 72 ~~~~~~l~V 80 (163)
....+.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 777777876
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=108.57 Aligned_cols=141 Identities=22% Similarity=0.362 Sum_probs=101.6
Q ss_pred cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEEEEEcC
Q psy3125 7 GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIMLNVDDR 83 (163)
Q Consensus 7 ~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~V~~~ 83 (163)
+.| +.|.|.| ++..+.++ -.+++.+.. .+.|.|.+++.+|+|.|.|.+++. ...+....|+|.++
T Consensus 158 ghpeptvSw~K--dg~pl~~~-----~~~~~~lis-----gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~ 225 (1281)
T KOG4222|consen 158 GHPEPTVSWVK--DGKPLDHY-----DVPIIALIS-----GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK 225 (1281)
T ss_pred CCCCCcceeec--CCCccccc-----cceeEEEec-----CCcEEEeccccCCCceeeeeecccccccccccceeeeccC
Confidence 566 9999998 44444321 123443332 456999999999999999999652 34567778888876
Q ss_pred C------CceEeeCCCeEEEecCC--CCceeEEEEeCCC-----eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 84 G------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDA-----RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 84 ~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+ ....+..|..+.+.|.. .+.+.+.|...+. |+.+.. +..+|.|.+++..|.|.|.|.+ |..
T Consensus 226 P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~v 301 (1281)
T KOG4222|consen 226 PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLV 301 (1281)
T ss_pred CccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee----ccccccccccCCCcccceeeeccccc
Confidence 4 34466777778888864 4456677766554 334333 2245999999999999999999 999
Q ss_pred CCccEEEEEEEecC
Q psy3125 150 PKMNMAIMLNVDGK 163 (163)
Q Consensus 150 ~~~~~~~~L~V~~~ 163 (163)
|......+|.|.+.
T Consensus 302 G~l~asa~ltV~ap 315 (1281)
T KOG4222|consen 302 GGLEASATLTVQAP 315 (1281)
T ss_pred cccccccceEEecC
Confidence 99999999999763
|
|
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-13 Score=79.72 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=50.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....++.+.... ....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 L~C~v~G~P~p~v~W~k--~g~~l-------~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 21 LTCTVFGDPDPEVSWLK--NDQAL-------ALSDHYNVKVEQ-GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEEEEecCCCeEEEEE--CCEEC-------ccCCCEEEEEcC-CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 689999999 9999998 33222 234566665421 23568999999999999999999 546666666555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 91 ~v 92 (92)
T cd05737 91 SV 92 (92)
T ss_pred eC
Confidence 53
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=76.52 Aligned_cols=65 Identities=25% Similarity=0.451 Sum_probs=48.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+. . .+.+|+.+.. ..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~~-~---------~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 3 FQCEVGGDPVPTVLWRKEDG-E---------LPKGRAEILD-----DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred EEEECccCCCCEEEEEECCc-c---------CCCCcEEEee-----CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 689999999 9999998321 1 1345666552 347999999999999999999 555666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 68 ~V 69 (69)
T cd05725 68 TV 69 (69)
T ss_pred EC
Confidence 54
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=76.48 Aligned_cols=66 Identities=14% Similarity=0.328 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+. .+.++.. ...+|.|.+++.+|+|.|+|.+. ..+.....+.+
T Consensus 3 l~c~v~g~P~p~v~W~k--~g~~l~-------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 67 (71)
T cd04976 3 LPVKVKAYPPPEIQWYK--NGKLIS-------EKNRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF 67 (71)
T ss_pred EEeEEEEeCCCEEEEEE--CCEECC-------CCCEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence 689999999 9999998 333222 2233321 24579999999999999999994 45555666666
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 68 ~~~ 70 (71)
T cd04976 68 TLV 70 (71)
T ss_pred EEE
Confidence 654
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=76.56 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.+.| + .+.|+| ++..+.... .+.++..... .....+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus 5 L~C~a~g~P~p~~~v~W~~--~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 5 LQCHASHDPTMDLTFTWSL--DDFPIDLDK----PNGHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred EEEEEecCCCCCeEEEEEE--CCeEccccC----CCCcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 689999999 5 579998 333332111 1334432211 123568999999999999999999 5567788888
Q ss_pred EEEEEcC
Q psy3125 77 MLNVDDR 83 (163)
Q Consensus 77 ~l~V~~~ 83 (163)
.|.|..+
T Consensus 78 ~L~V~~~ 84 (85)
T cd05854 78 TLVVRGP 84 (85)
T ss_pred EEEEECC
Confidence 9998865
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-13 Score=76.12 Aligned_cols=68 Identities=24% Similarity=0.491 Sum_probs=48.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.|.| |.|.|+| +...+.. ..+.|+.... +.+|.|.+++.+|+|.|+|.+.+ .+. .+..+.
T Consensus 3 l~C~~~G~P~p~v~W~k--~~~~~~~-----~~~~~~~~~~-----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~ 70 (74)
T cd05738 3 MLCAASGNPDPEITWFK--DFLPVDT-----TSNGRIKQLR-----SGALQIENSEESDQGKYECVATNSAGTRYSAPAN 70 (74)
T ss_pred EEEEEeEecCCEEEEEE--CCEECcc-----CCCCCEEEcC-----CcEEEECCCChhhCEEEEEEEECCCCceEcccEE
Confidence 689999999 9999998 3222210 1345666542 34699999999999999999954 443 456666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 71 l~v 73 (74)
T cd05738 71 LYV 73 (74)
T ss_pred EEE
Confidence 665
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-13 Score=76.48 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=47.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.|.| |.|.|+|. ... +...+|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 6 l~C~~~g~P~p~v~W~~~--~~~-------~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 6 FTCVATGVPTPIINWRLN--WGH-------VPDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred EEEEEEEecCCEEEEEEC--CeE-------CCCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 689999999 99999872 211 12345676654 234678999999999999999999 44554444333
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-13 Score=75.81 Aligned_cols=66 Identities=23% Similarity=0.423 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+.. +. ..+..... ...+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 L~C~~~G~P~P~v~W~k~~~~-~~---------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 3 LECIAEGLPTPEVHWDRIDGP-LS---------PNRTKKLN----NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred EEEEeeEecCCeEEEEECCcC-CC---------CCceeEEc----CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 689999999 99999984321 11 11222221 3567999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 69 ~V 70 (71)
T cd05876 69 TV 70 (71)
T ss_pred EE
Confidence 65
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=76.78 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=55.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+.+ +.+.|+| ++..+.+. ....||..... .....+|.|.+++.+|+|.|+|.+. .....+..+
T Consensus 5 l~C~v~~d~~l~~~~~W~~--dg~~i~~~----~~~~~~~~~~~-~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 5 LPCQVSHDHSLDIVFTWSF--NGHLIDFQ----KDGDHFERVGG-QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred EEEEeccCCCCCcEEEEEE--CCEECccc----CCCccEEEecc-CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 689998755 8899998 54444321 12336665421 1234579999999999999999994 466788888
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..+|
T Consensus 78 ~L~V~~pP 85 (85)
T cd05853 78 DLIVRGPP 85 (85)
T ss_pred EEEEecCC
Confidence 99998764
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=74.98 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=47.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCe--eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM--NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~--~~~~ 76 (163)
|.|.+.|.| |.|.|+| ++..+.. ...++.+.. ...+|.|.+++.+|+|.|+|.+ |..+.. +..+
T Consensus 3 L~C~~~g~P~p~v~W~k--~g~~l~~------~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 3 LRCHIDGHPRPTYQWFR--DGTPLSD------GQGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred EEEEeeecCCCcEEEEE--CCEECCC------CCccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence 689999999 9999998 3332211 123444432 2347999999999999999999 444544 3455
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 71 ~l~v~ 75 (77)
T cd05760 71 TLSII 75 (77)
T ss_pred EEEEe
Confidence 66654
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=77.86 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=51.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~~ 76 (163)
|.|.+.|.| +.|.|+|.++..+.. .+.|+.+... +....+|.|.+++.+|+|.|+|.+.+ .+.....+
T Consensus 20 l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 20 FLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred EEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 689999998 599999743332221 1346665432 22357899999999999999999954 36667777
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 92 ~l~v 95 (96)
T cd05865 92 NVKI 95 (96)
T ss_pred EEEE
Confidence 7765
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=75.31 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEE--ecc---CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSV--IHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~--~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~ 73 (163)
|+|.+.|.| |.|.|+| ++..+. .+.+... ... ......+|.|.+++.+|+|.|+|.| |..+..+
T Consensus 3 i~~~v~G~P~P~v~W~k--~g~~i~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 3 IPFTVRGNPKPTLTWYH--NGAVLN-------ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEeEeeCCCcEEEEE--CCEECc-------CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 589999999 9999998 443332 1222211 110 1123667999999999999999999 5455555
Q ss_pred EEEEE
Q psy3125 74 MAIML 78 (163)
Q Consensus 74 ~~~~l 78 (163)
..++|
T Consensus 74 ~~~~~ 78 (81)
T cd04971 74 KSISA 78 (81)
T ss_pred eEEEe
Confidence 55444
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=74.37 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=45.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|+|.+.|.| |.|.|+| ++..+. .+.++ . ...+|.|.++..+|+|.|+|.+ |..+......++
T Consensus 3 ~~c~v~G~P~P~v~W~k--~g~~l~-------~~~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 3 IPVKYYGYPPPEVKWYK--NGQLIV-------LNHTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred EEeEEEEeCCCEEEEEE--CCEECC-------CCCEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 689999999 9999998 333322 12222 1 1346999999999999999999 555555555555
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.+.
T Consensus 67 ~l~ 69 (70)
T cd05864 67 QLV 69 (70)
T ss_pred EEE
Confidence 543
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=75.17 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=49.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+.... ...++.+. +.+|.|.+++.+|+|.|+|.+ |..+.....++|
T Consensus 6 l~C~~~G~P~p~i~W~k--~g~~i~~~~----~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 6 LDCQVEGIPTPNITWSI--NGAPIEGTD----PDPRRHVS------SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred EEEEeeEeCCCeEEEEE--CCEECCCCC----CCceEEee------CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 9999998 333332110 12344432 346999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=77.18 Aligned_cols=69 Identities=23% Similarity=0.489 Sum_probs=53.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|++ ++..+ ..+.++.+... ....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 20 l~c~~~~~p~~~v~W~~--~~~~l-------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 20 LECEVSGNPPPTVTWYK--NGRPL-------TSSQRYQIESD--GGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp EEEEEEESSSSEEEEEE--TTEEE-------ESSSSEEEEEE--TTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCcccccc--cccce-------eeeeeeeeecc--cceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 33333 34677777763 368999999999999999999994 45555666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~V 90 (90)
T PF07679_consen 89 TV 90 (90)
T ss_dssp EE
T ss_pred EC
Confidence 65
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=74.73 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=46.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEE--ec-cCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSV--IH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~--~~-~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|+|.+.|.| |.|.|+| ++..+. .+.+... .. .......+|.|.++..+|+|.|+|.| |..+.....
T Consensus 3 i~~~v~G~P~Pti~W~k--ng~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFH--EGAILN-------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEE--CCEECC-------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 579999999 9999998 444332 2233211 11 11123568999999999999999999 445555555
Q ss_pred EEE
Q psy3125 76 IML 78 (163)
Q Consensus 76 ~~l 78 (163)
+.+
T Consensus 74 ~~~ 76 (79)
T cd05855 74 VSA 76 (79)
T ss_pred EEe
Confidence 443
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=78.71 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=50.1
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEecc---CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+++ .| |.|.|+| ++..+. .+.+..+... ......+|.|..+..+|+|.|+|.| |..+..+.
T Consensus 23 L~c~v~g~~P~p~v~W~K--dg~~i~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 23 LVVEVEAYPPPPHINWTY--DNRTLT-------NKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEEEEEecCCCCccEEEe--CCeeCC-------CCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEE
Confidence 6899999 88 9999999 443332 1222222211 0112467999999999999999999 55667777
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|.|.
T Consensus 94 t~~L~V~ 100 (101)
T cd04975 94 TFELYVN 100 (101)
T ss_pred EEEEEEE
Confidence 7777775
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=74.33 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=50.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| +...+..+ ...++.+.. +...|.|.+++.+|.|.|+|.+ +..+.....+.|
T Consensus 3 L~C~v~g~P~p~v~W~k--~~~~l~~~-----~~~~~~~~~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 3 LRCHAEGIPLPRLTWLK--NGMDITPK-----LSKQLTLIA----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred eEeEeeecCCCEEEEEE--CCEECCCC-----CCccEEEeC----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 689999999 9999998 22222111 123444432 2347999999999999999999 446666777777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|.+
T Consensus 72 ~V~~ 75 (76)
T cd05736 72 FVED 75 (76)
T ss_pred EEEc
Confidence 7753
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=77.90 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=52.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ...+..... ...+|+.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..++|
T Consensus 22 l~C~~~G~P~P~v~W~~~--~~~~~~~~~--~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 22 LTCEASGDPIPSITWRTS--TRNISSEEK--TLDGHIVVRS--HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred EEEEeeEeCCCEEEEEEC--CccccCCcc--ccCccEEEEc--CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 689999999 99999983 222211111 1245665553 233568999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 96 ~v 97 (97)
T cd05869 96 EV 97 (97)
T ss_pred EC
Confidence 65
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=76.87 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +.+.|++.+ +.++..+......++||.+... ....++|.|.+++.+|+|.|.|.+.........+.|.
T Consensus 17 L~C~~~~~~~~~v~W~~p~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 94 (95)
T cd05717 17 LKCRVKNNDNSSLQWSNPN-QQTLYFNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVT 94 (95)
T ss_pred EEEEECCCCCceEEEeCCC-CcEEEeccccccccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence 689999988 999998643 3333334333334679888542 3457889999999999999999996654445555555
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd05717 95 V 95 (95)
T ss_pred C
Confidence 4
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=77.64 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+. .+ ....++.+ .+..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 l~C~~~G~P~P~v~W~k~~~--~~-------~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 21 LECFALGNPVPVIRWRKILE--PM-------PATAEISM------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred EEEEecccCCCEEEEEECCc--CC-------CCCCEEec------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999 9999998321 11 11223321 1347999999999999999999 556667777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 86 ~V 87 (88)
T cd05851 86 YV 87 (88)
T ss_pred EE
Confidence 66
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=75.48 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=48.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.|.| |.|.|+|.+...... .......++|+.+.. +.+|.|.+++.+|+|.|.|.+.+ .+. .+..+.
T Consensus 3 l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 3 LNCSAEGYPPPTIVWKHSKGRGHPQ-HTHTCCLAGRIQLLS-----NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred eEeeCeEeCCCEEEEEECCCccccc-cccccccCCCEEEec-----CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 689999999 999999843321110 000011345666543 46799999999999999999944 333 355555
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=78.44 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=49.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEecc----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.|.| |.+.|+| ++..+..+ .+...... ......+|.|.+++.+|+|.|+|.+ |..+..+.
T Consensus 23 l~~~v~g~P~P~v~W~k--dg~~l~~~-------~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 23 FVVEVEAYPPPQIRWLK--DNRTLIEN-------LTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EEEEEEEeCCCceEEEE--CCEECcCC-------cceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 689999999 9999998 43333211 11111110 0112457999999999999999999 45566677
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 7777764
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=76.89 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=52.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+ ..+.... ...++|+.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 21 l~C~~~g~p~p~v~W~~~~--~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 21 LTCEAEGDPIPEITWRRAT--RNFSEGD--KSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred EEEEEeEcCCCcEEEEECC--cccCCCC--ccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 689999999 999999832 2221111 11245666553 234678999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 95 ~v 96 (96)
T cd05732 95 EV 96 (96)
T ss_pred eC
Confidence 54
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=76.00 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=49.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| ++..+ ..+.|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 23 L~C~~~g~P~p~v~W~k--~g~~l-------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 23 FSCDVDGEPAPTVTWMR--EGQII-------VSSQRHQITS--TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEeecCCCEEEEEE--CCEEC-------CCCCcEEEEE--cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 689999999 9999998 32222 2345777664 234688999999999999999999 445555554443
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=101.05 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=105.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| ++|.|.|.+.. .+.+||.+.. ++.+|.|.+++..|.|+|.|.+ +..+.......|
T Consensus 245 f~c~v~GdP~P~Vrwkk~~~~----------~P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 245 FDCRVGGDPQPTVRWKKDDPS----------LPRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred cccccCCCCCCceeeeccCCC----------CCccceeeee----ccccccccccCCCcccceeeeccccccccccccce
Confidence 689999999 99999873322 2467898886 2578999999999999999999 667788888899
Q ss_pred EEEcCCCc------eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCC--------CceEEEEecccCcCCCee
Q psy3125 79 NVDDRGRG------ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQN--------SDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~~~------~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~L~i~~v~~~D~G~ 141 (163)
+|..++.- ..+..|..+.+.|.. .+.+.+.|...+....+.. ... ....+|+|.+++..|.|.
T Consensus 311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~ 390 (1281)
T KOG4222|consen 311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGY 390 (1281)
T ss_pred EEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccce
Confidence 99987522 234456678888863 4556777776655332211 000 112369999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEe
Q psy3125 142 YECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
|.|+. +..+......+|.|.
T Consensus 391 Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 391 YVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred EeecccccccccccceeEEEE
Confidence 99997 555555555555543
|
|
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=75.77 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=51.8
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+.| + .+.|+| ++..+.... .+.++..... .....+|.|.+++.+|+|.|+|.+. ..+..+..+
T Consensus 5 L~C~~~g~P~p~i~~~W~~--~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 5 LQCHASHDPTLDLTFTWSF--NGVPIDFDK----DGGHYRRVGG-KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred EEEEEecCCCCCeEEEEEE--CCeEeeccC----CCccEEEEec-ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 689999999 6 568998 333332111 1223322211 1235689999999999999999994 456677888
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..+|
T Consensus 78 ~l~V~~pP 85 (85)
T cd04970 78 DLIVRGPP 85 (85)
T ss_pred EEEEECCC
Confidence 88888753
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=75.54 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=49.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+|.+ ..+..++++.+... .....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 L~C~v~g~P~p~i~W~k~~---------~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 21 LTCTVFGNPDPEVIWFKND---------QDIELSEHYSVKLE-QGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEEEEEEeCCCeEEEEECC---------EECCCCCCEEEEEc-CCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 689999999 999999832 12223456655432 223468999999999999999999 445555555555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
+|
T Consensus 91 ~~ 92 (92)
T cd05891 91 SV 92 (92)
T ss_pred EC
Confidence 43
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=75.65 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred CceEEecCC-CcEEEEEec--CCeeEEecceEecCCCeEEEeccC-----CCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKR--DLHILTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| |.|.|+|.+ ++..+..++ .++..+.... .....+|.|.+++.+|+|.|+|.+ |..+.
T Consensus 6 L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 6 FVCKVYSDAQPHIQWLKHVEKNGSKYGPDG-----LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred EEEEEecCCCCEEEEEEecccCCcEeCCCC-----CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 689999999 999999842 111111110 1112221110 112367999999999999999999 66677
Q ss_pred eeEEEEEEE
Q psy3125 72 MNMAIMLNV 80 (163)
Q Consensus 72 ~~~~~~l~V 80 (163)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 777778876
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=74.34 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=48.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+. ...+..... .....+|.|.++..+|.|.|+|.+ |..+.....+.|
T Consensus 20 l~C~~~G~P~p~v~W~~--~g~~~~-------~~~~~~~~~--~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 20 IRCTAEGSPLPKVEWII--AGLIVI-------QTRTDTLET--TVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEEEEEEcCCCeEEEEE--CCEEcc-------CCccEEEEe--cCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 689999999 9999998 332221 111211211 123678999999999999999999 556666676666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 54
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=72.22 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=39.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.+.|+| ++..+.. ...++... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 3 l~c~v~g~P~P~v~W~k--dg~~l~~------~~~~~~~~------~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 3 LTPKVKAFPAPEVIWLK--DGLPAAE------KCSRYHVD------GYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred EEeeEEEcCCCeEEEEE--CCEECCC------CCcEEEeC------CCEEEECcCCHHHCEEEEEEEEc
Confidence 689999999 9999998 3322211 11344322 34799999999999999999954
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-12 Score=75.20 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=51.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.. ...++.+.. ....|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 23 L~C~~~g~P~p~v~W~k--~g~~~~~------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 23 LACDADGFPEPTMTWTK--DGEPIES------GEEKYSFNE----DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEEeccEeCCCEEEEEE--CCEECcC------CCCEEEEeC----CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 689999999 9999998 3332221 124555432 2346999999999999999999 556677788888
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8764
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=74.16 Aligned_cols=70 Identities=24% Similarity=0.495 Sum_probs=49.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l 78 (163)
|.|.+.|.|..|.|+|.++..+ ....|+.+.. .....+|.|.++..+|+|.|+|.+.+ .+.. ...+.|
T Consensus 20 l~C~~~G~P~~v~W~k~~g~~~--------~~~~r~~~~~--~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 20 FTCTAIGEPESIDWYNPQGEKI--------VSSQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred EEEEEEEeCCeEEEEeCCCeEe--------cCCCCEEEEe--CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 6899999998899997433222 2345777653 23456899999999999999999954 4332 445555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 90 ~~ 91 (92)
T cd05866 90 EI 91 (92)
T ss_pred EE
Confidence 44
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=73.43 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+.... .+.++. . +...|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~a~G~P~P~i~W~k--~g~~i~~~~----~~~~~~-~-----~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd05868 6 LICRANGNPKPSISWLT--NGVPIEIAP----TDPSRK-V-----DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFV 73 (76)
T ss_pred EEEEeeEeCCCeEEEEE--CCEEccccC----CCceEE-e-----cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 9999998 333332110 011111 1 1236899999999999999999 567778888888
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 74 ~v~ 76 (76)
T cd05868 74 NVL 76 (76)
T ss_pred EeC
Confidence 773
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=71.98 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=46.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+ . .+. ..+.... ....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~-~-~~~--------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 3 LECIAEGLPTPEISWIKIG-G-ELP--------ADRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred EEEEeeEecCCeEEEEECC-e-ECC--------CCceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 689999999 999999832 1 111 1222222 12457999999999999999999 555666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 69 ~V 70 (71)
T cd05731 69 TV 70 (71)
T ss_pred EE
Confidence 65
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=74.62 Aligned_cols=65 Identities=22% Similarity=0.436 Sum_probs=47.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+ ..+.++... +..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 19 l~C~~~g~p~p~v~W~k--~g~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 19 WECKASGNPRPAYRWLK--NGQPL-------ASENRIEVE------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred EEEEeeEeCCCEEEEEE--CCEEC-------CCCCeEEEe------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 9999998 32222 234455543 236999999999999999999 445566666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (85)
T cd05728 84 AV 85 (85)
T ss_pred EC
Confidence 54
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=75.12 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=54.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCC--CCeEEEEEcccC-cCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQN--SDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~v~-~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|.|.+.|.| +.+.|+| ++..+.. .++|+.+..... ....+|.|.++. .+|.|.|+|.| |..+.....
T Consensus 28 L~C~a~G~P~p~i~W~k--~g~~l~~------~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 28 LVCQAQGVPRVQFRWAK--NGVPLDL------GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred EEEECcccCCCEEEEEE--CCEECCC------CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 689999999 9999998 3333321 234665442211 224679999997 69999999999 567777888
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|..+|
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 888887664
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-12 Score=72.27 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=47.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|++ ++..+.... ...... .....|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~~~g~P~p~i~W~~--~g~~~~~~~------~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd04978 6 LDCEAEGIPQPTITWRL--NGVPIEELP------PDPRRR----VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFV 73 (76)
T ss_pred EEEEceeeCCCEEEEEE--CCEECCCCC------CcceEE----ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEE
Confidence 689999999 9999997 332222111 110111 12457999999999999999999 456677777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (76)
T cd04978 74 HV 75 (76)
T ss_pred EE
Confidence 76
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=71.12 Aligned_cols=67 Identities=15% Similarity=0.391 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|++.++. ++ ....++.... +.+|.|.++..+|+|.|.|.+. ..+..+..+.|
T Consensus 6 l~C~~~g~P~p~v~W~~~~~~-~~-------~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 6 LRCKARGDPEPAIHWISPDGK-LI-------SNSSRTLVYD-----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred EEEEccCcCCCEEEEEeCCCE-Ee-------cCCCeEEEec-----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 99999974332 22 2234444432 3469999999999999999994 45555666555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 53
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=72.54 Aligned_cols=70 Identities=20% Similarity=0.439 Sum_probs=48.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+..+.. ..++... ...++|.|.++..+|+|.|+|.+ |..+.....+.|
T Consensus 14 L~C~~~g~P~p~i~W~k--~g~~l~~~~~----~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 14 FRCPAAGNPTPTMRWLK--NGKEFKQEHR----IGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEEEcCCCCCCEEEEEE--CCEECCCCCc----eeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 689999999 9999998 3332221110 0112222 23678999999999999999999 556677777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 54
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=73.47 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=48.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l 78 (163)
|.|.+.|.|+.|.|++.++..+. ..+++.+... .....+|.|.+++.+|+|.|+|.+.+. ......+.|
T Consensus 20 l~C~~~G~p~~i~W~~~~~~~~~--------~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l 90 (92)
T cd04977 20 FLCQVIGEPKDISWFSPNGEKLV--------TQQQISVVQN-DDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL 90 (92)
T ss_pred EEEEeEeeCCeEEEECCCCCEec--------cCCCEEEEeC-CCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence 68999999988999974433222 2234444331 234678999999999999999999553 334555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 91 ~ 91 (92)
T cd04977 91 K 91 (92)
T ss_pred E
Confidence 4
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=73.65 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=57.9
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+....+.......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 335567788999999964 456789999876533211101112236999999999999999999 99999999999988
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
+
T Consensus 88 ~ 88 (88)
T cd05851 88 Q 88 (88)
T ss_pred C
Confidence 5
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=72.63 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++..+. +.. ....+.|.|.++.++|+|.|+|.| |..|...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~--~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN--TENSSKLTITEGQQEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe--cCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence 345567888999999996 44567899988765442 222 133567999999999999999999 9999999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
.++.|.|.++
T Consensus 84 ~~~~l~V~~~ 93 (98)
T cd05762 84 AQVNLTVVDK 93 (98)
T ss_pred EEEEEEEecC
Confidence 9999999875
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=72.84 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+.. +. ...++.. .+.+|.|.+++.+|+|.|.|.+ |..+.....+.|
T Consensus 21 l~C~~~g~P~p~v~W~k~~~~-~~--------~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 21 LECFALGNPVPQIKWRKVDGS-MP--------SSAEISM------SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred EEEEeeEeCCCEEEEEECCCc-CC--------CccEEEE------eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 689999999 99999983321 11 1122221 2457999999999999999999 556666677777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 86 ~V 87 (88)
T cd04968 86 YV 87 (88)
T ss_pred EE
Confidence 65
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=72.11 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=47.4
Q ss_pred CceEEecCC-CcEEEEEecC-CeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRD-LHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+|... ...+..... ....++... +..+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 6 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 6 FHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred EEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 689999999 9999998522 111100000 001222222 2467999999999999999999 54666666666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 654
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=71.68 Aligned_cols=66 Identities=18% Similarity=0.489 Sum_probs=44.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+. .+. ....... .....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 14 L~C~~~g~p~p~i~W~k~~~--~~~-------~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 14 LKCVASGNPRPDITWLKDNK--PLT-------PTEIGES----RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred EEEEeeEeCCCcEEEEECCc--CCc-------CCcccee----cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 689999999 9999998322 111 1111111 1235789999999999999999994 45555555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 4
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=70.79 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=44.7
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~ 79 (163)
|.|.+.+.++.|.|+| ++..+ ..+.|+.+.. .+|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 14 l~C~~~~~~~~v~W~k--~g~~l-------~~~~~~~~~~------~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 14 LRCRLRDDVQSINWTK--DGVQL-------GENNRTRITG------EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EEEEecCCCceEEEee--CCcCC-------CCCceEEEeC------CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 6799999778899998 33222 2345665542 2699999999999999999944 44444444444
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-11 Score=70.58 Aligned_cols=66 Identities=20% Similarity=0.472 Sum_probs=47.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC-CeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP-KMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~-~~~~~~~l 78 (163)
|.|.+.+.++.|.|+| ++..+ ...|+.+.. ...+|.|.+++++|+|.|+|.+.+ .+ ..+..+.|
T Consensus 23 l~C~a~g~~p~i~W~k--ng~~l--------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 23 LTCEAEGQATYIWWVN--NGSLL--------VPPRLQLSN----DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred EEEEeCCCCCEEEEEE--CCEEC--------CCCCEEEeC----CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 6899998888999998 33222 134554442 245799999999999999999944 44 34566667
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 66
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=69.05 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=56.2
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEe---cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTT---NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~---~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|...... .+|.|.|.+++ .+..+ .+..+.. .+|..+.... ..+.+|.|.|++.+|+|.|+|.+.+.|
T Consensus 5 L~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~~t~P 83 (96)
T cd05889 5 LECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST-REDMSLSFNNATEEDVGLYCCSLVTYP 83 (96)
T ss_pred EEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC-CCccEEEEcCCCcccCEEEEEEEEeCC
Confidence 678887654 89999986431 22221 1222222 2577776432 368899999999999999999999888
Q ss_pred CeeEEEEEEEEc
Q psy3125 71 KMNMAIMLNVDD 82 (163)
Q Consensus 71 ~~~~~~~l~V~~ 82 (163)
..+....+.|..
T Consensus 84 ~g~~~~~i~~~~ 95 (96)
T cd05889 84 QGSWEKVIEVVQ 95 (96)
T ss_pred CCCeEEEEEEEc
Confidence 887777777653
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=70.20 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.++...+..|..+.+.|. ..+.+.+.|++++..+. +... ......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE-QGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc-CCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 345567888999999996 34567889998865432 2211 123457999999999999999999 9999999
Q ss_pred EEEEEEE
Q psy3125 154 MAIMLNV 160 (163)
Q Consensus 154 ~~~~L~V 160 (163)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 9988876
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-11 Score=68.16 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=43.0
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNM 74 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~ 74 (163)
|.|.+.+ .| +.+.|+| ++..+..... ...+.+.. .....+|.|.+++.+|+|.|+|.+. ..+....
T Consensus 3 l~C~~~g~~P~p~~~W~k--~g~~l~~~~~----~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 3 LKCEATSEYPSLRFKWFK--DGKELNRKNK----PRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred EEEEccCCCCCceEEEEc--CCeeccccCC----cceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 6899999 88 9999998 3322221110 01122222 2346789999999999999999994 4444443
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=68.60 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=56.0
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+..|..+.+.|. ..+.+.+.|++++..+... .........|.|+++.++|+|.|+|.| |..|..+..+.|
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 45677888888886 3567888998876533211 011123567999999999999999999 999999999988
Q ss_pred EE
Q psy3125 159 NV 160 (163)
Q Consensus 159 ~V 160 (163)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 76
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=66.99 Aligned_cols=61 Identities=16% Similarity=0.349 Sum_probs=40.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ...+ ....++.. ....|.|.++. |+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~a~G~P~P~v~W~k~--g~~l-------~~~~~~~~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 6 LTCVAVGAPMPYVKWMKG--GEEL-------TKEDEMPV------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEEeeecCCCEEEEEEC--CEEC-------CCccceec------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 689999999 99999982 2222 12223321 13368999974 899999999 555555555444
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.6e-11 Score=70.22 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++.+...............|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 345667788889999964 345678898876533211111112356999999999999999999 99999999999988
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 88 ~ 88 (88)
T cd04968 88 Q 88 (88)
T ss_pred C
Confidence 4
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=69.36 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=52.5
Q ss_pred CceEEecCC----CcEEEEEecCC----ee--EEe--cceEecC-CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL----HI--LTT--NIYTYTG-DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~----~~--~~~--~~~~~~~-~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.....+ ..|.|+|...+ .+ +.. +...+.. .+|..+......++.+|.|.+++.+|+|+|.|.+.
T Consensus 5 L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~ 84 (100)
T cd05888 5 LPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVI 84 (100)
T ss_pred EEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEEEEE
Confidence 689887543 58999996432 11 111 2222211 25777765434568899999999999999999996
Q ss_pred C--CCCeeEEEEEEE
Q psy3125 68 T--EPKMNMAIMLNV 80 (163)
Q Consensus 68 ~--~~~~~~~~~l~V 80 (163)
+ .+.....+.|.|
T Consensus 85 ~~p~g~~~~~~~L~V 99 (100)
T cd05888 85 TFPAGNFEAELVLTV 99 (100)
T ss_pred eCCCCCeeeEEEEEe
Confidence 5 444566666766
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=67.73 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=50.3
Q ss_pred CeEEEecC--CCCceeEEEEeCCC-------eEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDA-------RFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|.+++. ++.+... .......|.|.++..+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 2 QKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred CeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 44556664 23445677776652 3333321 1222467999999999999999999 99999999999999
Q ss_pred ecC
Q psy3125 161 DGK 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.+
T Consensus 82 ~~~ 84 (88)
T cd05735 82 QEP 84 (88)
T ss_pred eCC
Confidence 753
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=66.56 Aligned_cols=61 Identities=16% Similarity=0.400 Sum_probs=41.1
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ .| +.+.|+| ++. .+.... ....|+.+.. .....+|.|.+++.+|+|.|.|.+.+
T Consensus 3 L~C~a~~~~p~~~~~W~~-~g~-~i~~~~---~~~~~~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~N 65 (76)
T cd05895 3 LRCETVSEYPSLRFKWFK-NGK-EIGAKN---KPDNKIKIRK--KKKSSELQISKASLADNGEYKCMVSS 65 (76)
T ss_pred EEEecccCCCCCceEEEE-CCc-ccccCC---CCCceEEEEe--CCcEEEEEECcCCcccCEEEEEEEEe
Confidence 6899874 57 8999998 232 222111 1133444433 23467899999999999999999954
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=67.65 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=35.5
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
...|.|.+++..|+|.|+|.| |..|..+.++.|.|.|+
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~ 84 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP 84 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence 457999999999999999999 99999999999999875
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=66.13 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=39.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC----cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ----KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~----~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+. ...++|+.+.. .+.+|.|.++. .+|+|.|+|.+.+
T Consensus 3 l~C~~~G~P~P~v~W~k--~g~~~~-----~~~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05875 3 IECEAKGNPVPTFQWTR--NGKFFN-----VAKDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARN 64 (77)
T ss_pred EEEeccccCCCEEEEEE--CCEEcc-----CcCCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence 689999999 9999998 333221 12355666543 24578888764 2469999999954
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=67.99 Aligned_cols=76 Identities=20% Similarity=0.342 Sum_probs=54.5
Q ss_pred CCceEeeCCCeEEEecC--CCC-ceeEEEEe-CCCeEE-------EecCCCCceEEEEecccCcCCCeeEEEEc-CCC-C
Q psy3125 84 GRGARLSAGPLLNFAFP--DLL-TTNIYTYT-GDARFS-------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-P 150 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~-~~~~~~~~-~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~ 150 (163)
+....+..|..+.+.|. ..+ .+.+.|++ ++..+. +.. .......|.|.+++.+|+|.|+|.| |.. +
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR-NDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe-CCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 34456778888999995 333 35889987 443222 111 1122467999999999999999999 875 8
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+.++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8899998887
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=68.26 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=53.0
Q ss_pred ceEeeCCCeEEEecCC--CCceeEEEEeCCC-------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 86 GARLSAGPLLNFAFPD--LLTTNIYTYTGDA-------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+..|..+.+.|.. .+.+.+.|++... |+.+.. ......|.|.+++.+|+|.|+|.| |..
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG--QHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--cCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 3556677888888863 3456788876421 222221 122457999999999999999999 999
Q ss_pred CCccEEEEEEE
Q psy3125 150 PKMNMAIMLNV 160 (163)
Q Consensus 150 ~~~~~~~~L~V 160 (163)
|..+.++.|+|
T Consensus 88 G~~~~~~~l~~ 98 (98)
T cd05870 88 GGHQKSMYLDI 98 (98)
T ss_pred CcceeEEEEeC
Confidence 99999999986
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-11 Score=67.53 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=44.5
Q ss_pred CCCceeEEEEeCCCeE-------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARF-------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+ .+.. .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 9 G~P~P~i~W~k~~~~i~~~~~r~~~~~-~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQYNTDRISLYQ-DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred ecCCCeEEEEECCEECcCCCCeEEEEE-cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 3466788888875433 2222 1122347999999999999999999 99999999999986
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=67.60 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=52.5
Q ss_pred CceEEecCC--CcEEEEEecCC--eeEE-ec---ceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL--HILT-TN---IYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~--~~~~-~~---~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.....+ .+|.|.|..++ ..+. .. +..+ .-.+|..+. .++..+.+|.|.+++.+|+|.|+|++.+.|
T Consensus 5 L~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP 83 (96)
T cd05887 5 LKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFP 83 (96)
T ss_pred EEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCC
Confidence 689998665 89999986432 1221 11 1111 113577775 345568999999999999999999997655
Q ss_pred Ce--eEEEEEEE
Q psy3125 71 KM--NMAIMLNV 80 (163)
Q Consensus 71 ~~--~~~~~l~V 80 (163)
.. ...+.|.|
T Consensus 84 ~G~~~~~~~l~~ 95 (96)
T cd05887 84 LGNTQSSTTVTV 95 (96)
T ss_pred CCCeeEEEEEEE
Confidence 44 45555555
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.6e-11 Score=67.24 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCCC-CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQN-SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++++..+....+.. .....|.|.+++++|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 2 GRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 456667753 3456778887654321110000 11346999999999999999999 99999999999876
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=67.73 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=52.8
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---------CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
..+..|..+.+.|.. .+.+.+.|+.++..+.... ........|.|++++.+|+|.|+|.| |..|..+.
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 344456778888863 3456788887654322110 01123467999999999999999999 99999999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
+++|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 999986
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=67.87 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=51.7
Q ss_pred ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...+..|..+.+.|... ..+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|.....+.|+|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDDVQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCCCceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 45567788888888532 23468898876543211000001235999999999999999999 88888888877765
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-11 Score=65.71 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=45.0
Q ss_pred CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.+.|++++..+... .....|.|+++..+|+|.|+|.| |..|..+.++.|.|.
T Consensus 9 g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 9 AYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 3456789999987755421 23457999999999999999999 999988888888764
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=67.83 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=50.6
Q ss_pred EEEecCC----CCceeEEEEeCCCeEEEecCC--------CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 95 LNFAFPD----LLTTNIYTYTGDARFSVIHPQ--------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 95 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+.+.|.. .+...+.|++++..+...... ......|+|++++..|+|.|+|.| +..+..+.++.|.|+
T Consensus 3 ~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 3 IVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred EEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 5566652 345677888887655321100 012346999999999999999999 889999999999998
Q ss_pred cC
Q psy3125 162 GK 163 (163)
Q Consensus 162 ~~ 163 (163)
|.
T Consensus 83 ~p 84 (85)
T cd05853 83 GP 84 (85)
T ss_pred cC
Confidence 74
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=70.28 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=48.6
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|+|.+.. .. ..|.|+|.....+.... ......+++|.-...-..++++|.|.+++.+|+|.|.|++...+ ..
T Consensus 9 L~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~ 88 (97)
T cd05775 9 LPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTI 88 (97)
T ss_pred EeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeE
Confidence 5787766 44 88999986443343332 12222233332211112357999999999999999999995433 33
Q ss_pred eEEEEEEE
Q psy3125 73 NMAIMLNV 80 (163)
Q Consensus 73 ~~~~~l~V 80 (163)
...+.|.|
T Consensus 89 ~~~f~L~v 96 (97)
T cd05775 89 TKEFTLHI 96 (97)
T ss_pred EEEEEEEe
Confidence 45555555
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=68.17 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=50.1
Q ss_pred CceEEecCC----CcEEEEEecCCeeE-Eecce--Ee-----cCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHIL-TTNIY--TY-----TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~-~~~~~--~~-----~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.... ..|.|+|.+...+. ..... .. ...+|+.+... ...++.+|.|.+++.+|+|.|.|.+.
T Consensus 6 L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 85 (100)
T cd05713 6 LPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQ 85 (100)
T ss_pred EEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEe
Confidence 689986332 57999986543332 11111 11 11257776542 22457899999999999999999996
Q ss_pred CCC-CeeEEEEEEE
Q psy3125 68 TEP-KMNMAIMLNV 80 (163)
Q Consensus 68 ~~~-~~~~~~~l~V 80 (163)
+.+ .....+.|+|
T Consensus 86 ~~~~~~~~~i~l~v 99 (100)
T cd05713 86 SDGFYEEATVELKV 99 (100)
T ss_pred cCCcEEEEEEEEEE
Confidence 433 3445555554
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=67.72 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=53.3
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCc-
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM- 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~- 152 (163)
..+....+..|..+.+.|.. .+. .+.|+.+++...... ........|.|+++..+|+|.|+|.| |..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 33445667788899999953 334 788887543221111 11123457999999999999999999 887775
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
.+++.|.|
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 67777776
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-11 Score=67.48 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=50.7
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 G~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5667788863 456778898876543221100 012346999999999999999999 99999999999986
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=66.08 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=45.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--CeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~~~~ 76 (163)
|.|.+.+.| +.+.|.+.+... +.. .....+..+. ......+|.|.+++.+|+|.|.|.+.+ .. ..+..+
T Consensus 6 l~C~~~~~~~~~~~W~~~~~~~----~~~-~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 6 VNCIVQGNEVVDFSWTYPGKDI----GKG-IPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred EEEEEECCCccEEEEEECCccC----CCC-ceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 689999999 999998632110 000 0000011111 112256899999999999999999954 32 345555
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66654
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=69.60 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred ceEeeCCCeEEEecC--C-CCceeEEEEeCCCeEEEecC---------CCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 86 GARLSAGPLLNFAFP--D-LLTTNIYTYTGDARFSVIHP---------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...+..|..+.+.|. . .+.+.+.|++++..+.-... .......|.|.+++++|+|.|+|.| |..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 345667888888885 3 45667899988764431110 0112467999999999999999999 999999
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
+..+.|.|..
T Consensus 92 ~~t~~L~V~v 101 (101)
T cd04975 92 SLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999863
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=66.88 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=39.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC----cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ----KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~----~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+..+ .++++.+.. .+.+|.|.++. .+|+|.|+|.+.+
T Consensus 3 l~C~~~G~P~P~v~W~k--~g~~l~~~-----~~~~~~~~~----~~g~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05733 3 IKCEAKGNPPPTFSWTR--NGTHFDPE-----KDPRVTMKP----DSGTLVIDNMNGGRAEDYEGEYQCYASN 64 (77)
T ss_pred EEeeCcccCCCeEEEEE--CCeECCCC-----CCCCEEEeC----CCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence 689999999 9999998 33332211 234554432 35578888875 4799999999954
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=69.47 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=45.2
Q ss_pred CceEEec-----CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCee
Q psy3125 1 MACTVMG-----LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMN 73 (163)
Q Consensus 1 l~C~~~~-----~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~ 73 (163)
|.|.+.+ .| +.|.|+|.+....+.. ....|+.. .+.+|.|.+++.+|+|.|+|.+. ..+...
T Consensus 19 L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 19 IKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMHQ------QKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceeee------cCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 6799998 57 8999999432211110 01233322 13579999999999999999994 445555
Q ss_pred EEEEEEE
Q psy3125 74 MAIMLNV 80 (163)
Q Consensus 74 ~~~~l~V 80 (163)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 5666654
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=67.54 Aligned_cols=66 Identities=27% Similarity=0.474 Sum_probs=44.9
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAI 76 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~ 76 (163)
|.|.+ .+.| +.+.|+| ++..+. ....|+.+.. +.+|.|.+++.+|+|.|+|.+.+ .+. .+..+
T Consensus 16 l~C~~~~g~p~p~i~W~k--~g~~~~------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 16 LECSPPRGHPEPTVSWRK--DGQPLN------LDNERVRIVD-----DGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred EEEECCCCCCCCEEEEEE--CCEECC------CCCCCEEEcc-----CCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 67998 6888 9999998 332221 1134555442 34799999999999999999954 333 34455
Q ss_pred EEE
Q psy3125 77 MLN 79 (163)
Q Consensus 77 ~l~ 79 (163)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=68.85 Aligned_cols=55 Identities=27% Similarity=0.570 Sum_probs=38.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| +.|.|+| ++..+..+ .+.++.+. +.+|.|.++. .+|+|.|+|.+.+
T Consensus 24 l~C~~~G~P~P~i~W~k--~g~~l~~~-----~~~~~~~~------~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 24 LNCEARGNPVPTYRWLR--NGTEIDTE-----SDYRYSLI------DGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred EEEEeeecCCCEEEEEE--CCeECccC-----CCceEEee------CCeEEEccCCccCcCEEEEEEEEc
Confidence 689999999 9999998 33333211 12244332 2368999985 6999999999954
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=65.26 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCCceeEEEEeCCC-------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDA-------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++. ++.+.. .......|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 9 G~P~P~v~W~k~~~~l~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 9 GVPHPQIFWKKENESLTHNTDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EecCCEEEEEECCEECCCCCCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 34556788887643 333322 1122346999999999999999999 99999999999986
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=67.20 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|. ..+.+.+.|+.++..+.... ........|.|.+++.+|.|.|+|.| |..|..+..+
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 34455778899999996 35678999998876442111 11123457999999999999999999 9999999999
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|+|
T Consensus 87 ~L~v 90 (90)
T cd04972 87 QVTV 90 (90)
T ss_pred EEeC
Confidence 9876
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=65.43 Aligned_cols=57 Identities=18% Similarity=0.416 Sum_probs=37.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc----CCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK----RDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~----~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+.. ..++++.+.. .+.+|.|..+.. .|.|.|+|.+.+
T Consensus 3 l~C~a~G~P~P~i~W~k--~g~~l~~-----~~~~~~~~~~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05874 3 IQCEAKGKPPPSFSWTR--NGTHFDI-----DKDPKVTMKP----NTGTLVINIMNGEKAEAYEGVYQCTARN 64 (77)
T ss_pred EEeeCcccCCCeEEEEE--CCeECCC-----cCCCCEEEeC----CCceEEEeccccCCCCCCCEEEEEEEEc
Confidence 689999999 9999998 3332211 1234444432 244677766654 478999999954
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-10 Score=66.28 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=54.5
Q ss_pred EEcCCCceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEe------cCCCCceEEEEecccCcCCCeeEEEEc-CCC-C
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVI------HPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-P 150 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~ 150 (163)
|...+....+..|..+.+.|... .+..+.|+.++...... .........|+|.+++.+|+|.|+|.| |.. +
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44445567788899999999632 12478888644322111 112234567999999999999999999 774 5
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+.++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5677777765
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=66.68 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=33.7
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
..|.|.+++.+|+|.|+|.| |..|..+..+.|.|.+
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 35999999999999999999 9999999999999986
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-10 Score=66.61 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=51.9
Q ss_pred CceEEecCC-----CcEEEEEecC--C-eeEEecce---Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD--L-HILTTNIY---TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~--~-~~~~~~~~---~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.....+ .+|.|.|..+ . .+..+... .+ .-.+|..+.. +..++.+|.|.+++.+|+|.|.|++.
T Consensus 5 L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C~v~ 83 (99)
T cd05886 5 LHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYICEFA 83 (99)
T ss_pred EEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEEEEEE
Confidence 689998532 3799998532 1 22222211 11 1236777763 34578999999999999999999997
Q ss_pred CCC--CeeEEEEEEE
Q psy3125 68 TEP--KMNMAIMLNV 80 (163)
Q Consensus 68 ~~~--~~~~~~~l~V 80 (163)
+.| ..+..+.|.|
T Consensus 84 t~P~g~~~~~~~L~V 98 (99)
T cd05886 84 TFPTGNRESQLNLTV 98 (99)
T ss_pred eCCCCCeEEEEEEEE
Confidence 644 4566666766
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=66.53 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=54.4
Q ss_pred EeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC-----CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 88 RLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 88 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+..|..+.+.|.. .+.+.+.|++++..+...... ....+.|.|.++..+|+|.|+|.| |..|..+..+.|+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 45667888888863 355678998876644321110 123457999999999999999999 9999999999998
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 6
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=66.75 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=45.3
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+. | +.+.|.+.+... ..+.. ...+.. .........+|.|.+++.+|+|.|.|.+.+ .+..+..+
T Consensus 6 L~C~~~g~~~~~~~i~W~~~~~~~--~~~~~---~~~~~~-~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 6 LNCTVLTELNEGVDFQWTYPGKKR--GRGKS---MVTRQS-LSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred EEEEEEeCCCccEEEEEecCCccc--CCceE---eecccc-cccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 68999999 7 899998632211 00100 011111 111112356899999999999999999944 45556665
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5554
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=68.18 Aligned_cols=77 Identities=21% Similarity=0.177 Sum_probs=56.7
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+..|..+.+.|.. .+.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.| |..|.....+.|.|
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 456678888888864 3567788887764322110 00112346999999999999999999 99999999999999
Q ss_pred ecC
Q psy3125 161 DGK 163 (163)
Q Consensus 161 ~~~ 163 (163)
..|
T Consensus 93 ~~~ 95 (95)
T cd05730 93 FAK 95 (95)
T ss_pred EeC
Confidence 765
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.7e-10 Score=67.67 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=51.4
Q ss_pred CceEEecC------C-CcEEEEEec--C--C-eeEE-ecceEe-c--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL------G-RPVSWMRKR--D--L-HILT-TNIYTY-T--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~------~-~~v~W~k~~--~--~-~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+... . ..|.|+|.. . . .++. .+.... . ...|+.+. ....++.+|.|.+++.+|+|.|.|
T Consensus 7 L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD~G~Y~C 85 (106)
T cd05714 7 LPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLEDSGRYRC 85 (106)
T ss_pred EeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHHCEEEEE
Confidence 68998864 2 799999962 1 1 1222 122211 1 12244332 123568999999999999999999
Q ss_pred EeeC-CCCeeEEEEEEEEc
Q psy3125 65 QVNT-EPKMNMAIMLNVDD 82 (163)
Q Consensus 65 ~~~~-~~~~~~~~~l~V~~ 82 (163)
.+.. .......+.|+|..
T Consensus 86 ~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 86 EVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEcCCCceEEEEEEEEEE
Confidence 9954 34456777777764
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=66.26 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|.. .+.+.+.|+.++..+.... ........|.|.+++.+|+|.|+|.| |..|..+..+
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 345677888889998863 3556888998865443211 11125778999999999999999999 8889999999
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=68.64 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 344567778888888863 345678888876533211100112236999999999999999999 99999999998876
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=64.80 Aligned_cols=69 Identities=17% Similarity=0.461 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. .+.++.... .....+.|.|.++..+|+|.|.|.+.+ .+.....+.|
T Consensus 14 l~C~~~~~p~~~v~W~k--~~~~~~-------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 14 LKCPASGNPRPTITWLK--DGKPFK-------KEHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred EEEEcCCCCCCeEEEEE--CCEECc-------ccCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 679999999 9999998 322221 122222211 112457899999999999999999944 4455555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=65.38 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=43.5
Q ss_pred eEEEEeCCCeEEEecC--------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 106 NIYTYTGDARFSVIHP--------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 106 ~~~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
...|++++..+..... .......|.|.+++..|+|.|+|.| |..+..+.++.|.|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 4567776654432211 1123456999999999999999999 88899999999999874
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=66.34 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=49.0
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.....++|.|.
T Consensus 2 ~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 2 ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 456667752 34567888877653321110 0012346999999999999999999 999999999999883
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=65.94 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=49.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.|.. .+.+.+.|+.++..+..... .......|.|++++.+|+|.|+|.| |..|..+..+.|+|.
T Consensus 2 ~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 2 ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 445666643 34566888877654322110 1122356999999999999999999 999999999999984
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=66.07 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=51.6
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCe-----------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-----------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+..|..+.+.|.. .+.+.+.|+.++.. +.+. .......|.|++++.+|+|.|+|.| |..|..
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--GHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe--CCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 345566777777753 34456777765422 2211 1233567999999999999999999 999999
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
+.++.|.|
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 99999976
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-09 Score=65.78 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=52.3
Q ss_pred CceEEecC-----C--CcEEEEEecCC-----eeEEecceE--e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL-----G--RPVSWMRKRDL-----HILTTNIYT--Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~-----~--~~v~W~k~~~~-----~~~~~~~~~--~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+... . ..|.|+|.+.. .++...... . ...+|+.+... ..++.+|.|.+++.+|+|+|.|
T Consensus 7 L~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C 85 (106)
T cd05877 7 LPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLEDYGRYRC 85 (106)
T ss_pred EEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHHCEEEEE
Confidence 68988765 2 67999996432 112111111 1 12367777542 3568899999999999999999
Q ss_pred Eee-CCCCeeEEEEEEEE
Q psy3125 65 QVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 65 ~~~-~~~~~~~~~~l~V~ 81 (163)
.+. ..+.....+.|+|.
T Consensus 86 ~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 86 EVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEecccceEEEEEEEEE
Confidence 994 34456667777765
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.326 Sum_probs=52.9
Q ss_pred eeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...|..+.+.|.. .+.+.+.|++++..+..... .....+.|.|.+++.+|+|.|+|.| |..|..+..+.|+|
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 3456777888853 34567889888775533211 1123467999999999999999999 88898888888875
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-10 Score=67.29 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=43.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEccc-----CcCCCeeEEEEeeCC--CCe
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYA-----QKRDAGIYECQVNTE--PKM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v-----~~~D~G~Y~C~~~~~--~~~ 72 (163)
|.|.+.+.| +.|.|+| ++..+... .+.++.+.. +.+|.|.++ ..+|.|.|+|.+.+. +..
T Consensus 19 l~C~v~g~P~p~i~W~k--~g~~l~~~-----~~~~~~~~~-----~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 19 LNCSAEGEPPPKIEWKK--DGVLLNLV-----SDERRQQLP-----NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred EeeecccCCCCEEEEEE--CCeECccc-----cCcceEEcc-----CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 689999999 9999998 33333211 122344332 234677766 689999999999544 443
Q ss_pred -eEEEEEEE
Q psy3125 73 -NMAIMLNV 80 (163)
Q Consensus 73 -~~~~~l~V 80 (163)
+..+.|.|
T Consensus 87 ~s~~~~l~v 95 (95)
T cd05722 87 VSRTARLTV 95 (95)
T ss_pred EEeeeEEeC
Confidence 55555543
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=65.42 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=49.1
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeC--------------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTG--------------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
..+..|..+.+.|. ..+...+.|+.+ ++|+.+.. .....++|.|.+++.+|+|.|+|.+.+..
T Consensus 7 v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 7 VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 45566777777773 334455667532 23444322 12345789999999999999999995566
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+..++|.|
T Consensus 86 ~~~~~~~l~v 95 (95)
T cd07701 86 VKTSKAYLTV 95 (95)
T ss_pred CccEEEEEEC
Confidence 6688888876
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=65.40 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=50.1
Q ss_pred CceEEecCC----CcEEEEEecCC--eeE-Ee---cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL--HIL-TT---NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~--~~~-~~---~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+...+ ..|.|+|.+.. ..+ .. .+..+.+ .+|..+.... .++.+|.|.+++.+|+|.|.|++..
T Consensus 5 L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 5 LECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred EEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEEEEEe
Confidence 689888653 57999996542 111 11 0111111 3465555422 2688999999999999999999954
Q ss_pred --CCCeeEEEEEEE
Q psy3125 69 --EPKMNMAIMLNV 80 (163)
Q Consensus 69 --~~~~~~~~~l~V 80 (163)
.+.....+.|.|
T Consensus 84 ~~~g~~~~~~~l~V 97 (98)
T cd05718 84 FPQGNRQKVTTLTV 97 (98)
T ss_pred CCCCcEEEEEEEEe
Confidence 345556666665
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=67.36 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ ..+.|+|.... ..+..... .....+|+.+......+.++|.|.+++.+|+|.|.|.+..
T Consensus 18 L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 91 (109)
T cd04983 18 LNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSE 91 (109)
T ss_pred EEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEec
Confidence 689999877 99999986421 11111111 1124678988765456799999999999999999999954
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-10 Score=65.76 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-C-CCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-T-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~-~~~~~~~~~ 77 (163)
|.|.. +.| +.|.|+|.++..... .......|+... ..+|.|.+++.+|+|.|+|.+. + .......+.
T Consensus 16 L~C~~-~~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~ 85 (91)
T cd05871 16 LECLP-KSPQASVKWLFQRGGDQRK---EEVKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYT 85 (91)
T ss_pred EEEEC-CCCCceEEEEEECCCCCcc---ccccccccEEEe------cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEE
Confidence 68996 467 999999854322111 011123455543 2459999999999999999994 3 333345667
Q ss_pred EEEEc
Q psy3125 78 LNVDD 82 (163)
Q Consensus 78 l~V~~ 82 (163)
|.|.+
T Consensus 86 l~v~~ 90 (91)
T cd05871 86 LHVIE 90 (91)
T ss_pred EEEec
Confidence 77764
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=64.48 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=43.5
Q ss_pred CCCceeEEEEeCCCeEE-------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFS-------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+. +.. .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 9 G~P~P~v~W~k~~~~i~~~~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTYNTDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred ecCCCeEEEEECCEECCCCCCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 34456777887754332 211 1123446999999999999999999 99999999999976
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-10 Score=65.04 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=41.2
Q ss_pred CCceeEEEEeCCCe-----EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 102 LLTTNIYTYTGDAR-----FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.+.+.+.|++++.. +... ....|.|++++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 10 DPVPTVLWRKEDGELPKGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CCCCEEEEEECCccCCCCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 34456788776542 2222 2335999999999999999999 99999999998876
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-10 Score=65.45 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+.++.+.|.
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 10 YPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred eCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 345677888876543211111122356999999999999999999 988988888887764
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=62.79 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred EEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.+.|. ..+.+.+.|++++..+ .+.. ......|.|.++..+|+|.|+|.| |..|..+.++.|.|
T Consensus 3 ~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 44443 3455678888776543 2222 233567999999999999999999 99999999998876
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-10 Score=64.54 Aligned_cols=68 Identities=19% Similarity=0.079 Sum_probs=47.7
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+.++.|+|
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 2 GDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 456666742 345678888876543211100 011235999999999999999999 99999999999986
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-10 Score=65.43 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..|.|.+++.+|+|.|+|.| |..|..+.++.|.|.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 46999999999999999999 999999999999984
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=65.46 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=39.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| +.|.|+| +...+. ....|+.+. +..|.|.++. .+|+|.|+|.+.+
T Consensus 24 l~C~a~G~P~P~i~W~k--~~~~i~------~~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 24 VNCRARANPFPIYKWRK--NNLDID------LTNDRYSMV------GGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred EeCcCccCCCCEEEEEE--CCEEcc------CCCCeEEEE------CCEEEECcCCcCCCCEEEEEEEEe
Confidence 689999999 9999998 322221 123466543 2469999985 6999999999944
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=64.51 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
|+.+.+..|..+.+.|. ..+.+.+.|++++..+ .+.... .....|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-GKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-CCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 44567788999999996 3456788999886533 221111 22357999999999999999999 99999999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 888876
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=66.69 Aligned_cols=71 Identities=17% Similarity=0.407 Sum_probs=48.8
Q ss_pred CceEEecCC-----CcEEEEEecC-----CeeEEecc-eEec-C----CCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD-----LHILTTNI-YTYT-G----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~-----~~~~~~~~-~~~~-~----~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.... ..|.|..... ..++...+ ..+. . .+|..+..+...++.+|.|.+++.+|+|+|+|
T Consensus 18 L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C 97 (116)
T cd05879 18 LSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTC 97 (116)
T ss_pred EEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEE
Confidence 689998643 6899954211 12333322 2322 1 24888877666779999999999999999999
Q ss_pred EeeCCCC
Q psy3125 65 QVNTEPK 71 (163)
Q Consensus 65 ~~~~~~~ 71 (163)
++.+.+.
T Consensus 98 ~v~n~p~ 104 (116)
T cd05879 98 DVKNPPD 104 (116)
T ss_pred EEEcCCC
Confidence 9976443
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=65.21 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=43.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC-CCCe-eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT-EPKM-NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~-~~~~-~~~~ 76 (163)
|.|.+.|.| +.|.|+| ++..+.. ..+.++.+. +.+|.|.++. .+|+|.|+|.+.+ .+.. +..+
T Consensus 24 l~C~a~g~P~p~i~W~~--~g~~l~~-----~~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a 90 (94)
T cd05850 24 LGCRARASPPATYRWKM--NGTEIKF-----APESRYTLV------AGNLVINNPQKARDAGSYQCLAINRCGTVVSREA 90 (94)
T ss_pred EEeEceeCCCCEEEEEE--CCEECcc-----CCCceEEEE------CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEE
Confidence 689999999 9999998 3333321 123455544 2358998865 5999999999944 4433 3444
Q ss_pred EE
Q psy3125 77 ML 78 (163)
Q Consensus 77 ~l 78 (163)
.|
T Consensus 91 ~l 92 (94)
T cd05850 91 NL 92 (94)
T ss_pred EE
Confidence 44
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=67.55 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred EEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCce------EeeCCCeEEEecCCC---C-ceeEEEEeCCCeE
Q psy3125 48 NMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGA------RLSAGPLLNFAFPDL---L-TTNIYTYTGDARF 116 (163)
Q Consensus 48 ~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~------~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ 116 (163)
+|.|.+++.+|+|.|.|++.+ .+.....+.|.|..+|... ....+..+.+.|... + ...+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 699999999999999999954 3456677788888765321 111345577888642 2 2478898876421
Q ss_pred E----------Ee---cCCC---CceEEEEecccCcCCCeeEEEEc
Q psy3125 117 S----------VI---HPQN---SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 117 ~----------~~---~~~~---~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
. .. .... ...+.|.|..-...+.+.|.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V 127 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRV 127 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEE
Confidence 1 00 0011 11345777766667788999999
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=65.45 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCC--CCeEEEEEcccCcCC-CeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQN--SDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~v~~~D-~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.|.| + .|.|++ +...+..+ .++||.+..... ....+|.|.++..+| .|.|.|.+ |..+....
T Consensus 21 L~C~~~g~P~P~~v~W~~--~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 21 VECFIFSTPPPDRIVWTW--KENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEcccCCCCEeEEEE--CCEEccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccE
Confidence 689999999 7 599998 33222211 135777664211 223589999999955 89999999 44555555
Q ss_pred EEEE
Q psy3125 75 AIML 78 (163)
Q Consensus 75 ~~~l 78 (163)
.+.|
T Consensus 94 ~~~L 97 (98)
T cd05758 94 IISL 97 (98)
T ss_pred EEEe
Confidence 5544
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=65.54 Aligned_cols=74 Identities=16% Similarity=0.354 Sum_probs=42.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEc--ccCcCCCeeEEEEee-CCCC-eeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKID--YAQKRDAGIYECQVN-TEPK-MNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~--~v~~~D~G~Y~C~~~-~~~~-~~~~ 75 (163)
|.|.+.|.| +.|.|+| ++..+..+.. ....+..+.. ......+.|. .++.+|+|.|+|.+. ..+. .+..
T Consensus 21 l~C~~~g~P~p~i~W~k--~g~~l~~~~~--~~~~~~~~~~--~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~ 94 (100)
T cd07693 21 LNCKAEGRPTPTIQWLK--NGQPLETDKD--DPRSHRIVLP--SGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRN 94 (100)
T ss_pred EEeeCCcCCCCEEEEEE--CCEECccccC--CCCcceEEec--CCcEEEEEeeccCCCcCcCEEEEEEEEccccceecce
Confidence 689999999 9999998 3333321100 0112222222 1222333333 347999999999994 4444 5566
Q ss_pred EEEEE
Q psy3125 76 IMLNV 80 (163)
Q Consensus 76 ~~l~V 80 (163)
+.|.|
T Consensus 95 ~~l~v 99 (100)
T cd07693 95 ASLEV 99 (100)
T ss_pred EEEEe
Confidence 66665
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-10 Score=64.24 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=44.1
Q ss_pred CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++++..+.... ........|.|++++.+|+|.|+|.| |..|..+..+.|.|+
T Consensus 10 ~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 10 LPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred ecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4556788887765332110 01122457999999999999999999 999999999999885
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-10 Score=66.83 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=43.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceE-----ecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYT-----YTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~-----~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|...+.+ +.|.|++.+.+.++...... ....+|+.+... ...++++|.|.+++.+|+|+|.|.+.+
T Consensus 12 L~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~ 86 (94)
T cd07690 12 LPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVED 86 (94)
T ss_pred EEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECC
Confidence 689999888 99999863222111100000 012455555431 124578899999999999999999943
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=63.97 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|..
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS--TEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE--cCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34456778889999999963 45567899887542 22221 223467999999999999999999 999998
Q ss_pred cEEEEE
Q psy3125 153 NMAIML 158 (163)
Q Consensus 153 ~~~~~L 158 (163)
+..+.|
T Consensus 86 ~~~~~l 91 (92)
T cd05747 86 EAQFTL 91 (92)
T ss_pred eEEEEe
Confidence 888776
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=64.87 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=44.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l 78 (163)
|+|.+.+.++.+.|+|.+.. +..... ...|+.... ..|.|.+++.+|+|.|+|.+.+. ........|
T Consensus 16 L~C~~~~p~~~i~W~k~~~~--~~~~~~---~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 16 LECSPKSNLASVVWLFQGGP--LQRKEE---PEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEEeCCCCCceEEEEECCcc--cccccC---cCceEEEcC------CCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 68999883399999984322 111100 123444332 23999999999999999999543 334455556
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|.+
T Consensus 85 ~V~~ 88 (89)
T cd04979 85 NVLE 88 (89)
T ss_pred EEec
Confidence 6653
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=63.30 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=48.8
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCC--------------eEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
..+..|..+.+.|.. .+.+.+.|++++. |+.+.. .....+.|.|.+++.+|+|.|+|.+.+..
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~~~t~~ 85 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCSIFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEEEEeec
Confidence 456667777777752 3345677765543 332222 12245789999999999999999996666
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+..+.|.|
T Consensus 86 ~~~~~~~~~v 95 (95)
T cd05882 86 VRTAKATVTV 95 (95)
T ss_pred cccEEEEEEC
Confidence 6666776654
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=64.46 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=50.4
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEe---cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTT---NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|...... ..|.|+|.+.+ .+... .+.... ..+|+.+.. .+.++.+|.|.+++.+|+|.|.|.+...|
T Consensus 6 L~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p 84 (97)
T cd05846 6 LSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS-LGLNSTSITIWNVTLEDEGCYKCIFNTFP 84 (97)
T ss_pred EEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC-CCCCccEEEEeCCceeeeEEEEEEEEeCC
Confidence 679877555 57999985432 22211 111111 124555542 34568899999999999999999996544
Q ss_pred --CeeEEEEEEE
Q psy3125 71 --KMNMAIMLNV 80 (163)
Q Consensus 71 --~~~~~~~l~V 80 (163)
.....+.|+|
T Consensus 85 ~g~~~~~~~L~v 96 (97)
T cd05846 85 DGSKSGTMCLTV 96 (97)
T ss_pred CCCeeeEEEEEE
Confidence 4566666766
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=64.97 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=53.7
Q ss_pred eEeeCCCeEEEecCCC-------CceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 87 ARLSAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
..+..|..+.+.|... +.+.+.|++++....... +.......|.|.++..+|+|.|+|.+ |..+..+.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 3455688888999533 356789998875432211 01112356999999999999999999 88899999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 998876
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=62.90 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=49.0
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|++++..+...... ......|.|.+++..|+|.|+|.| |..|....++.|+|
T Consensus 2 ~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 2 EDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 34556664 3456788888877654322111 011236999999999999999999 99999999999998
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=63.83 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=32.9
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..|.|.+++.+|+|.|+|.| |..|..+.+++|+|.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 57999999999999999999 999999999999983
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-09 Score=63.82 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=53.5
Q ss_pred CceEEecCC-----------CcEEEEEecC---CeeE-EecceEe---cCCCeEEEecc-CCCCeEEEEEcccCcCCCee
Q psy3125 1 MACTVMGLG-----------RPVSWMRKRD---LHIL-TTNIYTY---TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGI 61 (163)
Q Consensus 1 l~C~~~~~~-----------~~v~W~k~~~---~~~~-~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~ 61 (163)
|+|.+...+ ..|.|+|.+. ..++ ..++... .-.+|+.+... ...++.+|.|.+++.+|+|+
T Consensus 7 LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~ 86 (110)
T cd05878 7 LPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGV 86 (110)
T ss_pred EeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEE
Confidence 688887533 5699999632 1222 2222211 12358877542 23568899999999999999
Q ss_pred EEEEeeC-CCCeeEEEEEEEEc
Q psy3125 62 YECQVNT-EPKMNMAIMLNVDD 82 (163)
Q Consensus 62 Y~C~~~~-~~~~~~~~~l~V~~ 82 (163)
|.|.+.. .......+.|+|..
T Consensus 87 Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 87 YRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred EEEEEEeCCCcceEEEEEEEEE
Confidence 9999954 34556777777764
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=63.03 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=46.8
Q ss_pred CceEEecCC-C--cEEEEEecC---CeeEEec---ceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-R--PVSWMRKRD---LHILTTN---IYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~---~~~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|+|.+.... . .|.|+|... ...+... ...+ ...+|+.+......+.++|.|.+++.+|+|.|.|.+
T Consensus 4 l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 4 LSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 689998776 3 899999643 1222221 1122 235788887654467899999999999999999974
|
|
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-09 Score=64.41 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=52.6
Q ss_pred CceEEec------CC--CcEEEEEecC------CeeEEecceE--e--cCCCeEEEeccC-CCCeEEEEEcccCcCCCee
Q psy3125 1 MACTVMG------LG--RPVSWMRKRD------LHILTTNIYT--Y--TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGI 61 (163)
Q Consensus 1 l~C~~~~------~~--~~v~W~k~~~------~~~~~~~~~~--~--~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~ 61 (163)
|+|.+.- .+ +.|.|.|... ..++...+.. + .-.+|.++...+ ..++.+|.|.+++.+|+|.
T Consensus 7 LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~ 86 (110)
T cd05902 7 LPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGT 86 (110)
T ss_pred EeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEE
Confidence 6899662 21 7999998621 1112211211 1 124688887533 2468999999999999999
Q ss_pred EEEEeeC-CCCeeEEEEEEEE
Q psy3125 62 YECQVNT-EPKMNMAIMLNVD 81 (163)
Q Consensus 62 Y~C~~~~-~~~~~~~~~l~V~ 81 (163)
|.|.+.. .......+.|+|.
T Consensus 87 Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 87 YRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEECCcccEEEEEEEEE
Confidence 9999954 3345667777775
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=66.38 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=53.0
Q ss_pred EeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecC-----C-----CCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 88 RLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHP-----Q-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 88 ~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
.+..+..+.+.|. ..+.+.+.|++++..+.-... . ......|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 3444555666664 445668899988765431110 0 112357999999999999999999 99999999
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
++.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 9999886
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=60.69 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred EEEecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 95 LNFAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 95 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+.+.|. ..+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 345553 3455678888776533211000 001224889999999999999999 99999999999976
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-10 Score=62.75 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=43.1
Q ss_pred CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++.+..+.... ........|.|.+++.+|+|.|+|.| |..|..+..+.|.|+
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 10 LPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred ecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 3445678877765332110 01122346999999999999999999 999999999999884
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=62.94 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=38.9
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+..+.|.|.| ++..+..+ .+|+.+.. ..|.|.+++.+|+|.|+|.+...
T Consensus 16 L~C~~~~~~~~i~W~~--ng~~i~~~------~~r~~~~~------~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 16 LKCSPKSNLARVVWKF--DGKVLTPE------SAKYLLYR------DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEECCCCCCeEEEEE--CCEECCCC------CceEEEEC------CcEEEeCCCHHHCEEEEEEEEec
Confidence 6799865338999998 44333211 24665542 35999999999999999999543
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=62.65 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=52.2
Q ss_pred CceEEecCC-------------CcEEEEEecC---CeeEE-ecceE-ec--CCCeEEEeccC-CCCeEEEEEcccCcCCC
Q psy3125 1 MACTVMGLG-------------RPVSWMRKRD---LHILT-TNIYT-YT--GDARFSVIHPQ-NSDEWNMKIDYAQKRDA 59 (163)
Q Consensus 1 l~C~~~~~~-------------~~v~W~k~~~---~~~~~-~~~~~-~~--~~~r~~~~~~~-~~~~~~L~i~~v~~~D~ 59 (163)
|+|.+.... +.|.|+|... ..++. .++.. +. ..+|+++...+ ..++.+|.|.+++.+|+
T Consensus 7 LpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDs 86 (112)
T cd05900 7 IPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDS 86 (112)
T ss_pred EeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccC
Confidence 578877432 5899999632 22332 22221 11 12488886532 34689999999999999
Q ss_pred eeEEEEeeCC-CCeeEEEEEEEE
Q psy3125 60 GIYECQVNTE-PKMNMAIMLNVD 81 (163)
Q Consensus 60 G~Y~C~~~~~-~~~~~~~~l~V~ 81 (163)
|+|+|.+... ......+.|+|.
T Consensus 87 G~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 87 GTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred EEEEEEEecCCCCceeEEEEEEE
Confidence 9999999643 445555566654
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=62.22 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=53.0
Q ss_pred CceEEecCC------------CcEEEEEec---------CCeeEE-ecceEec---CCCeEEEeccC-CCCeEEEEEccc
Q psy3125 1 MACTVMGLG------------RPVSWMRKR---------DLHILT-TNIYTYT---GDARFSVIHPQ-NSDEWNMKIDYA 54 (163)
Q Consensus 1 l~C~~~~~~------------~~v~W~k~~---------~~~~~~-~~~~~~~---~~~r~~~~~~~-~~~~~~L~i~~v 54 (163)
|+|.+.-.| ..|.|+|.. ...++. .++.... -.+|..+...+ ..++.+|.|.++
T Consensus 7 LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v 86 (117)
T cd05901 7 LPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKL 86 (117)
T ss_pred EeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEccc
Confidence 689888332 589999851 122332 2322221 23577776432 246899999999
Q ss_pred CcCCCeeEEEEee-CCCCeeEEEEEEEE
Q psy3125 55 QKRDAGIYECQVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 55 ~~~D~G~Y~C~~~-~~~~~~~~~~l~V~ 81 (163)
+.+|+|.|.|++. ........+.|+|.
T Consensus 87 ~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 87 RASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999994 34455666677765
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=61.44 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=44.7
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecC-----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+.|. ..+.+.+.|++++........ .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|.
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred eEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 4453 344567888877642110000 0112236999999999999999999 989999999999883
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=61.06 Aligned_cols=48 Identities=27% Similarity=0.503 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 112 GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
.+.||.... .....++|+|++++.+|+|.|+|++...+..+..+++.|
T Consensus 48 ~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~~ 95 (95)
T cd05881 48 KDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTITV 95 (95)
T ss_pred CCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEEC
Confidence 456776654 235688999999999999999999977788777777764
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=61.01 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCCCceeEEEEeCCCeEEEec---------CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 100 PDLLTTNIYTYTGDARFSVIH---------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...+.+.+.|++++..+.-.. ......+.|.|.++..+|+|.|+|.| |..|.++.++.++.
T Consensus 8 ~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 345667888998876442111 11123567999999999999999999 99999999888763
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=60.59 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=46.9
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|++.+......... ......|.|..+..+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 2 QRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 45666675 2355678887654433211100 012346999999999999999999 99999999988876
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=64.71 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=48.4
Q ss_pred CceEEecC-C-CcEEEEEecCC----eeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL----HILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~----~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+... + ..+.|+|.... .++..... .....+|+.+......+.++|.|.+++.+|+|.|.|.+...
T Consensus 11 L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 89 (105)
T cd00099 11 LSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLS 89 (105)
T ss_pred EEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 68999987 5 89999996431 12221111 11235688877654347899999999999999999999543
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=62.52 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.1
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
....|.|.+++.+|+|.|+|.| |..+..+.++.|.|
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 3567999999999999999999 88888888888876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCc--cEEEEEEEec
Q psy3125 102 LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM--NMAIMLNVDG 162 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~--~~~~~L~V~~ 162 (163)
.+.+.+.|++++..+..... .......|.|.+++++|+|.|+|.| |..|.. +..++|.|..
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 10 HPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred cCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 34567888887654321110 0112346999999999999999999 888876 5677777753
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=63.66 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
..+..|..+.+.|.. . .+.+.|++++..+.... ........|.|.+++++|+|.|+|.| |..|. .+..+.|.|.
T Consensus 13 ~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 13 QPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91 (91)
T ss_pred cccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEeC
Confidence 356677888888853 3 56777877654321100 00112346999999999999999999 88875 5668888873
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=62.62 Aligned_cols=57 Identities=21% Similarity=0.460 Sum_probs=39.9
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.| ..+.|+| ++..+. . ...+|.|.++ .+|+|.|+|++.+. ..+..+.|
T Consensus 20 L~C~~~~~p~~~~~~W~k--ng~~l~---------------~----~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l 76 (78)
T cd05752 20 LTCNGFNSPEQNSTQWYH--NGKLLE---------------T----TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHL 76 (78)
T ss_pred EEEeCCCCCCCccEEEEE--CCEEee---------------c----cCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEE
Confidence 689999977 5799998 333221 0 1335899999 99999999999543 44555555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 77 ~V 78 (78)
T cd05752 77 EV 78 (78)
T ss_pred eC
Confidence 43
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=60.81 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
..+.|.|++++.+|+|.|+|.+...+..+..+.|.|
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 456799999999999999999944345677777765
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=60.15 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred CCCceEeeCCCeEEEecCCCC---ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPDLL---TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 159 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~ 159 (163)
.|+...+..|..+.+.|.... ...+.|++++..+.. ....|.|.++ .+|+|.|+|.|.+ ...+..++|.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~-~~~S~~v~l~ 77 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQG-SSLSDPVHLE 77 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCC-CcCCCCEEEe
Confidence 455677889999999997532 245889998765421 2345999999 9999999999933 3777777776
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 78 V 78 (78)
T cd05752 78 V 78 (78)
T ss_pred C
Confidence 5
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.9e-09 Score=64.31 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=51.8
Q ss_pred CceEEe-cCC-CcEEEEEecC----CeeE-Ee---cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRD----LHIL-TT---NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~----~~~~-~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|... ... ..+.|++... ..++ .. ..... ...+|+.+......++++|.|.+++.+|+|.|.|++..
T Consensus 21 L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~ 100 (114)
T PF07686_consen 21 LPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVST 100 (114)
T ss_dssp EEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEE
T ss_pred EEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEE
Confidence 579999 445 8999999543 1122 11 11111 12457777765556799999999999999999999954
Q ss_pred CC--CeeEEEEEEE
Q psy3125 69 EP--KMNMAIMLNV 80 (163)
Q Consensus 69 ~~--~~~~~~~l~V 80 (163)
.. .....+.|.|
T Consensus 101 ~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 101 SNEQSFGNGTKLTV 114 (114)
T ss_dssp SSEEEEEEEEEEEE
T ss_pred CCCCEECCcEEEEC
Confidence 32 2334444544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=63.67 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=42.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEe-----cceEec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTT-----NIYTYT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~-----~~~~~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+...+ ..|.|+|.+.+..... +..... ..+|+.+.. +++|.|.+++.+|+|.|+|++....
T Consensus 6 L~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-----~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 6 LPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-----NGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred EEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-----CceEEEccCCchhcEEEEEEEEcCC
Confidence 578877766 8999998654322110 011111 134555543 4889999999999999999996543
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-09 Score=60.92 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
+....+..|..+.+.|.. .+...+.|++.+..+.. ........|.|.+++.+|+|.|+|.| |..|..+..+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 445677889999999964 24567899888754211 11122456999999999999999999 888888888776
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=60.16 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCC---eEEEecCC------CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDA---RFSVIHPQ------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++... .+.+.... ......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred CcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 445666653 3445677876521 22211110 012356999999999999999999 99999999999976
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-09 Score=61.79 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=52.6
Q ss_pred CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCc-cEEEE
Q psy3125 85 RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIM 157 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~ 157 (163)
....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|.. +..+.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 34567788889999953 345678898876543221100 011346999999999999999999 877764 66777
Q ss_pred EEE
Q psy3125 158 LNV 160 (163)
Q Consensus 158 L~V 160 (163)
|.|
T Consensus 84 l~V 86 (86)
T cd05724 84 LSV 86 (86)
T ss_pred EEC
Confidence 765
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=60.62 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=43.7
Q ss_pred CCCceeEEEEeCCCeEEEec--------C---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFSVIH--------P---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+.... . .......|.|.+++..|+|.|+|.| |..|.++..+.|..
T Consensus 9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 44567788888765332111 0 1123456999999999999999999 99999999888763
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=63.20 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=44.7
Q ss_pred CceEEecCC-----CcEEEEEecC--C---eeEEecceE-ec-CC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD--L---HILTTNIYT-YT-GD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~--~---~~~~~~~~~-~~-~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.... ..|.|++... . .++...... .. .. +|+.+......++.+|.|.+++.+|+|.|.|
T Consensus 18 L~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 97 (116)
T cd05715 18 LKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTC 97 (116)
T ss_pred EEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCEEEEE
Confidence 689887542 4699987532 1 122222111 11 12 4566655444568999999999999999999
Q ss_pred EeeCCC
Q psy3125 65 QVNTEP 70 (163)
Q Consensus 65 ~~~~~~ 70 (163)
++.+.+
T Consensus 98 ~v~~~~ 103 (116)
T cd05715 98 DVKNPP 103 (116)
T ss_pred EEEeCC
Confidence 996543
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-09 Score=60.72 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=42.4
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
+.|. ..+.+.+.|++++..+...... -.....|.|.+++.+|+|.|+|.| |..|..+.++.|.
T Consensus 3 L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 3 IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred eEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 4454 2344567888765432211100 011346999999999999999999 9999998888773
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=62.44 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred eeCCCeEEEecCCC-------CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+..|....+.|+.. +.+.+.|++++..+............|.|.++..+|+|.|+|.| +..+.....+++.+
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 44566677777532 35688999887644311111013356999999999999999999 87776666555444
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-09 Score=61.25 Aligned_cols=55 Identities=25% Similarity=0.538 Sum_probs=38.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc-CCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~~ 68 (163)
|.|.+.+.| +.|.|+| +...+.. ....++.+. +..|.|.++.. +|+|.|+|.+.+
T Consensus 24 l~C~~~g~p~p~i~W~k--~~~~l~~-----~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 24 LNCRARGSPPPTYRWLM--NGTEIDD-----EPDSRYSLV------GGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred EEEeeeEcCCCEEEEEE--CCEECCC-----CCCCCEEEE------CCEEEEecCCccCCCEEEEEEEEc
Confidence 679999999 9999998 3322211 123345443 23689998875 999999999954
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-09 Score=62.08 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=47.6
Q ss_pred CceEEecC-C-CcEEEEEecCC---eeEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---HILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+... . ..+.|+|.... .++.. +.......+|+.+......+.++|.|.+++.+|+|.|.|.+...+
T Consensus 12 l~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 12 IPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 57988763 4 78899986432 22211 111112357888765445678999999999999999999995543
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=56.33 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=35.6
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+ .+.+ ..+.|+|.+....... .............+|.|.+++.+|+|.|+|.|
T Consensus 6 L~C~~~~~~~~~~~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 6 LTCSVSSGPPPTTVTWSKNGQSLPEGS---------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEESSSTSEEEEEETTTTTSEEE---------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEeecCCCCCCcEEEEEECCccccCcc---------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 67999 5556 9999998543322211 11111100111124999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-09 Score=59.84 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=42.7
Q ss_pred CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.+.|++++..+.... .......|.|.++..+|+|.|+|.| |..|..+...++.|.
T Consensus 9 G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 34567788988876443111 1112346999999999999999999 988877776666654
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=58.89 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=41.8
Q ss_pred EEecCC---CCceeEEEEeCCCeEEEecC--------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 96 NFAFPD---LLTTNIYTYTGDARFSVIHP--------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 96 ~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+.++.
T Consensus 2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 355542 24457778887664432111 1123467999999999999999999 88887776654
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=59.70 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---------CCCCceEEEEe--cccCcCCCeeEEEEc-CC
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---------PQNSDEWNMKI--DYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i--~~v~~~D~G~Y~C~a-~~ 148 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+.... ...+....+.| ..+..+|+|.|+|.| |.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~ 86 (100)
T cd07693 7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNS 86 (100)
T ss_pred cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcc
Confidence 3445677788899999964 4556789998865443210 01111222333 334789999999999 88
Q ss_pred CCC-ccEEEEEEE
Q psy3125 149 EPK-MNMAIMLNV 160 (163)
Q Consensus 149 ~~~-~~~~~~L~V 160 (163)
.|. .+..+.|.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 888 788888887
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=59.92 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=45.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+.+ ..+.|...+....... .....|..... ......+|.|.+++.+|+|.|+|.+.+ .+.....+
T Consensus 6 L~C~~~~~~~~~~~~~W~~p~~~~~~~~----~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 6 LNCTARTELNVGIDFQWDYPGKKEQRAK----SVSENRRSLQE-HTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred EEEEEEeCCCCcEEEEEEcCCcccccce----ecccccccccc-cceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 679998765 5779976332211000 00011111110 112356799999999999999999954 44455666
Q ss_pred EEEEEc
Q psy3125 77 MLNVDD 82 (163)
Q Consensus 77 ~l~V~~ 82 (163)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 677653
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-09 Score=61.05 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=52.3
Q ss_pred ceEeeCCCeEEEecCC-CCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEE
Q psy3125 86 GARLSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIML 158 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L 158 (163)
...+..|..+.+.|.. .+...+.|++++....... +.......|.|.+++.+|+|.|+|.| + ..+..+..+.|
T Consensus 5 ~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 5 VVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEEEECCCcEEEEEeCCCCCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 3456778889999964 3445789998875432210 00111234999999999999999999 4 34566777888
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
+|..
T Consensus 85 ~V~~ 88 (89)
T cd04979 85 NVLE 88 (89)
T ss_pred EEec
Confidence 8753
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=59.64 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=44.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCee--EEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN--MAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~l 78 (163)
|+|...+..+.|.|++.+ .. +..+.|+..... .|.|..++.+|+|.|.|.+...+... ....|
T Consensus 16 L~C~~~s~~A~v~W~~ng--~~-------l~~~~r~~~~~~------GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l 80 (85)
T cd05872 16 LPCQLRSNLASPVWLFNG--TP-------LNAQFSYRVGTD------GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSL 80 (85)
T ss_pred EECCCCCCCccEEEEECC--cc-------cCCCcceEEeCC------CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEE
Confidence 578888877999999832 21 234566665532 28899999999999999995443333 34445
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 81 ~v~ 83 (85)
T cd05872 81 NVV 83 (85)
T ss_pred EEe
Confidence 443
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=56.48 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=48.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.+ +.+.|++.+ ... .....++.+... ....+|.|.+++.+|+|.|.|.+.. .......+.|
T Consensus 14 l~C~~~~~~~~~~~W~~~~-~~~-------v~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 14 LSCEVSGSPPPEVTWYKQG-GKL-------LAESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEEEccCCCCeEEEEECC-CEE-------cCCCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 579999987 999999841 221 123556666652 2267899999999999999999953 3333444555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 54
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=56.48 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=48.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.+ +.+.|++.+ ... .....++.+... ....+|.|.+++.+|+|.|.|.+.. .......+.|
T Consensus 14 l~C~~~~~~~~~~~W~~~~-~~~-------v~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 14 LSCEVSGSPPPEVTWYKQG-GKL-------LAESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEEEccCCCCeEEEEECC-CEE-------cCCCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 579999987 999999841 221 123556666652 2267899999999999999999953 3333444555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 54
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=61.42 Aligned_cols=67 Identities=22% Similarity=0.495 Sum_probs=45.4
Q ss_pred CceEEecCC--CcEEEEEecCC---e-e---EEe---cceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---H-I---LTT---NIYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~-~---~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.. ..+.|+|+..+ . + +.. +..... ..+||.+....+.+.+.|.|.+++.+|+|.|.|.
T Consensus 11 L~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa 90 (107)
T cd07700 11 LSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCM 90 (107)
T ss_pred EEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEEEEEe
Confidence 679998744 78999997543 1 1 111 111111 1468877544445688999999999999999999
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
..
T Consensus 91 ~~ 92 (107)
T cd07700 91 TV 92 (107)
T ss_pred Ec
Confidence 84
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=62.86 Aligned_cols=66 Identities=23% Similarity=0.440 Sum_probs=45.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeE-Eecc--eEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HIL-TTNI--YTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~-~~~~--~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ + ..|.|+|+..+ ..+ .... ... ...+||.+.... ...++|.|.+++.+|+|.|.|.+..
T Consensus 18 l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 18 LRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred EEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCChhhCEEEEEEeeC
Confidence 6899988 7 89999996432 122 1111 111 124688876532 3578999999999999999999954
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=58.54 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=51.2
Q ss_pred ceEeeCCCeEEEecCCC---CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPDL---LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V 160 (163)
...+..|..+.+.|... ......|++++..+.. ......|.|.+++.+|+|.|+|.| +..+ ..|..+.|.|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 34678899999999852 3456888887754421 123456999999999999999999 5553 4566666654
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=60.05 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. . ..+.|+|+..+ . ++...... ....+||.+.. ..+..+|.|.+++.+|+|+|.|.+..
T Consensus 11 l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 11 ITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEEEEEcc
Confidence 57999876 5 78999997532 1 22211111 11246888765 34688999999999999999999853
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=63.31 Aligned_cols=68 Identities=18% Similarity=0.373 Sum_probs=46.8
Q ss_pred CceEEec--CC-CcEEEEEecCCe----eEEe-cc-eE-e---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMG--LG-RPVSWMRKRDLH----ILTT-NI-YT-Y---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~--~~-~~v~W~k~~~~~----~~~~-~~-~~-~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+ .+ ..|.|+|...+. ++.. .. .. . ...+||.+........++|.|.+++.+|+|.|.|.+.
T Consensus 18 l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 97 (116)
T cd04982 18 ISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYW 97 (116)
T ss_pred EEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEe
Confidence 6799988 55 899999964321 1211 11 11 1 1246888876433368999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 98 ~ 98 (116)
T cd04982 98 E 98 (116)
T ss_pred c
Confidence 3
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=61.31 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=44.1
Q ss_pred CceEEecCC-----CcEEEEEec---CC--eeEEecceE-ecCC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKR---DL--HILTTNIYT-YTGD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~---~~--~~~~~~~~~-~~~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|+|.+...+ ..|.|++.. .. .++...... .... +|+.+......++.+|.|.+++.+|+|.|.|.
T Consensus 18 L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (115)
T cd05880 18 LKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQ 97 (115)
T ss_pred EEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEEEEEE
Confidence 689987543 359997632 11 233222211 1122 45555544445688999999999999999999
Q ss_pred eeCCC
Q psy3125 66 VNTEP 70 (163)
Q Consensus 66 ~~~~~ 70 (163)
+.+.+
T Consensus 98 v~~~~ 102 (115)
T cd05880 98 VKNPP 102 (115)
T ss_pred EEeCC
Confidence 96533
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-08 Score=57.12 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=29.6
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V~ 161 (163)
...|.|.+++.+|+|.|.|.| +... ..+.++.|.|-
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 567999999999999999999 6554 56777777763
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=58.82 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=29.6
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCc-cEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~L~V 160 (163)
..|.|.++..+|+|.|+|.| |..|.. +..+.|.|
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 56999999999999999999 887766 77888875
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=57.83 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCceeEEEEeCCCeEEEecC-------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 102 LLTTNIYTYTGDARFSVIHP-------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+..+.
T Consensus 11 ~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 11 YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 34567788877654432211 1123467999999999999999999 88888776654
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=57.53 Aligned_cols=64 Identities=6% Similarity=0.075 Sum_probs=43.8
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+.+.|. ..+.+.+.|++++..+............|.|.+++ |+|.|+|.| |..|..+.++.|
T Consensus 2 ~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 2 GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 45677775 35667888988875432111111123469999974 899999999 999988888776
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=63.19 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=47.4
Q ss_pred CceEEecC-C-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+... . ..|.|+|...+ ..+....... ...+||.+......++++|.|.+++.+|+|.|.|.+..
T Consensus 19 L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 19 LNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 68998865 4 78999996432 1222111111 22579988754445689999999999999999999964
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-08 Score=59.93 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=50.5
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeE-------EEec--CCCCceEEEEecccC-cCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARF-------SVIH--PQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
|..+.+.|.. .+.+.+.|++++..+ .... ........|.|.++. .+|+|.|+|.| |..|.....+.|
T Consensus 23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 4556777753 445677887765432 1111 111124679999997 69999999999 999999999999
Q ss_pred EEecC
Q psy3125 159 NVDGK 163 (163)
Q Consensus 159 ~V~~~ 163 (163)
.|..+
T Consensus 103 ~~~~~ 107 (109)
T cd05773 103 VSTSR 107 (109)
T ss_pred EecCC
Confidence 99764
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=59.17 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=43.3
Q ss_pred CeEEEecC--CCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|+.++. ++.+.. ......|.|++++.+|+|.|+|.| |..|.....+.+.+
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 2 ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 34555554 23445677766543 232222 123567999999999999999999 88887776665544
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=58.63 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred CceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 103 LTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|. .+..+.|.|+
T Consensus 11 P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 11 PDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred cCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4457788876543221000 0012345999999999999999999 88776 5788888874
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=57.91 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred CceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 103 LTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.....+.|.|+.
T Consensus 11 P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 11 PLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 3456777766543221100 0112346999999999999999999 9999999999999974
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-08 Score=59.77 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=45.0
Q ss_pred CceEEecCC--CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.. ..+.|+|+.. ...+....... ...+||.+.. ....++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 20 ISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHHCEEEEEEEeC
Confidence 679998665 7899999642 22222221111 1235787754 34678999999999999999999843
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=68.80 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=39.7
Q ss_pred CceEEe-----cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-----GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-----~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+. +.| +.|.|+| +...+ ..++|+.+.. ++.+|.|.+++.+|+|.|+|.+..
T Consensus 149 L~C~~~~~~~~~~p~p~I~WyK--ng~~l-------~~~~r~~~~~----~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 149 LHCYGTDGISSTFKDYTLTWYK--NGNIV-------LYTDRIQLRN----NNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred EEeeCCCCccccCCCceEEEEE--CCEEC-------CCCCCEEEeC----CCCEEEECcCCHHhCEEEEEEEEE
Confidence 578876 346 8999998 32222 2345666553 245799999999999999999943
|
|
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=60.07 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=41.6
Q ss_pred ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 86 GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...+..|..+.+.|... +...+.|.+++..+.... ........|.|.+++.+|+|.|+|.|
T Consensus 5 ~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a 67 (87)
T cd05873 5 QRTFKLGNNAELKCSPKSNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLS 67 (87)
T ss_pred eEEEECCCCEEEEEECCCCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEE
Confidence 45677788899999743 335688888865432110 00011234999999999999999999
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-08 Score=58.35 Aligned_cols=43 Identities=33% Similarity=0.699 Sum_probs=30.1
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
+.|.|+| +...+. .+ +..+. .+.+|.|.++..+|+|.|+|.+.
T Consensus 30 p~i~Wyk--~~~~i~-------~~-~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 30 PPVQWYK--DCKLLE-------GD-RKRFV-----KGSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred CcEEEeE--CCEECC-------CC-ccEEe-----cCCEEEEeeCChhhCEEEEEEEE
Confidence 7999998 333322 11 22222 24579999999999999999994
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=61.06 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=45.8
Q ss_pred CceEEecC---C-CcEEEEEe---cCCeeEEecce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL---G-RPVSWMRK---RDLHILTTNIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~---~~~~~~~~~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|..+.. + ..|.|+|. +...++..... ++...+|+.+..+ .++.+|.|.+++.+|.|+|+|.+..
T Consensus 31 LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~--~gnvsLvI~~l~lSDdGtY~C~fQk 108 (221)
T PHA03376 31 LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS--ANTFFLVVTAANISHDGNYLCRMKL 108 (221)
T ss_pred EEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec--CCeEEEEEEeeeecCCceEEEEEEc
Confidence 56777622 2 78999994 23334432221 2334567777653 4899999999999999999999964
Q ss_pred C
Q psy3125 69 E 69 (163)
Q Consensus 69 ~ 69 (163)
.
T Consensus 109 g 109 (221)
T PHA03376 109 G 109 (221)
T ss_pred C
Confidence 3
|
|
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=58.51 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEeccc-----CcCCCeeEEEEc-CC-CCC
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYA-----QKRDAGIYECQV-NT-EPK 151 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v-----~~~D~G~Y~C~a-~~-~~~ 151 (163)
|....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.++ .+.|+|.|+|.| |. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 334556678888898864 456788999877644321110 001234677666 689999999999 88 776
Q ss_pred c-cEEEEEEE
Q psy3125 152 M-NMAIMLNV 160 (163)
Q Consensus 152 ~-~~~~~L~V 160 (163)
. ++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 6 77888875
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=59.74 Aligned_cols=65 Identities=22% Similarity=0.418 Sum_probs=45.0
Q ss_pred CceEEecCC-CcEEEEEecCC---e---eEEecc--eE-ec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H---ILTTNI--YT-YT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~---~~~~~~--~~-~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.... ..+.|+|+..+ . ++.... .. .. ..+||.+.. ..+.++|.|.+++.+|+|+|.|.+
T Consensus 11 L~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~sDsgtY~Ca~ 88 (104)
T cd05720 11 LKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKENEGYYFCSV 88 (104)
T ss_pred EEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEEEE
Confidence 679987666 88999997543 1 111111 11 11 146788754 347889999999999999999998
Q ss_pred e
Q psy3125 67 N 67 (163)
Q Consensus 67 ~ 67 (163)
.
T Consensus 89 ~ 89 (104)
T cd05720 89 A 89 (104)
T ss_pred c
Confidence 5
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-08 Score=57.74 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=48.2
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEecc--CCCCeEEEEEcccCcCC-CeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~i~~v~~~D-~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+.| ..|.|...+ ..+.. ..++||.+... ......+|.|.++.++| .|.|.|.+ |..+....
T Consensus 21 L~C~~~s~P~P~~i~W~w~~--~~i~~-----~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~ 93 (98)
T cd05898 21 VKCFIGSTPPPDRIAWAWKE--NVLES-----GTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEccCCCCcEEEEEEcc--ccccC-----CCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceE
Confidence 679998777 567888632 22211 12568888753 22457789999998877 79999999 55555555
Q ss_pred EEEE
Q psy3125 75 AIML 78 (163)
Q Consensus 75 ~~~l 78 (163)
.+.|
T Consensus 94 ~i~L 97 (98)
T cd05898 94 IIQL 97 (98)
T ss_pred EEEe
Confidence 5444
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=55.67 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=49.7
Q ss_pred eeCCCeEEEecCC--CCceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPD--LLTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+..|..+.+.|.. .+.+.+.|++++..+... .......+.|.|.++..+|+|.|.|.| |..|..+.++.|+|
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 4456667777753 334567888775433211 011123457999999999999999999 88888888888875
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-08 Score=57.73 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.8
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.|.|.+++.+|+|.|+|.| |..+....++.|.|.
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 3567999999999999999999 878888888888885
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=57.70 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCCceeEEEEeCCCeEEEe-cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+.+.+.|++++..+... .........|.|.+++.+|+|.|+|.| +..........+
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred EcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 3455678888876432211 000012236999999999999999999 665544444333
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=60.55 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=45.0
Q ss_pred CceEEecC------C-CcEEEEEecCC----eeEEecceE----ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGL------G-RPVSWMRKRDL----HILTTNIYT----YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~------~-~~v~W~k~~~~----~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|+|..... . ..+.|+|++.. .+....... ....+||.+..+...++++|.|.+++.+|+|+|.|+
T Consensus 19 L~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~ 98 (119)
T cd05712 19 IPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFR 98 (119)
T ss_pred EEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEEEE
Confidence 57877632 2 45899996533 222111111 112368888655456789999999999999999999
Q ss_pred eeC
Q psy3125 66 VNT 68 (163)
Q Consensus 66 ~~~ 68 (163)
+..
T Consensus 99 ~~~ 101 (119)
T cd05712 99 VEL 101 (119)
T ss_pred EEc
Confidence 843
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=58.28 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+ .| +.|.|+|.+.. + + .+.. ..+.+|.|.+++.+|+|.|.|.+. ..+.....+
T Consensus 21 L~C~~~~~~~~~~i~W~~~~~~-~---------~-~~~~------~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 21 FICRAKSKSPAYTLVWTRVGGG-L---------P-SRAM------DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EEEEcCCCCCCcEEEEEECCCc-C---------C-Cccc------ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 6899975 57 89999984322 1 0 1111 124579999999999999999994 344444433
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-08 Score=53.23 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=37.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.+.|+| +...+ . .+.... .....|.|.+++.+|+|.|+|++.+
T Consensus 7 l~C~~~~~~~~~v~W~~--~~~~~-------~--~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 7 LTCPAEGDPVPNITWLK--DGKPL-------P--ESNRLS----ASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred EEeeCccCCCCeEEEEE--CCEEC-------C--CCCEEe----cCCcEEEEeeCCcccCEEEEEEEec
Confidence 579988888 8999998 22211 1 111111 2355799999999999999999954
|
|
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=57.73 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=38.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.|+.+.. ......+|+|++++.+|+|.|+|.+ +..+.....+.|.|+|
T Consensus 56 ~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 56 GRVFLRR-AHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEecC-CCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 3555533 2244677999999999999999999 7778889999999987
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-07 Score=54.32 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=50.8
Q ss_pred ceEeeCCCeEEEecCC--CCce-eEEEEeCCC--------eEEEecC--CCCceEEEEecccCcC-CCeeEEEEc-CCCC
Q psy3125 86 GARLSAGPLLNFAFPD--LLTT-NIYTYTGDA--------RFSVIHP--QNSDEWNMKIDYAQKR-DAGIYECQV-NTEP 150 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~--------~~~~~~~--~~~~~~~L~i~~v~~~-D~G~Y~C~a-~~~~ 150 (163)
...+..|..+.+.|.. .+.+ .+.|..++. ++.+... .......|+|.+++.+ |+|.|.|.| |..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 3456678888898864 2344 477876653 3333221 1123457999999995 599999999 9999
Q ss_pred CccEEEEE
Q psy3125 151 KMNMAIML 158 (163)
Q Consensus 151 ~~~~~~~L 158 (163)
.....+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 99988877
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=56.00 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=45.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIMLN 159 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L~ 159 (163)
..+.+.|.. .+.+.+.|++++..+.... ........|.|.++. .+|+|.|+|.| |..|.. ++.++|.
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 358888864 5677899998865442111 000112469999885 69999999999 888866 4466654
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=61.05 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=53.6
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEE-ecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---Ce
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILT-TNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KM 72 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~-~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~ 72 (163)
|.|... +.. +.|.|+|.+...... ..+..+.. .+|+.+.. +...+.+|.|.+|+.+|+|.|.|.++..| ..
T Consensus 35 LsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~ 113 (189)
T PHA02987 35 ISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNE 113 (189)
T ss_pred EEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCCCCc
Confidence 578885 444 899999854322211 12222322 24776432 23457889999999999999999997654 44
Q ss_pred eEEEEEEEEcC
Q psy3125 73 NMAIMLNVDDR 83 (163)
Q Consensus 73 ~~~~~l~V~~~ 83 (163)
+..+-|.|..+
T Consensus 114 ~gt~CLtVt~~ 124 (189)
T PHA02987 114 KGVVCLNVTTD 124 (189)
T ss_pred eeEEEEEEEch
Confidence 56666777765
|
|
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-08 Score=59.23 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=41.2
Q ss_pred CceE-EecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeC
Q psy3125 1 MACT-VMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNT 68 (163)
Q Consensus 1 l~C~-~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~ 68 (163)
|.|. ..+.| +.|.|++.. ... +..+.|+.+.. +++|.|.+|+.+|+| .|.|.+.+
T Consensus 23 L~C~pP~g~P~P~i~W~~~~-~~~-------i~~~~Ri~~~~-----~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 23 LPCNPPKSAVPLRIYWMNSD-LLH-------ITQDERVSMGQ-----NGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred EEecCCCCCCCCEEEEECCC-Ccc-------ccccccEEECC-----CceEEEEEEehhhCCCCeEEEEEc
Confidence 6797 68999 999999632 111 12356776553 478999999999999 79999954
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-08 Score=56.87 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=39.9
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~~ 76 (163)
|.|.+.+ .+ ..+.|+|. +..+. . ......|.|.+++.+|+|.|+|.+.+ .+..+..+
T Consensus 19 L~C~~~~~~~~~~~~w~k~--g~~~~---------------~--~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 19 LRCHGWKNKPVYKVTYYRD--GKAKK---------------Y--SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred EEeeCCCCCcceEEEEEEC--CeEcc---------------c--cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 5799864 45 78999983 22111 0 11245699999999999999999943 23345555
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 80 ~i~~ 83 (83)
T cd05753 80 SITV 83 (83)
T ss_pred EEEC
Confidence 5543
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=53.89 Aligned_cols=49 Identities=10% Similarity=0.299 Sum_probs=33.9
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| | .|.|+| ++..+.. ++. .....|.|.++ .|+|.|+|.+.+
T Consensus 18 l~C~a~G~P~P~~I~W~k--~g~~l~~---------~~~------~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 18 LTCQAVGPPEPVEILWWQ--GGSPLGD---------PPA------PSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred EEEEeeeecCCeEEEEEE--CCEECCC---------CCC------CCCCEEEEccc--cCCeEEEEEEEe
Confidence 689999999 8 699998 3332210 111 12346888887 488999999944
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=55.95 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=47.1
Q ss_pred eeCCCeEEEecCC-CCceeEEEEeCCCe--EE--E--ecCCCCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEE
Q psy3125 89 LSAGPLLNFAFPD-LLTTNIYTYTGDAR--FS--V--IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLN 159 (163)
Q Consensus 89 v~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~ 159 (163)
...|..+.+.|.. .+.+.+.|++.... .. . ..........|.|++++++|+|.|+|.| +..+.....+.|.
T Consensus 8 ~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~ 87 (91)
T cd05871 8 GVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLH 87 (91)
T ss_pred EecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEE
Confidence 4567778888853 33467888863221 00 0 0000011234999999999999999999 4556666788888
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|.
T Consensus 88 v~ 89 (91)
T cd05871 88 VI 89 (91)
T ss_pred Ee
Confidence 85
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=56.21 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=26.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|+|.|.|.+
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 89 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL 89 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence 455554433446778999999999999999999
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-07 Score=55.90 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCeEEEecC--CCCceeEEEEeCCCeEEEecC--CCCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEE
Q psy3125 92 GPLLNFAFP--DLLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIML 158 (163)
Q Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L 158 (163)
|..+.+.|. ..+.+.+.|++++..+..... .......|.|.++. .+|+|.|+|.| |..|.. ++.+.|
T Consensus 19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 567888886 346678999987764431110 00122468999875 69999999999 888876 445554
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-08 Score=58.05 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=38.1
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|... +.| +.+.|+|.+....+ ..+.|..+.. .+++|.+.+|+.+|+|.|.|.+.+
T Consensus 23 L~C~pP~g~P~p~~~W~k~~~~~~~-------~~d~r~~~~~----~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 23 LFCDPPPHYPDLSYRWLLNEFPNFI-------PEDGRRFVSQ----TNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred EeeCCCCCCCCCEEEEEECCccccc-------ccCCCeEEeC----CCCcEEEeecCHhhCceeEEEEEe
Confidence 567554 667 99999984221111 1233433332 356799999999999999999954
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=50.26 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=48.5
Q ss_pred eEeeCCCeEEEecCCC--CceeEEEEeC-------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 87 ARLSAGPLLNFAFPDL--LTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
..+..|..+.+.|... ....+.|+.. ..++....... ...|.|++++..|+|.|.|.+ +..+.....+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3445566677777422 3456677776 33444333222 567999999999999999999 6766666667
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=50.26 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=48.5
Q ss_pred eEeeCCCeEEEecCCC--CceeEEEEeC-------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 87 ARLSAGPLLNFAFPDL--LTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
..+..|..+.+.|... ....+.|+.. ..++....... ...|.|++++..|+|.|.|.+ +..+.....+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3445566677777422 3456677776 33444333222 567999999999999999999 6766666667
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=54.56 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=44.9
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCC--CCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIMLN 159 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L~ 159 (163)
..+.+.|.. .+.+.+.|++++..+...... ......|.|.++. ..|+|.|+|.| |..|.. ++.+.|+
T Consensus 20 ~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 20 EKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 468888864 456789999887654322100 0112458998765 69999999999 888866 4566664
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-07 Score=52.33 Aligned_cols=60 Identities=17% Similarity=0.406 Sum_probs=36.5
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ .| +.|.|+| ++..+..+... ...++.+.. ....|.|.....+|.|.|+|++.+
T Consensus 4 L~C~v~g~~P~~~v~W~~--~g~~l~~~~~~~~~~~~~~~~~------~~s~L~i~~~~~~~~~~y~C~a~n 67 (82)
T cd05759 4 LTCRARGAKPAAEIIWFR--DGEVLDGATYSKELLKDGKRET------TVSTLPITPSDHDTGRTFTCRARN 67 (82)
T ss_pred EEEEEeCccCCCEEEEEE--CCEEccCceeeeeEecCCCeEE------EEEEEEEeCceecCCCEEEEEEcC
Confidence 6899997 57 8999998 44443322110 011111100 123578887778888999999954
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-07 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
...|.|..+..+|+|.|.|.+.+
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN 91 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRN 91 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECC
Confidence 34599999999999999999954
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.3e-07 Score=55.08 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEEEE
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIMLN 79 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~ 79 (163)
.+|..+.. +.+|.|++++.+|+|.|.|++.+.. .....+.|.
T Consensus 61 ~gR~~~~~-----ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 61 SGRETIYP-----NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcEEEeC-----CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 35666654 5689999999999999999995433 333444443
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=53.16 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc-EEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN-MAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~-~~~~L 158 (163)
+....+..|..+.+.|.. .+.+ .+.|++++..+.. ........|.|.++ .|+|.|.|.| |..|... +.++|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 445677889999999974 4556 6999998875432 12223456999887 4889999999 8887554 45554
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.5e-07 Score=53.47 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=33.3
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|+.+.. .......+|+|++++.+|+|.|+|.+ +..+..+..+.|.|
T Consensus 52 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 52 RTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred eEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 555432 12234678999999999999999999 56566666667766
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=57.63 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=35.1
Q ss_pred CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.....+|+|++++.+|+|.|+|.+ +..+.....+.|.|+|
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 345778999999999999999999 6667788999999986
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.9e-07 Score=54.54 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=37.8
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+.. .......+|+|.+++.+|+|.|+|.+ ......+..+.|.|+|
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 666543 12345678999999999999999999 5557778888888887
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-07 Score=54.96 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred EeeCCCeEEEecCCC-------------CceeEEEEeCCCeEEEec-------CCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 88 RLSAGPLLNFAFPDL-------------LTTNIYTYTGDARFSVIH-------PQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.+.+|+.+.+.|... ....+.|++++....... +.......|.|.++..+|+|.|+|++
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 344566677777641 123678888753222111 01112335999999999999999999
Q ss_pred CCCCCccEEEEEEE
Q psy3125 147 NTEPKMNMAIMLNV 160 (163)
Q Consensus 147 ~~~~~~~~~~~L~V 160 (163)
|........+.|.|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 77666666776665
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=54.46 Aligned_cols=68 Identities=19% Similarity=0.424 Sum_probs=44.6
Q ss_pred CceEEecCC---CcEEEEEecCCe---eEE-ec---ceE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---ILT-TN---IYT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~~-~~---~~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+..+. ++. .. ... . ...+||.+.........+|.|.+++.+|+|+|.|.+.
T Consensus 17 L~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 96 (117)
T cd04981 17 LSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARG 96 (117)
T ss_pred EEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEE
Confidence 579887543 679999975322 121 11 111 0 1236888875433456789999999999999999985
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 97 ~ 97 (117)
T cd04981 97 L 97 (117)
T ss_pred c
Confidence 3
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=55.24 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=28.1
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V 160 (163)
....+|.|++++.+|+|.|.|.+ .. .......+.|.|
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 44678999999999999999999 33 344455666655
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=52.20 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=46.2
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.++++| +. +.|.+.+. .+... .+..+..... .......|.|..+..+|.|.|+|.+. .....+..+
T Consensus 23 L~V~ieAYP~p~~~~W~~~~~--~l~~~-----~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF 95 (101)
T cd05860 23 LIVEYEAYPKPEHQQWIYMNR--TLTNT-----SDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTF 95 (101)
T ss_pred EEEEEEeCCCCeeeEEEcCCc--ccCcc-----ccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEE
Confidence 578999999 76 99998322 11100 0111111100 01123569999999999999999994 455667777
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 96 ~l~v~ 100 (101)
T cd05860 96 NVYVN 100 (101)
T ss_pred EEEEe
Confidence 77764
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-06 Score=50.06 Aligned_cols=71 Identities=15% Similarity=0.038 Sum_probs=47.1
Q ss_pred EeeCCCeEEEecCCC--C-ceeEEEEeC--------CCeEEEec--CCCCceEEEEecccCcCC-CeeEEEEc-CCCCCc
Q psy3125 88 RLSAGPLLNFAFPDL--L-TTNIYTYTG--------DARFSVIH--PQNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKM 152 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~--~~~~~~~~L~i~~v~~~D-~G~Y~C~a-~~~~~~ 152 (163)
....|..+.+.|... + +..+.|... ..|+.+.. ......+.|.|.++.+.| .|.|.|.| |..|..
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 344566666666431 1 122344322 24555543 234567789999998877 89999999 999999
Q ss_pred cEEEEE
Q psy3125 153 NMAIML 158 (163)
Q Consensus 153 ~~~~~L 158 (163)
+..+.|
T Consensus 92 ~~~i~L 97 (98)
T cd05898 92 TAIIQL 97 (98)
T ss_pred eEEEEe
Confidence 999887
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-07 Score=53.26 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=47.7
Q ss_pred eEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCc--cEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM--NMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~--~~~~~L~V 160 (163)
..+..|..+.++|.... ...+.|+.++..+....+......-|.|.+++.+|+|.|.|.+...|.. -..+.|.|
T Consensus 6 ~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred EEEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 45677888999997543 4588898887754321100011112889999999999999999433433 34445544
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-07 Score=54.24 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=35.0
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEEEEe
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIMLNVD 161 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L~V~ 161 (163)
|..+.........+|+|++++.+|+|.|.|.+ + ..|..+..+.|.|.
T Consensus 52 Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 52 RVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred cEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 44444433345677999999999999999998 3 45667778888774
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-07 Score=54.04 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=45.2
Q ss_pred eCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-CCCC----CccE
Q psy3125 90 SAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEP----KMNM 154 (163)
Q Consensus 90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~----~~~~ 154 (163)
..+....+.|+. ...+.+.|++++..+...... ......|.|.++..+|+|.|+|+| +..+ +..+
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr 87 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITR 87 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEE
Confidence 344555666653 234578899887543211100 012345999999999999999999 6543 4456
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
.+.|.|.
T Consensus 88 ~~~l~v~ 94 (95)
T cd05897 88 IIKLRIV 94 (95)
T ss_pred EEEEEEc
Confidence 6667664
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=53.07 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=27.0
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
....+|+|.+++.+|+|.|.|.+ +... .....+.|.|
T Consensus 77 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 77 RKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred CCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 34578999999999999999999 4422 1234566654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=49.90 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=36.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...+. | +.|.|+| ++..+. +... ...+.+|.. ..+|.+.-...+|.+.|.|++.+
T Consensus 4 L~C~s~~skP~a~i~W~k--~~~~l~-~~~~~~~~~~~~t~-------~s~L~~~~~~~Ddg~~~~C~A~n 64 (80)
T cd05885 4 LTCLSPRSKPAATLRWYR--DRKELK-GVISQQENGKTVSV-------SNTIRFPVDRKDDGAILSCEASH 64 (80)
T ss_pred EEEeCCCccCCCeEEEEE--CCEECC-CCcccccCCceEEE-------EEEEEEEeeeccCCcEEEEEEEC
Confidence 57888854 5 9999998 443332 1110 011122221 34689988899999999999954
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=52.37 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=30.6
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
+.|.|+| +...+.. ...++.... +...|.|.+|..+|+|.|+|++.
T Consensus 30 ~~v~WYK--d~~~l~~------~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~~~ 75 (95)
T cd05897 30 VELQWYK--DSVLLDK------DNEKFYSLK----GSTYLHIIDVSLNDSGYYTCKLQ 75 (95)
T ss_pred CcEEEcc--CCEECcC------CCcceEecC----CCCEEEEEEcChhhCEEEEEEEE
Confidence 7999998 3333321 112333211 23359999999999999999994
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=49.7
Q ss_pred eEeeCCCeEEEecCCCCc-eeEEEEeCCCeEEEe-cCCCCceEEEEecccCcCCCeeEEEEc-CCC---CCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT-TNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQV-NTE---PKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~---~~~~~~~~L~V 160 (163)
..+..|..+.+.|..... ....|++++...... .........|.|.+|+.+|+|.|+|.+ +.. ...+..+.|.|
T Consensus 11 ~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 11 SVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred CccCCCCcEEEEEecCCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 467789999999986543 344555554422211 122345667999999999999999999 542 24556677766
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-07 Score=48.93 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
|..+.+.|.. .+...+.|++++..+............|.|.+++.+|+|.|+|.+ +.
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 4456666652 334567888766544310011123456999999999999999999 54
|
|
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=53.09 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=27.6
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
....+|.|++++.+|+|.|+|.+ +... .....+.|+|
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 76 RRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred CCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 34567999999999999999999 4433 2345666664
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=48.98 Aligned_cols=59 Identities=19% Similarity=0.460 Sum_probs=39.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~ 77 (163)
|.|.+.+.| ..+.|++ +...+. . ..+. |.|.++..+|.|.|+|.+.+.. ..+..+.
T Consensus 19 l~C~~~~~p~~~~~w~~--~~~~~~---------------~--~~~~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 19 LTCSVSGNPPPQVQWYK--NGSPIN---------------S--SQNG--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp EEEEEESSSSSEEEEEE--TTEEEE---------------E--ESSE--EEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcccceeeeeee--eeeeee---------------e--eeee--eeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 579999988 9999998 322221 0 0111 7778899999999999995432 3344444
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 543
|
... |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=54.02 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=37.8
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+.. .......+|+|++++.+|+|.|.|.+ .........+.|.|.|
T Consensus 59 R~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 59 RVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred eEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 665543 23345677999999999999999999 5556788899999976
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-06 Score=51.19 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=44.3
Q ss_pred eEeeCCCeEEEecCCCCc--eeEEEEeCCC---eEEEe---cC---------CC-----CceEEEEecccCcCCCeeEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT--TNIYTYTGDA---RFSVI---HP---------QN-----SDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~---~~---------~~-----~~~~~L~i~~v~~~D~G~Y~C 144 (163)
..+..|..+.+.|...+. ..+.|++... +..+. .. .. ....+|.|++++.+|+|.|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 345567777887765443 3778887521 11110 00 00 113469999999999999999
Q ss_pred Ec-CCC-CCccEEEEEEE
Q psy3125 145 QV-NTE-PKMNMAIMLNV 160 (163)
Q Consensus 145 ~a-~~~-~~~~~~~~L~V 160 (163)
.+ +.. ......+.|.|
T Consensus 88 ~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 88 QTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEeCCccEEEEEEEEEC
Confidence 99 544 34444555543
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=46.73 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCeEEEecCC---CCceeEEEEeCCCeEEEe-----cCCCCce-EEEEecccCcCCCeeEEEEc
Q psy3125 92 GPLLNFAFPD---LLTTNIYTYTGDARFSVI-----HPQNSDE-WNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~L~i~~v~~~D~G~Y~C~a 146 (163)
|..+.+.|.. .......|++++...... ....... ..|.|.+++++|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 3456666754 344688888886632111 1111111 23999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=53.85 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred eEEEecC-CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+... ......+|+|++++.+|+|.|.|.+ .........+.|.|.|
T Consensus 59 Rvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 59 RVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred EEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 5555432 2235678999999999999999999 5556677888999876
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+|.|++++.+|+|.|+|.| +..
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~ 88 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKK 88 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCcc
Confidence 4567999999999999999999 543
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=52.17 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=34.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEEEE
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIMLNV 160 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L~V 160 (163)
+|+.+.. ......+|.|++++.+|.|.|.|.+ + ..|+.+..+.|.|
T Consensus 51 ~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKN-PSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcC-CCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 3444432 2235667999999999999999999 4 3567778888877
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.5e-06 Score=49.32 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=27.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
.|+.+..........|+|.+++.+|+|.|.|.+...+
T Consensus 51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4555543344567789999999999999999994333
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=50.13 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecC----CCCceEEEEecccCc----CCCeeEEEEc-CCCCCcc-EEEEE
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQK----RDAGIYECQV-NTEPKMN-MAIML 158 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~----~D~G~Y~C~a-~~~~~~~-~~~~L 158 (163)
+.|. ..+.+.+.|++++..+..... .......|.|..+.. +|+|.|+|.| |..|... +.+.|
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4454 345567888876553321110 012245688888754 7999999999 8877543 34444
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=49.55 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=38.7
Q ss_pred EEecC--CCCceeEEEEeCCCeEEEecCC----CCceEEEEecccCc----CCCeeEEEEc-CCCCCccE-EEEE
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARFSVIHPQ----NSDEWNMKIDYAQK----RDAGIYECQV-NTEPKMNM-AIML 158 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~----~D~G~Y~C~a-~~~~~~~~-~~~L 158 (163)
.+.|. ..+.+.+.|++++..+...... ....+.|.|..+.. .|+|.|+|.| |..|.... .++|
T Consensus 2 ~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 2 VIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 34554 4566788898876644221110 11234688877764 4889999999 88776543 5554
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=49.36 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=31.5
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
|+.+.........+|.|++++.+|.|.|+|.+ |... .....+.|.|
T Consensus 68 Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 68 RIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred ceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 55554444455678999999999999999999 4433 2334555543
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-06 Score=49.50 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEE
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNV 160 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V 160 (163)
.....+|+|++++.+|+|.|+|.+ ...|..+..+.|+|
T Consensus 57 ~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 57 GLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 345677999999999999999998 44567777888877
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=51.16 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=33.7
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEcCC--CCCccEEEEEEE
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~--~~~~~~~~~L~V 160 (163)
|+.+.. ......+|.|++++.+|+|.|.|.+.+ .|+.+.++.|+|
T Consensus 49 Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 49 RVSFKN-YSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred cEEEcC-CCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 444432 334467899999999999999999944 567777777776
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-06 Score=48.96 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=26.0
Q ss_pred EEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V 160 (163)
.+|.|++++.+|+|.|+|.+ .. .......+.|.|
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 56999999999999999999 33 244555555554
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=51.79 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=44.2
Q ss_pred ceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 86 GARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+..|..+.+.|.. .+...+.|+.++....+... .....+.|.|++|+++|+|.|+|.| |..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence 3557778889999953 35578889887542211110 1123456999999999999999999 553
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=48.84 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=36.2
Q ss_pred EEecC--CCCceeEEEEeCCCeEEEecC----CCCceEEEEecccC----cCCCeeEEEEc-CCCCCcc
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQ----KRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~----~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+.|. ..+.+.+.|++++..+..... .......|.|..+. .+|+|.|+|.| |..|...
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred EEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 34554 456778889887653321110 01224569998764 24799999999 8887553
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=48.59 Aligned_cols=36 Identities=17% Similarity=0.485 Sum_probs=28.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V 160 (163)
..++|+|++++.+|+|.|.|.+ ...+ .....+.|.|
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3577999999999999999999 4444 3356667766
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-06 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.4
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...+|.|++++++|+|.|+|.+
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~ 91 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCAS 91 (110)
T ss_pred CccEEEECCCChhhCEEEEEEe
Confidence 4678999999999999999999
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=50.17 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=29.8
Q ss_pred ceEEEEecccCcCCCeeEEEEcC--CCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVN--TEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~--~~~~~~~~~~L~V 160 (163)
...+|+|++++.+|+|.|.|.+. ..|.....+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 56789999999999999999983 4567777777776
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.1e-06 Score=51.71 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=25.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+........+.|+|.+++.+|+|.|.|.+
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~ 91 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCAL 91 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEE
Confidence 455554333345678999999999999999999
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.9e-06 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.6
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|+|++++.+|+|.|.|.+
T Consensus 68 ~~~~~L~I~~~~~~Dsg~Y~Ca~ 90 (106)
T cd04980 68 GTDFTLTISRVEPEDAAVYYCQQ 90 (106)
T ss_pred CCEEEEEECCCChHHCEEEEEEE
Confidence 34677999999999999999998
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-06 Score=50.05 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=31.4
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V~ 161 (163)
...+|.|++++.+|+|.|+|.+.+.+.-+.+..+.|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 4677999999999999999999887777777777664
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.8e-06 Score=46.68 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=48.1
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V 160 (163)
..+..|..+.+.|.. .+.....|+.++..+.-.. . . |.|..+..+|+|.|+|.| +.. +..+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~--~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--N--G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--S--E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--e--e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 457778889999853 3346788988765444221 1 1 888999999999999999 533 46667777765
|
... |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.9e-06 Score=52.19 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|+|.|.|.+
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 96 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAY 96 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEE
Confidence 455554433235788999999999999999998
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-06 Score=51.24 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=34.5
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
....+|.|.+++.+|+|.|.|.+ .........+.|.|.|
T Consensus 76 ~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 76 QGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 34678999999999999999999 6777888999999986
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.3e-06 Score=49.86 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=26.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|+.+.........+|+|++++.+|+|.|.|.+ +..
T Consensus 54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 90 (105)
T cd00099 54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG 90 (105)
T ss_pred CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 355544433335778999999999999999999 443
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-06 Score=50.65 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=47.7
Q ss_pred CceEEecCC----CcEEEEEecCCe--eEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH--ILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~--~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.+.. ..+.|+|..++. ++.. ++......+|+.+..+...+..+|.|.+++.+|++.|.|..
T Consensus 18 LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 18 LVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 679998766 578999975442 1211 22111235688777766678999999999999999999986
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.1e-06 Score=49.37 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=39.9
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCc-CCCeeEEEEc-CCCCCcc
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQK-RDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a-~~~~~~~ 153 (163)
..+.+.|.. .+.+.+.|++++..+..... .......|.|.++.. +|+|.|+|.| |..|...
T Consensus 20 ~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 20 GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 457777763 45678899887654421110 001124689988874 9999999999 8877553
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=48.35 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=44.4
Q ss_pred CceEeeCCCeEEEecC---CCCceeEEEEeCCCeEEEec-CC-CCceEEEEecccCcCCCe-eEEEEc-CCC
Q psy3125 85 RGARLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVIH-PQ-NSDEWNMKIDYAQKRDAG-IYECQV-NTE 149 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~L~i~~v~~~D~G-~Y~C~a-~~~ 149 (163)
..+.+..|..+.+.|. ..+.+.+.|......+.... +. .+..+.|.|++|..+|+| .|.|.| +..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 3456788999999995 24567888886644321110 00 012356999999999999 799999 554
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=48.95 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=34.7
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.+.|+....... . ..+.. .....+|.|.++..+|.|.|+|.+.
T Consensus 20 l~C~~~~~~~~~~~~W~~~~~~~~---~------~~~~~-----~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 20 LTCSAEGGPPPPSISWYDSNPSFN---S------NSRGS-----SSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp EEEEESSEESSEEEEEETEEEEEE---E------EEEEE-----EEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred EEEEEccccCCeEEEEEecCCcee---e------eeeec-----cceeeEEEEccCCHHhCcEEEEEEE
Confidence 579999886 8899981000000 0 00111 1135679999999999999999984
|
... |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=49.50 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=25.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.++.+..........|+|++++.+|+|.|.|..
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~ 91 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMT 91 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeE
Confidence 456554334455678999999999999999998
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=47.65 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=48.8
Q ss_pred ceEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEE----ecCCCCceEEEEecccCcCCCeeEEEEc--CCCC----CccE
Q psy3125 86 GARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSV----IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEP----KMNM 154 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~----~~~~ 154 (163)
...+..|..+.+.|.... .....|++.+..... ..........+.|.+++.+|+|.|+|.. ...+ ..+.
T Consensus 9 ~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sd 88 (94)
T cd05711 9 SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSD 88 (94)
T ss_pred CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCC
Confidence 456788999999996433 235667776653221 1111334667999999999999999997 2222 4455
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 89 pl~l~V 94 (94)
T cd05711 89 PLKIVV 94 (94)
T ss_pred CeEEeC
Confidence 555543
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=46.54 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=33.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.|.|.+++.+|+|.|+|.| |.....+..+.|.|.
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 3567999999999999999999 888898888888875
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=44.05 Aligned_cols=62 Identities=18% Similarity=0.396 Sum_probs=38.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ ..+.|++.+..... .... +.............|.|.+++.+|.|.|.|.+...
T Consensus 3 l~C~~~~~~~~~~~W~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 3 LTCLASGPPPPTITWLKNGKPLPS--SVLT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred EEEEecCCCCCcEEEEECCEECCC--cccE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 579999966 99999983221110 1000 00011111234677999999999999999999543
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=47.54 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=24.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+.. ......|+|++++.+|+|.|.|.+
T Consensus 52 ~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 52 DRFSGSK--SGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred CCEEEEc--cCCEEEEEECCCChhhCEEEEEEE
Confidence 3555443 235678999999999999999998
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.6e-05 Score=49.94 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=31.1
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCC--C-CccEEEEEEEec
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTE--P-KMNMAIMLNVDG 162 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~--~-~~~~~~~L~V~~ 162 (163)
....|+|++++++|+|.|.|.++.. | +.+..+-|+|.+
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 4567999999999999999999554 4 667778888865
|
|
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-05 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.....|.|.+|+.+|+|.|+|+..+
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEEC
Confidence 3467799999999999999999954
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.98 E-value=8e-05 Score=46.57 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=24.6
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+.........+|+|.+++.+|+|.|.|.+
T Consensus 68 R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~ 99 (119)
T cd05712 68 RFRLLGDLGKKNCSLLISDAQPEDSGKYFFRV 99 (119)
T ss_pred cEEEecCCCCCEEEEEEccCChhhCeEEEEEE
Confidence 44443333445678999999999999999988
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=44.93 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=43.4
Q ss_pred EEEecC---CCCceeEEEEeCCCeEEEecC--CC----CceEEEEecccCcCCCeeEEEEc-CCCC---CccEEEEEEE
Q psy3125 95 LNFAFP---DLLTTNIYTYTGDARFSVIHP--QN----SDEWNMKIDYAQKRDAGIYECQV-NTEP---KMNMAIMLNV 160 (163)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~---~~~~~~~L~V 160 (163)
+.+.|. ..+...+.||.++..+..... .. ...+.|+|...+.+|++.|+|+| |..+ ....+..|+|
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 456675 345678899988775532110 11 22346999999999999999999 6644 3445556654
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=46.34 Aligned_cols=60 Identities=22% Similarity=0.463 Sum_probs=36.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | +.|.|+| ++..+..+. .....++.|.+. ..|.|......|.|.|+|++.+.
T Consensus 18 L~C~a~g~~P~~~~i~W~~--~g~~~~~~~~~~~~~~~~~gt~~~~-------s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 18 LTCLATGFYPPDITVTWLK--NGKELTSGVTTTPPVPNSDGTYSVS-------SQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred EEEEEeeEECCCcEEEEEE--CCEECCCceeccccccCCCCCEEEE-------EEEEECHHHhCCCCCEEEEEEeC
Confidence 57999998 5 6899998 333332111 111223333332 24677776777999999999653
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=42.00 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=49.4
Q ss_pred eEeeCCCeEEEecCCCC----ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPDLL----TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+..|..+.+.|...+ ...+.|..++....-. ......+|.+..+...|+|.++|.+ .........+.+.|.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 45677888999987533 3377888776643211 2234556999999999999999999 443344445555554
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=45.99 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=27.2
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+........++|+|++++.+|+|.|.|.+
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 4567666544466888999999999999999974
|
|
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=42.67 Aligned_cols=59 Identities=19% Similarity=0.368 Sum_probs=33.5
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE--ecCC-CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT--YTGD-ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~--~~~~-~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+..+... ...+ +.|++. ..|.+.-....|...|.|++.+
T Consensus 4 LtC~a~g~~P~~~ItW~k--~g~~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h 67 (83)
T cd07705 4 LRCTSSGSKPAANIKWRK--GDQELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGH 67 (83)
T ss_pred EEEEecCccCCCEeEEEE--CCEECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEEC
Confidence 57999986 7 9999998 43333211100 0111 122222 2355545556666799999965
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=58.69 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=84.7
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~ 76 (163)
|+|.+.+.| ..++|++.+.+.. +|+.... +-+|...+..+.--+.|.|++.+. ......+
T Consensus 27 l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~ 90 (741)
T KOG3515|consen 27 LPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIA-----DPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPM 90 (741)
T ss_pred eeeecCCCCCCcceEEEecCcccc-----------ccccccc-----CCceeeecchhhhhhhhhhhhcccccCceecce
Confidence 689999888 8999998433322 3444333 334777777888889999999543 2234455
Q ss_pred EEEEEcCCC------ceEeeCCCeEEEec-C---CCCceeEEEEeCCCeEEE-e--------cCCC---CceEEEEeccc
Q psy3125 77 MLNVDDRGR------GARLSAGPLLNFAF-P---DLLTTNIYTYTGDARFSV-I--------HPQN---SDEWNMKIDYA 134 (163)
Q Consensus 77 ~l~V~~~~~------~~~v~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~--------~~~~---~~~~~L~i~~v 134 (163)
.+.|..++. +.....+..+...| . ..+.....|..++.-... . .-.. .....|.+...
T Consensus 91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~ 170 (741)
T KOG3515|consen 91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS 170 (741)
T ss_pred eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence 566665531 12233455666666 2 233456667655432111 1 0011 12445888899
Q ss_pred CcCCCeeEEEEc-CC---CCCccEEEEEEE
Q psy3125 135 QKRDAGIYECQV-NT---EPKMNMAIMLNV 160 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~---~~~~~~~~~L~V 160 (163)
+..|.|.|+|.| +. ....-....+.|
T Consensus 171 Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v 200 (741)
T KOG3515|consen 171 RKADNGNYTCPANNRNSPGLSFAKQLTIIV 200 (741)
T ss_pred EecCCceeEcccccccCccccccceeEeec
Confidence 999999999999 42 233334444444
|
|
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=41.07 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=37.8
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecce-EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~ 75 (163)
|.|.+.|. | +.|.|+| ++..+..... .....+++.. ..+|.+.--...|...|.|++.+ .......
T Consensus 4 L~C~s~gSkP~A~I~W~k--~~~~l~~~~~~~~~~~~~~t~-------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~ 74 (82)
T cd05883 4 LNCTAMASKPAATIRWFK--GNKELTGKSTVEETWSRMFTV-------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ 74 (82)
T ss_pred EEEEecCCCCCCEEEEEE--CCEECcCcccceeccCCCcEE-------EEEEEEECchhhCCCEEEEEEcCcccCCceee
Confidence 57999876 4 9999998 3333321111 0011122222 23466644444454589999954 2224455
Q ss_pred EEEEEE
Q psy3125 76 IMLNVD 81 (163)
Q Consensus 76 ~~l~V~ 81 (163)
..|.|.
T Consensus 75 ~~L~V~ 80 (82)
T cd05883 75 RYLEVQ 80 (82)
T ss_pred EEEEEE
Confidence 556654
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=41.68 Aligned_cols=58 Identities=17% Similarity=0.400 Sum_probs=32.3
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE--e-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT--Y-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~--~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+. +... . ..++.|.+. ..|.+.-....|.+.|.|++.+
T Consensus 4 L~C~~~~~~P~~~v~W~~--~~~~l~-~~~~~~~~~~~~~~~~~-------s~l~~~~~~~d~g~~~~C~v~h 66 (82)
T cd05761 4 LTCTSSGSKPAATIRWFK--GDKELK-GVKLKEEDENGKTFTVT-------SSLRFQVDREDDGAPIICRVDH 66 (82)
T ss_pred EEEEecCcCcCCeEEEEE--CCEEcc-CceeeEecCCCCEEEEE-------EEEEEEcchhhCCCEEEEEEeC
Confidence 57999876 7 9999998 333332 1110 0 011223322 1355544445556799999954
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.1e-05 Score=42.75 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=33.0
Q ss_pred EEEecCCC--C-ceeEEEEeCCC-eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 95 LNFAFPDL--L-TTNIYTYTGDA-RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 95 ~~~~~~~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
+.+.|... . ...+.|+.... ..............|.|+++..+|.|.|+|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence 77888632 2 45677771111 11111122234667999999999999999998
|
... |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00023 Score=41.59 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEEEE
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~V~ 81 (163)
.+..+|.+..+...|+|+.+|.+. ........+.+.|.
T Consensus 48 ~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 48 QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 457889999999999999999994 33233455555554
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=39.40 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=27.9
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCC-CeeEEEEEEEEcC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEP-KMNMAIMLNVDDR 83 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~ 83 (163)
+...|+|.++..+|+|.|.|.+.+.. .....+.|+|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 34569999999999999999996432 2334555666544
|
|
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=42.35 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=33.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|........+.|+|.+....... . + ..........+.|.+++.+|+|.|.|..
T Consensus 20 L~C~~~~~~~~f~l~k~g~~~~~~~-----~-~-----~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 20 LQCHSDIRFDRFILYKEGRSKPVLH-----L-Y-----EKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred EEEecCCCCCEEEEEECCCCCCcee-----c-c-----cccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 5676665227788998443211100 0 0 0000122456999999999999999997
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=44.46 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=19.8
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|+|.+++.+|+|.|.|.+
T Consensus 74 ~~~~L~I~~~~~~Dsa~YyCa~ 95 (117)
T cd04981 74 STVYLQLNSLTPEDTAVYYCAR 95 (117)
T ss_pred CEEEEEECCCCHHHCEEEEEEE
Confidence 3457999999999999999988
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00057 Score=39.60 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=26.6
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~V 160 (163)
+.|.|.....+|.|.|+|.| +.. .....+++|+|
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 46889888889999999999 554 45567777765
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00054 Score=37.10 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
...|-|-++..+|+|.|.|.+ |..-....++.|.|-
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 334888899999999999999 665566666766664
|
|
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=38.21 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=32.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+...... ...++.|+.. .+|.+..-...|...|+|++.+
T Consensus 4 LtC~a~gf~P~~~itW~k--ng~~l~~~~~~~~~~~~~~t~~~~-------s~L~~~~~~~d~g~~ytC~v~h 67 (83)
T cd05884 4 LTCKTSGSKPAADIRWFK--NDKEIKDVKYLKEEDANRKTFTVS-------STLDFRVDRSDDGVAIICRVDH 67 (83)
T ss_pred EEEEeCCccCCCEEEEEE--CCEECcCceeeEeeCCCCCEEEEE-------EEEEEEcccccCCCEEEEEEec
Confidence 57999974 5 8999998 43333211110 1122333332 2366654445556689999954
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0026 Score=36.25 Aligned_cols=59 Identities=20% Similarity=0.462 Sum_probs=35.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+| ++..+..+.. ....++.|++.. .|.|......+...|+|.+..
T Consensus 4 L~C~a~gf~P~~i~v~W~k--~g~~~~~~~~~~~~~~~~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H 69 (75)
T smart00407 4 LVCLVSGFYPPDITVTWLR--NGQEVTSGVSTTDPLKNSDGTYFLSS-------YLTVSASTWESGDTYTCQVTH 69 (75)
T ss_pred EEEEEEeEeCCCCEEEEEE--CCEECCCCEEECceEECCCCCEEEEE-------EEEEccccCCCCCEEEEEEEE
Confidence 57999987 4 6899998 3332211111 112344454432 366655566677899999954
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00037 Score=42.48 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.2
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+... .....|+|++++.+|+|.|.|.+
T Consensus 57 ~~rf~~~~~--~~~~~L~I~~~~~sDsgtY~Ca~ 88 (104)
T cd05720 57 SKRFSGSRS--SNSFVLTLKNFQKENEGYYFCSV 88 (104)
T ss_pred CceEEEEec--CCEEEEEECCCCHHHCEEEEEEE
Confidence 356665432 35778999999999999999988
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0034 Score=36.47 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEecC---CCCceeEEEEeCCCeEEEec-------CCCCceEEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEEec
Q psy3125 95 LNFAFP---DLLTTNIYTYTGDARFSVIH-------PQNSDEWNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNVDG 162 (163)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V~~ 162 (163)
+.+.|. ..+...+.|+.++..+.-.. ......+.|.|..-..+|...|+|+| +. ......+..|+|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 345564 34567889998876543211 11223567999888888888899999 43 34577888888865
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0041 Score=39.84 Aligned_cols=61 Identities=18% Similarity=0.399 Sum_probs=34.5
Q ss_pred CceEEecC-C--CcEEEEEecCCe-e---EEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLH-I---LTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~-~---~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+|.+... . ...+ ......++.|++.. .|.|..-...+.+.|.|.+.+
T Consensus 58 L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s-------~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 58 LICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS-------HLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred EEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE-------EEEecCCccCCCCEEEEEEEc
Confidence 57999995 4 489999843221 1 1001 11122344454432 466665555556799999964
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0034 Score=37.50 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=34.2
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+..+ ......++.|++.. .|.|..-...+...|.|++...
T Consensus 19 L~C~a~gFyP~~I~vtW~~--dg~~~~~~~~~s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 19 LLCLISGYTPGTIEVEWLV--DGQVATLVAASTAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred EEEEEEeEECCCCEEEEEE--CCEECcCceeecccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEEEEC
Confidence 57999984 5 7889998 43333111 11122334444332 3556544445667999999653
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00068 Score=42.72 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=40.3
Q ss_pred CceEEecCC------CcEEEEEecCCeeEEecceE----ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLHILTTNIYT----YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~ 69 (163)
|+|.+...+ ..|.|..+ +..++.+++.. ....++..+ .+-..++.+|.+...+.- .|.|+|.+. ..
T Consensus 32 IPC~v~n~~~~ni~~m~VkWk~~-~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~ 108 (130)
T PF08204_consen 32 IPCFVNNLEANNISEMYVKWKFK-NKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTELS 108 (130)
T ss_dssp E--BBSS---SSGGGEEEEEEET-TEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEETT
T ss_pred EEeEeccccccccceEEEEEEEC-CeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEecC
Confidence 578887643 45889863 44444433321 112334444 322356888999886555 799999994 33
Q ss_pred CCeeEEEEEEE
Q psy3125 70 PKMNMAIMLNV 80 (163)
Q Consensus 70 ~~~~~~~~l~V 80 (163)
......+.|+.
T Consensus 109 ~ege~~i~Lk~ 119 (130)
T PF08204_consen 109 REGETTIELKY 119 (130)
T ss_dssp EEEEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 34555666654
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=39.80 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=20.7
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
++.+|.|.+++.+|.|.|+|.+
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~f 106 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRM 106 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEE
Confidence 5778999999999999999999
|
|
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0052 Score=36.81 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=31.9
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
+.|... +.| +.|.|++...+..- .......++++.+.. .|.+.--...|...|.|++.+
T Consensus 20 a~C~s~~gkPaa~IsW~~~~~g~~~--~~~~~~~~gt~tv~S-------~l~~~P~~~d~Gk~ltC~v~h 80 (95)
T cd07703 20 AKCVSANGRPPARISWSSTLGGNAN--TTSKENGDGTVTVTS-------EYSLVPTPEANGKEVTCKVEH 80 (95)
T ss_pred EEEEcCCCCCCcEEEEEcCCCCCee--EEEEeCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeC
Confidence 368776 667 99999983111110 111112233444332 355544445555589999965
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0074 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.8
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.....|.|.+++..|+|.|.|.+ +..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 34667999999999999999999 443
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=36.49 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred CceEEecC--C--CcEEEEEecCCeeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G--RPVSWMRKRDLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~--~~v~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+|.+ +........ ....++.|++.. .|.+..-...+.-.|.|.+..
T Consensus 19 LtC~v~gf~yP~~i~v~W~r~~-~~~~~~~~~~~~~~~dgty~~~s-------~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 19 LTCLVTNLTSPEGVNVTWTRGS-GEPVKASIQPPESHNNATLSVTS-------TLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred EEEEEeCCCCCCCcEEEEEECC-eEeeeEEecccccCCCCCEEEEE-------EEEeCHHHccCCCcEEEEEEC
Confidence 57999998 6 788999832 232221111 112233444332 244443333334489999965
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0055 Score=37.03 Aligned_cols=59 Identities=15% Similarity=0.380 Sum_probs=34.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+| ++..+..+ ......++.|++.. .|.+..-...+...|.|++..
T Consensus 22 L~C~~~gfyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 22 LVCLINDFYPGFATVQWKV--DGATVSSGVQTSTTEQQSDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred EEEEEEeEECCCCEEEEEE--CCEECcccEeccccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEe
Confidence 57999985 4 7889998 33333211 11122245555432 355655554556799999964
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0031 Score=35.00 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred eEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEEEc
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDD 82 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~ 82 (163)
+.+|.+..+...-.|.|.|++.. ......|+|..
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVyY 65 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE---PNKEKTLQVYY 65 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc---CCCcEEEEEEE
Confidence 45688888999999999999843 22344566543
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0088 Score=35.56 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=13.3
Q ss_pred CceEEecC-C--CcEEEEE
Q psy3125 1 MACTVMGL-G--RPVSWMR 16 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k 16 (163)
|.|.+.|. | ..|.|+|
T Consensus 19 L~C~a~gF~P~~i~v~W~~ 37 (93)
T cd07698 19 LSCHATGFYPRDIEVTWLR 37 (93)
T ss_pred EEEEEEEEeCCCcEEEEEE
Confidence 57999995 5 5889998
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=35.31 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=29.7
Q ss_pred ceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 2 ACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 2 ~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.|... +.| +.|.|++.-.+... .......++.+.+.. .|.+.-....|.-.|+|++.+
T Consensus 21 ~C~s~~gkP~a~ItW~~~~~~~~~--~~~~~~~~g~~tv~S-------~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 21 TCVSANGKPPATISWETTLGGEAE--TQSKENPNGTVTVTS-------EYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred EEECCCCcCCCEEEEEeCCCCcce--eEeecCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeC
Confidence 58884 778 99999983111110 000111222333322 355544444444589999954
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=34.68 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=33.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+.. .......|+.|++.. .|.+. .++...|.|++...
T Consensus 20 L~C~a~gFyP~~I~v~W~~--~g~~~~~~~~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 20 LICFVDNFFPPVLNVTWLK--NGVPVTDGVSETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred EEEEEEEEECCcCEEEEEE--CCeEccCceEEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEEEEeC
Confidence 57999984 5 7889998 3333221 112223455555442 25443 34556999999653
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.032 Score=30.78 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 91 AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|..+.+.|+..... +.|..++.... . ....+.+.+-. +++|.|.|.+
T Consensus 6 sGTtVtlTCP~~~~~-i~W~~n~~~~~--g----~~~~~~~~~~~-e~~G~Y~C~~ 53 (65)
T cd07692 6 SGTTVTVTCPLSGDD-IKWKKNDQVSQ--G----SDEKYLSLNHF-SSSGYYHCTA 53 (65)
T ss_pred eccEEEEECCCCCCC-ceEEeCCccCC--C----CCceEEeeccC-CCCceEEEEe
Confidence 367788899865333 88888873211 1 12234444555 8999999999
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0042 Score=42.15 Aligned_cols=66 Identities=8% Similarity=0.314 Sum_probs=41.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEE--ecce-----EecCCC---eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILT--TNIY-----TYTGDA---RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~--~~~~-----~~~~~~---r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...... ..+.|++.++..+-. .+.. .+.+.+ .+.+.. +.+..+|.|+++..+..|.|+|++..
T Consensus 44 L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv--~g~~STLTIkk~~i~N~GCYtc~~ks 121 (251)
T PHA02982 44 LQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV--SGNSSTFTMKKPDPQNLGCFTCEAKD 121 (251)
T ss_pred EEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE--eccceeEEeccCCcccCCceEEEEec
Confidence 467766655 788898744322221 1111 111222 233333 35688999999999999999999965
|
|
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0097 Score=35.98 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=30.7
Q ss_pred CceEEecC-C-Cc--EEEEEecCCeeEEecceEecCCCeEEEe-ccCCCCeEEEEEcccCcCCCe-eEEEEee
Q psy3125 1 MACTVMGL-G-RP--VSWMRKRDLHILTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAG-IYECQVN 67 (163)
Q Consensus 1 l~C~~~~~-~-~~--v~W~k~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~ 67 (163)
|.|.+.+. | +. |.|+| +...+.... +... ........+|.+. +.++|.| .|.|++.
T Consensus 21 L~C~v~g~~P~a~L~i~W~r--G~~~l~~~~--------~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~ 82 (100)
T cd05755 21 LQCDVPGVAPRQNLTVVLLR--GNETLSRQP--------FGDNTKSPVNAPATITIT-VDREDHGANFSCETE 82 (100)
T ss_pred EEEEEcCcCCCCcEEEEEee--CCEEcccce--------eccccCCCceeEEEEEEe-cchhhCCcEEEEEEE
Confidence 57999975 4 54 79998 443332111 1100 0001124456654 5566666 8999994
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=43.71 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=32.6
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|...|.-. ++.+ +...++..+.. ++.|.+.+.+++++|.|+|.+.
T Consensus 13 P~y~W~GP-~g~~-------l~gn~~~nIT~-----TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 13 PTYLWTGP-NGKP-------LSGNSYVNITE-----TGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CceEEECC-CCcc-------cCCCCeEEEcc-----CceEEeeccccccCCceEEEEE
Confidence 78889852 2222 23445666664 5669999999999999999883
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.026 Score=34.91 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+....+.....|+|.+++.+|++.|.|..
T Consensus 60 ~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 60 LDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred CCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 4566677666777889999999999999999976
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=33.59 Aligned_cols=57 Identities=19% Similarity=0.424 Sum_probs=31.7
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+.. .......++.|++.. .|.+ ...+...|.|++...
T Consensus 19 L~C~~~gFyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 19 LVCHVWGFYPPEITVKWFK--NGQEETEGVVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred EEEEEeeecCCCCEEEEEE--CCeecCCCceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEEEEeC
Confidence 57999985 5 6889998 3333221 111122333444432 2433 334566899999653
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=35.56 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=28.9
Q ss_pred CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEEEE
Q psy3125 34 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIMLNV 80 (163)
Q Consensus 34 ~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l~V 80 (163)
.||.+.. .+++|.|+.++..|+|.|.-++.. .+.. ...+.+.|
T Consensus 62 ~r~~F~~----enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 62 NRFNFTS----ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHEEEET----TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEeeec----cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4777764 478999999999999999999943 3433 23344444
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.032 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=12.9
Q ss_pred CceEEec-CC--CcEEEEE
Q psy3125 1 MACTVMG-LG--RPVSWMR 16 (163)
Q Consensus 1 l~C~~~~-~~--~~v~W~k 16 (163)
|.|.+.+ +| ..|.|+|
T Consensus 21 L~C~a~gFyP~~I~v~W~k 39 (96)
T cd07697 21 YLCLLENFFPDVIQVHWRE 39 (96)
T ss_pred EEEEEEEEeCCCeEEEEEE
Confidence 5699998 45 7889998
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=33.59 Aligned_cols=56 Identities=14% Similarity=0.382 Sum_probs=33.2
Q ss_pred CceEEec-CC--CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMG-LG--RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~-~~--~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+ +| ..|.|+| ++..+. +.. ....|+.|++.. .|.+ ...+...|.|++...
T Consensus 20 L~C~a~gFyP~~i~v~W~~--dg~~~~-~~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 20 LNCYVTGFHPPDIEIRLLK--NGVKIP-KVEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEEEEeCCCCEEEEEE--CCEECC-CcEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEEEEEC
Confidence 5799998 45 7889998 444332 221 122344555432 2333 456777899999653
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.034 Score=33.73 Aligned_cols=59 Identities=17% Similarity=0.415 Sum_probs=30.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc-eE--ec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI-YT--YT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~-~~--~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|. | ..|.|+| ++..+..+. .. .. .++-|++.. .|.|..-...+...|.|++..
T Consensus 21 L~C~a~gFyP~~i~v~W~k--~g~~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 21 LTCLVKGFSPSDIFVKWLQ--NGQPLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred EEEEEeeEeCCCCEEEEEE--CCEECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEEEeEe
Confidence 57999985 4 6789998 332221111 00 00 123444332 355533333455689999965
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.05 Score=33.57 Aligned_cols=59 Identities=20% Similarity=0.492 Sum_probs=32.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecceEec--CC-CeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIYTYT--GD-ARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~~~~--~~-~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|+| ++..+..+..... .+ +.|++.. .|.+. +...|.| .|.|++...
T Consensus 26 L~C~a~gF~P~~i~v~W~k--ng~~~~~~~~~~~p~~d~~ty~~~S-------~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 26 FTCSAHGFSPRDITVKWLK--NGNELSAEQPNITPEGDSVSYNVTS-------TVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred EEEEEeeEeCCCCEEEEEE--CCEECcccccceeeCCCCCcEEEEE-------EEEEE-CccccccCceEEEEEeC
Confidence 57999975 3 6899998 4443332211111 22 1344332 24444 4555655 599999653
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.036 Score=33.16 Aligned_cols=60 Identities=10% Similarity=0.334 Sum_probs=32.4
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|+| ++.. ..+. .....++.|++.. .|.+..-.-...-.|.|++...+
T Consensus 21 L~C~a~gFyP~~i~vtW~k--~g~~-~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 21 LGCLATGFLPEPVTFTWNS--GSNS-TSGVKTYPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEEeeEECCCcEEEEeE--CCEE-CCCcEECCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 56999985 4 7889998 3332 2121 1111245555432 25544332222457999996543
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.057 Score=31.20 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=33.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|++ ++..+.. .......++.|.+.. .|.+. ..+...|.|++..
T Consensus 13 L~C~v~~f~P~~i~v~W~~--~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H 75 (83)
T PF07654_consen 13 LTCLVSGFYPKDITVTWLK--NGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTH 75 (83)
T ss_dssp EEEEEEEEBSSTEEEEEEE--TTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEE
T ss_pred EEEEEEEEECCCcEEEEEe--ccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEE
Confidence 57999975 4 6899987 3332211 111113466666553 25555 5555689999954
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=32.18 Aligned_cols=61 Identities=13% Similarity=0.326 Sum_probs=33.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce----EecC-CCeEEEeccCCCCeEEEEEcccCcCC-CeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY----TYTG-DARFSVIHPQNSDEWNMKIDYAQKRD-AGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~----~~~~-~~r~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|+| ++..+..+.. .... ++.|++.. .|.|......| .-.|.|++...+
T Consensus 23 L~Cla~gFyP~~I~V~W~k--ng~~l~~g~~~~~~~~~~~~gTYs~~S-------~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 23 LVCLATGFYPDHVSLSWKV--NGKEVTDGVATDPQALRENTSTYSISS-------RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEEEeEeCCCcEEEEEE--CCEECCCCcccccceecCCCCeEEEEE-------EEEEChHHhccCCCeEEEEEEEeC
Confidence 57999985 4 6889998 3333222211 1111 13344332 36665444434 458999996543
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.096 Score=33.17 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred eCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCC-----------------CCceEEEEecccCcCCCeeEEEE
Q psy3125 90 SAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQ-----------------NSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.+...+.++|.. .....+.|..++..+...... .....+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 355667777743 234567888776644322111 112345888776655 9999999
Q ss_pred c-CCCCCccEEEEEEE
Q psy3125 146 V-NTEPKMNMAIMLNV 160 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V 160 (163)
| ......+..+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9 66556666666665
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.12 Score=31.24 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=13.2
Q ss_pred CceEEec-C-C--CcEEEEEe
Q psy3125 1 MACTVMG-L-G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~-~-~--~~v~W~k~ 17 (163)
|.|.+.+ + | ..|.|.+.
T Consensus 24 LtClV~~f~~P~~i~V~W~~~ 44 (99)
T cd04986 24 LTCTLSGLRDPEGAVFTWTPS 44 (99)
T ss_pred EEEEEeccCCCCCeEEEEEEC
Confidence 5699998 4 4 78999873
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=28.53 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred eEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 94 LLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.+.+.|... ..+.|+. +.+..... ..+|.|.....+-.|.|.|.+
T Consensus 8 ~V~L~C~~~--tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~ 52 (69)
T cd07691 8 KVFLKCNGA--TNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKE 52 (69)
T ss_pred eEEEEecCC--CcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecC
Confidence 355667542 4588888 44333211 445999999999999999999
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.25 Score=29.87 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=38.0
Q ss_pred EeeCCCeEEEecCCC---Cce--eEEEEeCCCeEEEec------CCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 88 RLSAGPLLNFAFPDL---LTT--NIYTYTGDARFSVIH------PQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.+..|..+.+.|... +.. .+.|++++..+.-.. .......+|++..-+.+|.-.|+|+| +.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 457788899999632 223 368998876553221 11223556777655555555799999 44
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.051 Score=41.47 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=44.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
+.|-+.|.+ +.|.|.+.- ..+..... .+.-.+....-.....|.|-+....|+|.|+|.+.. .+.....+.+
T Consensus 216 ~tCg~~G~q~r~V~c~qv~-----anr~~vv~-~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c 289 (560)
T KOG4597|consen 216 STCGVQGRQYRVVTCEQVF-----ANRENVVM-RPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPC 289 (560)
T ss_pred ccccccCCcCceeeeehhh-----ccccceee-cCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecccee
Confidence 468889999 999998621 00111111 111111111113467799999999999999999943 4444445555
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.+.
T Consensus 290 ~s~ 292 (560)
T KOG4597|consen 290 SSV 292 (560)
T ss_pred eee
Confidence 443
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.38 Score=27.96 Aligned_cols=60 Identities=12% Similarity=0.307 Sum_probs=30.7
Q ss_pred CceEEe-cCC-CcEEEEEecCCee--EEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHI--LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+. +.| +.|.|+..+ ..+ ..........++.+.+. .+|.+..-...+...++|++..
T Consensus 19 ~~C~s~~~~P~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~-------S~l~~~~~~~~~~~~~~C~~~~ 82 (89)
T PF08205_consen 19 LTCSSSGGYPPPQITWYLDG-GPVVASNTTQSSSPDNGLFTVS-------STLTLTPTREDHGKTLTCRASH 82 (89)
T ss_dssp EEEEEEEEBS-EEEEEEETT-CEECEEEEEEEEETTTTTEEEE-------EEEEEETTGGGTTEEEEEEEEE
T ss_pred EEEEeCCeECCeEEEEEECC-CceeeeeeeeeeccCCCcceEE-------EEEEEEcChHHCCeEEEEEEEC
Confidence 468655 667 999999732 222 11111111222223222 2356544444555689999954
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.15 Score=41.43 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEEEEEcC--C---------CceEeeCCCeEEEecC---CCCceeEEEE
Q psy3125 47 WNMKIDYAQKRDAGIYECQVNTE--PKMNMAIMLNVDDR--G---------RGARLSAGPLLNFAFP---DLLTTNIYTY 110 (163)
Q Consensus 47 ~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~V~~~--~---------~~~~v~~~~~~~~~~~---~~~~~~~~~~ 110 (163)
..|.+...+.+|.|.|+|.+++. +..+....+.+... . ....+..+..+.+-|. ..+.....|+
T Consensus 163 s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 163 SLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred cceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 34788888999999999999553 33444334433322 1 1234556777888884 2456778888
Q ss_pred eCCCeEEEe----cCCCCc--eEEEEecccCcCCCeeEEEEc-C
Q psy3125 111 TGDARFSVI----HPQNSD--EWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 111 ~~~~~~~~~----~~~~~~--~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
.+...+... .+..+. ...+.+..-+..+.-...|.+ |
T Consensus 243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n 286 (741)
T KOG3515|consen 243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN 286 (741)
T ss_pred cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC
Confidence 776644332 122221 222333333344444477999 5
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.19 Score=30.15 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=30.7
Q ss_pred eEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 3 CTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 3 C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|... +.| +.|.|+....+.. . -......++.+.+.. +|.+..-+..|.-.++|++..
T Consensus 24 C~sa~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 24 CCAAEGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred EEccCCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEEEEEeC
Confidence 4444 667 9999996322211 0 011112234444442 366655555666689999964
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=31.56 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...|.|+.++.+|+|.|.=++ +..|.+
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcE
Confidence 345999999999999999999 777766
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.12 Score=30.43 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=18.8
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
+.|.|......|.|.|+|+| +...
T Consensus 62 s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 62 SQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEEECHHHhCCCCCEEEEEEeCCC
Confidence 45778877788999999999 5433
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.23 Score=28.77 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=22.8
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC---CCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE---PKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~---~~~~~~~~L~V 160 (163)
..|.|.....+|...|+|+| +.. ...+.+..|.|
T Consensus 46 s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~ 83 (83)
T cd07705 46 SSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV 83 (83)
T ss_pred EEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence 45777677778889999999 443 23445556554
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.63 Score=26.75 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=17.0
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+.|.+.....+|.+.|+|.| +..
T Consensus 45 s~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 45 SSLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred EEEEEEcchhhCCCEEEEEEeChh
Confidence 34777666777788999999 544
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.095 Score=37.05 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 102 LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..++...|..++++..-... .-..++.|.+.+..+.+||.|+|..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtL 56 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTL 56 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEE
Confidence 34566777766554321110 0012455999999999999999987
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.7 Score=31.15 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred eCCCeEEEecCCC-------CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 90 SAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+..++..+|... ....+.|..+++........ ...+|.+.-... =.|.|+|+| +........+.|+
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecccc-CCCceeEEEeecccCccEEEEEE
Confidence 3556677777432 35678898888766544322 445677654332 389999999 4444445555544
|
|
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.2 Score=26.51 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=40.4
Q ss_pred CCeEEEecCC---CCceeEEEEeCC-CeEEEe--cCCCC---ceEEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEE
Q psy3125 92 GPLLNFAFPD---LLTTNIYTYTGD-ARFSVI--HPQNS---DEWNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLN 159 (163)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~--~~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~ 159 (163)
.+.....|.. .+...+.|+.+. +..... ....+ ..+.|.+.....+|.-.|+|.| +.. .....++.|+
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 3456677753 456788888762 211111 11111 2456888777777778899999 443 3555566665
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 95 V 95 (95)
T cd05719 95 V 95 (95)
T ss_pred C
Confidence 4
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.54 Score=35.44 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=26.6
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCCC--eeEEEEEEEE
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEPK--MNMAIMLNVD 81 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~~~~~~l~V~ 81 (163)
..+++.+.|+.++|.|.|.|.+..... ....+.|.|.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 478899999999999999999944333 3344444443
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.13 Score=41.60 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=32.1
Q ss_pred ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 6 MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 6 ~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.+.| ..+.|+|+ ..+.. ++..+... ....|.|..+++.|+|.|+|++.+
T Consensus 155 e~~paae~~w~k~--e~~~~-------pd~n~~~~-----~d~~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 155 EGDPKAEVEWLKN--EVVID-------PDANVIRA-----SDHNLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred ccchhhhhhcccc--CCCCC-------ccccchhh-----hcCCccccchhhhhcccceeeeeh
Confidence 3556 78889983 32222 12222222 244599999999999999999954
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.5 Score=30.34 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=32.6
Q ss_pred CceEEecCC------CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~ 73 (163)
++|.++... ..|.|.. ++..+..+++. +..+|.+.. ...=.|.|+|++.. .....
T Consensus 36 IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t----------------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 36 IVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT----------------NTSSLKFNF-SKNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred EEeecCChhhcCccceEEEEEe-CCeeEEEecCC----------------cceEEEEec-cccCCCceeEEEeecccCcc
Confidence 467777652 6688976 33334332221 223455533 33447999999943 22334
Q ss_pred EEEEEE
Q psy3125 74 MAIMLN 79 (163)
Q Consensus 74 ~~~~l~ 79 (163)
..+.|+
T Consensus 98 ~~IeLk 103 (286)
T PHA03042 98 NTIELQ 103 (286)
T ss_pred EEEEEE
Confidence 444444
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=8 Score=29.65 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCeEEEEEcccCcCCCeeEEEEee---CCCCeeEEEEEEEEcCCCceEeeC-----CCeEEEecC-----CCCceeEEEE
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVN---TEPKMNMAIMLNVDDRGRGARLSA-----GPLLNFAFP-----DLLTTNIYTY 110 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~---~~~~~~~~~~l~V~~~~~~~~v~~-----~~~~~~~~~-----~~~~~~~~~~ 110 (163)
.++..|.|.++.-.|+|.|+-... +.+.....+.+.|...++.+.+.. |......|. ........|+
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 467889999999999996633332 234455666777777666555443 445555664 3345678888
Q ss_pred eCCC
Q psy3125 111 TGDA 114 (163)
Q Consensus 111 ~~~~ 114 (163)
.++.
T Consensus 284 ~nG~ 287 (490)
T PHA03271 284 QNGN 287 (490)
T ss_pred eCCc
Confidence 8755
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.63 Score=31.98 Aligned_cols=23 Identities=9% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...++|+|+.+..+..|.|+|+|
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ 119 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEA 119 (251)
T ss_pred ccceeEEeccCCcccCCceEEEE
Confidence 45677999999999999999999
|
|
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.7 Score=24.47 Aligned_cols=68 Identities=7% Similarity=-0.028 Sum_probs=39.1
Q ss_pred CCeEEEecC---CCCceeEEEEeCCCe-E-EEe-cCCCC---ceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEE
Q psy3125 92 GPLLNFAFP---DLLTTNIYTYTGDAR-F-SVI-HPQNS---DEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLN 159 (163)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~~~-~-~~~-~~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~ 159 (163)
.+.+.+.|. ..+...+.|+.+... . ... ....+ ..+.|.+.....+|.-.|+|+| +... .....+.|.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~ 94 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLS 94 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEe
Confidence 355667775 345678889876321 1 111 11111 1456888777777888899999 5543 333444443
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.3 Score=33.56 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=29.2
Q ss_pred ceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V~ 161 (163)
....+.+.++.+.|.|.|+|.. +..-...+.+.|.|.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 3456889999999999999998 555566777777764
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=33.47 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEEEEEEc
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIMLNVDD 82 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~l~V~~ 82 (163)
++|..+. +.+|.|.+++.+|+|.|.-.+...+ .....+.|.|..
T Consensus 116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 116 PPRVAVV------NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred CcceeEe------cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 4555544 5579999999999999999883322 234445666653
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.3 Score=24.53 Aligned_cols=58 Identities=7% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCeEEEecC---CCCceeEEEEeCCCeE---EEe----cCCCC--ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 92 GPLLNFAFP---DLLTTNIYTYTGDARF---SVI----HPQNS--DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~----~~~~~--~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+..+.+.|. ..+.+.+.|+.++... ... ..... ..+.|.+..-+..+...++|.| +..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 456777774 3456788898887765 111 11111 2356777766666777799999 443
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=86.13 E-value=4.7 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=15.7
Q ss_pred EEecccCcCCCeeEEEEcC
Q psy3125 129 MKIDYAQKRDAGIYECQVN 147 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a~ 147 (163)
+.......+|+|.+.|.|.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 5566778899999999993
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=85.97 E-value=5.6 Score=23.90 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=43.4
Q ss_pred CceEeeCCCeEEE-ecC---CCCceeEEEEeCCC-eEEE--ecCCC---CceEEEEecccCcCCCeeEEEEc-CCC--CC
Q psy3125 85 RGARLSAGPLLNF-AFP---DLLTTNIYTYTGDA-RFSV--IHPQN---SDEWNMKIDYAQKRDAGIYECQV-NTE--PK 151 (163)
Q Consensus 85 ~~~~v~~~~~~~~-~~~---~~~~~~~~~~~~~~-~~~~--~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a-~~~--~~ 151 (163)
..+.+.+|..+.+ .|. ..+...+.|+.+.. .... ....+ ...+.|.+...+..|.-.++|.+ ... ..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence 3445556666665 674 34567888987622 1111 11111 12456888777778888899999 332 24
Q ss_pred ccEEEEEEE
Q psy3125 152 MNMAIMLNV 160 (163)
Q Consensus 152 ~~~~~~L~V 160 (163)
......|+|
T Consensus 89 ~~~~~~L~V 97 (97)
T cd07704 89 FRITHILNV 97 (97)
T ss_pred ceeeEEeeC
Confidence 445555554
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae | Back alignment and domain information |
|---|
Probab=85.46 E-value=2.1 Score=28.29 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.5
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..-|+|.+.+.+|+|.|.=.+ -...+....+.+.|
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 445999999999999999988 55455555555544
|
These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part |
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.5 Score=31.37 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.6
Q ss_pred CceEEecC-C--CcEEEEEe
Q psy3125 1 MACTVMGL-G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~ 17 (163)
|.|.+.|. | ..|.|.|.
T Consensus 219 L~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 219 LFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred EEEEEEeEeCCccEEEEEec
Confidence 57999976 4 88899984
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.3 Score=34.20 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=30.9
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+-.|.|=+.+..|+|.|+|.| +..|...+.+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 456999999999999999999 888888888777664
|
|
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=5.8 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=28.9
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
...|+|.++..+++|.|+=.. +..+.....+.|.|.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 345999999999999999988 5555555666777765
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=80.17 E-value=6.2 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred CcCCCe-eEEEEee
Q psy3125 55 QKRDAG-IYECQVN 67 (163)
Q Consensus 55 ~~~D~G-~Y~C~~~ 67 (163)
.++|.| .|.|++.
T Consensus 70 treD~g~~fsC~A~ 83 (99)
T cd07689 70 TIEDIGKVLVCRAK 83 (99)
T ss_pred chhhCCcEEEEEEE
Confidence 477777 8999983
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-24
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V + W L + D R ++ + E ++ + D G
Sbjct: 28 CRVDQNDNTSLQWSN-PAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQ 85
Query: 62 YECQVNTEPKMNMAIMLNV 80
Y C + T P L V
Sbjct: 86 YTCSLFTMPVKTSKAYLTV 104
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 1e-17
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
L + D R ++ + E ++ + D G Y C + T P L V
Sbjct: 46 QTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTV 104
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 8e-22
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V + W L D R ++ E ++ I D
Sbjct: 58 LKCQVKDHEDSSLQWSN-PAQQTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADE 115
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G Y C + T P ++ V
Sbjct: 116 GEYTCSIFTMPVRTAKSLVTV 136
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-17
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
L D R ++ E ++ I D G Y C + T P ++ V
Sbjct: 78 QTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTV 136
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-20
Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + W+ I N Y ++++ ++H ++++ ++ + +D
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFL-NEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDE 78
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G+Y+C ++ + + V
Sbjct: 79 GVYKCLHYSDSVSTKEVKVIV 99
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-13
Identities = 8/59 (13%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+ N Y ++++ ++H ++++ ++ + +D G+Y+C ++ + + V
Sbjct: 42 TIFLNEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIV 99
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 5e-17
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYEC 64
V W + +L + Y G +F +H + +SD W +++ Q +D G+Y+C
Sbjct: 31 VFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
Query: 65 QVNTEPKMNMAIM 77
++ + M +
Sbjct: 87 IIHHKKPTGMIRI 99
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 6e-12
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 110 YTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
Y G +F +H + +SD W +++ Q +D G+Y+C ++ + M +
Sbjct: 45 YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 4e-10
Identities = 22/179 (12%), Positives = 50/179 (27%), Gaps = 35/179 (19%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARF------SVIHPQNSDEWNMKIDY 53
+ CT W + IL T S + + + I
Sbjct: 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDR-------GRGARL----SAGPLLNFAFPDL 102
+ D+ Y C+V + + ++ + G+ L G
Sbjct: 75 LKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS--------- 125
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ ++ + + + + + +D+G + C V + K+ I + V
Sbjct: 126 -SPSVQCRSPRGK------NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 1e-08
Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 37/182 (20%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE------WNMKIDY 53
+ CT W + IL T + + + I
Sbjct: 14 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 73
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDR-------GRGARLSAGPLLNFAFPDLLTTN 106
+ D+ Y C+V + + ++ + G+ L+
Sbjct: 74 LKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTL--------------- 118
Query: 107 IYTYTGDARFSV--IHPQN---SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ SV P+ + + + +D+G + C V + K+ I + V
Sbjct: 119 --ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Query: 161 DG 162
Sbjct: 177 LA 178
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-08
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 27/165 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
+ + W R L I + R S ++ + D G
Sbjct: 40 YSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK------EKDVLWFRPTLLNDTGN 93
Query: 62 YECQV-NTEPKMNMAIMLNVDDR------------------GRGARLSAGPLLNFAFPDL 102
Y C + NT +A L V + R++ P ++ FP
Sbjct: 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC-PNVDGYFPSS 152
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
+ I Y G + + + N+ A + G Y C V
Sbjct: 153 VKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-07
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 15/93 (16%)
Query: 3 CTVMGLGRP------VSWMRKRDLHILTT------NIYTYTGDARFSVIHPQNSDE-WNM 49
C + ++W R + + Y+ + F ++
Sbjct: 22 CYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81
Query: 50 KIDYAQKRDAGIYECQVNTEPKMNM--AIMLNV 80
++ + D G Y C T P+ + I L V
Sbjct: 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 106 NIYTYTGDARFSVIHPQNSDE-WNMKIDYAQKRDAGIYECQVNTEPKMNM--AIMLNVDG 162
Y+ + F ++++ + D G Y C T P+ + I L V
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
Query: 163 K 163
K
Sbjct: 117 K 117
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 48.5 bits (114), Expect = 2e-07
Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 34/193 (17%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDY 53
C W + + + R S++ + + + ++
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRG------ARLSAGPLLNFA--------- 98
RDAG Y C N + + + + + G L
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS 472
Query: 99 --------FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
G ++ V +NS ++ ++ + D G Y C V
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 151 KMN--MAIMLNVD 161
A+ + V+
Sbjct: 533 FYGETAAVYVAVE 545
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 6e-05
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 32/186 (17%)
Query: 1 MACTVMGLGRP-VSWMRKRD-----LHILTTNIYTYTGDARFSV-IHPQNSDEWNMKIDY 53
+ C + K+ L I ++ R + I +++ I+
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 54 AQKRDAGIYECQVNTEP-----KMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIY 108
+ DAG Y CQ + ++ ++ + + P++ +
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 109 TYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
+ R + +++ I +K DAG Y C ++
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 149 EPKMNM 154
+ ++
Sbjct: 312 DGQLQE 317
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/193 (10%), Positives = 48/193 (24%), Gaps = 43/193 (22%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C + R + +++ I +K DAG Y
Sbjct: 253 CRQSSGENCDVVVNTLGKRAPAFE-------GRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 63 ECQVNTE-----------------PKMNMAIMLNVDDRGRGARLS--------------- 90
C +++ + + V G+ ++
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 91 ----AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
G + + + R S++ + + + ++ RDAG Y C
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425
Query: 147 NTEPKMNMAIMLN 159
N + + +
Sbjct: 426 NGDTLWRTTVEIK 438
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 39.2 bits (90), Expect = 3e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 9 GRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68
W + + G ++ V +NS ++ ++ + D G Y C V
Sbjct: 472 SYEKYWCKWNN-TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530
Query: 69 EPKMN--MAIMLNVDDR 83
A+ + V++R
Sbjct: 531 GHFYGETAAVYVAVEER 547
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 38.1 bits (87), Expect = 8e-04
Identities = 20/174 (11%), Positives = 46/174 (26%), Gaps = 35/174 (20%)
Query: 11 PVSWMRKR-----DLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65
W R+ I + + R ++ + + + + I + D+G Y+C
Sbjct: 34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Query: 66 VNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLL---------------------- 103
+ + + +G G +
Sbjct: 94 LGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
Query: 104 -------TTNIYTYTGDARFSV-IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
++ R + I +++ I+ + DAG Y CQ +
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDD 207
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 5e-07
Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 50/198 (25%)
Query: 3 CTVM---GLGRP-VSWMRKRDLHILTTNIYTYTGDA---------RFSVIHPQNSDEWNM 49
C V V W+ +D + + Y + R ++ ++ ++
Sbjct: 27 CVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86
Query: 50 KIDYAQKRDAGIYECQVNTEPK---MNMAIMLNVD---------DRGRGARL-------- 89
+ QK D GIY C++ + + M + L V G ++
Sbjct: 87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146
Query: 90 ---------------SAGPLLNFAFPDLLTTNIYTYTGD--ARFSVIHPQNSDEWNMKID 132
++ + + + G R + + ++ ++K+
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 133 YAQKRDAGIYECQVNTEP 150
++ D GIY C +
Sbjct: 207 TVKESDQGIYTCSIYVGK 224
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-07
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 12 VSWMR----KRDLHILTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQ 65
VSW + + + I + + F ++++ + + + A G Y C+
Sbjct: 26 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 85
Query: 66 V-NTEPKMNMAIMLNV 80
+ E ++ L+V
Sbjct: 86 MKLGETEVTKQEHLSV 101
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-05
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 102 LLTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158
+ + + F ++++ + + + A G Y C++ E ++ L
Sbjct: 40 IGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
Query: 159 NV 160
+V
Sbjct: 100 SV 101
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 48/179 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P ++W R D T + G R V S ++ I + D+
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG--RIEVKGQHGSS--SLHIKDVKLSDS 75
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
G Y+C+ + ++ L+++ + + T Y++ G+ S
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEYA---PKFISNQ-----------TIYYSWEGNPINIS 121
Query: 118 ------------------VIHPQNS---------DEWNMKIDYAQKRDAGIYECQVNTE 149
V+ +N+ + ++I D G Y C
Sbjct: 122 CDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-06
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C V G + +SW + L+ N R SV+ + + I A D
Sbjct: 22 FLCQVAGDAKDKDISWF-SPNGEKLSPN------QQRISVVWNDDDS-STLTIYNANIDD 73
Query: 59 AGIYECQVNTEP 70
AGIY+C V E
Sbjct: 74 AGIYKCVVTAED 85
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
R SV+ + + I A DAGIY+C V E
Sbjct: 47 PNQQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAED 85
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 7e-06
Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 34/182 (18%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
CT + + + + D + + ID + D G+
Sbjct: 246 CTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI- 119
Y C + + + V ++ P + F + + T R
Sbjct: 305 YTCAASSGLMTKKNSTFVRVHEK---------PFVAF-GSGMESLVEATVGERVRIPAKY 354
Query: 120 --HPQNSDEW-----------------NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159
+P +W + I +RD G Y + N K + +++
Sbjct: 355 LGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 160 VD 161
+
Sbjct: 415 LV 416
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 3e-04
Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 39/189 (20%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C VS + + + D++ I AG+
Sbjct: 150 CLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK-----------GFTIPSYMISYAGMV 198
Query: 63 ECQV-NTEPKMNMAIMLNVDD------------------RGRGARLS------AGPLLNF 97
C+ + + + V G L+ ++F
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 98 A--FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154
+P + D + + ID + D G+Y C +
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 155 AIMLNVDGK 163
+ + V K
Sbjct: 319 STFVRVHEK 327
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 38.6 bits (89), Expect = 5e-04
Identities = 17/155 (10%), Positives = 38/155 (24%), Gaps = 29/155 (18%)
Query: 11 PVSWMRKRDLHILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 67
+ W+ + + + + I D G Y+C
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLT----------IPKVIGNDTGAYKCFYRE 107
Query: 68 TEPKMNMAIMLNVDDRGRGARLSAGPLLNFA---------FPDLLTTNIYTYTGDARFSV 118
T+ + + + A +S + + P L + + + AR+
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE 167
Query: 119 IHPQNSD-------EWNMKIDYAQKRDAGIYECQV 146
+ I AG+ C+
Sbjct: 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-06
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 37/194 (19%)
Query: 3 CTVMGLGRP-----VSWMRKRDLHILTTNIYTYTGDA--------RFSVIHPQNSDEWNM 49
C+ V+W + + IY + R + P +D +
Sbjct: 36 CSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD-GTI 94
Query: 50 KIDYAQKRDAGIYECQVNTEPKMNMAIMLNV-------------DDRGRGARLSAGPLLN 96
++ + D G+Y C+ T P N LN+ R + +L
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154
Query: 97 F------AFPDLLTTNIYTYTGDARFSVIHPQN---SDEWNMKIDYAQKRDAGIYECQV- 146
P + + G+A + I N + ++ +++ C V
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214
Query: 147 NTEPKMNMAIMLNV 160
+ ++ LNV
Sbjct: 215 YHMDRFKESLTLNV 228
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 51/189 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + G VSW + D +L DA + ++I +
Sbjct: 121 FECRINGSEPLQVSWYK--DGELLKD-------DANLQTS--FIHNVATLQILQTDQSHV 169
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
G Y C N + + L + + P ++ G+ F
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP-----------VSVDLALGESGTFK 218
Query: 118 VI-----------------------HPQNSDEWN--MKIDYAQKRDAGIYECQV-NTEPK 151
+ E + + K DAG Y C N K
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 152 MNMAIMLNV 160
+ + L V
Sbjct: 279 DSCSAQLGV 287
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 30/166 (18%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + G VSW +D L + ++ ++ + ++ I D
Sbjct: 404 LECELQGTPPFQVSW--HKDKRELRS-------GKKYKIM--SENFLTSIHILNVDSADI 452
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGR------GARLSAGPLLNF-----AFPDLLTT-- 105
G Y+C+ N + + R G + +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512
Query: 106 --NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ + +N ++ A+ +AG Y CQ+ E
Sbjct: 513 KDKGEIVRESDNIWISYSENIAT--LQFSRAEPANAGKYTCQIKNE 556
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 9e-04
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 39/184 (21%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V G ++W K + + Y ++ ++ I+ D G
Sbjct: 27 CKVDGTPEIRIAWY-KEHTKLRSAPAYKMQ----------FKNNVASLVINKVDHSDVGE 75
Query: 62 YECQV-NTEPKMNMAIMLNVDDR-----------------GRGARLSAGPLLNFAFPDLL 103
Y C+ N+ + + +L + +R G L
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI---NGSEPLQ 132
Query: 104 TT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159
+ + DA + ++I + G Y C N + + L
Sbjct: 133 VSWYKDGELLKDDANLQTS--FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190
Query: 160 VDGK 163
+
Sbjct: 191 LSEH 194
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-05
Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 29/166 (17%)
Query: 1 MACTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
+ C + ++W + + L Y + + + +
Sbjct: 247 IRCKAVH-VNHGFGLTW--ELENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARN 300
Query: 58 DAGIYECQV-NTEPKMNMAIMLNVDDRGR--------GARLSAGPLLNF-----AFPDLL 103
D G Y C + + ++ + ++G + F A+P +
Sbjct: 301 DTGYYTCSSSK---HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI- 356
Query: 104 TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
F + +++ K G Y +
Sbjct: 357 --RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEND 400
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-05
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 26/175 (14%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDA--------RFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
V W R ++ + T D RF ++ ++ I A+ D G Y
Sbjct: 39 VYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYF 98
Query: 64 CQVNTEPKMNMAIM-----LNVDDRGRGARLSAGPLLNFAFPDLLTTNIY---------T 109
+V + + L V + L P L+ ++ T
Sbjct: 99 FRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLT 158
Query: 110 YT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV---NTEPKMNMAIMLNV 160
++ S + P+ + + + + CQ+ + + LNV
Sbjct: 159 FSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 9e-05
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 39/161 (24%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P W + + + + S + I A D+G
Sbjct: 270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---------LIIKDAVVEDSGK 320
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI- 119
Y C V N+ ++ +L V +A + T + A F+
Sbjct: 321 YLCVVNNSVGGESVETVLTV---------TAPL----SAKIDPPTQTVDFGRPAVFTCQY 367
Query: 120 --HPQNSDEW------------NMKIDYAQKRDAGIYECQV 146
+P + W ++I+ +K D G+Y+C V
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFV 408
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 1e-04
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 54/190 (28%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + + ++ LT +N+ +I+ + D+
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTAT--------------RKNASNMEYRINKPRAEDS 68
Query: 60 GIYECQVNTEPKMNMAIMLNVD--------------DRGRGARL---SAGPLLNFAFP-- 100
G Y C + + V + G+ A + S G +P
Sbjct: 69 GEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVG------YPHP 122
Query: 101 --------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR-DAGIYECQ-VNTEP 150
+ + I +G RF +I+ +N E + I Q D G YEC N+
Sbjct: 123 EWMWRKKENGVFEEISNSSG--RFFIINKENYTE--LNIVNLQITEDPGEYECNATNSIG 178
Query: 151 KMNMAIMLNV 160
+++ +L V
Sbjct: 179 SASVSTVLRV 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 1e-04
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C + G P V W RD IL T T ++I Q D
Sbjct: 22 LRCQLQVQGEPPEVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79
Query: 59 AGIYECQV 66
G Y+C V
Sbjct: 80 TGQYQCLV 87
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 1e-04
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 16/88 (18%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYA 54
C + V+W ++ + D + + + +
Sbjct: 25 CHLSSTTAQVTQVNWEQQDQ------LLAICNADLGWHISPSFKDRVAPGPGLGLTLQSL 78
Query: 55 QKRDAGIYECQVNTEPKMNM--AIMLNV 80
D G Y C +T P I L V
Sbjct: 79 TVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 45/167 (26%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C W ++ + G+ + + + DA
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRT-------------LTLFNVTRNDAR 533
Query: 61 IYECQVNTE--PKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
Y C + + + L+V GP P + + +G S
Sbjct: 534 AYVCGIQNSVSANRSDPVTLDV---------LYGP----DTPIISPPDSSYLSGANLNLS 580
Query: 118 VI---------------HPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
PQ + + I + G Y C V+
Sbjct: 581 CHSASNPSPQYSWRINGIPQQHTQ-VLFIAKITPNNNGTYACFVSNL 626
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 2e-04
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYEC 64
++W+ + I Y + + +V + ++I K D G Y
Sbjct: 32 LTWLHTTN-----QKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 65 QVNTEPKMNMAIMLNVDDR 83
++ E + I + V +
Sbjct: 87 RMLHETEDQWKITMEVYEM 105
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 43/187 (22%)
Query: 1 MACTV-MGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C+ W+ + + D R V N+ I + D
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPA-------DGRRFVSQTTG----NLYIAKTEASD 169
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT----NIYTYTG-D 113
G Y C + + + ++LS + + + Y TG
Sbjct: 170 LGNYSCFAT-----SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 114 ARFSVI---HPQNSDEW----------------NMKIDYAQKRDAGIYECQV-NTEPKMN 153
+P +W + I D G YEC+ N + +
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT 284
Query: 154 MAIMLNV 160
+ +
Sbjct: 285 YQGRIII 291
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 3e-04
Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 34/174 (19%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ CT G P V W + + Y + ++D
Sbjct: 21 LTCTYSGFSSPRVEWKFVQGSTT---ALVCYNSQITAPYADRVTFSSSGITFSSVTRKDN 77
Query: 60 GIYECQVN---TEPKMNMAIMLNVD--------------DRGRGARL-----SAGPLLNF 97
G Y C V+ + ++I L V G A L P +
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 98 A-----FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ L T I P++ D + D D+G Y CQ
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGD---LIFDPVTAFDSGEYYCQA 188
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 52/174 (29%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G P +W+R ++ L + Y+ G + N+ I D+
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS-------------NLLISNVTDDDS 287
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTG-DARFS 117
G Y C V ++ + L V P +N+Y Y D F
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVP---PWFLNHP-----------SNLYAYESMDIEFE 333
Query: 118 ------------------VIHPQN----SDEWNMKIDYAQKRDAGIYECQVNTE 149
V+ P + N++I K D G Y+C E
Sbjct: 334 CAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENE 387
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/176 (10%), Positives = 48/176 (27%), Gaps = 26/176 (14%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C + + ++W + L Y + + + + D
Sbjct: 247 IRCKAVHVNHGFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARND 301
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNF-------------AFPDLLTT 105
G Y C + P + + ++ + ++G ++ A+P +
Sbjct: 302 TGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--- 356
Query: 106 NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
F + +++ K G Y N + + LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 3e-04
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 33/166 (19%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C + ++W + ++T + S IH + A+ D+G
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTE--------QASRIHQHKE---KLWFVPAKVEDSG 75
Query: 61 IYECQV-NTEPKMNMAIMLNVDDR------------------GRGARLSAGPLLNFAFPD 101
Y C V N+ + + I + L + F +
Sbjct: 76 HYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 102 LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV 146
+ Y + + + + + + ++ G Y C
Sbjct: 136 NELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHA 181
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 3e-04
Identities = 32/175 (18%), Positives = 49/175 (28%), Gaps = 53/175 (30%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C V G + +SW + L+ N R SV+ + + I A D
Sbjct: 22 FLCQVAGDAKDKDISWF-SPNGEKLSPN------QQRISVVWNDDDS-STLTIYNANIDD 73
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLN-FAFPDLLT--TNIYTYTG-DA 114
AGIY+C V G + A + F T G DA
Sbjct: 74 AGIYKCVVT-----AED----------GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 115 RF------------------SVIHPQNSDEWNM------KIDYAQKRDAGIYECQ 145
+ + + + +I +K D G Y C+
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM------KIDYAQKRDAGIYECQ 65
++W+ L + T V +P+ N ++ + D G Y Q
Sbjct: 31 ITWLFNETS--LAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQ 88
Query: 66 VNTEPK 71
++T+
Sbjct: 89 ISTKTS 94
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 38.6 bits (89), Expect = 4e-04
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 3 CTVMGLGRPV--SWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
CT+ + V W++ + + Q + + I A+ D+G
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQET----LTISSARVDDSG 265
Query: 61 IYECQVNTEP-KMNMAIMLNVDDRG 84
++ C N N+ L V ++G
Sbjct: 266 VFMCYANNTFGSANVTTTLKVVEKG 290
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 4e-04
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 39/187 (20%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
CT+ + +W ++ + Y F+ + + I A+ D+G
Sbjct: 233 CTIKDVSSSVYSTW-KRENSQTKLQEKYNSWHHGDFNYE-----RQATLTISSARVNDSG 286
Query: 61 IYECQV-NTEPKMNMAIMLNVDDRGR---------GARLSAGPLLNF-----AFP----- 100
++ C NT N+ L V D+G ++ G ++ AFP
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346
Query: 101 ------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153
T Y S I + + + + + G Y V N++
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSE----LHLTRLKGTEGGTYTFLVSNSDVNAA 402
Query: 154 MAIMLNV 160
+A + V
Sbjct: 403 IAFNVYV 409
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 5e-04
Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 28/185 (15%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ +P W T Y S I + + + + +
Sbjct: 333 LIVEYEAFPKPEHQQW--IYMNRTFTDKWEDYPKSENESNIRYVSE----LHLTRLKGTE 386
Query: 59 AGIYECQV-NTEPKMNMAIMLNVD--------DRGRGARL----SAGP------LLNFAF 99
G Y V N++ +A + V+ DR L + P
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 100 PDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158
+ ++ S P ID + + G EC+ N K +
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Query: 159 NVDGK 163
G
Sbjct: 507 AFKGN 511
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 43/193 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P +SW++ N + G+ R I ++ W++ ++ D
Sbjct: 143 FRCPAAGNPTPSISWLK---------NGREFRGEHRIGGIKLRHQQ-WSLVMESVVPSDR 192
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLL----------------------- 95
G Y C V N + L+V +R + L
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 252
Query: 96 -------NFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147
+ + Y + + + + + + + DAG Y C N
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Query: 148 TEPKMNMAIMLNV 160
+ + + L V
Sbjct: 313 SIGFSHHSAWLVV 325
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 5e-04
Identities = 26/187 (13%), Positives = 47/187 (25%), Gaps = 60/187 (32%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G G P W++ D L + G +++ A D+
Sbjct: 30 CPPPG-GGPMGPTVWVK--DGTGLVPSERVLVGP-------------QRLQVLNASHEDS 73
Query: 60 GIYECQVNTEPKMNMAIMLNV------DDRGRGARLSAGPLLNFAFPDLLTTNIYTYT-- 111
G Y C+ ++ + V D G + ++ P
Sbjct: 74 GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLL 133
Query: 112 --------------------------------GDARFSVIHPQNSDEWNMKIDYAQKRDA 139
G+ R I ++ W++ ++ D
Sbjct: 134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ-WSLVMESVVPSDR 192
Query: 140 GIYECQV 146
G Y C V
Sbjct: 193 GNYTCVV 199
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 6e-04
Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 46/175 (26%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + VS MR+ +L +Y ++ I A+ D+
Sbjct: 111 CLITD-PALKDSVSLMREGGRQVLRKTVYFFSPWR-------------GFIIRKAKVLDS 156
Query: 60 GIYEC--QVNTEPKMNMAIMLNVDD------------------RGRGARL----SAGPL- 94
Y C VN + I L V+ RG A++ + +
Sbjct: 157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216
Query: 95 LNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
N T D + + + + ++ +DAGIY C + +
Sbjct: 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRA----LSLNAVDFQDAGIYSCVASND 267
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 37.8 bits (88), Expect = 7e-04
Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 47/178 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G +P V W R D I + I DA
Sbjct: 24 LVCKVTGHPKPIVKWYR---------QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
+Y+ + N ++ L V+ A++ L ++ G+
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVP---AKIHLPKTLEG------MGAVHALRGEVVSIK 125
Query: 118 V--------------------------IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ + S + + +++DAG Y
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 37.8 bits (87), Expect = 7e-04
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 1 MACTVMGLGRP------VSWMRKRDLHILTTNIYTY----TGDARFSVIHPQNSDE---W 47
+ C + ++W R + + T + R + + E
Sbjct: 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79
Query: 48 NMKIDYAQKRDAGIYECQVNTEP 70
++++ + D G Y C T P
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFP 102
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 37.6 bits (87), Expect = 7e-04
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 41/177 (23%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P +SW++ + + R I ++ W++ ++ D
Sbjct: 35 FRCPAAGNPTPSISWLK--NGREFRG-------EHRIGGIKLRHQQ-WSLVMESVVPSDR 84
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR-------------------GRGARL----SAGPLL 95
G Y C V N + L+V +R G +
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 144
Query: 96 NFAFPDLLTTNIYTYTGDARFSV------IHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + + N D V I + +++ +RD G Y C+
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA 201
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 34/189 (17%), Positives = 51/189 (26%), Gaps = 47/189 (24%)
Query: 1 MACTVM-GLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C G +W+ + N+ I +K D
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-------------NLYIAKVEKSD 168
Query: 59 AGIYECQ----VNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYT----- 109
G Y C V + L + R G P + FP+ + T
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLIL--RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 110 --YTGD---------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151
G+ AR + H N ++I Q+ DAG YEC N+ K
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGK 283
Query: 152 MNMAIMLNV 160
L
Sbjct: 284 NVAKGQLTF 292
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 37.5 bits (87), Expect = 9e-04
Identities = 32/172 (18%), Positives = 47/172 (27%), Gaps = 53/172 (30%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
CT +G + W + I++T + S + I A DAGIY
Sbjct: 26 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT----------IYNANIEDAGIY 75
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLN-FAFPDLLT--TNIYTYTG-DARFSV 118
CQ + G A +L + + G DA
Sbjct: 76 RCQAT-----DAK----------GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 119 I---HPQNSDEW---------------------NMKIDYAQKRDAGIYECQV 146
P + W N++I K D GIY C+
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 37.2 bits (86), Expect = 9e-04
Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 34/188 (18%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++C G P V W + + + + + + D
Sbjct: 24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT---GITFKSVTREDT 80
Query: 60 GIYECQVN---TEPKMNMAIMLNVD--------------DRGRGARL----SAG-PLLNF 97
G Y C V+ + + L V G A L G P +
Sbjct: 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY 140
Query: 98 A-FPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152
F D + T T V++P + D D G Y C+ N
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 153 NMAIMLNV 160
+ + +
Sbjct: 198 MTSNAVRM 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.88 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.87 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.87 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.87 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.86 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.86 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.85 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.85 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.85 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.85 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.85 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.85 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.85 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.85 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.85 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.85 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.84 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.84 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.84 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.84 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.84 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.83 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.83 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.83 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.83 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.83 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.83 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.82 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.82 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.82 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.82 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.82 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.82 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.82 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.82 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.82 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.82 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.82 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.82 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.82 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.82 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.82 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.82 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.82 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.81 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.81 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.81 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.81 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.81 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.81 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.81 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.8 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.8 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.8 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.8 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.8 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.8 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.8 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.8 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.8 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.8 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.8 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.8 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.8 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.79 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.79 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.79 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.79 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.79 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.79 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.79 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.79 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.79 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.79 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.79 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.79 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.78 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.78 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.78 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.78 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.78 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.78 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.78 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.78 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.78 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.78 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.78 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.77 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.77 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.77 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.77 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.77 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.77 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.77 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.77 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.77 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.77 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.76 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.76 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.76 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.76 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.76 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.76 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.76 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.76 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.75 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.75 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.75 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.75 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.75 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.75 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.75 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.75 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.75 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.75 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.75 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.75 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.74 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.74 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.74 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.74 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.74 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.74 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.73 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.73 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.73 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.73 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.73 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.73 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.73 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.73 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.73 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.73 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.73 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.73 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.73 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.72 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.72 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.72 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.71 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.71 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.71 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.71 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.71 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.71 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.7 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.7 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.7 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.7 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.7 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.69 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.69 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.69 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.69 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.69 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.69 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.69 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.68 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.68 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.68 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.68 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.68 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.68 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.68 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.68 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.67 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.67 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.67 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.67 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.67 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.66 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.66 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.66 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.66 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.65 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.65 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.65 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.65 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.65 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.65 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.65 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.65 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.65 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.64 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.64 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.64 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.63 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.63 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.63 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.63 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.62 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.62 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.62 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.61 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.61 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.61 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.61 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.6 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.6 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.6 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.6 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.6 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.6 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.59 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.59 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.59 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.59 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.59 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.58 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.58 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.58 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.58 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.57 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.57 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.56 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.54 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.54 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.53 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.53 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.52 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.51 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.51 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.5 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.5 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.49 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.49 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.48 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.48 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.48 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.47 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.47 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.47 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.47 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.46 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.46 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.44 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 99.43 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.42 | |
| 4f9p_D | 254 | 103.2 anti-BTN3A1 antibody fragment; B7 superfamil | 99.42 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.42 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.41 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.41 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.41 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.41 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.4 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.4 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.39 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.39 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.39 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.39 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.38 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.37 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.37 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.37 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.36 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.36 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.35 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.35 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.35 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.34 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.34 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.34 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.33 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.33 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.32 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.32 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.31 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.31 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.31 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.31 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.31 | |
| 1zox_A | 113 | CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I | 99.3 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.3 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.3 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.3 | |
| 4f9l_D | 259 | 20.1 anti-BTN3A1 antibody fragment; B7 superfamily | 99.3 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.29 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.29 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.29 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.29 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.28 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.27 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.26 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.26 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.25 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.25 | |
| 1neu_A | 124 | Myelin P0 protein; structural protein, glycoprotei | 99.24 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.24 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.23 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.23 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.23 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.23 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.23 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.22 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.22 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.22 | |
| 4gos_A | 125 | V-SET domain-containing T-cell activation inhibit; | 99.22 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.21 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.21 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.21 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.21 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.2 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.2 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.2 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.19 | |
| 1eaj_A | 126 | Coxsackie virus and adenovirus receptor; virus/vir | 99.19 | |
| 2oyp_A | 109 | Hepatitis A virus cellular receptor 2; TIM-3, T-ce | 99.19 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.19 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.19 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.18 | |
| 2or8_A | 116 | Hepatitis A virus cellular receptor 1 homolog; bet | 99.18 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.18 | |
| 3rrq_A | 129 | Protein PD-1, programmed cell death protein 1; pro | 99.17 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.17 | |
| 2ptt_A | 110 | CD48 antigen; CD244, CD48, NK cell receptor, X-RAY | 99.17 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.16 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.16 | |
| 1pko_A | 139 | Myelin oligodendrocyte glycoprotein; IGV-domain, i | 99.16 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.16 | |
| 4gjt_B | 123 | Poliovirus receptor-related protein 4; six-bladed | 99.16 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.16 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.15 | |
| 1h5b_A | 113 | Murine T cell receptor (TCR) valpha domain; immune | 99.15 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.15 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.15 | |
| 1mqk_L | 120 | Antibody 7E2 FV fragment, light chain; membrane pr | 99.15 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.15 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.15 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.14 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 99.14 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.14 | |
| 3q0h_A | 117 | T cell immunoreceptor with IG and ITIM domains; im | 99.14 | |
| 3udw_C | 118 | Poliovirus receptor; PVR tigit IGSF signal transdu | 99.14 | |
| 3bp6_A | 117 | Programmed cell death protein 1; PD-1, PD-L2, comp | 99.13 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.13 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.13 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.13 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.12 | |
| 2nms_A | 124 | CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4 | 99.12 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.12 | |
| 1nko_A | 132 | Sialic acid binding IG-like lectin 7; immunoglobul | 99.12 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.12 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.11 | |
| 2q87_A | 110 | CMRF35-H antigen; all-beta, immunoglobulin, IG-sup | 99.11 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.11 | |
| 1hkf_A | 122 | NKP44, NK cell activating receptor; natural cytoto | 99.1 | |
| 2q20_A | 109 | VK1 O18/O8 germline light chain variable domain; A | 99.1 | |
| 2or7_A | 115 | T-cell immunoglobulin and mucin domain- containing | 99.1 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.09 | |
| 3bik_B | 134 | Programmed cell death protein 1; CO-stimulation, r | 99.09 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.09 | |
| 2e27_L | 119 | Anti-ciguatoxin antibody, light chain; immunoglobu | 99.09 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.08 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.08 | |
| 2yc1_B | 146 | Single chain antibody fragment 9004G; immune syste | 99.08 | |
| 2eys_A | 210 | NKT15; natural killer T cell receptor, immune syst | 99.08 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.08 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.07 | |
| 1sq2_N | 113 | Novel antigen receptor; immunoglobulin fold, prote | 99.07 | |
| 2coq_A | 108 | NEW antigen receptor variable domain; IG VNAR, nat | 99.07 | |
| 3bia_X | 116 | T-cell immunoglobulin and mucin domain- containing | 99.07 | |
| 1i8k_A | 107 | Epidermal growth factor receptor antibody MR1SCFV | 99.07 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.06 | |
| 1qfw_M | 108 | FV, antibody (anti beta subunit) (light chain); gl | 99.06 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.06 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.06 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.06 | |
| 2ywz_A | 111 | NEW antigen receptor variable domain; IG VNAR, imm | 99.06 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.06 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.05 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.05 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.05 | |
| 1ncn_A | 110 | T lymphocyte activation antigen CD86; IG V, beta s | 99.05 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.04 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.04 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.04 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.04 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.03 | |
| 2i24_N | 121 | NEW antigen receptor PBLA8; immunoglobulin fold, i | 99.03 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.02 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.02 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.02 | |
| 1i3g_L | 111 | Antibody FV fragment; antibiotic; 2.44A {Mus muscu | 99.02 | |
| 2z35_A | 112 | T-cell receptor alpha-chain; immune receptor, immu | 99.02 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.02 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.02 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.01 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.01 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.0 | |
| 3moq_A | 126 | NEW antigen receptor variable domain, P3(40) PEPT | 99.0 | |
| 1xed_A | 117 | Polymeric-immunoglobulin receptor; IG-like fold, i | 99.0 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.0 | |
| 2xt1_B | 121 | Camelid VHH 9; viral protein-immune system complex | 99.0 | |
| 1fo0_A | 116 | Protein (BM3.3 T cell receptor alpha-chain); class | 98.99 | |
| 2d9c_A | 136 | Signal-regulatory protein beta-1; beta-sandwich, S | 98.99 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 98.99 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 98.99 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 98.97 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 98.97 | |
| 2qhl_A | 111 | Novel immune-type receptor 10; immunoglobulin vari | 98.96 | |
| 2p45_B | 123 | Antibody CAB-RN05; seMet phasing, camelid single-d | 98.96 | |
| 2atp_B | 115 | T-cell surface glycoprotein CD8 beta chain; CD8AB, | 98.96 | |
| 1pko_A | 139 | Myelin oligodendrocyte glycoprotein; IGV-domain, i | 98.96 | |
| 2edo_A | 121 | CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte | 98.95 | |
| 1tvd_A | 116 | T cell receptor, ES204 V delta; immunoreceptor, TC | 98.95 | |
| 2qsq_A | 111 | Carcinoembryonic antigen-related cell adhesion MO; | 98.95 | |
| 3r0n_A | 128 | Poliovirus receptor-related protein 2; IG-domain, | 98.95 | |
| 3bj9_1 | 116 | Immunoglobulin IOTA chain, immunoglobulin lambda- | 98.95 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 98.94 | |
| 1xt5_A | 135 | Variable region-containing chitin-binding protein | 98.94 | |
| 3udw_C | 118 | Poliovirus receptor; PVR tigit IGSF signal transdu | 98.94 | |
| 1u3h_A | 110 | T-cell receptor alpha-chain; complex, immune syste | 98.48 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 98.94 | |
| 1xt5_A | 135 | Variable region-containing chitin-binding protein | 98.94 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 98.94 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 98.94 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 98.93 | |
| 2yc1_A | 117 | Single chain antibody fragment 9004G; immune syste | 98.93 | |
| 1eeq_A | 114 | Kappa-4 immunoglobulin (light chain); protein stab | 98.93 | |
| 1qfo_A | 119 | Protein (sialoadhesin); immunoglobulin superfamily | 98.93 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 98.93 | |
| 1eaj_A | 126 | Coxsackie virus and adenovirus receptor; virus/vir | 98.93 | |
| 1u9k_A | 114 | Triggering receptor expressed on myeloid cells 1; | 98.93 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 98.92 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 98.92 | |
| 1j05_H | 121 | T84.66 antibody, anti-CEA MAB T84.66, heavy chain; | 98.92 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 98.92 | |
| 2bnu_A | 203 | TCR alpha chain, T-cell receptor alpha chain C reg | 98.92 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 98.91 | |
| 1pew_A | 109 | JTO2, A lambda-6 type immunoglobulin light chain, | 98.91 | |
| 3u6r_L | 143 | Antibody 1:7 (light chain); IG-like domain, neutra | 98.91 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.91 | |
| 2h32_A | 126 | Immunoglobulin IOTA chain; beta sheets, V and C-ty | 98.91 | |
| 1j05_L | 111 | T84.66 antibody, anti-CEA MAB T84.66, light chain; | 98.91 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 98.91 | |
| 1mfa_H | 120 | IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu | 98.9 | |
| 1kxv_C | 121 | Camelid VHH domain CAB10; beta 8 alpha 8, beta bar | 98.9 | |
| 3b9v_A | 120 | Heavy chain variable domain; antibody engineering, | 98.9 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 98.9 | |
| 1dlf_L | 113 | Anti-dansyl immunoglobulin IGG2A(S); FV fragment; | 98.9 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 98.9 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 98.9 | |
| 2oyp_A | 109 | Hepatitis A virus cellular receptor 2; TIM-3, T-ce | 98.9 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 98.89 | |
| 1n4x_H | 120 | Immunoglobulin heavy chain variable region; immune | 98.89 | |
| 3qr2_A | 137 | Basigin; CD147, EMMPRIN, immunoglobulin-like domai | 98.89 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 98.89 | |
| 1dlf_H | 124 | Anti-dansyl immunoglobulin IGG2A(S); FV fragment; | 98.89 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 98.89 | |
| 2frg_P | 106 | TREM-like transcript-1; immunoglobulin-like, beta- | 98.89 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 98.89 | |
| 3rrq_A | 129 | Protein PD-1, programmed cell death protein 1; pro | 98.88 | |
| 2d7t_H | 139 | Anti polyhydroxybutyrate antibody FV, heavy chain; | 98.88 | |
| 1kxt_B | 127 | Immunoglobulin VHH fragment; alpha 8 beta 8, beta | 98.88 | |
| 1jtp_A | 148 | Single-domain antibody; immunoglobulin, heavy chai | 98.88 | |
| 2nw2_A | 200 | ELS4 TCR alpha chain; T cell receptor, immune syst | 98.88 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 98.88 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 98.88 | |
| 1a2y_B | 116 | IGG1-kappa D1.3 FV (heavy chain); complex (immunog | 98.88 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 98.88 | |
| 1sjv_A | 114 | R9; camelids antibody, domain swapping, heavy chai | 98.88 | |
| 2jju_A | 127 | Signal regulatory protein beta-1; immunoglobulin d | 98.88 | |
| 2yz1_A | 120 | Tyrosine-protein phosphatase non-receptor type sub | 98.87 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 98.87 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 98.87 | |
| 2q86_A | 229 | Valpha14 TCR; INKT cells, TCR, glycolipid recognit | 98.87 | |
| 3bdb_A | 137 | Novel immune-type receptor 11; immunoglobulin vari | 98.87 | |
| 2otu_A | 115 | FV light chain variable domain; antibody FV polygl | 98.87 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 98.86 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 98.86 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 98.86 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 98.86 | |
| 1kgc_D | 206 | T-cell receptor alpha chain; LC13 clone, immune sy | 98.86 | |
| 1yc7_A | 124 | Anti-VSG immunoglobulin heavy chain variable domai | 98.86 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.86 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 98.86 | |
| 2oi9_C | 121 | V beta, T cell receptor beta chain; TCR, MHC, immu | 98.86 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 98.85 | |
| 3t0v_A | 123 | Immunoglobulin variable lambda domain; immunoglobu | 98.85 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 98.85 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 98.84 | |
| 4ffy_L | 126 | DENV1-E111 single chain variable fragment (light; | 98.84 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 98.84 | |
| 1oaq_L | 120 | Light chain; antibody, allergy, IGE, conformationa | 98.84 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 98.84 | |
| 2wzp_D | 123 | Camelid VHH5; baseplate, viral protein; 2.60A {Lam | 98.84 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 98.84 | |
| 3kg5_A | 134 | B-cell antigen receptor complex-associated protei | 98.83 | |
| 4ei6_A | 208 | Valpha1 XV19 type II natural killer T cell recept | 98.83 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 98.83 | |
| 1mqk_H | 127 | Antibody 7E2 FV fragment, heavy chain; membrane pr | 98.83 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 98.83 | |
| 3k74_B | 115 | Nanobody; immunoglobulin, antibiotic resista metho | 98.83 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 98.83 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 98.83 | |
| 3dmm_C | 166 | T-cell surface glycoprotein CD8 alpha chain; T cel | 98.83 | |
| 2qsq_A | 111 | Carcinoembryonic antigen-related cell adhesion MO; | 98.82 | |
| 2pkd_A | 111 | SLAM family member 5; signaling lymphocyte activat | 98.82 | |
| 3rgv_A | 200 | YAE62 TCR A chain; TCR, MHC, MHC class I, immune s | 98.82 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 98.81 |
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=133.40 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=106.6
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+ .| +.|.|+| ++.. +..+.|+.+..+...+..+|.|.+++.+|+|.|+|++.+ +.......+
T Consensus 22 l~c~~~~~~P~p~i~W~k--ng~~-------l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N-g~a~~~~~~ 91 (207)
T 3rbs_A 22 FWMQAEKLSGNAKVNYIF--NEKE-------IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHSTV 91 (207)
T ss_dssp EEEECSCCCSCCEEEEEE--TTEE-------ECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE-TTEEEEEEE
T ss_pred EEEEEecCCCCCEEEEEE--CCEE-------CccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC-CCeEEEEEE
Confidence 4688875 57 9999998 3332 234566666653334577899999999999999999965 444433333
Q ss_pred EEEc---------------------CC-----CceEeeCCCeEEEecC--CC-CceeEEEEeCCCeEEEecC--CCCceE
Q psy3125 79 NVDD---------------------RG-----RGARLSAGPLLNFAFP--DL-LTTNIYTYTGDARFSVIHP--QNSDEW 127 (163)
Q Consensus 79 ~V~~---------------------~~-----~~~~v~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~--~~~~~~ 127 (163)
.+.. ++ ....+..|..+.+.|. .. +.+.+.|++++..+..... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~ 171 (207)
T 3rbs_A 92 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 171 (207)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEE
T ss_pred EEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEE
Confidence 2210 11 0135667888999996 33 5678999998775533221 123345
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.|.|.+++.+|+|.|+|.| |..|..+..+.|.++
T Consensus 172 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 172 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp EEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 7999999999999999999 999999999988765
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=129.88 Aligned_cols=150 Identities=13% Similarity=0.275 Sum_probs=110.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| +.. .+....++.+.. .....+|.|.+++.+|+|.|+|.+.+ .+.....+.|
T Consensus 27 l~C~~~~~p~~~v~W~~--~~~-------~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l 95 (197)
T 3lcy_A 27 LSCQIVGRPLPDIKWYR--FGK-------ELIQSRKYKMSS--DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95 (197)
T ss_dssp EEEEEEEESCCEEEEEE--TTE-------EECCCSSEEEEE--SSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEE--CCE-------ECCCCccEEEEe--CCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEE
Confidence 579999988 9999998 322 223456676665 34567899999999999999999953 4455566667
Q ss_pred EEEcCC---------CceEeeCCCeEEEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCc-CCCe
Q psy3125 79 NVDDRG---------RGARLSAGPLLNFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQK-RDAG 140 (163)
Q Consensus 79 ~V~~~~---------~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~-~D~G 140 (163)
.|..++ ....+..|..+.+.|. ..+.+.+.|++++..+ .+.. ......|.|.++.. +|+|
T Consensus 96 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G 173 (197)
T 3lcy_A 96 LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN--TEHYTHLVMKNVQRKTHAG 173 (197)
T ss_dssp EEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE--CSSEEEEEESSCCHHHHCE
T ss_pred EEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE--cCCEEEEEEccccchhhCc
Confidence 766431 2234567888899886 3345678898875432 2221 12346799999995 8999
Q ss_pred eEEEEc-CCCCCccEEEEEEEecC
Q psy3125 141 IYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 141 ~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
.|+|.| |..|..+..+.|.|.+|
T Consensus 174 ~Y~C~a~n~~g~~~~~~~l~V~~k 197 (197)
T 3lcy_A 174 KYKVQLSNVFGTVDAILDVEIQDK 197 (197)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECC
T ss_pred eEEEEEEcCcCceEEEEEEEEecC
Confidence 999999 99999999999999986
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=127.68 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=107.0
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|+| ++.. +....|+.+... .+..+|.|.+++.+|+|.|+|.+.+ .+.....+.
T Consensus 22 l~C~~~~~~p~~~i~W~~--~g~~-------i~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~ 90 (212)
T 2r15_A 22 LYSFVTYYVEDLKVNWSH--NGSA-------IRYSDRVKTGVT--GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 90 (212)
T ss_dssp EEEEBSSCCSSCEEEEEE--TTEE-------CCCCSSEEEEEE--TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCceEEEEE--CCEE-------ccCCCeEEEEEe--CCEEEEEECCCCcccCEEEEEEEecCCcceEEEEE
Confidence 578888854 9999998 3322 234467766652 3567899999999999999999954 333444444
Q ss_pred EEEEc---------------------------CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCC
Q psy3125 78 LNVDD---------------------------RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQ 122 (163)
Q Consensus 78 l~V~~---------------------------~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~ 122 (163)
|.|.. .+....+..|..+.+.|. ..+.+.+.|++++..+. +...
T Consensus 91 l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~- 169 (212)
T 2r15_A 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE- 169 (212)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE-
T ss_pred EEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEc-
Confidence 54321 123456778888999996 34556789988765332 2211
Q ss_pred CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
......|.|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 170 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 133568999999999999999999 9999999999999864
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=128.08 Aligned_cols=154 Identities=18% Similarity=0.326 Sum_probs=107.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc-CCCeeEEEEeeC-CCC-eeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNT-EPK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~~-~~~-~~~~~ 76 (163)
|.|.+.+.| +.|.|+| ++..+. ...+|+.+... ..+..+|.|.+++. +|+|.|+|.+.+ .+. .+..+
T Consensus 26 l~C~~~g~p~~~v~W~~--~~~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~ 96 (212)
T 2yd1_A 26 FYCAARGDPPPSIVWRK--NGKKVS------GTQSRYTVLEQ-PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 96 (212)
T ss_dssp EEEEEECSSCCEEEEEE--TTEECC------TTSTTEEEEEE-TTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEE
T ss_pred EEEEEccCCCCeEEEEE--CCEECC------CCcceeEEEEc-CCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeE
Confidence 689999999 9999998 332221 24567776643 23457899999999 999999999954 444 56777
Q ss_pred EEEEEcCC-------------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCe
Q psy3125 77 MLNVDDRG-------------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 77 ~l~V~~~~-------------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G 140 (163)
.|.|.... ....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|
T Consensus 97 ~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 176 (212)
T 2yd1_A 97 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQG 176 (212)
T ss_dssp EEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCE
T ss_pred EEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCE
Confidence 88887541 22345568888898863 445678898876533211000 001226999999999999
Q ss_pred eEEEEc-CCCCCccE-EEEEEEecC
Q psy3125 141 IYECQV-NTEPKMNM-AIMLNVDGK 163 (163)
Q Consensus 141 ~Y~C~a-~~~~~~~~-~~~L~V~~~ 163 (163)
.|+|.| |..|.... .+.|.|+++
T Consensus 177 ~Y~C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 177 KYECVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EEEEEeecCCCceeEEEEEEEEEec
Confidence 999999 88887765 489998763
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=128.71 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=112.9
Q ss_pred CceEEecCC-----CcEEEEEecCC------ee-EEecceEecC-----CCeEEEec-cCCCCeEEEEEcccCcCCCeeE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL------HI-LTTNIYTYTG-----DARFSVIH-PQNSDEWNMKIDYAQKRDAGIY 62 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~------~~-~~~~~~~~~~-----~~r~~~~~-~~~~~~~~L~i~~v~~~D~G~Y 62 (163)
|.|.+.+.+ +.|.|+|.+.. .+ ...++..... .+|+.+.. ....++.+|.|.+++.+|+|.|
T Consensus 20 L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 99 (214)
T 3jz7_A 20 LPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTY 99 (214)
T ss_dssp ECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCChhhCeEE
Confidence 679998876 48999985321 22 2223333322 56777754 1123578899999999999999
Q ss_pred EEEee-CCCCeeEEEEEEEEcCCCce------EeeCCCeEEEecCC---CCceeEEEEeCCCeEEEe--cCCCCceEEEE
Q psy3125 63 ECQVN-TEPKMNMAIMLNVDDRGRGA------RLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVI--HPQNSDEWNMK 130 (163)
Q Consensus 63 ~C~~~-~~~~~~~~~~l~V~~~~~~~------~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~ 130 (163)
+|.+. ..+.....+.|.|..++... .+..|..+.+.|.. .+.+.+.|++.+....+. .........|.
T Consensus 100 ~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~ 179 (214)
T 3jz7_A 100 QCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179 (214)
T ss_dssp EEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEE
T ss_pred EEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceeccCCCEEE
Confidence 99994 44456777888998775432 24567889999975 345678998854322221 11112234799
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 180 i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp ECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred EecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 9999999999999999 9999999999998863
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=130.35 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=110.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....++.+... ....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 119 l~C~~~g~p~~~v~W~~--~~~~-------~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 187 (284)
T 2rik_A 119 YECKIGGSPEIKVLWYK--DETE-------IQESSKFRMSFV--ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187 (284)
T ss_dssp EEEEEESSSCCEEEEEE--TTEE-------CCCSSSEEEEEE--TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeeeCCCEEEEEE--CCEE-------CcCCCcEEEEEc--CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEE
Confidence 579999999 9999998 3222 223345544431 347789999999999999999994 45566777888
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.|
T Consensus 188 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 267 (284)
T 2rik_A 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267 (284)
T ss_dssp EEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence 888763 23456678889999964 34567889887654321110 1123467999999999999999999
Q ss_pred -CCCCCccEEEEEEEe
Q psy3125 147 -NTEPKMNMAIMLNVD 161 (163)
Q Consensus 147 -~~~~~~~~~~~L~V~ 161 (163)
|..|..+..+.|.|+
T Consensus 268 ~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 268 SNDVGSYTCVGSITLK 283 (284)
T ss_dssp EETTEEEEEEEEEEEC
T ss_pred EeCCCceeEEEEEEEc
Confidence 999999999999986
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=124.44 Aligned_cols=154 Identities=15% Similarity=0.227 Sum_probs=108.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEe-c----CCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEeeCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTY-T----GDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~-~----~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~ 73 (163)
|.|.+.+.+ +.|.|+|.+...++....... . ..+|+.+.... ..+..+|.|.+++.+|+|.|+|.+.+. .
T Consensus 15 L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~---~ 91 (184)
T 2ny1_B 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ---K 91 (184)
T ss_dssp ECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTE---E
T ss_pred EEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcC---C
Confidence 679999888 999999844332332111111 1 13455544310 123567999999999999999999543 1
Q ss_pred EEEEEEEEc--CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 74 MAIMLNVDD--RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 74 ~~~~l~V~~--~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
..+.|.|.. .++...+..|..+.+.|.. .+.+.+.|+.++...... ...|.|.+++.+|+|.|+|.| |.
T Consensus 92 ~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~ 165 (184)
T 2ny1_B 92 EEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVSQLELQDSGTWTCTVLQN 165 (184)
T ss_dssp EEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEE------SSEEEESSCCGGGCEEEEEEEEET
T ss_pred CcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccC------ceEEEEecCCcCCCeEEEEEEEEC
Confidence 244455542 2344567889999999964 456788999887766422 345999999999999999999 88
Q ss_pred CCCccEEEEEEEecC
Q psy3125 149 EPKMNMAIMLNVDGK 163 (163)
Q Consensus 149 ~~~~~~~~~L~V~~~ 163 (163)
.+..+..+.|.|.+.
T Consensus 166 ~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 166 QKKVEFKIDIVVLAF 180 (184)
T ss_dssp TEEEEEEEEEEEECC
T ss_pred CceEEEEEEEEEEec
Confidence 889999999999873
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=126.06 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=109.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ....++.+... ..+..+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 24 l~C~~~~~p~~~v~W~~--~~~~~~------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 94 (197)
T 2j8h_A 24 LVCKVTGHPKPIVKWYR--QGKEII------ADGLKYRIQEF-KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94 (197)
T ss_dssp EEEEEECSSCCEEEEEE--TTEECC------CCSSSEEEEEE-TTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeecCCCEEEEEE--CCEECc------cCCCcEEEEEc-CCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEE
Confidence 689999998 9999998 332221 12356665542 2346789999999999999999994 44455667777
Q ss_pred EEEcCC-----------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC----CCCceEEEEecc-cCcCCCe
Q psy3125 79 NVDDRG-----------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDY-AQKRDAG 140 (163)
Q Consensus 79 ~V~~~~-----------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~-v~~~D~G 140 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+ ++.+|+|
T Consensus 95 ~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G 174 (197)
T 2j8h_A 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174 (197)
T ss_dssp EEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCE
T ss_pred EEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCE
Confidence 776532 12345668888888863 34568899987764431110 112356799999 9999999
Q ss_pred eEEEEc-CCCCCccEEEEEEEe
Q psy3125 141 IYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 141 ~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.|+|.| |..|..+..+.|.|.
T Consensus 175 ~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 175 FYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEEEeCCCcEeEEEEEEEe
Confidence 999999 999999999999986
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=120.19 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=103.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|+| ++..+ ....++ ..+.+|.|.+++.+|+|.|+|.+.+.+..+..+.
T Consensus 23 l~C~~~~~~~~~~~v~W~~--~~~~~-------~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 86 (190)
T 2wv3_A 23 LQCNLTSSSHTLMYSYWTK--NGVEL-------TATRKN-------ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT 86 (190)
T ss_dssp EEEEEEECSSCEEEEEEEE--TTEEC-------TTCCBC-------CSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEeccCCCCceEEEEEE--CCEEC-------cccceE-------eccEEEEEecCCcccCEEEEEEEEeCCcccccEE
Confidence 679999876 6899998 33222 111111 1367899999999999999999955466677788
Q ss_pred EEEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeC--CC---------eEEEecCCCCceEEEEecccC-cC
Q psy3125 78 LNVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTG--DA---------RFSVIHPQNSDEWNMKIDYAQ-KR 137 (163)
Q Consensus 78 l~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~L~i~~v~-~~ 137 (163)
|.|..++ ....+..|..+.+.|.. .+.+.+.|++. +. ++.+.. ......|.|.+++ .+
T Consensus 87 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~ 164 (190)
T 2wv3_A 87 IEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN--KENYTELNIVNLQITE 164 (190)
T ss_dssp EEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE--CSSEEEEEECSCCTTT
T ss_pred EEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec--CCCeeEEEEEeccccC
Confidence 8888764 23356678889999963 45568889883 32 222221 1223579999999 79
Q ss_pred CCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 138 DAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
|+|.|+|.| |..|..+..+.|.|+
T Consensus 165 d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 165 DPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCEEEEEEEEecCCcceeEEEEEEE
Confidence 999999999 999999999999986
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=130.07 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=109.7
Q ss_pred CceEEe---cCC-CcEEEEEecCCe-----eEEecceEec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVM---GLG-RPVSWMRKRDLH-----ILTTNIYTYT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~---~~~-~~v~W~k~~~~~-----~~~~~~~~~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+. +.+ +.|.|+|.+... ++........ ..+|+.+.......+.+|.|.+++.+|+|.|+|.+.
T Consensus 25 L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 104 (268)
T 3mj6_A 25 MGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIR 104 (268)
T ss_dssp ECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEE
Confidence 679988 666 889999954311 1111111101 135777654434567889999999999999999995
Q ss_pred CC-C--CeeEEEEEEEEcC-CCceEeeCCCeEEEecCC---C--CceeEEEEeCCC------------------------
Q psy3125 68 TE-P--KMNMAIMLNVDDR-GRGARLSAGPLLNFAFPD---L--LTTNIYTYTGDA------------------------ 114 (163)
Q Consensus 68 ~~-~--~~~~~~~l~V~~~-~~~~~v~~~~~~~~~~~~---~--~~~~~~~~~~~~------------------------ 114 (163)
+. . .....+.|.|... +....+..|..+.+.|.. . +.+.+.|++.+.
T Consensus 105 ~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (268)
T 3mj6_A 105 LKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184 (268)
T ss_dssp ETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSS
T ss_pred ecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCcccccccc
Confidence 32 2 2345666777643 445678889999999976 2 456889987422
Q ss_pred ----eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 ----RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
++.+..........|.|.+++.+|+|.|+|.| |..+..+..+.|.|..
T Consensus 185 ~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 185 RFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp TTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 11111111123457999999999999999999 8888888999998843
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=128.98 Aligned_cols=151 Identities=15% Similarity=0.241 Sum_probs=110.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....++.+... .+..+|.|.+++.+|+|.|+|.+. ..+..+..+.|
T Consensus 25 l~C~~~g~p~~~v~W~~--~~~~-------~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l 93 (284)
T 2rik_A 25 FKCHVTGTAPIKITWAK--DNRE-------IRPGGNYKMTLV--ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93 (284)
T ss_dssp EEEEEESSSCCEEEEEE--TTEE-------CCSSSSEEEEEE--TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEE--CCEE-------CcCCCcEEEEEc--CCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEE
Confidence 689999998 9999998 3222 233456655432 357889999999999999999994 44556677788
Q ss_pred EEEcCCC-------ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEE
Q psy3125 79 NVDDRGR-------GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 79 ~V~~~~~-------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.|..++. ...+..|..+.+.|.. .+...+.|++++..+..... .......|.|.+++.+|+|.|+|.
T Consensus 94 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (284)
T 2rik_A 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173 (284)
T ss_dssp EEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred EccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence 8876642 2346678888999963 45668899987653321110 112356799999999999999999
Q ss_pred c-CCCCCccEEEEEEEec
Q psy3125 146 V-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~~ 162 (163)
| |..+..+..+.|.|..
T Consensus 174 a~n~~g~~~~~~~l~V~~ 191 (284)
T 2rik_A 174 AHNAAGSASSSTSLKVKE 191 (284)
T ss_dssp EECSSCEEEEEEEEEEEC
T ss_pred EEcCCCceeEEEEEEEec
Confidence 9 8888888899998864
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=143.21 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=112.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++.. +..+.++.+... ....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 404 l~C~~~g~P~p~v~W~k--~g~~-------l~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 472 (570)
T 3b43_A 404 LECELQGTPPFQVSWHK--DKRE-------LRSGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472 (570)
T ss_dssp EEEEEESSSSCCCEEEE--TTEE-------CCSSSSEEEEEE--TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEE--CCEE-------CcCCCCEEEEEc--CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence 689999999 9999998 3322 234557776642 34568999999999999999999 445666677778
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-----CCCCceEEEEecccCcCCCeeEEEE
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-----PQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++....... ........|.|.+++.+|+|.|+|.
T Consensus 473 ~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 552 (570)
T 3b43_A 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552 (570)
T ss_dssp EECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEE
T ss_pred EeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEE
Confidence 887664 22345567888888863 4567889998764321110 1123457899999999999999999
Q ss_pred c-CCCCCccEEEEEEEe
Q psy3125 146 V-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~ 161 (163)
| |..|..+..+.|.|.
T Consensus 553 a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 553 IKNEAGTQECFATLSVL 569 (570)
T ss_dssp EECSSCEEEEEEEECCB
T ss_pred EEECCcEEEEEEEEEEe
Confidence 9 999999999999885
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=127.22 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=98.2
Q ss_pred CceE---EecCC-CcEEEEEecCCeeE----Eecce-Ee---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-
Q psy3125 1 MACT---VMGLG-RPVSWMRKRDLHIL----TTNIY-TY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN- 67 (163)
Q Consensus 1 l~C~---~~~~~-~~v~W~k~~~~~~~----~~~~~-~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~- 67 (163)
|+|. +.+.| +.|.|+|....... ..... .. ...+++.+.. ..+.++|.|.+++.+|+|.|+|++.
T Consensus 13 L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n 90 (203)
T 4fa8_A 13 LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANISHDGNYLCRMKL 90 (203)
T ss_dssp EEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEE--cCCEEEEEEccCCHHHCeEEEEEEEc
Confidence 6784 56777 99999985332111 11111 11 1234555544 3468899999999999999999994
Q ss_pred CCCCeeEEEEEEEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEe--------cCCCCceEEEEe
Q psy3125 68 TEPKMNMAIMLNVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVI--------HPQNSDEWNMKI 131 (163)
Q Consensus 68 ~~~~~~~~~~l~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~i 131 (163)
..+.....+.|.|..++ ....+..|..+.+.|.. .+.+.+.|+++++..... ...++.-..|.|
T Consensus 91 ~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i 170 (203)
T 4fa8_A 91 GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVD 170 (203)
T ss_dssp TTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEE
T ss_pred CCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEE
Confidence 45566677788887653 22235567888999963 456788998765433211 112223344677
Q ss_pred cccCcCCCeeEEEEc-CCCCCccE
Q psy3125 132 DYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
.+++.+|+|.|+|.| |..|.+..
T Consensus 171 ~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 171 LSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp EEECSSCCCCEEEEEESSSCEEEE
T ss_pred CCCCHHHCEEEEEEEEcCCCEEEE
Confidence 899999999999999 88887765
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=125.58 Aligned_cols=150 Identities=17% Similarity=0.268 Sum_probs=105.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+... ..+++.+.. ..+..+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 25 l~C~~~~~p~~~v~W~~--~~~~~~~~-----~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l 95 (194)
T 2a38_A 25 FEAHISGFPVPEVSWFR--DGQVISTS-----TLPGVQISF--SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95 (194)
T ss_dssp EEEEEEEESCCEEEEEE--SSSBCCTT-----TSTTCEEEE--ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEE--CCEEcccc-----cCCceEEEe--CCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEE
Confidence 679999988 9999998 32222111 123444443 2347789999999999999999994 44445556667
Q ss_pred EEEcC---------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCee
Q psy3125 79 NVDDR---------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~---------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|... +....+..|..+.+.|.. .+.+.+.|++++..+ .+.. ......|.|.+++.+|+|.
T Consensus 96 ~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~ 173 (194)
T 2a38_A 96 LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ--EGDLYSLLIAEAYPEDSGT 173 (194)
T ss_dssp EEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE--ETTEEEEEEEEECGGGCEE
T ss_pred EEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEE--cCCEEEEEECCCChhcCeE
Confidence 77632 233456678888899863 344568898876532 2221 1234579999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEe
Q psy3125 142 YECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
|+|.| |..|..+..+.|.|+
T Consensus 174 Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 174 YSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEeCCCceEEEEEEEEC
Confidence 99999 988999999999885
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=140.24 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=106.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+|.+...+. ...+ .. ..+.+|.|.+++.+|+|.|+|.+ |..+.......|
T Consensus 225 l~C~~~g~P~p~i~W~k~~~~~~~--------~~~~--~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 290 (384)
T 3kld_A 225 LECFALGNPVPTILWRRADGKPIA--------RKAR--RH----KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290 (384)
T ss_dssp EEEEEEEESCCEEEEEETTCCCCC--------TTCE--EC----TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeecCCCcEEEEeCCCcccc--------ccce--ec----CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 679999999 99999984332211 1111 11 12457999999999999999999 555566666677
Q ss_pred EEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+............|.|.++..+|+|.|+|.| |..
T Consensus 291 ~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 370 (384)
T 3kld_A 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370 (384)
T ss_dssp EEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCC
Confidence 77654 234567778889999964 455788999887543211110011236999999999999999999 999
Q ss_pred CCccEEEEEEEec
Q psy3125 150 PKMNMAIMLNVDG 162 (163)
Q Consensus 150 ~~~~~~~~L~V~~ 162 (163)
|....++.|.|..
T Consensus 371 G~~~~~a~L~V~~ 383 (384)
T 3kld_A 371 GVIFSSAELSVIA 383 (384)
T ss_dssp EEEEEEEEEEEC-
T ss_pred ceEEeceEEEEec
Confidence 9999999999975
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=123.68 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeE--EecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--Cee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHIL--TTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~--~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~ 73 (163)
|.|.+.+.| +.|.|+|.+..... ...... .....|+.+.. .+|.|.+++.+|+|.|+|.+.+ .+ ..+
T Consensus 21 L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~ 94 (212)
T 1f97_A 21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS------SGITFSSVTRKDNGEYTCMVSEEGGQNYGE 94 (212)
T ss_dssp EECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET------TEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred EEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec------eeEEEcccCcccCeEEEEEEEccCCCcccE
Confidence 689999988 99999985443211 111111 12345666553 5799999999999999999954 22 446
Q ss_pred EEEEEEEEcCCCce------EeeCCCeEEEecC-C--CCceeEEEEeCCC-eEEEecC-----------CCCceEEEEec
Q psy3125 74 MAIMLNVDDRGRGA------RLSAGPLLNFAFP-D--LLTTNIYTYTGDA-RFSVIHP-----------QNSDEWNMKID 132 (163)
Q Consensus 74 ~~~~l~V~~~~~~~------~v~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~L~i~ 132 (163)
..+.|.|..++... .+..|..+.+.|. . .+.+.+.|++++. .+..... .......|.|.
T Consensus 95 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~ 174 (212)
T 1f97_A 95 VSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174 (212)
T ss_dssp EEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEES
T ss_pred EEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEE
Confidence 77788888775332 4567888999997 2 3456788998876 4432211 01224569999
Q ss_pred ccCcCCCeeEEEEc-CCCCCc--cEEEEEEEec
Q psy3125 133 YAQKRDAGIYECQV-NTEPKM--NMAIMLNVDG 162 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a-~~~~~~--~~~~~L~V~~ 162 (163)
+++.+|+|.|+|.| |..|.. +..+.|.|.+
T Consensus 175 ~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 175 PVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp SCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 99999999999999 888877 7778888764
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=125.13 Aligned_cols=148 Identities=14% Similarity=0.206 Sum_probs=101.9
Q ss_pred CceEEec--CC-CcEEEEEecCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCe--
Q psy3125 1 MACTVMG--LG-RPVSWMRKRDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKM-- 72 (163)
Q Consensus 1 l~C~~~~--~~-~~v~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~-- 72 (163)
|.|.... .+ +.|.|+|. +..+..+ +......++|+.+.. +.+|.|.+++.+|+|.|+|++. ..+..
T Consensus 16 L~c~~~~~~~~~~~i~W~k~-~~~i~~~~~~~~~~~~~~r~~~~~-----~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~ 89 (176)
T 1hng_A 16 LNIPNFQMTDDIDEVRWERG-STLVAEFKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89 (176)
T ss_dssp ECCTTCCCCTTEEEEEEEET-TEEEEEEETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred EcCCCCCcccccccEEEEeC-CceeEEEcCCCeecCCCCeEEECC-----CCcEEEcccccccCEEEEEEEEeCCCCEEE
Confidence 4673322 44 78999983 2222211 122234567888753 3349999999999999999994 44443
Q ss_pred eEEEEEEEEcCCCceEeeC-CCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 73 NMAIMLNVDDRGRGARLSA-GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 73 ~~~~~l~V~~~~~~~~v~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
...+.|.|..+...+.+.. +..+.+.|.. .+.+.+.|++++..+..... +.|..++.+|+|.|+|.| |.
T Consensus 90 ~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-------~~i~~~~~~d~G~Y~C~a~N~ 162 (176)
T 1hng_A 90 NKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------KTMSYQWTNLRAPFKCKAVNR 162 (176)
T ss_dssp EEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-------SEEEEECSCCSSCEEEEEEET
T ss_pred EEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-------EEEEEEEccCCeEEEEEEEec
Confidence 6677888887654444433 3357888853 44578899998876654331 567788999999999999 98
Q ss_pred CCCccEEEEEEEe
Q psy3125 149 EPKMNMAIMLNVD 161 (163)
Q Consensus 149 ~~~~~~~~~L~V~ 161 (163)
.|..+..+.|.|.
T Consensus 163 ~g~~~~~~~l~~~ 175 (176)
T 1hng_A 163 VSQESEMEVVNCP 175 (176)
T ss_dssp TEEEEEEECCCCC
T ss_pred CCCceecccccCC
Confidence 8988888877664
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=123.57 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=103.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEccc-CcCCCeeEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYA-QKRDAGIYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+. ..++...........+|.|.++ +.+|+|.|+|.+. ..+.....+.
T Consensus 26 L~C~~~g~p~~~v~W~k--~~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~ 95 (212)
T 2yd6_A 26 FICQATGDPRPKIVWNK--KGKKVS--------NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR 95 (212)
T ss_dssp EEEEEEEESCCEEEEEE--TTEECC--------CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeeCCCCEEEEEE--CCcCCC--------CCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEE
Confidence 679999999 9999998 332221 2333333222234678999999 5999999999994 4445566777
Q ss_pred EEEEcC-------------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC-------CCCceEEEEecccC
Q psy3125 78 LNVDDR-------------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP-------QNSDEWNMKIDYAQ 135 (163)
Q Consensus 78 l~V~~~-------------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~i~~v~ 135 (163)
|.|... +....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++
T Consensus 96 l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~ 175 (212)
T 2yd6_A 96 LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSE 175 (212)
T ss_dssp EEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCC
T ss_pred EEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCC
Confidence 888643 223356668888898863 45567899988654332110 01235779999999
Q ss_pred cCCCeeEEEEc-CCCCCc-cEEEEEEEec
Q psy3125 136 KRDAGIYECQV-NTEPKM-NMAIMLNVDG 162 (163)
Q Consensus 136 ~~D~G~Y~C~a-~~~~~~-~~~~~L~V~~ 162 (163)
.+|+|.|+|.| |..|.. +..+.|.|..
T Consensus 176 ~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 176 ESDQGKYECVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cccCEEEEEEEECCCCccccccccEEEEe
Confidence 99999999999 887755 4567777653
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=137.93 Aligned_cols=149 Identities=13% Similarity=0.209 Sum_probs=111.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....++.+... .....|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 311 l~C~~~g~P~p~v~W~k--~~~~l-------~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 379 (570)
T 3b43_A 311 YECKIGGSPEIKVLWYK--DETEI-------QESSKFRMSFV--ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379 (570)
T ss_dssp EEEEEESSSSCEEEEEE--TTEEC-------CCSSSEEEEEE--TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEE
T ss_pred EEEEEeeCCCCEEEEeE--CCEEC-------CCCCcEEEEEE--CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 579999999 9999998 33222 23445555432 24678999999999999999999 556667778889
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|
T Consensus 380 ~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C 457 (570)
T 3b43_A 380 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS--ENFLTSIHILNVDSADIGEYQC 457 (570)
T ss_dssp CEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEE--ETTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEE--cCCEEEEEECCCChhhCEEEEE
Confidence 888663 33456678889999963 45678899987643 22221 1224579999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+..+.|.|..
T Consensus 458 ~A~N~~G~~~~~~~l~v~~ 476 (570)
T 3b43_A 458 KASNDVGSDTCVGSITLKA 476 (570)
T ss_dssp EEECSSCEEEEEEEEEECC
T ss_pred EEEECCCeEEEEEEEEecc
Confidence 99 9999999888888864
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=120.01 Aligned_cols=147 Identities=12% Similarity=0.281 Sum_probs=102.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C-CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P-KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~-~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+. ...++.+.........+|.|.+++.+|+|.|+|.+.+. + ..+..+.
T Consensus 22 l~C~~~~~p~~~v~W~k--~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 92 (182)
T 1rhf_A 22 LNCSVEGMEEPDIQWVK--DGAVVQ-------NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 92 (182)
T ss_dssp EEEEEESCSSCCEEEEE--TTEECC-------SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEE
T ss_pred EEEEEeCCCCCeEEEEE--CCeecC-------CCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEE
Confidence 679999988 9999998 333222 22344333322222578999999999999999999553 2 2446677
Q ss_pred EEEEcCC------CceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDRG------RGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~~------~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|..++ ....+..|..+.+.|.. .+.+ .+.|++++..+.. .......|.|.++ +|+|.|+|.| |
T Consensus 93 l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~---~~~~~~~L~i~~~--~d~G~Y~C~a~N 167 (182)
T 1rhf_A 93 LTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG---PAPSPSVLNVTGV--TQSTMFSCEAHN 167 (182)
T ss_dssp EEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC---SEESSEEEEECCC--SSCEEEEEEEEE
T ss_pred EEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCC---CCCCceEEEEecc--ccCeEEEEEEEC
Confidence 8877553 33456778888999963 3445 7889987764321 1124667999998 5999999999 8
Q ss_pred CCCCc-cEEEEEEEe
Q psy3125 148 TEPKM-NMAIMLNVD 161 (163)
Q Consensus 148 ~~~~~-~~~~~L~V~ 161 (163)
..|.. +..+.|.|+
T Consensus 168 ~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 168 LKGLASSRTATVHLQ 182 (182)
T ss_dssp TTEEEECCCEEEEEC
T ss_pred CCCCcccceEEEEeC
Confidence 87776 458888875
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-19 Score=135.59 Aligned_cols=163 Identities=13% Similarity=0.202 Sum_probs=114.9
Q ss_pred CceEEecCC-CcE----EEEEe-cCC--eeEEecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC
Q psy3125 1 MACTVMGLG-RPV----SWMRK-RDL--HILTTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71 (163)
Q Consensus 1 l~C~~~~~~-~~v----~W~k~-~~~--~~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~ 71 (163)
|.|.+.+.| +.+ .|+|. ++. .+..... ......+|+.+......+.++|.|.+++.+|+|.|+|.++..+.
T Consensus 351 l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~g~ 430 (585)
T 2ocw_A 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL 430 (585)
T ss_pred EEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCCCc
Confidence 689999999 776 78873 333 3333222 22334678887754334567799999999999999999966666
Q ss_pred eeEEEEEEEEcCC------CceEeeCCCeEEEecCC------CCceeEEEEeCCCeEEEec-----------CCCCceEE
Q psy3125 72 MNMAIMLNVDDRG------RGARLSAGPLLNFAFPD------LLTTNIYTYTGDARFSVIH-----------PQNSDEWN 128 (163)
Q Consensus 72 ~~~~~~l~V~~~~------~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 128 (163)
....+.|.|...+ ....+..|..+.+.|.. .+.+.+.|++++..+.... ........
T Consensus 431 ~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (585)
T 2ocw_A 431 WRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVS 510 (585)
T ss_pred cceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEE
Confidence 6777888887642 33456778889999954 2445778998876543221 11233468
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCcc-EEEEEEEecC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMN-MAIMLNVDGK 163 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~-~~~~L~V~~~ 163 (163)
|.|.+++.+|+|.|+|.| |..|... ..+.|.|.++
T Consensus 511 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 511 LTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547 (585)
T ss_pred EEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence 999999999999999999 8777554 4489998763
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=122.96 Aligned_cols=153 Identities=20% Similarity=0.319 Sum_probs=105.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+.... ....+.... ...+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 39 L~C~~~~~p~~~v~W~~--~~~~~~~~~----~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l 108 (231)
T 3ojm_B 39 FRCPAGGNPMPTMRWLK--NGKEFKQEH----RIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108 (231)
T ss_dssp EECCEEEESCCEEEEEE--TTEECCGGG----STTCCEEEG----GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEecccCCCCeEEEEE--CCccccccc----cccceeeec----CcceEEEecCCcccCEEEEEEEecccCcccccEEE
Confidence 579999998 8999998 333221110 011112221 35679999999999999999994 44555667778
Q ss_pred EEEcCC-----------CceEeeCCCeEEEecC--CCCceeEEEEe----CCCeE--------EEe---cCCCCceEEEE
Q psy3125 79 NVDDRG-----------RGARLSAGPLLNFAFP--DLLTTNIYTYT----GDARF--------SVI---HPQNSDEWNMK 130 (163)
Q Consensus 79 ~V~~~~-----------~~~~v~~~~~~~~~~~--~~~~~~~~~~~----~~~~~--------~~~---~~~~~~~~~L~ 130 (163)
.|...+ ....+..|..+.+.|. ..+.+.+.|++ ++..+ ... .........|.
T Consensus 109 ~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 188 (231)
T 3ojm_B 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188 (231)
T ss_dssp EEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEE
T ss_pred EEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEE
Confidence 887532 2345667888999996 34556888987 33321 111 11122345699
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
|.+++.+|+|.|+|.| |..|..+..+.|.|..+
T Consensus 189 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 222 (231)
T 3ojm_B 189 LFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222 (231)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EecCCHHHCeEEEEEEEeccceEeeEEEEEEecC
Confidence 9999999999999999 88899999999999764
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-19 Score=123.68 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=95.6
Q ss_pred CceEEecCC-CcEEEEEecCC---eeE-EecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HIL-TTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~-~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~ 72 (163)
|.|.+.+.+ +.|.|+|.+.. ..+ ...... ....+||.+.. ..+.++|.|.+++.+|+|.|+|++.+... .
T Consensus 24 L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~ 101 (250)
T 3esu_F 24 ISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG--SGTDYSLTISNLEQEDIGTYFCQQGNTLPWTF 101 (250)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC--CCCEEEEEEccCChhhCEEEEEEEeeCCCceE
Confidence 689999999 99999995422 111 111111 12356887654 34678999999999999999999954321 2
Q ss_pred eEEEEEEEEcC-------------------------CCceEeeCCCeEEEecCCC--C--ceeEEEEeC--CC-------
Q psy3125 73 NMAIMLNVDDR-------------------------GRGARLSAGPLLNFAFPDL--L--TTNIYTYTG--DA------- 114 (163)
Q Consensus 73 ~~~~~l~V~~~-------------------------~~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~--~~------- 114 (163)
.....|.|..+ +....+..|..+.+.|... + ...+.|++. +.
T Consensus 102 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~ 181 (250)
T 3esu_F 102 GGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGR 181 (250)
T ss_dssp CCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEE
T ss_pred CCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEE
Confidence 23344555431 2334567788999999742 2 567889876 22
Q ss_pred ----------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 115 ----------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 115 ----------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|+.+.........+|.|.+++.+|+|.|+|.| +
T Consensus 182 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 182 IYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 22222111233557999999999999999999 5
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-19 Score=130.66 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=112.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+++..+..+. ...++|+.+.. .....+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 20 l~C~~~g~p~p~v~W~~~~~g~~~~~~~--~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 95 (389)
T 2jll_A 20 LVCDAEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKG--QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95 (389)
T ss_dssp EEEEEECSSCCEEEEEETTTTEEECC----CCSSSSEEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEeecccCCeEEEEeCCCCceeccCc--CCCCCeEEEec--cCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEE
Confidence 689999999 999999843244443211 12367888765 245789999999999999999999 445666777888
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeE--------EEecCCCCceEEEEecccCcCCCeeE
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARF--------SVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
.|..++ ....+..|..+.+.|.. .+...+.|++++..+ .+.. ......|.|.+++.+|+|.|
T Consensus 96 ~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y 173 (389)
T 2jll_A 96 DIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--TGRKMILEIAPTSDNDFGRY 173 (389)
T ss_dssp EEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE--CSSCEEEEECCCSTTSSEEE
T ss_pred EEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec--cCCEEEEEECCCChhhCEEE
Confidence 887542 12245678889999963 345678898876432 2211 12356799999999999999
Q ss_pred EEEc-CCCCCccEEEEEEEe
Q psy3125 143 ECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 143 ~C~a-~~~~~~~~~~~L~V~ 161 (163)
+|.| |..|..+..+.|.|.
T Consensus 174 ~C~a~N~~G~~~~~~~l~v~ 193 (389)
T 2jll_A 174 NCTATNHIGTRFQEYILALA 193 (389)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEEEec
Confidence 9999 888888888777764
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=119.39 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=101.1
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~ 77 (163)
|.|.+.+.+..+.|+| ++..+... ..+. .....+.+|.|.+++.+|+|.|+|.+.+.. ..+..+.
T Consensus 23 L~C~~~~~~~~~~w~k--~g~~~~~~------~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~ 90 (188)
T 1oll_A 23 ICCQGNYGAVEYQLHF--EGSLFAVD------RPKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLD 90 (188)
T ss_dssp EEEECCTTCCEEEEEE--TTEEEEEE------CCSS----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEE
T ss_pred EEEecCCCCCEEEEEE--CCCccccc------cccc----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceE
Confidence 6799876558899998 33222210 0000 012357789999999999999999995421 2345667
Q ss_pred EEEEcCC--------CceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDRG--------RGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|.... +...+..|..+.+.|... ......|++++..+............|.|.+++.+|+|.|+|.| +
T Consensus 91 l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 170 (188)
T 1oll_A 91 LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 170 (188)
T ss_dssp EEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEE
T ss_pred EEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEc
Confidence 7776421 123467788999999753 33467888877654322112244677999999999999999999 5
Q ss_pred CC---CCccEEEEEEEec
Q psy3125 148 TE---PKMNMAIMLNVDG 162 (163)
Q Consensus 148 ~~---~~~~~~~~L~V~~ 162 (163)
.. ...+..+.|.|.|
T Consensus 171 ~~~~~s~~S~~~~l~V~g 188 (188)
T 1oll_A 171 NNHAWSFPSEPVKLLVTG 188 (188)
T ss_dssp ETTEECCCCCCEEEEEEC
T ss_pred CCCcCCCCCCcEEEEecC
Confidence 43 3567889999976
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=122.88 Aligned_cols=159 Identities=16% Similarity=0.339 Sum_probs=103.1
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Eecc------eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TTNI------YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~~~------~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.| +.|.|+|.+... .+ .... ......+|+.+..+...+.++|.|.+++.+|+|.|+|.+.
T Consensus 22 L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 101 (247)
T 2ghw_B 22 LSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARD 101 (247)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeee
Confidence 689999886 789999854321 11 1100 0011246888876544568899999999999999999995
Q ss_pred CC-C--CeeEEEEEEEEcC---------------------CCceEeeCCCeEEEecCC--CCceeEEEEe--CCCe----
Q psy3125 68 TE-P--KMNMAIMLNVDDR---------------------GRGARLSAGPLLNFAFPD--LLTTNIYTYT--GDAR---- 115 (163)
Q Consensus 68 ~~-~--~~~~~~~l~V~~~---------------------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~--~~~~---- 115 (163)
+. . .....+.|.|..+ +....+..|..+.+.|.. .+...+.|++ ++..
T Consensus 102 n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~ 181 (247)
T 2ghw_B 102 RSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPL 181 (247)
T ss_dssp ETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEE
T ss_pred ccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEE
Confidence 53 1 1223446777643 122346678889999963 3345789987 3332
Q ss_pred --------------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEEe
Q psy3125 116 --------------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNVD 161 (163)
Q Consensus 116 --------------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V~ 161 (163)
+.+. .......|.|.+++.+|+|.|+|.| +.. ........|.|.
T Consensus 182 ~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 182 IYDASTRATGIPDRFSGS--GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EETTTEECTTCCTTEEEE--CSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEeccCCCccCCCEEEe--cCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 2221 1234567999999999999999999 542 233345566665
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=124.88 Aligned_cols=152 Identities=18% Similarity=0.345 Sum_probs=102.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+.... ......... ...+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 35 L~C~~~~~p~~~v~W~~--~~~~~~~~~----~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l 104 (241)
T 3grw_A 35 FRCPAAGNPTPSISWLK--NGREFRGEH----RIGGIKLRH----QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104 (241)
T ss_dssp EECCEECSSCCEEEEEE--TTEECCGGG----STTCCEEEG----GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEE--CCcccCCCC----cccceeeec----cceEEEEEeCCcccCEEEEEEEeecCCceEEEEEE
Confidence 679999998 9999998 332221111 011112221 35579999999999999999994 44555667778
Q ss_pred EEEcCC-----------CceEeeCCCeEEEecC--CCCceeEEEEe----CCCeEE--------Ee----cCCCCceEEE
Q psy3125 79 NVDDRG-----------RGARLSAGPLLNFAFP--DLLTTNIYTYT----GDARFS--------VI----HPQNSDEWNM 129 (163)
Q Consensus 79 ~V~~~~-----------~~~~v~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~--------~~----~~~~~~~~~L 129 (163)
.|.... ....+..|..+.+.|. ..+.+.+.|++ ++..+. .. .........|
T Consensus 105 ~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L 184 (241)
T 3grw_A 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184 (241)
T ss_dssp EEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEE
T ss_pred EEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEE
Confidence 877531 2234556788889886 34456889988 332111 00 0111235679
Q ss_pred EecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 130 KIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 130 ~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.|.+++.+|+|.|+|.| |..|..+..+.|.|.+
T Consensus 185 ~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 218 (241)
T 3grw_A 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218 (241)
T ss_dssp EECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred EECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence 99999999999999999 9899999999999875
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-19 Score=119.62 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=99.4
Q ss_pred CceEEecCCCcEEEEEe-cCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--eeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~~~~~~ 77 (163)
|.|.+.+.++.|.|+|. +++.++. ...++.... ...|.|.+++.+|+|.|+|.+.+... .+..+.
T Consensus 29 L~C~~~~p~~~v~w~~~~~~g~~~~-------~~~~~~~~~-----~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~ 96 (213)
T 2x1w_L 29 IPCLGSISNLNVSLCARYPEKRFVP-------DGNRISWDS-----KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 96 (213)
T ss_dssp ECCCBSSTTCCEEEEEETTTEEECC-------CSSSCEEET-----TTEEEEEGGGTTTCSEEEEEEC----CEECCCEE
T ss_pred EeeccCCCCcEEEEEhhcCCCcccc-------CCCcccccC-----CccEEEccCChhcCceEEEEEEECCeeEEEEEEE
Confidence 68999873399999984 1232221 122333322 33599999999999999999954322 222355
Q ss_pred EEEEc---------CCCceEeeCCCeEEEecCCC----CceeEEEEeCCCeE---EE---ecC--C----CCceEEEEec
Q psy3125 78 LNVDD---------RGRGARLSAGPLLNFAFPDL----LTTNIYTYTGDARF---SV---IHP--Q----NSDEWNMKID 132 (163)
Q Consensus 78 l~V~~---------~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~---~~~--~----~~~~~~L~i~ 132 (163)
|.|.. ++....+..|..+.+.|... ....+.|++++... .. ... . ......|.|.
T Consensus 97 l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 176 (213)
T 2x1w_L 97 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176 (213)
T ss_dssp EEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEES
T ss_pred EEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEEC
Confidence 55532 12233677889999999743 22368898876631 11 111 1 1224579999
Q ss_pred ccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 133 YAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
+++.+|+|.|+|.| |..|..+..+.|.|..+
T Consensus 177 ~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~ 208 (213)
T 2x1w_L 177 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208 (213)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-
T ss_pred CCCcccCEEEEEEEecCCCcEEEEEEEEEecc
Confidence 99999999999999 98999999999999764
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=118.60 Aligned_cols=150 Identities=13% Similarity=0.230 Sum_probs=102.3
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCC-----eEEEEEcccCcCCCeeEEEEeeCCC-C-
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSD-----EWNMKIDYAQKRDAGIYECQVNTEP-K- 71 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~~~~~~-~- 71 (163)
|.|.+. +.| +.|.|+| ++..+.... ..++.+....+.. ..+|.|.+++.+|+|.|+|.+.+.. .
T Consensus 22 l~C~~~~~~p~~~v~W~~--~g~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 94 (195)
T 2c5d_C 22 LRCQLQVQGEPPEVHWLR--DGQILELAD-----STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94 (195)
T ss_dssp EEEEEEEESSCCCCEEEE--TTEECCSCE-----EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred EecccccCCCCcEEEEEE--CCEEcccCC-----CCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCce
Confidence 679999 888 9999998 333332111 1234444322111 4689999999999999999995432 2
Q ss_pred eeEEEEEEEEcCC------CceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 72 MNMAIMLNVDDRG------RGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 72 ~~~~~~l~V~~~~------~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
.+..+.|.|..++ ....+..|..+.+.|.. .+.+ .+.|++++..+.... .......|.|.+++ |+|.|
T Consensus 95 ~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-~~~~~~~L~i~~~~--d~G~Y 171 (195)
T 2c5d_C 95 VSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-GHGPQRSLHVPGLN--KTSSF 171 (195)
T ss_dssp ECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSST-TSSCCEEEEECCCS--SCEEE
T ss_pred ecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCC-CcCCCCeEEEcccc--cCceE
Confidence 2334677776543 33456678889999963 4455 789998876443221 11356779999998 89999
Q ss_pred EEEc-CCCCCcc-EEEEEEE
Q psy3125 143 ECQV-NTEPKMN-MAIMLNV 160 (163)
Q Consensus 143 ~C~a-~~~~~~~-~~~~L~V 160 (163)
+|.| |..|... ..+.|.|
T Consensus 172 ~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 172 SCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEETTEEEECCCEEEEE
T ss_pred EEEEEcCCCceEEEEEEEEE
Confidence 9999 8888774 7888887
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-19 Score=125.85 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=108.1
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+. +.| +.+.|+| ++.. +....|+.+.........+|.|.+++.+|+|.|+|.+.+ +.......+
T Consensus 127 l~C~~~~~~p~~~v~W~~--~~~~-------i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~ 196 (312)
T 2y23_A 127 FWMQAEKLSGNAKVNYIF--NEKE-------IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHSTV 196 (312)
T ss_dssp EEEEESCCCSSCEEEEEE--TTEE-------ECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEES-SSCEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEE--CCEE-------CeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEe-CCceEEEEE
Confidence 579999 788 9999998 3322 234467776654335578899999999999999999954 223333333
Q ss_pred EEE---------------------cCC-----CceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecC--CCCceE
Q psy3125 79 NVD---------------------DRG-----RGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHP--QNSDEW 127 (163)
Q Consensus 79 ~V~---------------------~~~-----~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 127 (163)
.+. .++ ....+..|..+.+.|.. .+.+ .+.|++++..+..... ......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~ 276 (312)
T 2y23_A 197 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 276 (312)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEE
T ss_pred EEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEE
Confidence 331 011 02367788999999963 3344 7899998776653321 113356
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.|.|.+++.+|+|.|+|.| |..|..+..+.|.|++
T Consensus 277 ~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~~ 312 (312)
T 2y23_A 277 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312 (312)
T ss_dssp EEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSCC
T ss_pred EEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEecC
Confidence 8999999999999999999 9999999999998864
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=121.97 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=102.8
Q ss_pred CceEEecC--C-CcEEEEEecCCe----eEEec---c---eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLH----ILTTN---I---YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~----~~~~~---~---~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + +.|.|+|..... ++... . ......+|+.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 26 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 105 (256)
T 3juy_B 26 VSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARV 105 (256)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEE
Confidence 68999984 4 899999854221 11111 0 0111246898886545668899999999999999999995
Q ss_pred CC-------------CCeeEEEEEEEEcC---------------------CCceEeeCCCeEEEecCCC--Cc-eeEEEE
Q psy3125 68 TE-------------PKMNMAIMLNVDDR---------------------GRGARLSAGPLLNFAFPDL--LT-TNIYTY 110 (163)
Q Consensus 68 ~~-------------~~~~~~~~l~V~~~---------------------~~~~~v~~~~~~~~~~~~~--~~-~~~~~~ 110 (163)
+. ......+.|.|... +....+..|..+.+.|... .. ..+.|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~ 185 (256)
T 3juy_B 106 GEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWY 185 (256)
T ss_dssp CCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEE
T ss_pred eccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEE
Confidence 43 22334556777653 2233566788899999632 22 678898
Q ss_pred eC--CC------------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEe
Q psy3125 111 TG--DA------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVD 161 (163)
Q Consensus 111 ~~--~~------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~ 161 (163)
+. +. |+.+.. ......|.|.+++.+|+|.|+|.| +... .....+.|.|+
T Consensus 186 k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V~ 256 (256)
T 3juy_B 186 QHKPGQAPRLVIHGVSNRASGISDRFSGSG--SGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERK 256 (256)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEecCccCCccCCcEEEEc--cCCEEEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEEC
Confidence 62 11 222111 123556999999999999999999 5332 23445566653
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=128.86 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=105.9
Q ss_pred ceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 2 ACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 2 ~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
.|.+.+ .| +.|.|+| ++..+ ....++.+.. ..+..+|.|.+++.+|+|.|+|.+.+ .+.....+.|
T Consensus 128 ~c~~~~~~p~~~i~W~~--~~~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 196 (317)
T 2y25_A 128 YSFVTYYVEDLKVNWSH--NGSAI-------RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196 (317)
T ss_dssp EEEBSSCCSSCEEEEEE--SSSBC-------CCCSSEEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEeccCCCCcEEEEEE--CCEEC-------CCCCCeEEec--cCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEE
Confidence 466665 46 9999998 22222 2345666654 33567899999999999999999954 4444455555
Q ss_pred EEEc---------------------------CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEE------EecCCC
Q psy3125 79 NVDD---------------------------RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS------VIHPQN 123 (163)
Q Consensus 79 ~V~~---------------------------~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~ 123 (163)
.|.. .+....+..|..+.+.|.. .+.+.+.|++++..+. +.. ..
T Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~-~~ 275 (317)
T 2y25_A 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF-EA 275 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECC-BT
T ss_pred eeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEE-cC
Confidence 4321 1233567788888999863 4556799998876442 221 11
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.....|.|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 276 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 276 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp TTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 34568999999999999999999 9999999999999975
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=120.89 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=99.7
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ +. |.|+| ++..+. ....+|.|.+++.+|+|.|+|.+.+ ...+..+.|
T Consensus 27 L~C~~~~~p~~~~v~W~k--~g~~l~-------------------~~~~~L~i~~v~~~D~G~Y~C~a~n-~~~s~~~~l 84 (204)
T 3sgj_C 27 LKCQGAYSPEDQSTQWFH--NESLIS-------------------SQASSYFIDAATVDDSGEYRCQTQL-STLSDPVQL 84 (204)
T ss_dssp EEEECCSSSSCCCEEEEE--TTEEES-------------------CCSSEEEESSCCGGGCEEEEEEETT-SBCCCCEEE
T ss_pred EEEcCCCCCCCcEEEEEE--CCEEcc-------------------cCccEEEEecccccCCEEEEEEeCC-CcccccEEE
Confidence 679999988 54 99998 332221 1125699999999999999999954 344556677
Q ss_pred EEEcCC-----CceEeeCCCeEEEecCCC---CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C-C
Q psy3125 79 NVDDRG-----RGARLSAGPLLNFAFPDL---LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N-T 148 (163)
Q Consensus 79 ~V~~~~-----~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~ 148 (163)
.|..++ +...+..|..+.+.|... +...+.|++++..+..... ...|.|.+++.+|+|.|+|.| | .
T Consensus 85 ~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~ 160 (204)
T 3sgj_C 85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----NSDFYIPKATLKDSGSYFCRGLVGS 160 (204)
T ss_dssp EEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE----CCCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccC----CceEEECcCCcccCEEEEEEEEeCC
Confidence 776542 234667888999999652 3467899988876543321 235999999999999999999 6 4
Q ss_pred CCCccEEEEEEEec
Q psy3125 149 EPKMNMAIMLNVDG 162 (163)
Q Consensus 149 ~~~~~~~~~L~V~~ 162 (163)
.+..+..+.|.|.+
T Consensus 161 ~~~~s~~~~l~V~~ 174 (204)
T 3sgj_C 161 KNVSSETVQITITQ 174 (204)
T ss_dssp EEEECCCEEEEEEC
T ss_pred CceecCcEEEEEeC
Confidence 45677788888875
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=119.66 Aligned_cols=160 Identities=17% Similarity=0.278 Sum_probs=104.0
Q ss_pred CceEEecCC---CcEEEEEecCCee---EEec-------ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI---LTTN-------IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~---~~~~-------~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|...... +... .......+|+.+..+...+.++|.|.+++.+|+|.|+|.+.
T Consensus 21 L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 100 (253)
T 3uzq_A 21 LSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRG 100 (253)
T ss_dssp EEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEe
Confidence 689999854 8999999543221 1110 01112247888886555668899999999999999999995
Q ss_pred CCCC--eeEEEEEEEEcC---------------------CCceEeeCCCeEEEecCCC--Cce----eEEEEeCC--C--
Q psy3125 68 TEPK--MNMAIMLNVDDR---------------------GRGARLSAGPLLNFAFPDL--LTT----NIYTYTGD--A-- 114 (163)
Q Consensus 68 ~~~~--~~~~~~l~V~~~---------------------~~~~~v~~~~~~~~~~~~~--~~~----~~~~~~~~--~-- 114 (163)
+... ....+.|.|... +....+..|..+.+.|... +.. .+.|++.. .
T Consensus 101 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~ 180 (253)
T 3uzq_A 101 WEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPP 180 (253)
T ss_dssp SSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCC
T ss_pred eCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCC
Confidence 5322 234556666631 2234567789999999632 233 78898731 1
Q ss_pred ----------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEec
Q psy3125 115 ----------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 115 ----------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~~ 162 (163)
|+.... ......|.|.+++.+|+|.|+|.| +..+ .......|.|.+
T Consensus 181 ~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 181 KLLIYRASNLESGIPARFSGSG--SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp EEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred EEEEEEccccCCccCCceEEeC--CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence 222211 123557999999999999999999 5432 334566677654
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=120.31 Aligned_cols=145 Identities=13% Similarity=0.239 Sum_probs=94.3
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~ 72 (163)
|.|.+.+.+ +.|.|+|.+.. ..+........ ..+||.+.. ..+..+|.|.+++.+|+|.|.|.+.+... .
T Consensus 21 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~ 98 (242)
T 2znx_A 21 LSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQSNSXPYTF 98 (242)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCChHHCEEEEEeEecCCceEE
Confidence 689999998 99999986421 22221111111 256888764 34578999999999999999999955322 2
Q ss_pred eEEEEEEEEcCC-------------------CceEeeCCCeEEEecCCC----CceeEEEEeCC--C-------------
Q psy3125 73 NMAIMLNVDDRG-------------------RGARLSAGPLLNFAFPDL----LTTNIYTYTGD--A------------- 114 (163)
Q Consensus 73 ~~~~~l~V~~~~-------------------~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~--~------------- 114 (163)
...+.|.|..++ ....+..|..+.+.|... ....+.|++.. .
T Consensus 99 ~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~ 178 (242)
T 2znx_A 99 GGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGS 178 (242)
T ss_dssp CCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSC
T ss_pred CCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCc
Confidence 234456665432 123466788899999642 13568888742 2
Q ss_pred ---------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 115 ---------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 115 ---------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|+.+..........|.|.+++.+|+|.|+|.| +
T Consensus 179 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 221 (242)
T 2znx_A 179 TYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD 221 (242)
T ss_dssp EEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred cccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence 22222111234568999999999999999999 5
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=116.20 Aligned_cols=152 Identities=19% Similarity=0.257 Sum_probs=103.5
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~ 76 (163)
|.|.+.+.+ +.+.|+|.++..+. ....|+.+... .....+|.|.+++.+|+|.|+|.+.+. ...+..+
T Consensus 22 l~C~~~~~~~~~~v~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 93 (191)
T 1epf_A 22 FLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV 93 (191)
T ss_dssp EEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEE
T ss_pred EEEECCCCCCCceEEEEeCCCcccc-------CCCCeEEEEEC-CCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEE
Confidence 679999875 89999974433332 13556666542 235788999999999999999999543 3455666
Q ss_pred EEEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEE
Q psy3125 77 MLNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 77 ~l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.|.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.
T Consensus 94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (191)
T 1epf_A 94 NVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173 (191)
T ss_dssp EEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred EEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEE
Confidence 7777654 234456778889999963 455678998876533211100 00122599999999999999999
Q ss_pred c-CCCCCccEEEEEEE
Q psy3125 146 V-NTEPKMNMAIMLNV 160 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V 160 (163)
| |..+.......+.|
T Consensus 174 a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 174 GRILARGEINFKDIQV 189 (191)
T ss_dssp EEEGGGTEEEEEEEEE
T ss_pred EEEecceeEEEEEEEE
Confidence 9 76655555555544
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-19 Score=124.72 Aligned_cols=160 Identities=16% Similarity=0.272 Sum_probs=100.6
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEec-ceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C-e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTN-IYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K-M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~-~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~-~ 72 (163)
|.|.+.+.+ +.|.|+|.+.. ..+... .... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+.. . .
T Consensus 32 L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~ 109 (276)
T 3auv_A 32 ITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPEDFATYYCQQHYTTPPTF 109 (276)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCCC
T ss_pred EEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEccCChhhCEEEEEEEecCCcccc
Confidence 689999998 99999986432 122211 1111 1256888764 3457899999999999999999995432 1 2
Q ss_pred eEEEEEEEEcCC--------------------CceEeeCCCeEEEecCCC--C--ceeEEEEeCC--C------------
Q psy3125 73 NMAIMLNVDDRG--------------------RGARLSAGPLLNFAFPDL--L--TTNIYTYTGD--A------------ 114 (163)
Q Consensus 73 ~~~~~l~V~~~~--------------------~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~--~------------ 114 (163)
...+.|.|..++ ....+..|..+.+.|... + ...+.|++.+ .
T Consensus 110 ~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~ 189 (276)
T 3auv_A 110 GCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAG 189 (276)
T ss_dssp CCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGG
T ss_pred cCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccC
Confidence 333456655431 233556788899999642 2 4678898753 1
Q ss_pred -----------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC---C--CccEEEEEEEec
Q psy3125 115 -----------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE---P--KMNMAIMLNVDG 162 (163)
Q Consensus 115 -----------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~---~--~~~~~~~L~V~~ 162 (163)
|+.+..........|.|.+++.+|+|.|+|.| |.. + .......|.|..
T Consensus 190 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~ 254 (276)
T 3auv_A 190 GYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSS 254 (276)
T ss_dssp CCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred CccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence 22221111123457999999999999999999 652 1 223456676653
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=122.99 Aligned_cols=162 Identities=14% Similarity=0.247 Sum_probs=103.4
Q ss_pred CceEEecCC---CcEEEEEecCC-ee--EEecc-----eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL-HI--LTTNI-----YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~-~~--~~~~~-----~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.. .+ +.... ... ...+|+.+......+..+|.|.+++.+|+|.|+|.+.
T Consensus 20 L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 99 (256)
T 1nqb_A 20 LSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARY 99 (256)
T ss_dssp EEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEe
Confidence 689999874 79999986432 11 11110 000 1247888876434568899999999999999999995
Q ss_pred CC-C-----CeeEEEEEEEEcC------CCceEeeCCCeEEEecCCC--Cc-----eeEEEEe--CCCeEEEe--c----
Q psy3125 68 TE-P-----KMNMAIMLNVDDR------GRGARLSAGPLLNFAFPDL--LT-----TNIYTYT--GDARFSVI--H---- 120 (163)
Q Consensus 68 ~~-~-----~~~~~~~l~V~~~------~~~~~v~~~~~~~~~~~~~--~~-----~~~~~~~--~~~~~~~~--~---- 120 (163)
+. + .....+.|.|..+ +....+..|..+.+.|... +. ..+.|++ ++...... .
T Consensus 100 n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~ 179 (256)
T 1nqb_A 100 DYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNR 179 (256)
T ss_dssp CTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEE
T ss_pred eccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCC
Confidence 43 2 1223456666543 2334577889999999632 22 3789988 34322110 0
Q ss_pred ----------CCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEec
Q psy3125 121 ----------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 121 ----------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~~ 162 (163)
........|.|.+++.+|+|.|+|.| +... .......|.|..
T Consensus 180 ~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 180 FSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 00123567999999999999999999 5322 233455666653
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=117.45 Aligned_cols=137 Identities=15% Similarity=0.230 Sum_probs=99.1
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ +. +.|+| ++..+. ..+.+|.|.+++.+|+|.|+|.+.+. ..+..+.|
T Consensus 27 L~C~~~~~p~~~~~~W~~--~~~~~~-------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~s~~~~l 84 (175)
T 1fnl_A 27 LKCQGAYSPEDNSTQWFH--NESLIS-------------------SQASSYFIDAATVNDSGEYRCQTNLS-TLSDPVQL 84 (175)
T ss_dssp EEEECCCBTTBCCCEEEE--TTEEEE-------------------SSCSEEEESSCCGGGCEEEEEECSSS-CCCCCEEE
T ss_pred EEeeCCCCCCCcceEEEE--CCEEcc-------------------CCceEEEEeCCCcccCEEEEEEeeCC-cccccEEE
Confidence 679999988 44 78998 332221 12457999999999999999999542 33556667
Q ss_pred EEEcC-----CCceEeeCCCeEEEecCCC--C-ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDR-----GRGARLSAGPLLNFAFPDL--L-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~-----~~~~~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..+ .+...+..|..+.+.|... . ...+.|++++..+.... ....|.|.+++.+|+|.|+|.| |..
T Consensus 85 ~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~ 160 (175)
T 1fnl_A 85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH----HNSDFHIPKATLKDSGSYFCRGLVGS 160 (175)
T ss_dssp EEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE----ECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCC----CCCEEEEcccChhhCeEEEEEEEcCC
Confidence 77643 2234566788899999532 2 34889999887664332 1345999999999999999999 644
Q ss_pred -CCccEEEEEEEecC
Q psy3125 150 -PKMNMAIMLNVDGK 163 (163)
Q Consensus 150 -~~~~~~~~L~V~~~ 163 (163)
...+..+.|.|.|+
T Consensus 161 ~~~~s~~~~l~V~~~ 175 (175)
T 1fnl_A 161 KNVSSETVNITITQA 175 (175)
T ss_dssp EEEECCCEEEEEECC
T ss_pred CCccCccEEEEEeCC
Confidence 45778899999875
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-19 Score=122.74 Aligned_cols=149 Identities=13% Similarity=0.277 Sum_probs=99.0
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--- 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--- 70 (163)
|.|.+.+.+ +.|.|+|..... +... +.......+||.+........++|.|.+++.+|+|.|+|.+.+..
T Consensus 23 L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~ 102 (256)
T 3tf7_C 23 LRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGS 102 (256)
T ss_dssp ECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTT
T ss_pred EEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCcc
Confidence 689999999 999999854221 1111 222233467888864445678999999999999999999995432
Q ss_pred --CeeEEEEEEEEc--------------------------CCCceEeeCCCeEEEecCCC-CceeEEEEeCC--C-----
Q psy3125 71 --KMNMAIMLNVDD--------------------------RGRGARLSAGPLLNFAFPDL-LTTNIYTYTGD--A----- 114 (163)
Q Consensus 71 --~~~~~~~l~V~~--------------------------~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~--~----- 114 (163)
.....+.|.|.. .+....+..|..+.+.|... ....+.|++.. .
T Consensus 103 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~ 182 (256)
T 3tf7_C 103 KLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLI 182 (256)
T ss_dssp CEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSCCSEEEEEEECTTSCEEEE
T ss_pred ceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCCceEEEEEEECCCCCeEEE
Confidence 123345666665 12233556788899999632 24578887632 1
Q ss_pred ----------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 115 ----------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 115 ----------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
|+.+.. .......|.|.+++.+|+|.|+|.| |..+
T Consensus 183 ~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 183 YYSYGAGNLQIGDVPDGYKATR-TTQEDFFLTLESASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp EEEESTTCCEECSCCTTCEEEC-CSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred EEEcCCCceecCccCCceEEEe-CCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence 111111 1234557999999999999999999 6544
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=118.03 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=103.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~-~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+. ..+.|+.+... ..+|.|.+++.+|+|.|+|.+.+. +. ....+.
T Consensus 27 l~C~~~~~p~~~i~W~~--~~~~~~------~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 94 (192)
T 2iep_A 27 FMCAVESYPQPEISWTR--NKILIK------LFDTRYSIREN----GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGA 94 (192)
T ss_dssp EECCEEEESCCEEEEEE--TTEECC------TTCTTEEEEGG----GTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEE
T ss_pred EEeeCCCCCCCeEEEEE--CCEEcc------ccCccEEEcCC----ccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEE
Confidence 579999988 9999998 332221 23567776642 347999999999999999999542 32 344555
Q ss_pred EEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|..+ +....+..|..+.+.|.. .+...+.|++++..+...... ......|.|.+++.+|+|.|+|.| |
T Consensus 95 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 174 (192)
T 2iep_A 95 LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174 (192)
T ss_dssp EEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEc
Confidence 665543 334567788889999963 344578898876533211100 001225999999999999999999 8
Q ss_pred CCCCc-cEEEEEEEec
Q psy3125 148 TEPKM-NMAIMLNVDG 162 (163)
Q Consensus 148 ~~~~~-~~~~~L~V~~ 162 (163)
..|.. +..+.|.|..
T Consensus 175 ~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 175 SLGTAYSKLVKLEVEV 190 (192)
T ss_dssp TTEEEECCCEEEEEEC
T ss_pred CCCcEEEEEEEEEEEe
Confidence 87766 5678888864
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-20 Score=124.05 Aligned_cols=127 Identities=13% Similarity=0.227 Sum_probs=87.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcc-cCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDY-AQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+ ++.|.|+| ++..+. . ..+.+|.|.+ ++.+|+|.|+|.+.+ .+..+..+.+
T Consensus 19 L~C~~~~-~~~i~W~k--~g~~l~-------~-----------~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 19 LTCPLDS-DENLKWEK--NGQELP-------Q-----------KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EECSSCC-CTTCEEEE--TTEEEC-------S-----------CCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EEEeCCC-CCceEEEE--CCEECC-------C-----------CCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 5799887 65599998 332221 1 0234699999 999999999999944 3444444444
Q ss_pred EEEcCCCc-------------------------------eEeeCCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceE
Q psy3125 79 NVDDRGRG-------------------------------ARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEW 127 (163)
Q Consensus 79 ~V~~~~~~-------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (163)
.|...... ..+..|..+.+.|.. +.+.+.|++++..+... .....
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-p~p~i~W~k~g~~i~~~---~~~~~ 153 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-TDKTIKWLKDGSIISPL---NATKN 153 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-SCSCEEEEETTEECCCS---SCCSS
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC-CCCeEEEEECCEECccc---CCCcc
Confidence 44322100 122378899999988 67889999987754311 12345
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
.|.|.+++.+|+|.|+|.| |..+..
T Consensus 154 ~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 154 TWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 6999999999999999999 776654
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=121.61 Aligned_cols=160 Identities=13% Similarity=0.245 Sum_probs=103.3
Q ss_pred CceEEecCC---CcEEEEEecCCee---EE-e------cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI---LT-T------NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~---~~-~------~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|...... +. . ........+||.+......+.++|.|.+++.+|+|.|.|.+.
T Consensus 22 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 101 (256)
T 3umt_A 22 ISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARD 101 (256)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEc
Confidence 689999865 8999998643221 11 0 000111347888876444568899999999999999999995
Q ss_pred CC-----CCeeEEEEEEEEcC----------------------CCceEeeCCCeEEEecCC--CCceeEEEEeCC--C--
Q psy3125 68 TE-----PKMNMAIMLNVDDR----------------------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--A-- 114 (163)
Q Consensus 68 ~~-----~~~~~~~~l~V~~~----------------------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--~-- 114 (163)
+. ......+.|.|... +....+..|..+.+.|.. .+...+.|++.. .
T Consensus 102 ~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~ 181 (256)
T 3umt_A 102 DRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTI 181 (256)
T ss_dssp CSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCE
T ss_pred cCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCc
Confidence 43 22334556777641 222456678889999963 233478888731 1
Q ss_pred ----------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEec
Q psy3125 115 ----------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 115 ----------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~~ 162 (163)
|+.... ......|.|.+++.+|+|.|+|.| +... .....+.|.|.+
T Consensus 182 ~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 182 KRLIYATSSLDSGVPKRFSGSR--SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp EEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEEeccccCCccCCCEEEec--CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 122111 123556999999999999999999 5332 234567777764
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=123.02 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=106.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeE--EecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC---CCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHIL--TTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE---PKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~--~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~---~~~~ 73 (163)
|.|.+.+.| +.|.|+|.+..... ...... .....|+.+.. .+|.|.+++.+|+|.|+|.+.+. ...+
T Consensus 24 L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 97 (209)
T 1nbq_A 24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP------TGITFKSVTREDTGTYTCMVSEEGGNSYGE 97 (209)
T ss_dssp EECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET------TEEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred EEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec------cEEEEeeCCHHHCcEEEEEEecCCCCccce
Confidence 679999988 99999985443211 111111 11234555542 57999999999999999999542 2345
Q ss_pred EEEEEEEEcCCCc------eEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC-----------CCCceEEEEecc
Q psy3125 74 MAIMLNVDDRGRG------ARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP-----------QNSDEWNMKIDY 133 (163)
Q Consensus 74 ~~~~l~V~~~~~~------~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~L~i~~ 133 (163)
..+.|.|..++.. ..+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+
T Consensus 98 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 177 (209)
T 1nbq_A 98 VKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177 (209)
T ss_dssp CEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESS
T ss_pred EEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEe
Confidence 6677788766432 346678889999974 34568899988765432211 111345699999
Q ss_pred cCcCCCeeEEEEc-CCCCCc--cEEEEEEEe
Q psy3125 134 AQKRDAGIYECQV-NTEPKM--NMAIMLNVD 161 (163)
Q Consensus 134 v~~~D~G~Y~C~a-~~~~~~--~~~~~L~V~ 161 (163)
++.+|+|.|+|.| |..|.. +..+.|.|.
T Consensus 178 ~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 178 LSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp CCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred ccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 9999999999999 888877 566666664
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=122.46 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=99.4
Q ss_pred CceEEec---CC-CcEEEEEecCCe---eEEecce-----------------E-ecCCCeEEEeccCCCCeEEEEEcccC
Q psy3125 1 MACTVMG---LG-RPVSWMRKRDLH---ILTTNIY-----------------T-YTGDARFSVIHPQNSDEWNMKIDYAQ 55 (163)
Q Consensus 1 l~C~~~~---~~-~~v~W~k~~~~~---~~~~~~~-----------------~-~~~~~r~~~~~~~~~~~~~L~i~~v~ 55 (163)
|.|.+.+ .+ +.|.|+|.+... ++..+.. . ....+|+.+.. .++.+|.|.+++
T Consensus 22 L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~L~I~~v~ 98 (250)
T 2fbo_J 22 LPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN---LAAPTLRLTHVH 98 (250)
T ss_dssp ECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC---TTSCCEEECSCC
T ss_pred EEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc---CCcceEEEeeCC
Confidence 6899997 66 899999854221 1111110 0 11245655543 235679999999
Q ss_pred cCCCeeEEEEeeCCCC------eeEEEEEEEEcC--CCc--------eEeeCCCeEEEecCC--CCceeEEEEeCCCeEE
Q psy3125 56 KRDAGIYECQVNTEPK------MNMAIMLNVDDR--GRG--------ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS 117 (163)
Q Consensus 56 ~~D~G~Y~C~~~~~~~------~~~~~~l~V~~~--~~~--------~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 117 (163)
.+|+|.|+|++.+... ....+.|.|..+ ++. ..+..|..+.+.|.. .+.+.+.|++++..+.
T Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~ 178 (250)
T 2fbo_J 99 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178 (250)
T ss_dssp GGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSS
T ss_pred hhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCccc
Confidence 9999999999954322 134777888764 111 233458889999963 3456888987753221
Q ss_pred E--------------------ecCCCC-----ceEEEEecccCcCCCeeEEEEc-CC---CCCccEEEEEEE
Q psy3125 118 V--------------------IHPQNS-----DEWNMKIDYAQKRDAGIYECQV-NT---EPKMNMAIMLNV 160 (163)
Q Consensus 118 ~--------------------~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a-~~---~~~~~~~~~L~V 160 (163)
. ...... ....|.|.+++.+|+|.|+|.| |. .+....++.|.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 179 NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp CSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred ccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 0 000001 1247999999999999999999 84 445556666654
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=125.41 Aligned_cols=162 Identities=19% Similarity=0.293 Sum_probs=102.5
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEE-ec---ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILT-TN---IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~-~~---~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.| +.|.|+|.+.+ ..+. .. ...+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 99 (257)
T 1f3r_B 20 LTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDL 99 (257)
T ss_dssp EEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEES
T ss_pred EEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcc
Confidence 689999873 89999986321 1211 11 11111 2468888764345688999999999999999999955
Q ss_pred CC--------C--eeEEEEEEEEcCC---------------------CceEeeCCCeEEEecCCC--CceeEEEEe--CC
Q psy3125 69 EP--------K--MNMAIMLNVDDRG---------------------RGARLSAGPLLNFAFPDL--LTTNIYTYT--GD 113 (163)
Q Consensus 69 ~~--------~--~~~~~~l~V~~~~---------------------~~~~v~~~~~~~~~~~~~--~~~~~~~~~--~~ 113 (163)
.. . ....+.|.|..++ ....+..|..+.+.|... +...+.|++ ++
T Consensus 100 ~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g 179 (257)
T 1f3r_B 100 YGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLG 179 (257)
T ss_dssp SSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTT
T ss_pred cccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCC
Confidence 31 1 1234567776532 122356788899999642 335788988 33
Q ss_pred CeEE--EecC--------------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 114 ARFS--VIHP--------------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 114 ~~~~--~~~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.... +... .......|.|.+++.+|+|.|+|.| |........+.|.|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~ 245 (257)
T 1f3r_B 180 EAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKA 245 (257)
T ss_dssp SCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred CCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeC
Confidence 3221 1100 0123457999999999999999999 6532222344565554
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-20 Score=122.68 Aligned_cols=150 Identities=12% Similarity=0.108 Sum_probs=98.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--CeeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~~~~~ 77 (163)
|.|.+.+.++.+.|+|.+.. +. . .+. .........+|.|.+++.+|+|.|+|.+.+ .+ ..+..+.
T Consensus 24 L~C~~~~~~~~~~w~k~g~~--~~-------~-~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 91 (196)
T 3p2t_A 24 IWCQGTLEAREYRLDKEESP--AP-------W-DRQ--NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLE 91 (196)
T ss_dssp EEEECCTTCCEEEEEETTSC--SC-------S-EEE--CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEE
T ss_pred EEeeCCCCCCEEEEEECCCC--Cc-------c-ccc--ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEE
Confidence 67999994499999983221 11 0 000 000113467899999999999999999954 32 3355667
Q ss_pred EEEEcCC--------CceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEE-----ecCCCCceEEEEecccCcCCCeeEE
Q psy3125 78 LNVDDRG--------RGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSV-----IHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 78 l~V~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
|.|.... +...+..|..+.+.|... ......|++++..... ..........|.|.+++.+|+|.|+
T Consensus 92 l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 171 (196)
T 3p2t_A 92 LVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171 (196)
T ss_dssp EEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEE
T ss_pred EEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEE
Confidence 7776431 112456788899999643 2346778877653210 0001123456999999999999999
Q ss_pred EEc-CCCC-----CccEEEEEEEec
Q psy3125 144 CQV-NTEP-----KMNMAIMLNVDG 162 (163)
Q Consensus 144 C~a-~~~~-----~~~~~~~L~V~~ 162 (163)
|.| |..+ ..+..+.|.|.|
T Consensus 172 C~a~n~~~~~~~s~~S~~~~l~V~G 196 (196)
T 3p2t_A 172 CFSSHGFSHYLLSHPSDPLELIVSG 196 (196)
T ss_dssp EEEECGGGTTEECCCCCCEEEEEC-
T ss_pred EEEEcCCCCcccCCCCCCEEEEeCC
Confidence 999 7653 567788999876
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=130.20 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=106.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+..... ........|+... +.+|.|.+++.+|+|.|+|.+. ..+..+..+.|
T Consensus 232 l~C~~~g~p~p~v~W~~~~~~~~~---~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 232 LLCPAQGFPAPSFRWYKFIEGTTR---KQAVVLNDRVKQV------SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp ECCCCEEESCCEEEEEEECTTSSC---EEECCCSSSEEEE------TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEECCCCCCCEEEEEecCCCCcc---cccccccCceecc------cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 579999989 99999985322111 1111223444432 2479999999999999999994 45556677778
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+. .....|.|.+++.+|+|.|+|.| |..
T Consensus 303 ~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 376 (388)
T 2v5m_A 303 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG------HSESVLRIESVKKEDKGMYQCFVRNDR 376 (388)
T ss_dssp EEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECS------CCSSEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECc------cCCCEEEEecCChhhCEEEEEEEEcCC
Confidence 777652 33456778889999963 3456788998876432 12346999999999999999999 999
Q ss_pred CCccEEEEEEE
Q psy3125 150 PKMNMAIMLNV 160 (163)
Q Consensus 150 ~~~~~~~~L~V 160 (163)
|..+.++.|.|
T Consensus 377 G~~~~~~~l~V 387 (388)
T 2v5m_A 377 ESAEASAELKL 387 (388)
T ss_dssp CEEEEEEEEEE
T ss_pred CcEEEEEEEEe
Confidence 99999999987
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-18 Score=114.62 Aligned_cols=148 Identities=12% Similarity=0.150 Sum_probs=101.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|..+..+ .++.... ....+|.|.+++.+|+|.|.|.+.+ .+..+..+.|
T Consensus 21 L~C~~~g~P~p~i~W~~~~~~~~----------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 21 LTCSTTGCESPFFSWRTQIDSPL----------NGKVTNE----GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EEEEEESCSSCEEEEEETTCCCC----------SSEEEEE----TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEeecCCCCCeEEEECCCCCCc----------cceEEEc----CCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 689999999 9999987322111 1222211 2366799999999999999999944 4455677888
Q ss_pred EEEcCCCce------EeeCCCeEEEecCCC---Cc--eeEEEEeCCCeEEEecCCC--------CceEEEEecccCcCCC
Q psy3125 79 NVDDRGRGA------RLSAGPLLNFAFPDL---LT--TNIYTYTGDARFSVIHPQN--------SDEWNMKIDYAQKRDA 139 (163)
Q Consensus 79 ~V~~~~~~~------~v~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~ 139 (163)
.|..++..+ .+..|..+.+.|... +. ..+.|++++..+....... .....|.|..+..+|+
T Consensus 87 ~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~ 166 (202)
T 1vca_A 87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG 166 (202)
T ss_dssp EEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTT
T ss_pred EEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCC
Confidence 888765433 356788899999742 21 3578998887554322111 1234578899999999
Q ss_pred eeEEEEc-CCCCC-------ccEEEEEEEec
Q psy3125 140 GIYECQV-NTEPK-------MNMAIMLNVDG 162 (163)
Q Consensus 140 G~Y~C~a-~~~~~-------~~~~~~L~V~~ 162 (163)
|.|+|+| |..+. .+..+.|+|..
T Consensus 167 g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp CEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred CeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence 9999999 76554 34677887764
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=131.56 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=104.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+.. ....|+.... .....+|.|.+++.+|+|.|+|.+.+ .+.. +..+.
T Consensus 232 l~C~~~g~p~~~i~W~~--~g~~~~~-----~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 302 (395)
T 1bih_A 232 IYCMYGSNPMGYPNYFK--NGKDVNG-----NPEDRITRHN--RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302 (395)
T ss_dssp EEEEEECSSCCCCEEEE--TTEECCC-----CTTSSEESCS--SSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred EEEEeccCCCCeEEEEE--CCEEcCC-----CCceeEEEEe--cCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEE
Confidence 579999999 9999998 3322211 1123333221 22345799999999999999999944 3443 33777
Q ss_pred EEEEcCC------Cc-eEeeCCCeEEEecCC--CCceeEEEEeCCCeE-----EEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 78 LNVDDRG------RG-ARLSAGPLLNFAFPD--LLTTNIYTYTGDARF-----SVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 78 l~V~~~~------~~-~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
|.|..++ .. ..+..|..+.+.|.. .+.+.+.|++++..+ .+.. ..|.|.+++.+|+|.|+
T Consensus 303 l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~ 376 (395)
T 1bih_A 303 LTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD------SGLVIKGVKNGDKGYYG 376 (395)
T ss_dssp EEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEET------TEEEESSCCSTTCEEEE
T ss_pred EEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEEC------CEEEEeeCCcccCEEEE
Confidence 8776542 22 567788889999963 345678999876532 2221 26999999999999999
Q ss_pred EEc-CCCCCccEEEEEEEe
Q psy3125 144 CQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 144 C~a-~~~~~~~~~~~L~V~ 161 (163)
|.| |..|..+..+.|.|.
T Consensus 377 C~a~N~~G~~~~~~~l~V~ 395 (395)
T 1bih_A 377 CRATNEHGDKYFETLVQVN 395 (395)
T ss_dssp EEEEETTEEEEEEEEEEEC
T ss_pred EEEEccCCCceEEEEEEEC
Confidence 999 999999999999883
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=119.60 Aligned_cols=146 Identities=13% Similarity=0.235 Sum_probs=94.9
Q ss_pred CceEEecCC-CcEEEEEecCCe---eE-Eecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---IL-TTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP- 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~-~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~- 70 (163)
|.|. .+.+ +.|.|+|.+... .+ ..... .....+|+.+.. .....++|.|.+++.+|+|.|+|.+.+..
T Consensus 20 L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g 97 (238)
T 2p1y_A 20 LSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELATPSQTSVYFCASGDLGQ 97 (238)
T ss_dssp EEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCCGGGCEEEEEEEEC---
T ss_pred EEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCCcccCeeEEEEEEeCCC
Confidence 6799 6777 999999953221 11 11000 011246887765 23457889999999999999999995431
Q ss_pred ---C--eeEEEEEEEEcCC------------------CceEeeCCCeEEEecCC--CCceeEEEEeCC------------
Q psy3125 71 ---K--MNMAIMLNVDDRG------------------RGARLSAGPLLNFAFPD--LLTTNIYTYTGD------------ 113 (163)
Q Consensus 71 ---~--~~~~~~l~V~~~~------------------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~------------ 113 (163)
. ....+.|.|...+ ....+..|..+.+.|.. .+.+.+.|++..
T Consensus 98 ~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~ 177 (238)
T 2p1y_A 98 TNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISIL 177 (238)
T ss_dssp ---CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEE
T ss_pred ccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEc
Confidence 1 1234567775432 22356788999999964 334678888753
Q ss_pred --------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 114 --------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 114 --------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.|+.+..........|.|.+++.+|+|.|+|.| |.
T Consensus 178 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 178 SVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp TTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred cCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence 122222112234568999999999999999999 65
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-18 Score=115.21 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=105.1
Q ss_pred CceEEecCC------CcEEEEEecCCeeEEecceE-e------cCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLHILTTNIYT-Y------TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~~~~~~~~~-~------~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.+.| ..|.|+|.+ ..+....... . ...+|+.+.... ..++.+|.|.+++.+|+|.|+|++
T Consensus 21 L~C~~~~~p~~~~~~~~v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 99 (222)
T 3sbw_C 21 IECKFPVEKQLDLAALIVYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI 99 (222)
T ss_dssp EEEECCCCSSCCTTTCEEEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEeEecCCCCCCCccEEEEEEECC-cEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeEEEEEE
Confidence 679987665 379999843 2222221111 1 113577765421 235789999999999999999999
Q ss_pred eCCCCeeEEEEEEEEcCCCce------EeeCCCeEEEecCC--CCceeEEEEeCCCeEEE-------ecCCCCceEEEEe
Q psy3125 67 NTEPKMNMAIMLNVDDRGRGA------RLSAGPLLNFAFPD--LLTTNIYTYTGDARFSV-------IHPQNSDEWNMKI 131 (163)
Q Consensus 67 ~~~~~~~~~~~l~V~~~~~~~------~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~i 131 (163)
.+.+.....+.|.|..++..+ .+..|..+.+.|.. .+.+.+.|+.+++.... ..........+.+
T Consensus 100 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
T 3sbw_C 100 SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTST 179 (222)
T ss_dssp ESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEE
T ss_pred EeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEE
Confidence 765666777889998765332 33567888999963 45578899987443211 1111111111222
Q ss_pred cccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 132 DYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
-.++.+|+|.|+|.| |..+.....+.|.|.+
T Consensus 180 l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 180 LRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp EEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 345678999999999 9999999999998864
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=124.85 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=109.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ....++.+... ..+..+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 24 l~C~~~g~p~~~v~W~~--~~~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 94 (305)
T 2nzi_A 24 LVCKVTGHPKPIVKWYR--QGKEII------ADGLKYRIQEF-KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94 (305)
T ss_dssp EEEEEECSSCCEEEEEE--TTEECC------CCSSSEEEEEE-TTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEE--CCEEcc------cCCCeEEEEEC-CCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEE
Confidence 689999999 9999998 322221 12346655432 234678999999999999999999 444555667777
Q ss_pred EEEcCC-----------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeE------EEecCCCCceEEEEecc-cCcCC
Q psy3125 79 NVDDRG-----------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDY-AQKRD 138 (163)
Q Consensus 79 ~V~~~~-----------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~-v~~~D 138 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+ .+.. ......|.|.+ ++.+|
T Consensus 95 ~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~d 172 (305)
T 2nzi_A 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV--TRSFTSLVFPNGVERKD 172 (305)
T ss_dssp EECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEE--CSSEEEEEETTCCCSTT
T ss_pred EEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEE--cCCceEEEEecCCccCc
Confidence 776432 23456678889999863 345678898876533 2221 12356799999 99999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|+|.| |..|..+..+.|.|.+
T Consensus 173 ~G~Y~C~a~N~~G~~~~~~~l~v~~ 197 (305)
T 2nzi_A 173 AGFYVVCAKNRFGIDQKTVELDVAD 197 (305)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred cEEEEEEEEeCCCceeeEEEEEEec
Confidence 99999999 8889999999998865
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=117.89 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=104.4
Q ss_pred CceEEecC-------C-CcEEEEEecCC----eeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL-------G-RPVSWMRKRDL----HILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~-------~-~~v~W~k~~~~----~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.+. + +.|.|+|.+.. .++.... ......+|+.+..+...++++|.|.+++.+|+|.|.|
T Consensus 20 L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 99 (214)
T 2zg1_A 20 VPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFF 99 (214)
T ss_dssp ECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhhCceEEE
Confidence 67998865 5 88999985432 1222111 0112347888775433457789999999999999999
Q ss_pred EeeCCCC--e---eEEEEEEEEcCCCce------EeeCCCeEEEecCCC------CceeEEEEeCCCeEEEecCCCCceE
Q psy3125 65 QVNTEPK--M---NMAIMLNVDDRGRGA------RLSAGPLLNFAFPDL------LTTNIYTYTGDARFSVIHPQNSDEW 127 (163)
Q Consensus 65 ~~~~~~~--~---~~~~~l~V~~~~~~~------~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (163)
++.+... . ...+.|.|...+..+ .+..|..+.+.|... +.+.+.|++++.... ........
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~--~~~~~~~~ 177 (214)
T 2zg1_A 100 RVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL--DPETTRSS 177 (214)
T ss_dssp EEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSS--CSSCCCSS
T ss_pred EEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccC--CCCceeEE
Confidence 9955431 1 246778887653222 244678899999752 457889998865321 11123456
Q ss_pred EEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
.|.|..+..+|+|.|+|.| |..+ ..+..+.|+|
T Consensus 178 ~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 178 ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp EEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred EEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 7999999999999999999 7543 4556666655
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=119.83 Aligned_cols=159 Identities=16% Similarity=0.271 Sum_probs=99.5
Q ss_pred CceEEecC--C-CcEEEEEecCCe---eE-E--ecc-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLH---IL-T--TNI-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~---~~-~--~~~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + +.|.|+|.+... .+ . .+. ... ...+|+.+......+.++|.|.+++.+|+|.|+|++.+
T Consensus 28 L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n 107 (257)
T 3gkz_A 28 LTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFD 107 (257)
T ss_dssp EEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEec
Confidence 68999984 4 899999954221 11 0 000 011 12468888764345688999999999999999999955
Q ss_pred C-----CCeeEEEEEEEEcC--------------------CCceEeeCCCeEEEecCC--CCce-eEEEEeC--CC----
Q psy3125 69 E-----PKMNMAIMLNVDDR--------------------GRGARLSAGPLLNFAFPD--LLTT-NIYTYTG--DA---- 114 (163)
Q Consensus 69 ~-----~~~~~~~~l~V~~~--------------------~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~--~~---- 114 (163)
. ......+.|.|..+ +....+..|..+.+.|.. .... .+.|++. +.
T Consensus 108 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~ 187 (257)
T 3gkz_A 108 SDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKL 187 (257)
T ss_dssp TTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEE
T ss_pred CCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEE
Confidence 3 11233455666543 122456678899999963 2333 7889863 21
Q ss_pred --------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEEe
Q psy3125 115 --------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNVD 161 (163)
Q Consensus 115 --------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V~ 161 (163)
|+.+.. ......|.|.+++.+|+|.|+|.| +.. .....-..|.|.
T Consensus 188 ~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~ 248 (257)
T 3gkz_A 188 WIYSTSNLASGVPARFSGSG--SGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK 248 (257)
T ss_dssp EEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEccccCCCcCCCEEEec--CCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence 111111 123557999999999999999999 432 222344556654
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=122.47 Aligned_cols=146 Identities=18% Similarity=0.270 Sum_probs=94.8
Q ss_pred CceEEecC--C-CcEEEEEecCC---eeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---HILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-- 70 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-- 70 (163)
|.|.+.+. + +.|.|+|.+.. ..+..... .....+||.+.. ....++|.|.+++.+|+|.|+|.+.+..
T Consensus 22 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~ 99 (256)
T 3ux9_B 22 ISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDEADYYCQVRDNNEN 99 (256)
T ss_dssp EEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETTTT
T ss_pred EEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhCEEEEEEEEECCCC
Confidence 68999987 6 99999985422 12211111 111346888765 3467899999999999999999995421
Q ss_pred --CeeEEEEEEEEcCC--------------------------CceEeeCCCeEEEecCCC--C--ceeEEEEeCC--C--
Q psy3125 71 --KMNMAIMLNVDDRG--------------------------RGARLSAGPLLNFAFPDL--L--TTNIYTYTGD--A-- 114 (163)
Q Consensus 71 --~~~~~~~l~V~~~~--------------------------~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~--~-- 114 (163)
.....+.|.|..++ +...+..|..+.+.|... . ...+.|++.. .
T Consensus 100 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~ 179 (256)
T 3ux9_B 100 EWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGL 179 (256)
T ss_dssp EEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCE
T ss_pred ceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCc
Confidence 22234456655432 122466788899999642 2 5678888652 1
Q ss_pred ---------------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 115 ---------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 115 ---------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
|+.+..........|+|.+++.+|+|.|+|.| +.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 180 EWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp EEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 33333222244667999999999999999999 53
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=130.09 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=112.6
Q ss_pred CceEEecCC----CcEEEEEecCC----eeEEecce-EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL----HILTTNIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP 70 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~----~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~ 70 (163)
|.|.+.+.+ ..|.|+|.+.. .++..... .....+|+.+......+.++|.|.+++.+|+|.|+|.+ +..+
T Consensus 20 L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~ 99 (585)
T 2ocw_A 20 ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99 (585)
T ss_pred EEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCC
Confidence 689999886 38999985332 12221111 11124688877543455788999999999999999999 4444
Q ss_pred CeeEEEEEEEEcCC------CceEeeCCCeEEEecCCC---CceeEEEEeCCCe-------------------EEEec-C
Q psy3125 71 KMNMAIMLNVDDRG------RGARLSAGPLLNFAFPDL---LTTNIYTYTGDAR-------------------FSVIH-P 121 (163)
Q Consensus 71 ~~~~~~~l~V~~~~------~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------------~~~~~-~ 121 (163)
..+..+.|.|..++ ....+..|..+.+.|... +...+.|++++.. +.+.. .
T Consensus 100 ~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
T 2ocw_A 100 GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQG 179 (585)
T ss_pred CceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEecc
Confidence 56677888887653 334577888999999643 2356889887642 22211 1
Q ss_pred CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 122 QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 122 ~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.......|.|.+++.+|+|.|+|.| |..+..+..+.|.|..
T Consensus 180 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 221 (585)
T 2ocw_A 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221 (585)
T ss_pred CCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEcc
Confidence 1122347999999999999999999 8888888899988864
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-18 Score=113.94 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=101.4
Q ss_pred CceEEecCC-C---cEEEEEecCCeeEE-----e-cceE-e--cCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-R---PVSWMRKRDLHILT-----T-NIYT-Y--TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-~---~v~W~k~~~~~~~~-----~-~~~~-~--~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|+|.+.+.+ + .|.|+|.+...... . .... . ...+|+.+.... ...+++|.|.+++.+|+|.|.|.+
T Consensus 19 L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~ 98 (218)
T 4frw_A 19 LPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRV 98 (218)
T ss_dssp ECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCEEEEEEE
T ss_pred EEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCCceeEEE
Confidence 689999887 4 48999854322111 0 0000 0 113455544321 234778999999999999999999
Q ss_pred eCC-C-CeeEEEEEEEEcCCC-------ceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecC-----CCCceEEEE
Q psy3125 67 NTE-P-KMNMAIMLNVDDRGR-------GARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHP-----QNSDEWNMK 130 (163)
Q Consensus 67 ~~~-~-~~~~~~~l~V~~~~~-------~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~ 130 (163)
.+. . .......+.+..++. ...+..+..+.+.|. ..+.+.+.|++++........ .....+.|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~ 178 (218)
T 4frw_A 99 STFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFH 178 (218)
T ss_dssp EEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEE
T ss_pred EeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEE
Confidence 542 2 223333444444322 223344566777775 345578999988775543221 112245799
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
|.+++.+|+|.|+|.| |..+..+..+.|.|.
T Consensus 179 i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 179 LVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp ECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred EeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 9999999999999999 888888777776654
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=120.98 Aligned_cols=159 Identities=14% Similarity=0.242 Sum_probs=102.2
Q ss_pred CceEEecCC---CcEEEEEecCCe---eEEe-c---ce-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---ILTT-N---IY-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~~~-~---~~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+... .+.. . .. .. ...+|+.+..+...+..+|.|.+++.+|+|.|+|.+.
T Consensus 46 L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 125 (282)
T 1qok_A 46 LSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEG 125 (282)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEec
Confidence 689999874 899999964321 1111 0 00 00 1246888876434467899999999999999999995
Q ss_pred CCC----C--eeEEEEEEEEcCC---------------------CceEeeCCCeEEEecCC--CCceeEEEEe--CCCeE
Q psy3125 68 TEP----K--MNMAIMLNVDDRG---------------------RGARLSAGPLLNFAFPD--LLTTNIYTYT--GDARF 116 (163)
Q Consensus 68 ~~~----~--~~~~~~l~V~~~~---------------------~~~~v~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 116 (163)
+.. . ....+.|.|..++ ....+..|..+.+.|.. .+ ..+.|++ ++...
T Consensus 126 n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~ 204 (282)
T 1qok_A 126 TPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSP 204 (282)
T ss_dssp CSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCC
T ss_pred cCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCc
Confidence 432 1 2234567776532 12346678889999963 23 6788987 33322
Q ss_pred ------------------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEEec
Q psy3125 117 ------------------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNVDG 162 (163)
Q Consensus 117 ------------------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V~~ 162 (163)
.+.. ......|.|.+++.+|+|.|+|.| +.. ......+.|.|.+
T Consensus 205 ~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 205 KLWIYSTSNLASGVPARFSGSG--SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp EEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEEEecCCCCcccCCeEEec--CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 1111 123567999999999999999999 532 2334556777764
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=121.57 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=101.2
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEe-cce-EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C---
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTT-NIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P--- 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~-~~~-~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~--- 70 (163)
|.|.+.+.+ +.|.|+|.+.. ..+.. ... .....+||.+.. ..++.+|.|.+++.+|+|.|.|++.+. +
T Consensus 20 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 97 (213)
T 3mj8_L 20 ITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQAGDEADYYCQSWDGTNSAW 97 (213)
T ss_dssp EEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCChhhCEEEEEEeccCCccee
Confidence 689999888 99999985321 11111 111 111346888765 346889999999999999999999543 3
Q ss_pred CeeEEEEEEEEcCC---CceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe-------cCCC--CceE
Q psy3125 71 KMNMAIMLNVDDRG---RGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI-------HPQN--SDEW 127 (163)
Q Consensus 71 ~~~~~~~l~V~~~~---~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~-------~~~~--~~~~ 127 (163)
.....+.|.|...+ +.+.+. .|..+.+.|... +. ..+.|++++..+... .... ....
T Consensus 98 ~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s 177 (213)
T 3mj8_L 98 VFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATS 177 (213)
T ss_dssp EEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEE
T ss_pred EEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEE
Confidence 34556778887321 122222 478899999632 22 478899877644210 0001 1234
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.|.|.+++.+|+|.|+|.| |..+.....+.
T Consensus 178 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 178 YLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp EEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred EEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 5999999999999999999 77665555543
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.4e-19 Score=122.37 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=88.4
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecc-----eEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNI-----YTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~-----~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|... ...+.... ..... .+|+........+.++|.|.+++.+|+|.|+|.+.+.
T Consensus 22 L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 101 (259)
T 3omz_A 22 ITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQ 101 (259)
T ss_dssp EECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEEEECT
T ss_pred EEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEEEeeC
Confidence 689999998 9999998532 11121111 00111 1233333333456788999999999999999999543
Q ss_pred C----CeeEEEEEEEEcC-----------------------CCceEeeCCCeEEEecCCC---CceeEEEEeCCC-----
Q psy3125 70 P----KMNMAIMLNVDDR-----------------------GRGARLSAGPLLNFAFPDL---LTTNIYTYTGDA----- 114 (163)
Q Consensus 70 ~----~~~~~~~l~V~~~-----------------------~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~----- 114 (163)
. .....+.|.|... +....+..|..+.+.|... +...+.|++...
T Consensus 102 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~ 181 (259)
T 3omz_A 102 NYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMI 181 (259)
T ss_dssp TSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEE
T ss_pred CccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcE
Confidence 2 2334455666542 2335677888999999532 456788886431
Q ss_pred ---------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 ---------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ---------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..........|.|.+++.+|+|.|+|.|
T Consensus 182 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 228 (259)
T 3omz_A 182 FLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCAL 228 (259)
T ss_dssp EEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEE
T ss_pred EEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEE
Confidence 22222112223456999999999999999999
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=119.28 Aligned_cols=150 Identities=10% Similarity=0.041 Sum_probs=97.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC----CeeEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP----KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~----~~~~~~ 76 (163)
|.|.+.+.+..+.|+|. +..+.... ...+ . .....+|.|.+++.+|+|.|+|.+.+.. ..+..+
T Consensus 24 L~C~~~~~~~~~~W~k~--g~~~~~~~----~~~~---~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~ 91 (198)
T 1ugn_A 24 LRCQGGQETQEYRLYRE--KKTAPWIT----RIPQ---E---LVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPL 91 (198)
T ss_dssp EEEECCTTCCCEEEEES--SSCCHHHH----TSCH---H---HHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCE
T ss_pred EEEEecCCCcEEEEEEC--Cccccccc----cccc---c---CCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccE
Confidence 67999988877999983 22211000 0000 0 1134579999999999999999995432 335567
Q ss_pred EEEEEcCC--------CceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEec------CCCCceEEEEecccCcCCCee
Q psy3125 77 MLNVDDRG--------RGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIH------PQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 77 ~l~V~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|.|.... +...+..|..+.+.|... ....+.|++++....... ........|.|.+++.+|+|.
T Consensus 92 ~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 171 (198)
T 1ugn_A 92 ELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWW 171 (198)
T ss_dssp EEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEE
T ss_pred EEEEcccccCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeE
Confidence 78887631 123566788899999643 246788988876542111 111235789999999999999
Q ss_pred EEEEc-CCCC-----CccEEEEEEEec
Q psy3125 142 YECQV-NTEP-----KMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~-----~~~~~~~L~V~~ 162 (163)
|+|.| |..+ ..+..+.|.|.|
T Consensus 172 Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (198)
T 1ugn_A 172 YRCYAYDSNSPYEWSLPSDLLELLVLG 198 (198)
T ss_dssp EEEEEECTTSTTEECCCCCCEEEEEEC
T ss_pred EEEEEEeCCCCccccCcCceEEEEecC
Confidence 99999 6643 337889999876
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=122.21 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=96.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeE--EEEEcccCcCCCeeEEEEeeCCC---CeeEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEW--NMKIDYAQKRDAGIYECQVNTEP---KMNMA 75 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~ 75 (163)
|.|.+.+.++.+.|+|.+.. +.. . ..+. .. ..+.. +|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 28 L~C~~~~~~~~~~W~k~g~~-~~~-~------~~~~--~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~ 95 (218)
T 1uct_A 28 IQCQAIREAYLTQLMIIKNS-TYR-E------IGRR--LK--FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT 95 (218)
T ss_dssp EEECCCTTCSEEEEEEEETT-EEE-E------CSEE--CC------CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred EEEEcCCCCCEEEEEECCCc-ccc-c------cccc--CC--CCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCC
Confidence 57998874489999984322 111 1 0111 10 11234 79999999999999999995432 23445
Q ss_pred EEEEEEcCC--------CceEeeCCCeEEEec-CCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEE
Q psy3125 76 IMLNVDDRG--------RGARLSAGPLLNFAF-PDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 76 ~~l~V~~~~--------~~~~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
+.|.|.... +...+..|..+.+.| ... +.....|++++..+............|.|.+++.+|+|.|+|.
T Consensus 96 ~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 175 (218)
T 1uct_A 96 LELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCY 175 (218)
T ss_dssp EEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEE
T ss_pred EEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEE
Confidence 677776521 123566788899999 432 3356788887654321111123456799999999999999999
Q ss_pred c-CCC-----CCccEEEEEEEecC
Q psy3125 146 V-NTE-----PKMNMAIMLNVDGK 163 (163)
Q Consensus 146 a-~~~-----~~~~~~~~L~V~~~ 163 (163)
| +.. ...+..+.|.|.|+
T Consensus 176 a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 176 GWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp EECTTSTTEECCCCCCEEEEEC--
T ss_pred EEcCCCCCcCCCCCCcEEEEEecC
Confidence 9 542 25577899999874
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=119.25 Aligned_cols=138 Identities=17% Similarity=0.345 Sum_probs=92.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+ | +.|.|+| ++..+... . ..+.+|.|.+++.+|+|.|+|.+++.... .+.|.
T Consensus 23 L~C~~---p~~~i~W~k--~g~~l~~~------------~----~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~--~~~v~ 79 (204)
T 1sy6_A 23 LTCDA---EAKNITWFK--DGKMIGFL------------T----EDKKKWNLGSNAKDPRGMYQCKGSQNKSK--PLQVY 79 (204)
T ss_dssp EEECS---CSSEEEEEE--TTEEEEEE------------E----SSCCCEEEEEGGGCCEEEEEEESSSSCCC--CEEEE
T ss_pred EEEcC---CCCEEEEEE--CCEECCCC------------C----CCCCeEEeCCCCcCCCEEEEEEecCCCCe--eEEEE
Confidence 57888 6 9999998 33333211 0 12346999999999999999998543322 23344
Q ss_pred EE---------------------------c----C----CCceEee-CCCeEEEecCCCCceeEEEEeCCCeEEEecCCC
Q psy3125 80 VD---------------------------D----R----GRGARLS-AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQN 123 (163)
Q Consensus 80 V~---------------------------~----~----~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (163)
|. . . .....+. .|..+.+.|...+.+.+.|++++..+.......
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l~~~~~~~ 159 (204)
T 1sy6_A 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDK 159 (204)
T ss_dssp EEC------------------------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEESCCTTCT
T ss_pred EEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEECCCccCCc
Confidence 33 0 0 0111233 788999999976677889998876543221110
Q ss_pred ---CceEEEEeccc-CcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 124 ---SDEWNMKIDYA-QKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 124 ---~~~~~L~i~~v-~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
.....|.|.++ +.+|+|.|+|.| |..+. .+..++|+|+
T Consensus 160 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~ 203 (204)
T 1sy6_A 160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203 (204)
T ss_dssp TEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred eEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence 12456999999 999999999999 77775 4677787775
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-19 Score=130.72 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=100.1
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 74 (163)
|.|.+.+ .| +.|.|+|. +..+..+.. .+. ..+.. ....+|.|.+++.+|+|.|+|.+.+. .+.
T Consensus 247 L~C~~~g~~p~p~i~W~k~--g~~l~~~~~~~~~~~~-~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~--~~~ 315 (423)
T 3qs7_E 247 IRCKAVHVNHGFGLTWELE--NKALEEGNYFEMSTYS-TNRTM------IRILFAFVSSVARNDTGYYTCSSSKH--PSQ 315 (423)
T ss_dssp EEEEEEESSSCCCEEEEES--SSBCCGGGEEEEEEEE-TTTEE------EEEEEEEESSCCTTTCEEEEEEETTE--EEE
T ss_pred EEEEEEcCCCCcEEEEEEC--CEEccccceeeccccc-CCcee------EEEEEEEEeecCHHHCEEEEEEEecC--CCc
Confidence 6899998 66 99999983 222211100 000 11111 12457999999999999999999655 777
Q ss_pred EEEEEEEcCCC--------ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 75 AIMLNVDDRGR--------GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 75 ~~~l~V~~~~~--------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+.|.|.+++. ...+..|..+.+.|.. .+.+.+.|++++..+............+.+.....+|+|.|+|
T Consensus 316 ~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC 395 (423)
T 3qs7_E 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIF 395 (423)
T ss_dssp EEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEE
T ss_pred eEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEE
Confidence 78888876532 2335567788888863 3557899999887664332101112223336677899999999
Q ss_pred Ec-CCCCCccEEEEEEEecC
Q psy3125 145 QV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~~ 163 (163)
.| |..|..+.++.|.|.++
T Consensus 396 ~A~N~~G~~~~s~~L~v~~~ 415 (423)
T 3qs7_E 396 HAENDDAQFTKMFTLNIRSG 415 (423)
T ss_dssp EEEETTEEEEEEEEEC----
T ss_pred EEEcCCceEEEEEEEEEecC
Confidence 99 99999999999999864
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=128.57 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=105.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ...++.... ......+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 143 l~C~~~g~p~~~v~W~~--~~~~~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 212 (334)
T 1ry7_B 143 FRCPAAGNPTPSISWLK--NGREFR-------GEHRIGGIK-LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212 (334)
T ss_dssp EECCCCCSSCCEEECCB--TTBCCC-------TTSSTTCCC-CCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEE
T ss_pred EEEEccCCCCCeEEEEE--CCEECc-------cccccccee-cccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEE
Confidence 579999999 9999998 222221 112211110 11245689999999999999999994 44556677788
Q ss_pred EEEcCC-----------CceEeeCCCeEEEecCC--CCceeEEEEe----CCCeEEE--------ecCC-----CCceEE
Q psy3125 79 NVDDRG-----------RGARLSAGPLLNFAFPD--LLTTNIYTYT----GDARFSV--------IHPQ-----NSDEWN 128 (163)
Q Consensus 79 ~V~~~~-----------~~~~v~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~--------~~~~-----~~~~~~ 128 (163)
.|...+ ....+..|..+.+.|.. .+.+.+.|++ ++..+.. .... ......
T Consensus 213 ~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (334)
T 1ry7_B 213 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292 (334)
T ss_dssp EEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCC
T ss_pred EEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccE
Confidence 887631 23456678889999974 4556889988 3332211 1100 111236
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 293 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 327 (334)
T 1ry7_B 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327 (334)
T ss_dssp EEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred EEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence 999999999999999999 9999999999999975
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=118.76 Aligned_cols=146 Identities=15% Similarity=0.234 Sum_probs=93.9
Q ss_pred CceEEecCC------CcEEEEEecCCe---eEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLH---ILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~---~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+... .+........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 21 L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 98 (247)
T 1svz_A 21 ISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGIYYCFQGSH 98 (247)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 679998775 789999864321 1211111111 246888764 346789999999999999999999553
Q ss_pred CC--eeEEEEEEEEcCC-------------------CceEeeCCCeEEEecCCC----CceeEEEEeCC-----------
Q psy3125 70 PK--MNMAIMLNVDDRG-------------------RGARLSAGPLLNFAFPDL----LTTNIYTYTGD----------- 113 (163)
Q Consensus 70 ~~--~~~~~~l~V~~~~-------------------~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~----------- 113 (163)
.. ....+.|.|..++ +...+..|..+.+.|... ....+.|++..
T Consensus 99 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~ 178 (247)
T 1svz_A 99 FPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWI 178 (247)
T ss_dssp SSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEE
T ss_pred CccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEE
Confidence 22 2234556665431 223466788899999642 23578898752
Q ss_pred --------------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 114 --------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 114 --------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.|+.+..........|.|.+++.+|+|.|+|.| |.
T Consensus 179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 179 NTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp CTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 122222111223468999999999999999999 53
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=136.12 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=102.0
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEE---eccC-CCCeEEEEEcccCcCCCeeEEEEeeCCCCeeE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSV---IHPQ-NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 74 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~---~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 74 (163)
|.|.+. +.| +.|.|+|. +..+..+ .++.. .... .....+|.|.+++.+|+|.|+|.+.+. .+.
T Consensus 247 L~C~~~~g~p~p~i~W~k~--g~~l~~~-------~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~--~~~ 315 (527)
T 3qs9_E 247 IRCKAVHVNHGFGLTWELE--NKALEEG-------NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--PSQ 315 (527)
T ss_dssp EEEEEEESSSCCCEEEECS--SSCCCGG-------GEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE--EEE
T ss_pred EEEEEccCCCCeEEEEEEC--CEECCCC-------ceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC--CCc
Confidence 689997 888 99999983 2222111 11111 0000 012456999999999999999999654 666
Q ss_pred EEEEEEEcCC--------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 75 AIMLNVDDRG--------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 75 ~~~l~V~~~~--------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+.|.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+............|.|.+++.+|+|.|+|
T Consensus 316 ~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC 395 (527)
T 3qs9_E 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIF 395 (527)
T ss_dssp EEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEE
T ss_pred eEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEE
Confidence 7778876543 12345567778888853 3456789998877654332222234569999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+..+.|.|..
T Consensus 396 ~A~N~~g~~~~~~~L~V~~ 414 (527)
T 3qs9_E 396 HAENDDAQFTKMFTLNIRR 414 (527)
T ss_dssp EEEETTEEEEEEEEEC--C
T ss_pred EEEeCCCcEEEEEEEEEec
Confidence 99 9889999999998864
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=116.44 Aligned_cols=161 Identities=9% Similarity=0.079 Sum_probs=97.3
Q ss_pred CceEEecCC----CcEEEEEecCCeeEE-e-cceEec------CCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILT-T-NIYTYT------GDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~-~-~~~~~~------~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.+ ..|.|+|.+....+. . ++.... ...|+...... ..++++|.|.+++.+|+|.|+|.+.
T Consensus 24 L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 103 (226)
T 4f80_A 24 LPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQ 103 (226)
T ss_dssp EEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEE
Confidence 689998766 369999854333221 1 111111 12455554321 2357899999999999999999995
Q ss_pred C-CCCeeEEEEEEEEcCC----CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEe------cCCCCceEEEEecc
Q psy3125 68 T-EPKMNMAIMLNVDDRG----RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVI------HPQNSDEWNMKIDY 133 (163)
Q Consensus 68 ~-~~~~~~~~~l~V~~~~----~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~ 133 (163)
+ .+.....+.+.+.... ....+..|..+.+.|.. .+.+.+.|+++++..... .........+.+..
T Consensus 104 n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~ 183 (226)
T 4f80_A 104 DGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI 183 (226)
T ss_dssp ETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEE
T ss_pred CCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEE
Confidence 4 3333444444444432 12245567788888853 356788998765432111 11112222344557
Q ss_pred cCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 134 AQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 134 v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
++.+|+|.|+|.| |..+..+..+.|.|.
T Consensus 184 v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ 212 (226)
T 4f80_A 184 MRGSSGEGVSCTIRSSLLGLEKTASISIA 212 (226)
T ss_dssp ECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred echhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence 7889999999999 888999999888875
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=116.67 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=95.6
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ + .+.|+| ++..+. ..+.+|.|.+++.+|+|.|+|.+.+. ..+..+.|
T Consensus 24 L~C~~~~~~~~~~i~W~~--~~~~~~-------------------~~~~~L~i~~v~~~d~G~Y~C~~~~~-~~s~~~~l 81 (176)
T 1f2q_A 24 LTCNGNNFFEVSSTKWFH--NGSLSE-------------------ETNSSLNIVNAKFEDSGEYKCQHQQV-NESEPVYL 81 (176)
T ss_dssp EECCTTCC----CCEEEE--TTEECS-------------------CCSSEEEECSCCGGGCEEEEEECTTS-SCCCCEEE
T ss_pred EEEeCCCCCCcceEEEEE--CCeECC-------------------CCceEEEEeccceecCEEEEEEcCCc-cccccEEE
Confidence 579998888 3 699998 222110 12557999999999999999999542 23445666
Q ss_pred EEEcCC-----CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC-
Q psy3125 79 NVDDRG-----RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT- 148 (163)
Q Consensus 79 ~V~~~~-----~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~- 148 (163)
.|..++ +...+..|..+.+.|.. .+...+.|++++..+. .......|.|.+++.+|+|.|+|.| |.
T Consensus 82 ~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 157 (176)
T 1f2q_A 82 EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQ 157 (176)
T ss_dssp EEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC----SCCCSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe----eecCCCeEEECCCCcccCEEEEEEEEeCC
Confidence 666331 23456688889999965 3345788988776442 1223457999999999999999999 64
Q ss_pred CCCccEEEEEEEec
Q psy3125 149 EPKMNMAIMLNVDG 162 (163)
Q Consensus 149 ~~~~~~~~~L~V~~ 162 (163)
.+..+..+.|.|.+
T Consensus 158 ~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 158 LDYESEPLNITVIK 171 (176)
T ss_dssp EEEECCCEEEEEEC
T ss_pred cceEecCEEEEEec
Confidence 34566778888875
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=118.98 Aligned_cols=137 Identities=18% Similarity=0.320 Sum_probs=98.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~-~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| +...+ . ..+..+|.|.+++.+|+|.|+|.+.+. +. .+..+.
T Consensus 38 L~C~~~~~p~~~v~W~~--~~~~~-------~-----------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~ 97 (218)
T 3k0w_A 38 LCCRATGHPFVQYQWFK--MNKEI-------P-----------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97 (218)
T ss_dssp EECEETTTTSSEEEEEE--TTEEC-------T-----------TCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEE
T ss_pred EEeeecCCCCCEEEEEE--CCEEC-------C-----------CCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEE
Confidence 679999998 9999998 22211 1 123557999999999999999999543 22 245566
Q ss_pred EEEEcCC---------------------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEeccc
Q psy3125 78 LNVDDRG---------------------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYA 134 (163)
Q Consensus 78 l~V~~~~---------------------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 134 (163)
|.|...+ ....+..|..+.+.|.. .+.+.+.|++++..+. . .....|.|.++
T Consensus 98 l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~--~---~~~~~L~i~~v 172 (218)
T 3k0w_A 98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT--H---ETKKLYMVPYV 172 (218)
T ss_dssp EEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT--T---CCSSEEEESSC
T ss_pred EEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC--C---CCCCEEEEeec
Confidence 7776542 23456678888999963 4456789988765332 1 22346999999
Q ss_pred CcCCCeeEEEEc-CCCCC-ccEEEEEEEec
Q psy3125 135 QKRDAGIYECQV-NTEPK-MNMAIMLNVDG 162 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~~ 162 (163)
+.+|+|.|+|.| |..|. .+..+.|.|.+
T Consensus 173 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 173 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp CGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred ChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 999999999999 76665 67788888764
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=129.79 Aligned_cols=145 Identities=15% Similarity=0.254 Sum_probs=104.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+|.+.. +. .++ .....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 227 l~C~~~g~p~~~i~W~~~~~~--~~---------~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 289 (382)
T 1cs6_A 227 LECFAFGNPVPQIKWRKLDGS--QT---------SKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289 (382)
T ss_dssp EECEEEEESCCEEEEEECCSC--CS---------CCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEccCCCCEEEEEECCcc--cc---------cEE------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 579999999 99999984322 10 010 123557999999999999999999 445555666677
Q ss_pred EEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+............|.|.+++.+|+|.|+|.| |..
T Consensus 290 ~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 369 (382)
T 1cs6_A 290 IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKH 369 (382)
T ss_dssp EEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCC
Confidence 77654 334567778889999963 345678898876533211100001236999999999999999999 999
Q ss_pred CCccEEEEEEEec
Q psy3125 150 PKMNMAIMLNVDG 162 (163)
Q Consensus 150 ~~~~~~~~L~V~~ 162 (163)
|..+..+.|.|..
T Consensus 370 G~~~~~~~l~V~a 382 (382)
T 1cs6_A 370 GTVYASAELTVQA 382 (382)
T ss_dssp EEEEEEEEEEEEC
T ss_pred CeEEEEEEEEEeC
Confidence 9999999999963
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=117.65 Aligned_cols=150 Identities=20% Similarity=0.293 Sum_probs=100.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C--eeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K--MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~--~~~~~ 76 (163)
|.|.+.+.| +.+.|+|.+ ..+. ...+.|+.+.. +.+|.|.+++.+|+|.|+|.+.+.. . ....+
T Consensus 22 l~C~~~~~p~~~v~W~~~~-~~~~------~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 89 (189)
T 2v5t_A 22 VVCRVSSSPAPAVSWLYHN-EEVT------TISDNRFAMLA-----NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 89 (189)
T ss_dssp ECCEEECSSCCEEEEEC------C------BCCCTTEEECT-----TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECC-ccce------eccCCeEEEec-----CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEE
Confidence 689999988 999999832 1111 11356666553 3359999999999999999995432 2 22344
Q ss_pred EEEEEcCC------C--ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEE
Q psy3125 77 MLNVDDRG------R--GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 77 ~l~V~~~~------~--~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.|.|..++ . ...+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|
T Consensus 90 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 169 (189)
T 2v5t_A 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 169 (189)
T ss_dssp EEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred EEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEE
Confidence 55554432 1 2244567888898864 34557889887653321100 00123469999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+..+.|.|..
T Consensus 170 ~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 170 RATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCceeEEEEEEEEe
Confidence 99 8889999999998864
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-19 Score=124.95 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=103.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-C-C-CeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-E-P-KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~-~-~~~~~~ 76 (163)
|.|.+.+.| +.|.|+|.+. .+.. ..+.++.... +.+|.|.+++.+|+|.|+|.+.+ . + .....+
T Consensus 120 l~C~~~~~p~~~v~W~~~~~-~~~~------~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 187 (291)
T 1qz1_A 120 IVCDVVSSLPPTIIWKHKGR-DVIL------KKDVRFIVLS-----NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187 (291)
T ss_dssp ECCEEECSSCCEEEEEETTS-CSST------TCCTTEEECT-----TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred EEEEeccCCCCEEEEEECCE-Eccc------CCCceEEEcc-----CCcEEEccCccccCeEEEEEEEecCCCceeeEEE
Confidence 579999999 9999998321 1110 1234555443 34699999999999999999953 2 2 223445
Q ss_pred EEEEEcCCC--------ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC------CCCceEEEEecccCcCCCe
Q psy3125 77 MLNVDDRGR--------GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP------QNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 77 ~l~V~~~~~--------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G 140 (163)
.|.|..++. ...+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|
T Consensus 188 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 267 (291)
T 1qz1_A 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267 (291)
T ss_dssp EEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCE
T ss_pred EEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCE
Confidence 565554321 2245568888999963 34567899987653321110 0122356999999999999
Q ss_pred eEEEEc-CCCCCccEEEEEEEecC
Q psy3125 141 IYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 141 ~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
.|+|.| |..|..+..+.|.|..|
T Consensus 268 ~Y~C~a~N~~G~~~~~~~l~V~~k 291 (291)
T 1qz1_A 268 EYVCIAENKAGEQDASIHLKVFAK 291 (291)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEEeCCCceEEEEEEEEEcC
Confidence 999999 99999999999999875
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-19 Score=129.96 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=104.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| ++..+. ...+ .... .+.+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 242 l~C~~~g~p~~~v~W~~--~~~~~~-------~~~~-~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 307 (404)
T 3p3y_A 242 LECIASGVPTPDIAWYK--KGGDLP-------SDKA-KFEN----FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307 (404)
T ss_dssp EECCBCCSSCCEEEEEE--TTBCCC-------TTTE-EEEG----GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEECCCCCCcEEEEE--CCEECC-------CCcc-cccc----cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEE
Confidence 579999999 9999998 322221 1111 2221 24479999999999999999994 45566677777
Q ss_pred EEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-
Q psy3125 79 NVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 79 ~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.|
T Consensus 308 ~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 387 (404)
T 3p3y_A 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS 387 (404)
T ss_dssp EEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEE
T ss_pred EEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEE
Confidence 77654 334567778889999963 345678998876533211100 001236999999999999999999
Q ss_pred CCCCCccEEEEEEEec
Q psy3125 147 NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 147 ~~~~~~~~~~~L~V~~ 162 (163)
|..|..+..+.|.|..
T Consensus 388 N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 388 NEHGYLLANAFVSVLD 403 (404)
T ss_dssp ETTEEEEEEEEEEEC-
T ss_pred eCCCcEEEEEEEEEEe
Confidence 9999999999999863
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=126.32 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=107.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| +...+. ....++.+.. +.+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 241 l~C~~~~~p~~~~~W~~--~~~~~~------~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 307 (403)
T 3laf_A 241 LECCVSGYPPPSFTWLR--GEEVIQ------LRSKKYSLLG-----GSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307 (403)
T ss_dssp ECCEEEEESCCEEEEEE--TTEECC------CSSSSEEEET-----TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCCCCCeEEEEE--CCeecc------CCCceEEECC-----ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence 579999988 9999998 332221 1234454443 346999999999999999999 445556677777
Q ss_pred EEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 79 NVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 79 ~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.++..+|+|.|+|.| |.
T Consensus 308 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 387 (403)
T 3laf_A 308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENE 387 (403)
T ss_dssp EEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred EEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcC
Confidence 77654 334456678889999963 345578898887543211000 011235999999999999999999 99
Q ss_pred CCCccEEEEEEEec
Q psy3125 149 EPKMNMAIMLNVDG 162 (163)
Q Consensus 149 ~~~~~~~~~L~V~~ 162 (163)
.|..+..+.|.|++
T Consensus 388 ~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 388 AGNAQSSAQLIVPK 401 (403)
T ss_dssp TEEEEEEEEEECCC
T ss_pred CceEEEEEEEEEeC
Confidence 99999999999975
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=118.79 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=105.4
Q ss_pred CceEEecCC------CcEEEEEecCCe-eEEecceE---ecCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLH-ILTTNIYT---YTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~-~~~~~~~~---~~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+... ++.+.... ....+|+.+.... ..++.+|.|.+++.+|+|.|+|.+.+.
T Consensus 15 L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 94 (222)
T 4i0k_A 15 LRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQ 94 (222)
T ss_dssp ECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEEC
T ss_pred EEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEEEEEEEeC
Confidence 579888763 679999854332 22221111 1224566655321 123678999999999999999999654
Q ss_pred CCeeEEEEEEEEcCCCc--------eEeeCCCeEEEecCC---CCceeEEEEeCCCeE-----E--EecCCCCceEEEEe
Q psy3125 70 PKMNMAIMLNVDDRGRG--------ARLSAGPLLNFAFPD---LLTTNIYTYTGDARF-----S--VIHPQNSDEWNMKI 131 (163)
Q Consensus 70 ~~~~~~~~l~V~~~~~~--------~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~L~i 131 (163)
...+..+.|.|..++.. ..+..|..+.+.|.. .+.+.+.|+.++... . ...........|.|
T Consensus 95 ~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 174 (222)
T 4i0k_A 95 DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSV 174 (222)
T ss_dssp CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEE
Confidence 44455556666654222 234467788888864 245678888744321 1 11122233345899
Q ss_pred cccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 132 DYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
.+++.+|+|.|+|.| |..+..+..+.|.|.++
T Consensus 175 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 175 LRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp EEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred EEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 999999999999999 99999999999998764
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=110.52 Aligned_cols=141 Identities=16% Similarity=0.301 Sum_probs=97.1
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 77 (163)
|.|.+.+.+ + .+.|+| ++..+..+ .+ ......|.|. +.+|+|.|+|.+.+. ....+.
T Consensus 18 l~C~~~~~~~p~~~~~W~k--~~~~l~~~-------~~-------~~~~~~l~i~--~~~d~G~Y~C~~~n~--~~~~~~ 77 (184)
T 3b5h_A 18 LTCSLNDSATEVTGHRWLK--GGVVLKED-------AL-------PGQKTEFKVD--SDDQWGEYSCVFLPE--PMGTAN 77 (184)
T ss_dssp EEEEEESCSSCCCEEEEES--SSEEEECT-------TC-------CCSEEEEEEC--GGGCCEEEEEEEEST--TSCEEE
T ss_pred EEEECCCCCCCceEEEEEe--CCEEeecc-------cc-------cCCcEEEEEe--chhhCeEEEEEEECC--cCcEEE
Confidence 689999887 5 899998 33333211 10 1124456666 689999999999653 235566
Q ss_pred EEEEcCC------CceEeeCCCeEEEecCC--CC-ceeEEEEe---CCCe---------EEEecCCCCceEEEEecccC-
Q psy3125 78 LNVDDRG------RGARLSAGPLLNFAFPD--LL-TTNIYTYT---GDAR---------FSVIHPQNSDEWNMKIDYAQ- 135 (163)
Q Consensus 78 l~V~~~~------~~~~v~~~~~~~~~~~~--~~-~~~~~~~~---~~~~---------~~~~~~~~~~~~~L~i~~v~- 135 (163)
|.|..++ ....+..|..+.+.|.. .+ .+.+.|++ ++.. +.+.. ......|.|.+++
T Consensus 78 l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--SQGRSELHIENLNM 155 (184)
T ss_dssp EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--ETTEEEEEECSCCT
T ss_pred EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--cCCeeEEEEeeccc
Confidence 7776553 23346678889999964 34 46788988 3332 22221 1234579999999
Q ss_pred cCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 136 KRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 136 ~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
.+|+|.|+|.| |..|..+..+.|.|+++
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~r 184 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVRSH 184 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC--
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEecC
Confidence 99999999999 99999999999999874
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=119.16 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=96.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc-CCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+|. +..+ ...|+.+.........+|.|.+++. +|+|.|+|.+.+ .+..+..+.
T Consensus 26 l~C~~~g~p~~~i~W~k~--g~~i--------~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 95 (304)
T 2yd9_A 26 FVCQATGDPKPRVTWNKK--GKKV--------NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAK 95 (304)
T ss_dssp EEEEEECSSCCEEEEC-----------------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEE
T ss_pred EEEEEEEeCCCeEEEEEC--CEEC--------CCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEE
Confidence 689999999 99999982 2222 2345555443334458899999998 999999999944 455566777
Q ss_pred EEEEcC-------------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC----CCceEEEEecccCcCC
Q psy3125 78 LNVDDR-------------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ----NSDEWNMKIDYAQKRD 138 (163)
Q Consensus 78 l~V~~~-------------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D 138 (163)
|.|... +....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|
T Consensus 96 l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 175 (304)
T 2yd9_A 96 LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETD 175 (304)
T ss_dssp EEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGG
T ss_pred EEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCccc
Confidence 888753 122356678888898863 445678999876533211100 0112369999999999
Q ss_pred CeeEEEEc-CCCCCcc
Q psy3125 139 AGIYECQV-NTEPKMN 153 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~ 153 (163)
+|.|+|.| |..+...
T Consensus 176 ~G~Y~C~a~n~~g~~~ 191 (304)
T 2yd9_A 176 QGKYECVATNSAGVRY 191 (304)
T ss_dssp CEEEEEEEEETTEEEE
T ss_pred CEEEEEEEEeCCCCEE
Confidence 99999999 7666443
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=114.78 Aligned_cols=145 Identities=16% Similarity=0.258 Sum_probs=96.1
Q ss_pred CceEEecCC-----CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE- 69 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~- 69 (163)
|.|.+.+.+ +.|.|+|.+.. ..+........ ..+||.+.. ..+.++|.|.+++.+|+|.|+|.+.+.
T Consensus 21 L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 98 (240)
T 1moe_A 21 MSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQTNED 98 (240)
T ss_dssp EEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEcCCChhhCEEEEEEEccCC
Confidence 679998874 78999996422 12221111111 246888865 346889999999999999999999553
Q ss_pred CC-eeEEEEEEEEcCC------------CceEeeCCCeEEEecCCC--C--ceeEEEEeCC-------------------
Q psy3125 70 PK-MNMAIMLNVDDRG------------RGARLSAGPLLNFAFPDL--L--TTNIYTYTGD------------------- 113 (163)
Q Consensus 70 ~~-~~~~~~l~V~~~~------------~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~------------------- 113 (163)
+. ....+.|.|..++ ....+..|..+.+.|... + ...+.|++..
T Consensus 99 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 178 (240)
T 1moe_A 99 PYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSK 178 (240)
T ss_dssp SCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEE
T ss_pred ceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccc
Confidence 22 3445567776532 223566788899999642 2 3578898741
Q ss_pred ------CeEEEecCCCCceEEEEecccCcCCCeeEEEEcC
Q psy3125 114 ------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147 (163)
Q Consensus 114 ------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 147 (163)
.|+.+..........|.|.+++.+|+|.|+|.|.
T Consensus 179 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 218 (240)
T 1moe_A 179 YVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF 218 (240)
T ss_dssp ECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred cCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEE
Confidence 1233322222345679999999999999999993
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=111.96 Aligned_cols=144 Identities=12% Similarity=0.187 Sum_probs=95.1
Q ss_pred CC-CcEEEEEe-cCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe--eEEEEEEE
Q psy3125 8 LG-RPVSWMRK-RDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM--NMAIMLNV 80 (163)
Q Consensus 8 ~~-~~v~W~k~-~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~--~~~~~l~V 80 (163)
.+ +.|.|+|. ++..+... +...+..++|+.+.. +++|.|.+++.+|+|.|+|++.+ .+.. ...+.|.|
T Consensus 28 ~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~-----ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V 102 (182)
T 1hnf_A 28 DDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI 102 (182)
T ss_dssp SSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECT-----TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECC-----CCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEE
Confidence 44 78999983 23333221 111223467888764 34799999999999999999944 3333 35677888
Q ss_pred EcCCCceEeeC-CCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 81 DDRGRGARLSA-GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 81 ~~~~~~~~v~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
.++...+.+.. +..+.+.|.. .+.+.+.|++++..+. .. ...|.+.. ..+|+|.|+|.| |..+..+...
T Consensus 103 ~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~~-----~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~ 175 (182)
T 1hnf_A 103 QERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLK-LS-----QRVITHKW-TTSLSAKFKCTAGNKVSKESSVE 175 (182)
T ss_dssp ECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEE-EE-----SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEE
T ss_pred cCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECC-CC-----CcEEEEec-ccCCCcEEEEEEEeCCCCcEEcc
Confidence 87643333332 3367888864 3467889999888662 11 11133333 578999999999 8888888888
Q ss_pred EEEEecC
Q psy3125 157 MLNVDGK 163 (163)
Q Consensus 157 ~L~V~~~ 163 (163)
.+...+|
T Consensus 176 ~~~c~~~ 182 (182)
T 1hnf_A 176 PVSCPEK 182 (182)
T ss_dssp EEEECCC
T ss_pred eecCCCC
Confidence 8776554
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=120.44 Aligned_cols=162 Identities=15% Similarity=0.270 Sum_probs=100.0
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEe-c---ce-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTT-N---IY-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~-~---~~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.. ..+.. . .. .. ...+|+.+......+.++|.|.+++.+|+|.|+|.+.
T Consensus 42 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 121 (291)
T 2gki_A 42 MSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARG 121 (291)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEe
Confidence 689999875 79999996422 11111 0 00 00 1246887765333457899999999999999999995
Q ss_pred CCC----C--eeEEEEEEEEcC----------------------CCceEeeCCCeEEEecCCC--Cce------eEEEEe
Q psy3125 68 TEP----K--MNMAIMLNVDDR----------------------GRGARLSAGPLLNFAFPDL--LTT------NIYTYT 111 (163)
Q Consensus 68 ~~~----~--~~~~~~l~V~~~----------------------~~~~~v~~~~~~~~~~~~~--~~~------~~~~~~ 111 (163)
+.. . ....+.|.|..+ +....+..|..+.+.|... +.. .+.|++
T Consensus 122 ~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k 201 (291)
T 2gki_A 122 AYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQ 201 (291)
T ss_dssp CGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEE
T ss_pred ccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEE
Confidence 532 1 122346666651 2233577889999999642 222 788987
Q ss_pred CC--C--eEEEecC--------------CCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEec
Q psy3125 112 GD--A--RFSVIHP--------------QNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 112 ~~--~--~~~~~~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~~ 162 (163)
.. . .+.+... .......|.|.+++.+|+|.|+|.| +... .......|.|++
T Consensus 202 ~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~ 272 (291)
T 2gki_A 202 QKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKH 272 (291)
T ss_dssp ECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 52 1 2211100 0123457999999999999999999 5321 122344566554
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-19 Score=118.85 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=92.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~ 77 (163)
|.|.+.+.++.+.|+|.+.. .. ....+|.|.+++.+|+|.|+|.+.+.. ..+..+.
T Consensus 27 L~C~~~~~~~~~~W~k~g~~----------------~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 85 (184)
T 2gi7_A 27 LRCQGPPGVDLYRLEKLSSS----------------RY-----QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLE 85 (184)
T ss_dssp EEEECSTTCSEEEEEETTTC----------------CE-----ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEE
T ss_pred EEEeCCCCCCEEEEEECCcc----------------cc-----CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEE
Confidence 67999883399999983211 00 124579999999999999999995432 2345567
Q ss_pred EEEEcCCC--------ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDRGR--------GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~~~--------~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|..... ...+..|..+.+.|... ......|++++..+............|.|.+++.+|+|.|+|.| |
T Consensus 86 l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 165 (184)
T 2gi7_A 86 LVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165 (184)
T ss_dssp EEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEEC
T ss_pred EEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEe
Confidence 77754311 22345678899999743 23577888876533211111123456999999999999999999 6
Q ss_pred CCC-----CccEEEEEEE
Q psy3125 148 TEP-----KMNMAIMLNV 160 (163)
Q Consensus 148 ~~~-----~~~~~~~L~V 160 (163)
..+ ..+..+.|.|
T Consensus 166 ~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 166 SRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp TTSTTBCCCCCCCEEEEC
T ss_pred CCCCcccCCCCCcEEEEe
Confidence 543 2466777766
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=120.82 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=105.4
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CC-CCeeEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TE-PKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~-~~~~~~~ 76 (163)
|.|.+.+.+ +. +.|++.++.. .....++.+.. +.+|.|.+++.+|+|.|+|.+. +. ...+..+
T Consensus 109 L~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~ 175 (289)
T 3ejj_X 109 LPCLITDPALKDSVSLMREGGRQ--------VLRKTVYFFSP-----WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175 (289)
T ss_dssp ECEEESCGGGGGSEEEEEGGGEE--------CCTTCCEEEET-----TTEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred eEEEccCCCcceEEEEEecCCee--------cCCCccEEECC-----CCCEEEeecccccCEEEEEEEEeCCCccccccE
Confidence 579999887 44 9999743222 23355666653 3459999999999999999995 32 2345667
Q ss_pred EEEEEcC---C-------CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEe------cCCCCceEEEEecccCcC
Q psy3125 77 MLNVDDR---G-------RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVI------HPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 77 ~l~V~~~---~-------~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~ 137 (163)
.|.|... + ....+..|..+.+.|.. .+.+.+.|++++..+... .........|.|.+++.+
T Consensus 176 ~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 255 (289)
T 3ejj_X 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ 255 (289)
T ss_dssp EEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSS
T ss_pred EEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeeccc
Confidence 7887742 1 22234568888899963 456788999886533211 111122567999999999
Q ss_pred CCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 138 DAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.|+|.| |..|..+.++.|.+..
T Consensus 256 d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 256 DAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred CCEEEEEEEEcCCCCccccEEEEEEe
Confidence 999999999 9999999999998864
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=114.55 Aligned_cols=146 Identities=14% Similarity=0.229 Sum_probs=94.3
Q ss_pred CceEEecCC-------CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-------RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-------~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.+.+ ..+........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 25 L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 102 (264)
T 2gjj_A 25 MTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDFTLTIGSVKAEDLAVYYCQQYS 102 (264)
T ss_dssp EEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEEEEEECCCCHHHCEEEEEEEec
Confidence 679998774 68999986422 12211111111 246888764 34578999999999999999999954
Q ss_pred CCC--eeEEEEEEEEcCC-------------------------CceEeeCCCeEEEecCCC--C--ceeEEEEeCC--C-
Q psy3125 69 EPK--MNMAIMLNVDDRG-------------------------RGARLSAGPLLNFAFPDL--L--TTNIYTYTGD--A- 114 (163)
Q Consensus 69 ~~~--~~~~~~l~V~~~~-------------------------~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~--~- 114 (163)
... ....+.|.|..++ +...+..|..+.+.|... + ...+.|++.. .
T Consensus 103 ~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~ 182 (264)
T 2gjj_A 103 NYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKS 182 (264)
T ss_dssp SSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSC
T ss_pred CCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCC
Confidence 322 2334567776542 122456788899999632 2 2578888753 1
Q ss_pred -eE---------------------EEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 115 -RF---------------------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 115 -~~---------------------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.+ .+..........|.|.+++.+|+|.|+|.| |.
T Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 183 PEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp CEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 11 111111234568999999999999999999 64
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=117.06 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=98.8
Q ss_pred CceE-EecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee---
Q psy3125 1 MACT-VMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN--- 73 (163)
Q Consensus 1 l~C~-~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~--- 73 (163)
|.|. +.+.| +.|.|+|.+..... ..+.+..... .+.+|.|.+++.+|+|.|+|.+.+ .....
T Consensus 28 L~C~~~~~~p~~~~v~W~~~~~~~~~-------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 96 (201)
T 3s97_C 28 LLCDPPYHFPDDLSYRWLLNEFPVFI-------TMDKRRFVSQ----TNGNLYIANVEASDKGNYSCFVSSPSITKSVFS 96 (201)
T ss_dssp ECCCCCSEESSCCEEEEEESSTTCBC-------CCSSSEEECT----TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEEC
T ss_pred EeccccccCCCceEEEEEECCceeee-------eeCCCeEEEc----CCCeEEECcCCcccCeEEEEEEEecCCCcchhh
Confidence 5788 77776 79999983322111 1223333332 245699999999999999999954 22221
Q ss_pred EEEEEEEEc-------------CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCC
Q psy3125 74 MAIMLNVDD-------------RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 74 ~~~~l~V~~-------------~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
..+.+.+.. ......+..|..+.+.|.. .+.+.+.|++++..+............|.|.+++.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 176 (201)
T 3s97_C 97 KFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLED 176 (201)
T ss_dssp CCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGG
T ss_pred cccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhh
Confidence 222333221 1224556778888999963 3456888988876332100001123469999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|+|.| |..|..+..+.|.|+.
T Consensus 177 ~G~Y~C~a~n~~g~~~~~~~l~V~a 201 (201)
T 3s97_C 177 EGIYECEAENIRGKDKHQARIYVQA 201 (201)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CEEEEEEEEecCCceeeeEEEEEeC
Confidence 99999999 9899999999999863
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=122.04 Aligned_cols=150 Identities=14% Similarity=0.246 Sum_probs=97.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CCee-EEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PKMN-MAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~~~-~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+.... ...|+.... +.+|.|.+++.+|+|.|+|.+.+. +... ....
T Consensus 128 l~C~~~g~p~~~v~W~k--~~~~~~~~~----~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 196 (304)
T 2yd9_A 128 MLCAASGNPDPEITWFK--DFLPVDPSA----SNGRIKQLR-----SGALQIESSEETDQGKYECVATNSAGVRYSSPAN 196 (304)
T ss_dssp ECCEEECSSCCEEEEEE--TTEECCGGG----GTTSEEECT-----TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred EEEECccCCCCeEEEEE--CCEECcCCC----CcceEEeCC-----CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEE
Confidence 579999999 9999998 333222110 122443322 337999999999999999999543 2222 1244
Q ss_pred EEEEcC---------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 78 LNVDDR---------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 78 l~V~~~---------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|.|... +....+..|..+.+.|.. .+.+.+.|++++..+............|.|.++ +|+|.|+|.|
T Consensus 197 l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a 274 (304)
T 2yd9_A 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVA 274 (304)
T ss_dssp EEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEE
T ss_pred EEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEE
Confidence 444321 223346678889999963 345678899887644322222233455777766 6999999999
Q ss_pred -CCCCCccEEEEEEEecC
Q psy3125 147 -NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 147 -~~~~~~~~~~~L~V~~~ 163 (163)
|..|..+..+.|.|+++
T Consensus 275 ~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 275 MSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp EETTEEEEEEEEEC----
T ss_pred EeCCCcEEEEEEEEEecC
Confidence 99999999999998763
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=124.37 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=100.0
Q ss_pred CceEEecC-----------C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-----------G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-----------~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + +.|.|+|.+....+...........|+... +.+|.|.+++.+|+|.|+|.+.+
T Consensus 27 L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~n 100 (349)
T 4dep_C 27 IKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE------KDVLWFRPTLLNDTGNYTCMLRN 100 (349)
T ss_dssp EECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE------TTEEEESSCCGGGCEEEEEEEEC
T ss_pred EEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec------CCEEEEccCChhhCEEEEEEEec
Confidence 57888863 3 899999854211000000000123344433 23699999999999999999954
Q ss_pred -CCCeeEEEEEEEEcCCC----------ceEeeCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCCCCceEEEE
Q psy3125 69 -EPKMNMAIMLNVDDRGR----------GARLSAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQNSDEWNMK 130 (163)
Q Consensus 69 -~~~~~~~~~l~V~~~~~----------~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 130 (163)
.+.....+.|.|..++. ...+..|..+.+.|.. .+.+.+.|++++..+............|.
T Consensus 101 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~ 180 (349)
T 4dep_C 101 TTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLS 180 (349)
T ss_dssp SSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEE
T ss_pred CCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEE
Confidence 44556677888886532 2245678889999963 45678899987653311000001124599
Q ss_pred ecccCcCCCeeEEEEc-CCC-CCc---cEEEEEEEec
Q psy3125 131 IDYAQKRDAGIYECQV-NTE-PKM---NMAIMLNVDG 162 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~-~~~---~~~~~L~V~~ 162 (163)
|.+++.+|+|.|+|.| |.. +.. +..+.|.|.+
T Consensus 181 i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~ 217 (349)
T 4dep_C 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217 (349)
T ss_dssp EESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence 9999999999999999 654 443 6777777754
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=113.03 Aligned_cols=156 Identities=10% Similarity=0.151 Sum_probs=98.8
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C-e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K-M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~-~ 72 (163)
|.|.+.+.+ +.|.|+|.+.+. .+........ ..+|+.+.. ..+..+|.|.+++.+|+|.|+|++.+.. . .
T Consensus 21 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 98 (213)
T 3d9a_L 21 LSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQSNSWPYTF 98 (213)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChhhCEEEEEeeecCCccee
Confidence 689999998 999999854321 1222211111 236887775 3457899999999999999999995432 2 2
Q ss_pred eEEEEEEEEcC--CCceEee-------CCCeEEEecCC---CCce-eEEEEeCCCeEEEe------cCC-CCc----eEE
Q psy3125 73 NMAIMLNVDDR--GRGARLS-------AGPLLNFAFPD---LLTT-NIYTYTGDARFSVI------HPQ-NSD----EWN 128 (163)
Q Consensus 73 ~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~------~~~-~~~----~~~ 128 (163)
...+.|.|... ++.+.+. .|..+.+.|.. .+.. .+.|++++..+... ... ... ...
T Consensus 99 ~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (213)
T 3d9a_L 99 GGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSST 178 (213)
T ss_dssp CCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEE
T ss_pred CCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEE
Confidence 23446777643 2222221 35688899964 2232 68899887643211 001 111 347
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
|.|.+++.+|+|.|+|.| |..........+
T Consensus 179 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 179 LTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp EEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred EEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 999999999999999999 765554433333
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-18 Score=120.17 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=102.7
Q ss_pred CceEEecC--C-CcEEEEEecCC----eeEEec-c-----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL----HILTTN-I-----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~----~~~~~~-~-----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + +.|.|+|.+.. .++... . ......+||.+..+...+.++|.|.+++.+|+|.|+|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 99 (280)
T 3fku_X 20 VSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARS 99 (280)
T ss_dssp EEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEEC
T ss_pred EEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 68999885 4 89999985322 122211 0 0111246888885445668899999999999999999995
Q ss_pred CC----------CCeeEEEEEEEEc---------------C-----CCceEeeCCCeEEEecCCCC----ceeEEEEeCC
Q psy3125 68 TE----------PKMNMAIMLNVDD---------------R-----GRGARLSAGPLLNFAFPDLL----TTNIYTYTGD 113 (163)
Q Consensus 68 ~~----------~~~~~~~~l~V~~---------------~-----~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~ 113 (163)
+. ......+.|.|.. + ++...+..|..+.+.|.... ...+.|++..
T Consensus 100 ~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~ 179 (280)
T 3fku_X 100 PSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQH 179 (280)
T ss_dssp SSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCCCCCCTTCCEEEEEC
T ss_pred cCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecCCCCCCceEEEEEEC
Confidence 53 1123345566655 1 12256778899999996543 3678887631
Q ss_pred --------------------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC---ccEEEEEEEe
Q psy3125 114 --------------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK---MNMAIMLNVD 161 (163)
Q Consensus 114 --------------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~---~~~~~~L~V~ 161 (163)
.|+.+.. ......|.|.+++.+|+|.|+|.+ +..+. ....+.|.|.
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~ 249 (280)
T 3fku_X 180 QGHPPKLLSYRNNDRPSGISERFSASR--SGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVL 249 (280)
T ss_dssp SSSCCEESCCTTCCCCSSSCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC
T ss_pred CCCCCEEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEEEEEC
Confidence 2233222 133567999999999999999999 54311 2334456654
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=110.24 Aligned_cols=135 Identities=13% Similarity=0.196 Sum_probs=96.6
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ +.+.|+| ++..+. . ....+.|.+++.+|+|.|+|.+.+ ...+..+.|
T Consensus 24 l~C~~~~~p~~~~~~W~~--~g~~~~-------~------------~~~~~~~~~~~~~d~G~Y~C~~~~-~~~s~~~~l 81 (170)
T 3ry4_A 24 LTCQGARSPESDSIQWFH--NGNLIP-------T------------HTQPSYRFKANNNDSGEYTCQTGQ-TSLSDPVHL 81 (170)
T ss_dssp EEEESCCCSSSSCEEEEE--TTEECT-------T------------CCSSEEEEECCGGGCEEEEEEETT-SBCCCCEEE
T ss_pred EEEEecCCCCcceEEEEE--CCeEcc-------c------------CccceEEEecccccCeEEEEEEeC-CCceEeEEE
Confidence 579999886 7999998 322211 1 122367889999999999999954 233445667
Q ss_pred EEEcC-----CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDR-----GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~-----~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..+ .+...+..|..+.+.|.. .+...+.|++++..+.... ....|.|.+++.+|+|.|+|.| |..
T Consensus 82 ~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~ 157 (170)
T 3ry4_A 82 TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGY 157 (170)
T ss_dssp EEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----SCCEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----CCCeEEEEeccccCCEEEEEEEEeCc
Confidence 77654 233456678889999964 2347889998877655432 2345999999999999999999 777
Q ss_pred CC-ccEEEEEEEe
Q psy3125 150 PK-MNMAIMLNVD 161 (163)
Q Consensus 150 ~~-~~~~~~L~V~ 161 (163)
+. .+..+.|.|+
T Consensus 158 g~~~s~~~~l~V~ 170 (170)
T 3ry4_A 158 TLFSSKPVTITVQ 170 (170)
T ss_dssp EEEECCCEEEEEC
T ss_pred CccccccEEEEEC
Confidence 65 6677787774
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=113.59 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=96.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecce----EecCC--CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCe
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIY----TYTGD--ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM 72 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~----~~~~~--~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 72 (163)
|.|.+... + +.|.|+|.++..+...... .+... +|+.+.. .+++|.|.+++.+|+|.|+|++......
T Consensus 19 L~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~----~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 94 (180)
T 2dru_A 19 LTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK----TNGALRIYNVSKEDRGDYYMRMLHETED 94 (180)
T ss_dssp ECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECT----TTCCEEECSCCGGGCEEEEEEEESSSEE
T ss_pred EeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeC----CCccEEEcCCCHHHCeEEEEEEEcCCeE
Confidence 57887553 3 8999998433334322211 11122 6777732 3677999999999999999999654455
Q ss_pred eEEEEEEEEcCCCceEe-eCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 73 NMAIMLNVDDRGRGARL-SAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 73 ~~~~~l~V~~~~~~~~v-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
...+.|.|.++...+.+ ..+..+.+.|.. .+.+.+.|++++..+. . .....|.+.. .+|+|.|+|.| |.
T Consensus 95 ~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~-~----~~~~~l~~~~--~~d~g~Y~C~a~N~ 167 (180)
T 2dru_A 95 QWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-S----LRQKTMSYQW--TNLRAPFKCKAVNR 167 (180)
T ss_dssp EEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEE-E----ESSSEEEEEC--SCCSSCEEEEEEET
T ss_pred EEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECc-C----CCCCEEEEEE--hhcCccEEEEEecC
Confidence 67778999876433332 234558888864 2567889998887654 1 1123466633 78999999999 77
Q ss_pred CCCccEEEEE
Q psy3125 149 EPKMNMAIML 158 (163)
Q Consensus 149 ~~~~~~~~~L 158 (163)
.+..+..+.+
T Consensus 168 ~~~~~~~~~i 177 (180)
T 2dru_A 168 VSQESEMEVV 177 (180)
T ss_dssp TEEEEEEECC
T ss_pred cCccccceeE
Confidence 7766665544
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=117.22 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=97.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCe--EEEEEcccCcCCCeeEEEEeeCC-CCe-eEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE--WNMKIDYAQKRDAGIYECQVNTE-PKM-NMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~-~~~-~~~ 75 (163)
|.|.+.+.| +.|.|+| ++..+..... ....+..... .... ..|.|.+++.+|+|.|+|.+.+. +.. +..
T Consensus 29 l~C~~~~~p~~~v~W~~--~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 102 (212)
T 2v9r_A 29 LNCKAEGRPTPTIEWYK--GGERVETDKD--DPRSHRMLLP--SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102 (212)
T ss_dssp ECCEEEEESCCEEEEEE--TTEECCCTTT--CTTCSEEECT--TSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCC
T ss_pred EEEEcCCCCCCEEEEEE--CCEEeecccc--ccccceEEec--CCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecc
Confidence 679999988 9999998 3322221110 0001111111 1111 13556788999999999999543 222 345
Q ss_pred EEEEEEcC-------CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC-CCCceEEEEecccCcCCCeeEEE
Q psy3125 76 IMLNVDDR-------GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 76 ~~l~V~~~-------~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
+.|.|... +....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|
T Consensus 103 ~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 182 (212)
T 2v9r_A 103 ASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182 (212)
T ss_dssp EEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEE
T ss_pred eEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEE
Confidence 56666542 234567788899999964 34568889887664321110 00112369999999999999999
Q ss_pred Ec-CCCCCcc-EEEEEEEecC
Q psy3125 145 QV-NTEPKMN-MAIMLNVDGK 163 (163)
Q Consensus 145 ~a-~~~~~~~-~~~~L~V~~~ 163 (163)
.| |..|... ..+.|.|..+
T Consensus 183 ~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 183 VGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp EEEETTEEEECCCEEEEEEC-
T ss_pred EEecccCceecceEEEEEEeC
Confidence 99 8777654 3588888753
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=122.27 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=99.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+ ..+ . . ...+|.|.+++.+|+|.|+|.+.+ .......+.|
T Consensus 116 l~C~~~~~p~~~v~W~~~~-~~~--------------~-~-----~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l 174 (363)
T 1wio_A 116 LTLESPPGSSPSVQCRSPR-GKN--------------I-Q-----GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174 (363)
T ss_dssp EEEECCTTCCCCEEEECSS-SCE--------------E-E-----ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEE
T ss_pred EEEEcCCCCCCeEEEEcCC-Ccc--------------c-c-----cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEE
Confidence 679999988 999999732 111 1 1 245699999999999999999943 3344556677
Q ss_pred EEEcCCC---ceEeeCCCeEEEecCC-------CCceeEEEEeCCCe--------------EEEecC--------CCCce
Q psy3125 79 NVDDRGR---GARLSAGPLLNFAFPD-------LLTTNIYTYTGDAR--------------FSVIHP--------QNSDE 126 (163)
Q Consensus 79 ~V~~~~~---~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------------~~~~~~--------~~~~~ 126 (163)
.|...+. ...+..|..+.+.|.. .+.+.+.|++++.. +.+... .....
T Consensus 175 ~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (363)
T 1wio_A 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP 254 (363)
T ss_dssp CEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSS
T ss_pred EEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCc
Confidence 7775543 2356678899999953 23567889876542 211110 01224
Q ss_pred EEEEecccCcCCCeeEEEEc-CC--CCCccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NT--EPKMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~--~~~~~~~~~L~V~ 161 (163)
..|.|.+++.+|+|.|+|.| |. .|..+..+.|.|.
T Consensus 255 ~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~ 292 (363)
T 1wio_A 255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292 (363)
T ss_dssp CEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred eEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence 47999999999999999999 88 7888889888875
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=115.45 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=89.3
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~ 77 (163)
|.|.+.+.+..+.|+|.+. .+... .+ .........+|.|.+++.+|+|.|+|.+.+.. ..+..+.
T Consensus 24 L~C~~~~~~~~~~W~k~g~--~~~~~-------~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 91 (196)
T 2d3v_A 24 IRCQGTLEAQEYRLVKEGS--PEPWD-------TQ---NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE 91 (196)
T ss_dssp EEEECCTTCCEEEEEETTC--SSCSE-------EE---CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEE
T ss_pred EEEeCCCCCcEEEEEECCC--CCCcc-------cc---cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEE
Confidence 6799988878999998322 11100 00 00012357789999999999999999995422 2245567
Q ss_pred EEEEcCCC--------ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEe------cCCCCceEEEEecccCcCCCeeE
Q psy3125 78 LNVDDRGR--------GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVI------HPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 78 l~V~~~~~--------~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
|.|..... ...+..|..+.+.|... ....+.|++++..+... .........|.|.+++.+|+|.|
T Consensus 92 l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 171 (196)
T 2d3v_A 92 LVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWML 171 (196)
T ss_dssp EEEECSSCCCEEEC-----------CEEEEEESSCCSEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEE
T ss_pred EEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCCEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeE
Confidence 77776321 12455678888999632 22678898887643211 11122347899999999999999
Q ss_pred EEEc-CCCC-----CccEEEEEEE
Q psy3125 143 ECQV-NTEP-----KMNMAIMLNV 160 (163)
Q Consensus 143 ~C~a-~~~~-----~~~~~~~L~V 160 (163)
+|.| |..+ ..+..+.|.|
T Consensus 172 ~C~a~n~~~~~~~s~~S~~~~l~V 195 (196)
T 2d3v_A 172 RCYGSRRHILQVWSEPSDLLEIPV 195 (196)
T ss_dssp EEEEEETTEEEEECCCCCCEEECC
T ss_pred EEEEEccCCCCccCCCCccEEEEe
Confidence 9999 6543 3455666655
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=114.16 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~ 77 (163)
|.|.+.+.+..+.|+| ++..+... ..+. .......+|.|.+++.+|+|.|+|++.+.. ..+..+.
T Consensus 26 L~C~~~~~~~~~~w~k--~g~~~~~~------~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~ 93 (242)
T 1p6f_A 26 ICCQGNYGAVEYQLHF--EGSLFAVD------RPKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLD 93 (242)
T ss_dssp EEEECCTTCCEEEEEE--TTEEEEEE------CCSS----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEE
T ss_pred EEEeeCCCCcEEEEEE--CCCccccc------cccc----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceE
Confidence 5798876558899998 33222110 0000 012346789999999999999999995421 2345667
Q ss_pred EEEEcCC--------CceEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDRG--------RGARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~~--------~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|.... +...+..|..+.+.|.... .....|++++..+............|.|.+++.+|+|.|+|.| +
T Consensus 94 L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n 173 (242)
T 1p6f_A 94 LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 173 (242)
T ss_dssp EEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEE
T ss_pred EEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEEC
Confidence 7776421 1235677899999997533 3467888887654432212344677999999999999999999 5
Q ss_pred CC---CCccEEEEEEEec
Q psy3125 148 TE---PKMNMAIMLNVDG 162 (163)
Q Consensus 148 ~~---~~~~~~~~L~V~~ 162 (163)
.. ...+..+.|.|.+
T Consensus 174 ~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 174 NNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp ETTEECCCCCCEEEEEEC
T ss_pred CCCcccCCCCCEEEEEec
Confidence 43 3567788888876
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-18 Score=121.17 Aligned_cols=147 Identities=15% Similarity=0.224 Sum_probs=102.8
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC---CCCe---
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT---EPKM--- 72 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~---~~~~--- 72 (163)
|.|.+.+.| +.|.|+| ++..+. ..+.++... +.+|.|.+++.+|+|.|+|.+.+ .+..
T Consensus 148 L~C~~~g~p~~~~i~W~k--~~~~l~------~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~ 213 (329)
T 3oq3_B 148 LYCGILYAKHYNNITWYK--NNQELI------IDGTKYSQS------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIV 213 (329)
T ss_dssp EECCCCSCCCCCEEEEEE--TTEECC------CSSSSEEEE------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEE
T ss_pred EEeccCCCCCCceEEEEE--CCccCC------CCCceEecC------CCEEEEeecChhhCEEEEEEEEecccCCCceeE
Confidence 579999988 8999998 332221 123455544 24699999999999999999953 2222
Q ss_pred -eEEEEEEEEcCC---------CceEeeCCCeEEEecCCC--C---ce-eEEEEeCCCeEEEec---------CCCCceE
Q psy3125 73 -NMAIMLNVDDRG---------RGARLSAGPLLNFAFPDL--L---TT-NIYTYTGDARFSVIH---------PQNSDEW 127 (163)
Q Consensus 73 -~~~~~l~V~~~~---------~~~~v~~~~~~~~~~~~~--~---~~-~~~~~~~~~~~~~~~---------~~~~~~~ 127 (163)
+..+.|.|..++ ....+..|..+.+.|... + .+ .+.|++++..+.... .......
T Consensus 214 ~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~ 293 (329)
T 3oq3_B 214 VSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEA 293 (329)
T ss_dssp EEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEE
T ss_pred EEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEe
Confidence 233667777554 223566788899999632 2 34 678988766431110 0111356
Q ss_pred EEEecccCcCCCe-eEEEEc-CCCCCccEEEEEEEe
Q psy3125 128 NMKIDYAQKRDAG-IYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 128 ~L~i~~v~~~D~G-~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.|.|.+++.+|+| .|+|.| |..|..+..+.|.|+
T Consensus 294 ~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 294 TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp EEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence 7999999999999 999999 999999999999874
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=111.49 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=95.8
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~ 72 (163)
|.|.+.+.+ +.|.|+|.+.+ ..+....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+... .
T Consensus 20 L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 97 (210)
T 1lk3_L 20 ISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTF 97 (210)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeEEEEEEEcCCCcee
Confidence 689999998 99999985422 1122111111 1246888765 34578999999999999999999955322 2
Q ss_pred eEEEEEEEEcC--CCceEe-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEEE------ecCC-CC----ceEE
Q psy3125 73 NMAIMLNVDDR--GRGARL-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFSV------IHPQ-NS----DEWN 128 (163)
Q Consensus 73 ~~~~~l~V~~~--~~~~~v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~------~~~~-~~----~~~~ 128 (163)
...+.|.|... ++.+.+ ..|..+.+.|... +. ..+.|++++..+.. .... .. ....
T Consensus 98 ~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 177 (210)
T 1lk3_L 98 GAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSST 177 (210)
T ss_dssp CCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEE
T ss_pred CCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEE
Confidence 23446777643 122222 1367889999642 22 36889988654321 1111 11 1237
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
|.|.++..+|+|.|+|.| |.....
T Consensus 178 L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 178 LSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred EEEChHHhccCCcEEEEEEecCCCC
Confidence 999999999999999999 665433
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=115.86 Aligned_cols=158 Identities=10% Similarity=0.205 Sum_probs=100.0
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Ee--c----ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TT--N----IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~--~----~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.+ +.|.|+|.+.+. .+ .. + ..... ..+|+.+..+...++++|.|.+++.+|+|.|.|.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 99 (222)
T 1q9r_B 20 LSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCA 99 (222)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEE
Confidence 689999864 899999864321 11 11 1 11111 2468988765445688999999999999999999
Q ss_pred eeCCC------CeeEEEEEEEEcCC---CceE-------eeCCCeEEEecCCC---Cce-eEEEEeCCCeE-----EEec
Q psy3125 66 VNTEP------KMNMAIMLNVDDRG---RGAR-------LSAGPLLNFAFPDL---LTT-NIYTYTGDARF-----SVIH 120 (163)
Q Consensus 66 ~~~~~------~~~~~~~l~V~~~~---~~~~-------v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-----~~~~ 120 (163)
+.+.. .....+.|.|...+ +.+. +..|..+.+.|... +.+ .+.|+.++..+ ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~ 179 (222)
T 1q9r_B 100 RDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL 179 (222)
T ss_dssp ECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEE
T ss_pred EeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccc
Confidence 95532 23344567776421 1111 23577889999642 444 78888776431 1111
Q ss_pred CCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 121 PQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 121 ~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
..+ .....|.|.++..+| |.|+|.| |..+.......|+
T Consensus 180 ~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 180 QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 111 113469999999999 9999999 7766655554444
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=116.77 Aligned_cols=153 Identities=15% Similarity=0.230 Sum_probs=95.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CCe-eEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PKM-NMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~~-~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+.... ....++... .+.....|.|.+++.+|+|.|+|.+.+. +.. +..+.
T Consensus 29 L~C~~~g~p~~~v~W~~--~g~~~~~~~---~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~ 101 (217)
T 2vr9_A 29 LNCKVEGKPEPTIEWFK--DGEPVSTNE---KKSHRVQFK--DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101 (217)
T ss_dssp ECCEEECSSCCEEEEEE--TTEECCCSS---SSSSEEECT--TSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEcCCCCCCeEEEEE--CCcCccCCC---ccceeEEec--CCceEEEEEeccCCcccCceEEEEEecCCCccccccce
Confidence 689999988 9999998 333222110 011222211 1111223478999999999999999543 222 23445
Q ss_pred EEEEcC-------CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC----CC-----CceEEEEecccCcCC
Q psy3125 78 LNVDDR-------GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP----QN-----SDEWNMKIDYAQKRD 138 (163)
Q Consensus 78 l~V~~~-------~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~L~i~~v~~~D 138 (163)
|.|... +....+..|..+.+.|.. .+.+.+.|++++..+..... .. .....|.|.+++.+|
T Consensus 102 l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 181 (217)
T 2vr9_A 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPID 181 (217)
T ss_dssp EEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTT
T ss_pred EEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHH
Confidence 555432 234457788899999964 34567889987664431100 00 012369999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEE
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+|.|+|.| |..|....++.+-|
T Consensus 182 ~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 182 EGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp CEEEEEEEEETTEEEECCCEEEE
T ss_pred CeEEEEEEEcccceeccccEEEE
Confidence 99999999 88887665544433
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=123.32 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=106.2
Q ss_pred CceEEecCC-Cc-EEEEEecCCe-eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLH-ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+.| +. |.|+|.+... +.......+..+.++ ....+|.|.+++.+|+|.|+|.+. ..+.....+
T Consensus 231 L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 303 (524)
T 2ec8_A 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY-------ERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303 (524)
T ss_dssp EEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCE-------EEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEecCCCcEEEEEEeCCCCCccccccccccccCCcc-------ceEEEEEECCCCHHHCEEEEEEEEecCCceEEEE
Confidence 679999998 66 9999843221 111111111111111 135689999999999999999994 455556677
Q ss_pred EEEEEcCCC---------ceEeeCCCeEEEecCC--CCcee-EEEEeCCCeEEEec-----CCC----CceEEEEecccC
Q psy3125 77 MLNVDDRGR---------GARLSAGPLLNFAFPD--LLTTN-IYTYTGDARFSVIH-----PQN----SDEWNMKIDYAQ 135 (163)
Q Consensus 77 ~l~V~~~~~---------~~~v~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~-----~~~----~~~~~L~i~~v~ 135 (163)
.|.|..++. ...+..|..+.+.|.. .+.+. +.|++++..+.... ... .....|.|.+++
T Consensus 304 ~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 383 (524)
T 2ec8_A 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383 (524)
T ss_dssp EEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCC
T ss_pred EEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecC
Confidence 888876532 3456678889999963 23445 89998865332111 011 135689999999
Q ss_pred cCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 136 KRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 136 ~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 384 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 411 (524)
T 2ec8_A 384 GTEGGTYTFLVSNSDVNAAIAFNVYVNT 411 (524)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEECE
T ss_pred cccCeEEEEEEEecCceEEEEEEEEEec
Confidence 99999999999 9899999999999864
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=119.82 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=102.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C--eeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K--MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~--~~~~~ 76 (163)
|.|.+.+.| +.|.|+|.+ ..+.. ..+.|+.+.. +.+|.|.+++.+|+|.|+|.+.+.. . ....+
T Consensus 118 l~C~~~~~p~~~v~W~~~~-~~~~~------~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~ 185 (291)
T 2wim_A 118 VVCRVSSSPAPAVSWLYHN-EEVTT------ISDNRFAMLA-----NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 185 (291)
T ss_dssp ECCCCBCSSCCEEEEECC-----CB------CCCSSEEECT-----TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEccCCCCEEEEEECC-ccccc------cCCceEEEcc-----CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeE
Confidence 579999988 999999832 11111 1245666553 3359999999999999999995422 2 23455
Q ss_pred EEEEEcCCCc--------eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEE
Q psy3125 77 MLNVDDRGRG--------ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 77 ~l~V~~~~~~--------~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.|.|..++.. ..+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|
T Consensus 186 ~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 265 (291)
T 2wim_A 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265 (291)
T ss_dssp EEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEE
T ss_pred EEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEE
Confidence 6667665421 234568889999974 34567889887653321100 01223569999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+.++.|.|..
T Consensus 266 ~a~N~~G~~~~~~~l~v~~ 284 (291)
T 2wim_A 266 RATNKAGEDEKQAFLQVFV 284 (291)
T ss_dssp EEEETTEEEEEEEEEEC--
T ss_pred EEEECCCceeeeEEEEEEE
Confidence 99 9999999999998864
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=122.48 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=103.4
Q ss_pred CceE-EecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACT-VMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~-~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|. +.+.| +.|.|+|..+.... .......++.+.+. ..|.|.++..+|+|.|+|.+.+ .+..+..+.
T Consensus 155 l~C~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 225 (331)
T 3u83_A 155 ATCTSANGKPPSVVSWETRLKGEAE--YQEIRNPNGTVTVI-------SRYRLVPSREAHQQSLACIVNYHMDRFKESLT 225 (331)
T ss_dssp EEEEEEEEBSCCEEEEEESSCCEEE--EEEEECTTSCEEEE-------EEEEECCCGGGTTCEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCcCCceEEEEcCCCCccc--cceeECCCCcEEEE-------EEEEEEeccccCCCEEEEEEecCCCcceeeEE
Confidence 5797 88888 99999984322221 11112223344333 3599999999999999999944 445556666
Q ss_pred EEEEcCC-------CceEeeCCCeEEEecCC--CCcee-EEEEeCCCeEEEecCCCCceEEEEec-ccCcCCCeeEEEEc
Q psy3125 78 LNVDDRG-------RGARLSAGPLLNFAFPD--LLTTN-IYTYTGDARFSVIHPQNSDEWNMKID-YAQKRDAGIYECQV 146 (163)
Q Consensus 78 l~V~~~~-------~~~~v~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~-~v~~~D~G~Y~C~a 146 (163)
|.|..++ ....+..|..+.+.|.. .+.+. +.|++++..+.... ......|.|. +++.+|+|.|+|.|
T Consensus 226 l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~~~~~L~i~~~v~~~d~G~Y~C~a 303 (331)
T 3u83_A 226 LNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EAQNRTLFFKGPINYSLAGTYICEA 303 (331)
T ss_dssp CCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EEETTEEEECSCCCGGGCEEEEEEE
T ss_pred EEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--eecCcEEEEeCCCccccCeEEEEEE
Confidence 6665432 22335567888999963 34455 89998876442110 0112359999 99999999999999
Q ss_pred -CCCCCccEEEEEEEecC
Q psy3125 147 -NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 147 -~~~~~~~~~~~L~V~~~ 163 (163)
|..|..+..+.|.|.++
T Consensus 304 ~N~~G~~~~~~~l~V~~~ 321 (331)
T 3u83_A 304 TNPIGTRSGQVEVNITEA 321 (331)
T ss_dssp EETTEEEEEEEEECCBC-
T ss_pred EeccccceEEEEEEEecc
Confidence 99999999999999764
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=115.22 Aligned_cols=158 Identities=11% Similarity=0.175 Sum_probs=96.8
Q ss_pred CceEEecCC---CcEEEEEecCC-eeE---Ee----cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL-HIL---TT----NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~-~~~---~~----~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+ .+. .. +...+ ...+|+.+..+...++.+|.|.+++.+|+|.|+|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 99 (219)
T 1c1e_H 20 ISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARG 99 (219)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEe
Confidence 689999864 88999986422 221 10 01111 1247888875433457899999999999999999995
Q ss_pred CCC-----CeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCC---CCce-eEEEEeCCCeEEEec-----CCC
Q psy3125 68 TEP-----KMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPD---LLTT-NIYTYTGDARFSVIH-----PQN 123 (163)
Q Consensus 68 ~~~-----~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~-----~~~ 123 (163)
+.. .....+.|.|...+ +.+ .+..|..+.+.|.. .+.+ .+.|++++..+.... ..+
T Consensus 100 ~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~ 179 (219)
T 1c1e_H 100 TTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD 179 (219)
T ss_dssp ETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSS
T ss_pred ccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCC
Confidence 533 22235567776531 111 12357788999964 3445 788988765321110 011
Q ss_pred C--ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 124 S--DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 124 ~--~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
. ....|.|... ..|+|.|+|.| |..+.......|.
T Consensus 180 ~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 180 LYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp CEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred eEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEecC
Confidence 1 2346899444 44669999999 7766655554443
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=114.46 Aligned_cols=156 Identities=14% Similarity=0.228 Sum_probs=100.8
Q ss_pred CceEEecCC-CcEEEEEecC----CeeEEec--ce-Eec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRD----LHILTTN--IY-TYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~----~~~~~~~--~~-~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|...+.+ +.|.|+|.+. ..+.... .. ... ..+|+.+.. +.+|.|.+++.+|+|.|+|.+.+.
T Consensus 19 L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-----~~~L~i~~v~~~D~G~Y~C~~~~~ 93 (208)
T 3r4d_A 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQMITMKDMGVYTLDMTDE 93 (208)
T ss_dssp EEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-----TSCEEECSCCGGGCEEEEEEEECS
T ss_pred EEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-----CCeEEEccccccCCeEEEEEEEcc
Confidence 579977777 9999998421 1121110 00 000 134666553 346999999999999999999553
Q ss_pred --CCeeEEEEEEEEcCCCceE-------eeCCCeEEEecCCC-CceeEEEEeCCCeEEEecC--CCCceEEEEecccCcC
Q psy3125 70 --PKMNMAIMLNVDDRGRGAR-------LSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKR 137 (163)
Q Consensus 70 --~~~~~~~~l~V~~~~~~~~-------v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~ 137 (163)
......+.|.|..++..+. +..|..+.+.|... ..+.+.|++++..+..... .......|.|.+++.+
T Consensus 94 ~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~ 173 (208)
T 3r4d_A 94 NYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173 (208)
T ss_dssp SCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEEEETTTTEEEESSCCGG
T ss_pred cCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHH
Confidence 3455677788876532222 45677889999643 2358889887653321110 0012246999999999
Q ss_pred CCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 138 DAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
|+|.|+|.| |..|. .+..+.|.|.
T Consensus 174 d~G~Y~C~a~N~~g~~~s~~~~l~v~ 199 (208)
T 3r4d_A 174 DAGEYQCEISNPVSVRRSNSIKLDII 199 (208)
T ss_dssp GCEEEEEEEECTTCCEECCCEEECCC
T ss_pred hCeEEEEEEecCCCcccCCceeeeEE
Confidence 999999999 77664 4567777664
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=115.03 Aligned_cols=155 Identities=13% Similarity=0.168 Sum_probs=99.0
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEec-ceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTN-IYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~-~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.+ +.|.|+|.+.. ..+... ... ...++||.+.. ..++.+|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 44 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 121 (237)
T 3sob_L 44 ITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPEDFATYYCQQSYTTPPTF 121 (237)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEECCCChhhCeEEEEeeccCCceEE
Confidence 689999998 99999985422 112211 111 12356888774 3468899999999999999999995433 23
Q ss_pred eEEEEEEEEcCCCceEe--e-------CCCeEEEecCCC---C-ceeEEEEeCCCeEEE-----ec-C--CCC---ceEE
Q psy3125 73 NMAIMLNVDDRGRGARL--S-------AGPLLNFAFPDL---L-TTNIYTYTGDARFSV-----IH-P--QNS---DEWN 128 (163)
Q Consensus 73 ~~~~~l~V~~~~~~~~v--~-------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~-----~~-~--~~~---~~~~ 128 (163)
...+.|.|......+.+ . .|..+.+.|... + .+.+.|++++..+.. .. . ... ....
T Consensus 122 ~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~ 201 (237)
T 3sob_L 122 GQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSST 201 (237)
T ss_dssp CCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEE
T ss_pred cCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEE
Confidence 34456777553222222 1 245688888632 2 468899987654321 11 1 111 1356
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
|.|..+..+|+|.|+|.| |..........
T Consensus 202 L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 231 (237)
T 3sob_L 202 LTLSKADYEKHKVYACEVTHQGLSSPVTKS 231 (237)
T ss_dssp EEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred EEEcHHHccCCCcEEEEEeeCCCCCceeee
Confidence 999999999999999999 76654444333
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=119.05 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=103.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeCCCCe--eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNTEPKM--NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~~~~--~~~~ 76 (163)
|.|.+.+.+ +.|.|+++++..+ ..+.++.+.. +..|.|.+++.+|+| .|+|.+.+.... +..+
T Consensus 111 l~C~~~~p~~~~v~W~~~~g~~l--------~~~~~~~~~~-----~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~ 177 (290)
T 2o26_X 111 VRCPLTDPQVSQYSLIECDGKSL--------PTDLTFVPNP-----KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKF 177 (290)
T ss_dssp ECCCBSCCSCEEEEEEETTSCCC--------CTTCEEEEET-----TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCE
T ss_pred EeCcCCCCCCceEEEEeCCCcCC--------CCCCceeeCC-----CCCEEEecccHHHCCCEEEEEEEECCceEEeEEE
Confidence 579999866 8999976443322 2235555553 236999999999999 999999554322 3356
Q ss_pred EEEEEc----C------CCceEeeCCCeEEEecCC--CCcee-EEEEeCCCeE----EEec------C-CCCceEEEEec
Q psy3125 77 MLNVDD----R------GRGARLSAGPLLNFAFPD--LLTTN-IYTYTGDARF----SVIH------P-QNSDEWNMKID 132 (163)
Q Consensus 77 ~l~V~~----~------~~~~~v~~~~~~~~~~~~--~~~~~-~~~~~~~~~~----~~~~------~-~~~~~~~L~i~ 132 (163)
.|.|.. + +....+..|..+.+.|.. .+.+. +.|++++... .... . .......|.|.
T Consensus 178 ~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 257 (290)
T 2o26_X 178 TLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTIS 257 (290)
T ss_dssp EEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEES
T ss_pred EEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEc
Confidence 777762 1 122345678889999963 33443 8999887763 1111 0 11234679999
Q ss_pred ccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 133 YAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
+++.+|+|.|+|.| |..|..+..+.|.|..+
T Consensus 258 ~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 289 (290)
T 2o26_X 258 SARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289 (290)
T ss_dssp SCCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence 99999999999999 99999999999998764
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=113.11 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=102.0
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~ 76 (163)
|.|.+.+.+ +.|.|+|.++..+. ....|+.+... +....+|.|.+++.+|+|.|+|.+.+.. ..+..+
T Consensus 22 l~C~~~~~~~~~~i~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~ 93 (291)
T 1qz1_A 22 FLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV 93 (291)
T ss_dssp EEEEESSCCSCCEEEEECTTSCBCC-------SSCSSEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCCCCcEeEEECCCCeECc-------cCCceEEEEEc-CCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEE
Confidence 689999976 89999974333222 12456665532 2357889999999999999999995533 345666
Q ss_pred EEEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEE
Q psy3125 77 MLNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 77 ~l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.|.|..+ +....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.
T Consensus 94 ~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (291)
T 1qz1_A 94 NVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173 (291)
T ss_dssp EEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred EEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEE
Confidence 7777654 234457788889999963 445678999886543211000 01123599999999999999999
Q ss_pred c-CCCCC--ccEEEEEEEe
Q psy3125 146 V-NTEPK--MNMAIMLNVD 161 (163)
Q Consensus 146 a-~~~~~--~~~~~~L~V~ 161 (163)
| +..+. .+..+.|.|.
T Consensus 174 a~n~~~~~~~~~~~~l~v~ 192 (291)
T 1qz1_A 174 GRILARGEINFKDIQVIVN 192 (291)
T ss_dssp EEEGGGTEEEEEEEEEEEE
T ss_pred EEecCCCceeeEEEEEEEe
Confidence 9 54432 2345555553
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=127.09 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=104.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l 78 (163)
|.|.+.+.++.+.|+| ++.. +....|+.+.. ++.+|.|.+++.+|+|.|+|.+.+ .+. .+..+.|
T Consensus 487 l~C~~~~~~~~i~W~~--~g~~-------l~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l 553 (642)
T 1e07_A 487 FTCEPEAQNTTYLWWV--NGQS-------LPVSPRLQLSN----GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553 (642)
T ss_pred EEEECCCCCcEEEEEE--CCEe-------CCCCCcEEEcC----CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEE
Confidence 5799995339999998 3222 23345666553 245899999999999999999954 333 3445778
Q ss_pred EEEcCCC-------ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 79 NVDDRGR-------GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 79 ~V~~~~~-------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.|..++. ...+..|..+.+.|.. .+.+.+.|++++..+. . ...|.|.+++.+|+|.|+|.| |.
T Consensus 554 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~--~-----~~~L~i~~~~~~d~G~Y~C~a~N~ 626 (642)
T 1e07_A 554 DVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ--H-----TQVLFIAKITPNNNGTYACFVSNL 626 (642)
T ss_pred EEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECc--c-----CceEEECcccccCCeEEEEEEEec
Confidence 8875432 3356678889999963 4556889998876432 1 235999999999999999999 99
Q ss_pred CCCccEEEEEEEec
Q psy3125 149 EPKMNMAIMLNVDG 162 (163)
Q Consensus 149 ~~~~~~~~~L~V~~ 162 (163)
.|..+.++.|.|+.
T Consensus 627 ~G~~~~s~~l~V~v 640 (642)
T 1e07_A 627 ATGRNNSIVKSITV 640 (642)
T ss_pred ccCcceeEEEEEEE
Confidence 99998888888864
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=108.78 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=94.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~ 75 (163)
|.|.+.. | +.|.|+|.+. .+......... ..+|+.+.. .+.+|.|.+++.+|+|.|+|++.+... ...
T Consensus 15 L~c~~~~-~~~~i~W~~~~~-~i~~~~~~~~~~~~~~~~R~~~~~----~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~ 87 (171)
T 1ccz_A 15 FHVPSNV-PLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYLDT----VSGSLTIYNLTSSDEDEYEMESPNITD-TMK 87 (171)
T ss_dssp ECCCCSS-CCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEECT----TTCCEEECSCCGGGCEEEEEECTTCCS-CEE
T ss_pred EcCCCCC-CcceEEEEeCCc-EEEEEcCCCcccccccCCcEEEeC----CCCeEEECCCChhhCceEEEEEeCCCC-cEE
Confidence 5788854 6 9999998432 23222111111 234666542 356799999999999999999954333 777
Q ss_pred EEEEEEcCCCceEeeC-CCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 76 IMLNVDDRGRGARLSA-GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 76 ~~l~V~~~~~~~~v~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
+.|.|.+++..+.+.. .....+.|.. .+.+.+.|++++..+.... ...|.+. ..+|+|.|+|.| |..+.
T Consensus 88 ~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~-----~~~l~~~--~~~~~g~Y~C~a~N~~~~ 160 (171)
T 1ccz_A 88 FFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----QKTMSYQ--WTNLRAPFKCKAVNRVSQ 160 (171)
T ss_dssp EEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-----SSEEEEE--CSCCSSCEEEEEEETTEE
T ss_pred EEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCc-----ceEEEEe--ccCCCceEEEEEEcccCc
Confidence 8899987754443321 1223577753 3567889998877654322 1124444 478999999999 88888
Q ss_pred ccEEEEEEE
Q psy3125 152 MNMAIMLNV 160 (163)
Q Consensus 152 ~~~~~~L~V 160 (163)
.+..+.|..
T Consensus 161 ~~~~~~l~c 169 (171)
T 1ccz_A 161 ESEMEVVNC 169 (171)
T ss_dssp EEEEECCCC
T ss_pred ccceeEEeC
Confidence 777776643
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=114.58 Aligned_cols=144 Identities=16% Similarity=0.297 Sum_probs=90.4
Q ss_pred CceEEecCC------CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+.+ ..+........ .++||.+.. ..+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 35 L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 112 (268)
T 1x9q_A 35 ISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFTLKINRVEAEDLGVYFCSQSTH 112 (268)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEEEEECCCChhHCEEEEEEEecC
Confidence 679998775 78999986432 12221111111 256888764 345789999999999999999999553
Q ss_pred CC--eeEEEEEEEEcCC-----------------------------CceEeeCCCeEEEecCCC--C--ceeEEEEeCC-
Q psy3125 70 PK--MNMAIMLNVDDRG-----------------------------RGARLSAGPLLNFAFPDL--L--TTNIYTYTGD- 113 (163)
Q Consensus 70 ~~--~~~~~~l~V~~~~-----------------------------~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~- 113 (163)
.. ....+.|.|...+ ....+..|..+.+.|... + ...+.|++..
T Consensus 113 ~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~ 192 (268)
T 1x9q_A 113 VPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSP 192 (268)
T ss_dssp SSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEET
T ss_pred CCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCC
Confidence 21 2233456555321 123456788899999642 2 2578887642
Q ss_pred -C-------------------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 -A-------------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 -~-------------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
. |+.+.........+|.|.+++.+|+|.|+|.|
T Consensus 193 ~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 251 (268)
T 1x9q_A 193 EKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251 (268)
T ss_dssp TTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence 2 11111111112467999999999999999999
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=117.19 Aligned_cols=150 Identities=16% Similarity=0.241 Sum_probs=97.9
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CC-eeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~-~~~~~ 76 (163)
|.|.+.+.+ +.|.|++.++..+ ....++.+.. +.+|.|.+++.+|+|.|+|.+.+. +. .+..+
T Consensus 109 l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~ 175 (292)
T 4dkd_C 109 LPCLLTDPVLEAGVSLVRVRGRPL--------MRHTNYSFSP-----WHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175 (292)
T ss_dssp CCEEESSGGGGSSEEEEEGGGCCC--------CSSCCEECCS-----SSCCEETTCCGGGCSEEEEEECSTTSCEECCCE
T ss_pred EeeeCCCCCcceeEEEEecCCCcc--------ccCCcccccC-----CceEEECCCCHHHCeEEEEEEEeCCCceeEEEE
Confidence 689999854 7899998432222 2234444332 233999999999999999999543 32 24467
Q ss_pred EEEEEc----CC------CceEeeCCCeEEEecCCC--C-ceeEEEEeCCCeEEE------ecCCCCceEEEEecccCcC
Q psy3125 77 MLNVDD----RG------RGARLSAGPLLNFAFPDL--L-TTNIYTYTGDARFSV------IHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 77 ~l~V~~----~~------~~~~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~ 137 (163)
.|.|.. ++ ....+..|..+.+.|... + .....|+.++..+.. ..........|.|.+++.+
T Consensus 176 ~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 255 (292)
T 4dkd_C 176 RLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ 255 (292)
T ss_dssp EEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTT
T ss_pred EEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChh
Confidence 788875 22 122335678888888632 2 233445555432211 1111112357999999999
Q ss_pred CCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 138 DAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
|+|.|+|.| |..|..+..+.|.|.++
T Consensus 256 d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 256 HAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp SCEEEEEEEECSSCEEEEEEEECC---
T ss_pred cCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 999999999 99999999999999764
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-19 Score=126.38 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=56.4
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+. | +.|.|+| ++..+ ....|+.+. +.+|.|.+++.+|+|.|+|.+.+.+.....+.|
T Consensus 28 l~C~~~~~~p~~~v~W~k--~g~~~-------~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l 92 (334)
T 1ry7_B 28 LSCPPPGGGPMGPTVWVK--DGTGL-------VPSERVLVG------PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeeCCCCCCCcceEEEE--CCeeC-------CCcccEEec------cceEEEeecccccCEEEEEEEEeCCeEEEEEEE
Confidence 68999987 5 8999998 22222 223455432 457999999999999999999544545556666
Q ss_pred EEEcCCC--------------------------------ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC---
Q psy3125 79 NVDDRGR--------------------------------GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--- 121 (163)
Q Consensus 79 ~V~~~~~--------------------------------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 121 (163)
.|...+. ...+..|..+.+.|.. .+...+.|++++..+.....
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 172 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence 6654311 1346678889999974 34567889888764432111
Q ss_pred --CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 122 --QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 122 --~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.......|.|.+++.+|+|.|+|.| |..+..+..+.|.|..
T Consensus 173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 216 (334)
T 1ry7_B 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216 (334)
T ss_dssp CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEEC
T ss_pred eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEec
Confidence 1123457999999999999999999 8888888888888864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=126.96 Aligned_cols=150 Identities=10% Similarity=0.097 Sum_probs=103.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|++.+...... . .+. ......+|.|.+++.+|+| .|+|.+. ..+..+..+.
T Consensus 178 L~C~~~g~p~p~i~W~~~~~~~~~~-~-------~~~-----~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~ 244 (347)
T 2ifg_A 178 LRCQVEGRGLEQAGWILTELEQSAT-V-------MKS-----GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ 244 (347)
T ss_dssp EEEEEECSSCCCCCEEESCCCSSEE-E-------CCC-----CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred EEEEEecCCCCEEEEEcCCceeecc-c-------ccc-----eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEE
Confidence 579999999 999999843221111 0 010 1235778999999999999 9999994 3444455556
Q ss_pred EEEEcCCC--ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEe--------c---CCCCceEEEEecccCcCCCeeE
Q psy3125 78 LNVDDRGR--GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVI--------H---PQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 78 l~V~~~~~--~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
|.|..++. ......|..+.+.|.. .+.+.+.|++++..+... . ........|.|.+++.+|+|.|
T Consensus 245 l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 324 (347)
T 2ifg_A 245 VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 324 (347)
T ss_dssp CCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEE
T ss_pred EEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceE
Confidence 66654433 1123346778888863 455688998776533211 0 0012356799999999999999
Q ss_pred EEEc-CCCCCccEEEEEEEecC
Q psy3125 143 ECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 143 ~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
+|.| |..|..+..+.|.|.++
T Consensus 325 ~C~a~N~~G~~~~~~~l~V~~~ 346 (347)
T 2ifg_A 325 TLLAANPFGQASASIMAAFMDN 346 (347)
T ss_dssp EEEEEETTEEEEEEEEECSCCC
T ss_pred EEEEecCCCceeeEEEEEecCC
Confidence 9999 99999999999998763
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=111.65 Aligned_cols=151 Identities=19% Similarity=0.287 Sum_probs=100.1
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l 78 (163)
|.|.+.+.|+.|.|+|.++..+ ....|+.+... ....+|.|.+++.+|+|.|+|.+.+ .+.. +..+.|
T Consensus 24 l~C~~~~~p~~v~W~~~~g~~~--------~~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l 93 (291)
T 2wim_A 24 FTCTAIGEPESIDWYNPQGEKI--------ISTQRVVVQKE--GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 93 (291)
T ss_dssp EEEEEESCCSEEECBCTTCCBC--------CCBTTEEEEEE--TTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEE
T ss_pred EEEEEeCCCCceEEECCCCcCc--------cCCCcEEEecC--CCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEE
Confidence 6899999888899997433322 23456666542 3467899999999999999999954 3332 456677
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.|..++ ....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.|
T Consensus 94 ~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 173 (291)
T 2wim_A 94 EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 173 (291)
T ss_dssp EEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEE
T ss_pred EecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEE
Confidence 776553 33457788899999974 345678898876543211100 011235999999999999999999
Q ss_pred CCCCCc--cEEEEEEEe
Q psy3125 147 NTEPKM--NMAIMLNVD 161 (163)
Q Consensus 147 ~~~~~~--~~~~~L~V~ 161 (163)
+..+.. ...+.|.|.
T Consensus 174 n~~~~~~~~~~~~~~v~ 190 (291)
T 2wim_A 174 VEARGEIDFRDIIVIVN 190 (291)
T ss_dssp ETTTTEEEEEEEEEEEE
T ss_pred ECCCCeeEEeeEEEEec
Confidence 655432 345555554
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=113.09 Aligned_cols=161 Identities=11% Similarity=0.166 Sum_probs=98.6
Q ss_pred CceEEecCC---CcEEEEEecCC-ee--E-E-e--cc-eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL-HI--L-T-T--NI-YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~-~~--~-~-~--~~-~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+ .+ + . . +. ..+. ..+|+.+..+...++++|.|.+++.+|+|.|.|++.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 99 (227)
T 1mju_H 20 LSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANK 99 (227)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEEC
Confidence 689999875 88999996532 11 1 1 1 11 1111 247998876444568899999999999999999995
Q ss_pred CCC--CeeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEecC-----CC--C
Q psy3125 68 TEP--KMNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVIHP-----QN--S 124 (163)
Q Consensus 68 ~~~--~~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~-----~~--~ 124 (163)
+.. .....+.|.|... .+.+ .+..|..+.+.|... +.. .+.|++++..+..... .+ .
T Consensus 100 ~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~ 179 (227)
T 1mju_H 100 LGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT 179 (227)
T ss_dssp ETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEE
T ss_pred CCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEE
Confidence 432 1223456777642 1111 223467788888642 333 7888877653211000 01 1
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
....|.|.++..+| |.|+|.| |..........+.+.+
T Consensus 180 ~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 180 LSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp EEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred EEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence 23469999999988 9999999 7655555666665554
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=116.02 Aligned_cols=134 Identities=15% Similarity=0.225 Sum_probs=92.2
Q ss_pred ceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 2 ACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 2 ~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
.|.+. +.| +.|.|+| ++ ..+..+.|+.+.. ..+..+|.|.+++.+|+|.|+|.+.+.......+.|.
T Consensus 22 ~~~~~~~~p~~~v~W~k--~~-------~~i~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~ 90 (312)
T 2y23_A 22 NFECDKMTPKSEFSWSK--DY-------VSTEDSPRLEVES--KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLID 90 (312)
T ss_dssp EEECSSCCTTCCEEEEE--TT-------EECTTCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEEC
T ss_pred EEEEeCCCCCcEEEEEE--CC-------EECCCCCCEEEEE--eCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEE
Confidence 45554 567 9999998 32 2233466887775 2356799999999999999999995432233344555
Q ss_pred EEc------------CC-------CceEeeCCCeEEEecCC---CCceeEEEEeCCCeE------EEecCCCCceEEEEe
Q psy3125 80 VDD------------RG-------RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARF------SVIHPQNSDEWNMKI 131 (163)
Q Consensus 80 V~~------------~~-------~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i 131 (163)
|.. ++ ....+..|..+.+.|.. .+.+.+.|++++..+ .+..........|.|
T Consensus 91 v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i 170 (312)
T 2y23_A 91 EEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 170 (312)
T ss_dssp HHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEE
T ss_pred EeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEE
Confidence 532 21 13456678888999963 366788999876543 222222234566999
Q ss_pred cccCcCCCeeEEEEc
Q psy3125 132 DYAQKRDAGIYECQV 146 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a 146 (163)
.+++.+|+|.|+|.|
T Consensus 171 ~~~~~~d~G~Y~C~~ 185 (312)
T 2y23_A 171 EKLQDEDEGTYTFQL 185 (312)
T ss_dssp SCCCGGGCEEEEEEE
T ss_pred ccCCcccCEeEEEEE
Confidence 999999999999999
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=112.30 Aligned_cols=136 Identities=20% Similarity=0.304 Sum_probs=99.9
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ + .+.|+| ++..+. ....+|.|.+++.+|+|.|+|.+.+. ..+..+.|
T Consensus 21 l~C~~~~~~~~~~~~W~~--~g~~~~-------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~s~~~~l 78 (262)
T 3rjd_A 21 LHCEVLHLPGSSSTQWFL--NGTATQ-------------------TSTPSYRITSASVNDSGEYRCQRGLS-GRSDPIQL 78 (262)
T ss_dssp EEEECSSCCCTTCEEEEE--TTEECS-------------------CCSSEEEESSCCGGGCEEEEEEESSS-CCCCCEEE
T ss_pred EEEECCCCCCCceEEEEE--CCEEee-------------------ccCCeEEEecCCcccCeEEEEEEecC-CccccEEE
Confidence 679999998 5 999998 322211 12346999999999999999999542 23445667
Q ss_pred EEEcCC-----CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDRG-----RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~~-----~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..++ ....+..|..+.+.|.. .+...+.|++++..+..... ...|.|.+++.+|+|.|+|.| +..
T Consensus 79 ~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~n~~ 154 (262)
T 3rjd_A 79 EIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW----NSNLTILKTNISHNGTYHCSGMGKH 154 (262)
T ss_dssp EEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE----CCCEEESSCCGGGCEEEEEEEESSS
T ss_pred EEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCC----CCeEEEEECChhhCEEEEEEEeCCC
Confidence 776542 23456678889999964 34568899988776654321 234999999999999999999 777
Q ss_pred CCccEEEEEEEec
Q psy3125 150 PKMNMAIMLNVDG 162 (163)
Q Consensus 150 ~~~~~~~~L~V~~ 162 (163)
+..+..+.|.|..
T Consensus 155 ~~~~~~~~l~V~~ 167 (262)
T 3rjd_A 155 RYTSAGISVTVKE 167 (262)
T ss_dssp EEEEECEEEEEEC
T ss_pred CccccceEEEecc
Confidence 7777888888764
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=109.60 Aligned_cols=156 Identities=9% Similarity=0.153 Sum_probs=98.0
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Eecc----eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TTNI----YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~~~----~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.+ +.|.|+|.+.+. .+ .... ..+ ...+||.+..+...++++|.|.+++.+|+|.|.|++.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 99 (223)
T 1dee_B 20 LSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKV 99 (223)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence 689999875 889999965321 11 1110 111 1247999876544568899999999999999999996
Q ss_pred CCC-------CeeEEEEEEEEcC---CCceE-------eeCCCeEEEecCCC---Cce-eEEEEe-CCCeEEE-e--c--
Q psy3125 68 TEP-------KMNMAIMLNVDDR---GRGAR-------LSAGPLLNFAFPDL---LTT-NIYTYT-GDARFSV-I--H-- 120 (163)
Q Consensus 68 ~~~-------~~~~~~~l~V~~~---~~~~~-------v~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~-~--~-- 120 (163)
+.. .....+.|.|... ++.+. +..|..+.+.|... +.+ .+.|++ ++..+.. . .
T Consensus 100 ~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~ 179 (223)
T 1dee_B 100 KFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSV 179 (223)
T ss_dssp SSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCE
T ss_pred ccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCcc
Confidence 542 1223457888742 11121 13567788888632 333 788998 5543210 0 0
Q ss_pred -CCC--CceEEEEecccCc--CCCeeEEEEc-CCCCCccEEE
Q psy3125 121 -PQN--SDEWNMKIDYAQK--RDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 121 -~~~--~~~~~L~i~~v~~--~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
... .....|.|..... +|.|.|+|.| +..+.....+
T Consensus 180 ~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 180 LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 011 1134588988876 8999999999 7766554433
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-18 Score=122.42 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=93.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+.+. | +.|.|+| ++..+ ..+.++.+. .+..+|.|.+++.+|+|.|+|.+.+ .+.....+.
T Consensus 26 l~C~~~~~~p~~~v~W~~--~~~~~-------~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~ 92 (317)
T 2y25_A 26 LKCKVANIKKETHIVWYK--DEREI-------SVDEKHDFK----DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92 (317)
T ss_dssp EEEEEESCCTTCEEEEEE--TTEEE-------CCSCC---------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCCEEEEEE--CCeEc-------CCCCcEEEE----CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEE
Confidence 67999998 6 9999998 33222 234455443 2467899999999999999999954 333344444
Q ss_pred EEEEcCC------CceEeeCCCeEEEecCC------------CCceeEEEEeCCCeE------EEecCCCCceEEEEecc
Q psy3125 78 LNVDDRG------RGARLSAGPLLNFAFPD------------LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDY 133 (163)
Q Consensus 78 l~V~~~~------~~~~v~~~~~~~~~~~~------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~ 133 (163)
|.|...+ ....+..|..+.+.|.. .+...+.|++++..+ .+.. ......|.|.+
T Consensus 93 l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~ 170 (317)
T 2y25_A 93 LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV--TGEQIWLQINE 170 (317)
T ss_dssp CSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEE--CSSEEEEEEES
T ss_pred EEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEec--cCCEEEEEECc
Confidence 4433211 11122344555555543 245688898876543 2221 23356699999
Q ss_pred cCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 134 AQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 134 v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
++.+|+|.|+|.| |..+..+..+.|.|
T Consensus 171 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 198 (317)
T 2y25_A 171 PTPNDKGKYVMELFDGKTGHQKTVDLSG 198 (317)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred CCcccCeeEEEEEEeCCceEEEEEEEee
Confidence 9999999999999 88787777777654
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=108.51 Aligned_cols=149 Identities=9% Similarity=0.178 Sum_probs=95.0
Q ss_pred CceEEecCC---CcEEEEEecCCee---E-Eec-----ce-E--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI---L-TTN-----IY-T--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~---~-~~~-----~~-~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.+ ..|.|+|...... + ... .. . ....+|+.+..+...+.++|.|.+++.+|+|.|.|.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 99 (221)
T 3m8o_H 20 LSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCV 99 (221)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHCEEEEEE
Confidence 689999754 8999998643321 1 111 00 1 112479988764445688999999999999999999
Q ss_pred eeCCC---CeeEEEEEEEEcC-CCceEe--------eCCCeEEEecCCC---Cc--eeEEEEeCCCeEEEec------CC
Q psy3125 66 VNTEP---KMNMAIMLNVDDR-GRGARL--------SAGPLLNFAFPDL---LT--TNIYTYTGDARFSVIH------PQ 122 (163)
Q Consensus 66 ~~~~~---~~~~~~~l~V~~~-~~~~~v--------~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~------~~ 122 (163)
+.+.. .....+.|.|... ...+.+ ..|..+.+.|... +. ..+.|++++..+.... ..
T Consensus 100 ~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~ 179 (221)
T 3m8o_H 100 IRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDAS 179 (221)
T ss_dssp EESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSS
T ss_pred EECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCC
Confidence 95532 2344556777632 111111 2567788888632 22 4788887766443211 01
Q ss_pred CC---ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 123 NS---DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 123 ~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.. ....|.|.++..+|+|.|+|.| +..
T Consensus 180 ~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~ 210 (221)
T 3m8o_H 180 GDLYTTSSQLTLPATQCLAGKSVTCHVKHYT 210 (221)
T ss_dssp SSCEEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEECHHHcCCCCeEEEEEEECC
Confidence 11 1245999999999999999999 544
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=126.64 Aligned_cols=145 Identities=9% Similarity=0.069 Sum_probs=88.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ...++. ....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 346 L~C~~~g~P~p~i~W~k--~g~~l~-------~~~~~~------~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L 410 (527)
T 3qs9_E 346 FSVRFKAYPQIRCTWTF--SRKSFP-------CEQKGL------DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410 (527)
T ss_dssp EEEEEEEESCCEEEEEE--TTEEEE-------CBCCBC------SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEE--CCEECc-------CCcccc------cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence 579999999 9999998 443332 122211 13567999999999999999999 555666777888
Q ss_pred EEEcCCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe---------------cCCCCceEEEEecccCcCCCee
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI---------------HPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|..+|.......+ ..+.|. ..+.+.+.|++.+...... .........+.|.-...+|+|.
T Consensus 411 ~V~~~P~i~~~~~~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~ 488 (527)
T 3qs9_E 411 NIRRKPQVLAEASA--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFL 488 (527)
T ss_dssp C--CCCEEEECCCC--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCE
T ss_pred EEecCCeEEEeCCC--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEE
Confidence 88877532222222 245664 4556788998665422100 0011112233444344569999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |..|..+..+.|+|.+
T Consensus 489 Y~C~A~N~~G~~~~~~~L~V~~ 510 (527)
T 3qs9_E 489 VKCCAYNSLGTSCETILLNSPG 510 (527)
T ss_dssp EEEEEECSSCEEEEEEEC----
T ss_pred EEEEEEeCCCCceeEEEEecCC
Confidence 99999 9999999999998875
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=111.55 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=96.4
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+ .+.| +.+.|+| ++..+... ..+..|.|.+++.+|+|.|+|.+.+ ....+..+.
T Consensus 102 l~C~~~~~~p~~~v~W~~--~g~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~ 162 (262)
T 3rjd_A 102 LRCHAWKDKLVYNVLYYR--NGKAFKFF-----------------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162 (262)
T ss_dssp EEEEEGGGCCCEEEEEEE--TTEEEEEE-----------------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEE
T ss_pred EEEEccCCCCCceEEEEE--CCcccccc-----------------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceE
Confidence 57999 6677 8999998 33322110 0134599999999999999999954 444556677
Q ss_pred EEEEcCC--------CceEeeCCCeEEEecCCCCc---e----eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 78 LNVDDRG--------RGARLSAGPLLNFAFPDLLT---T----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 78 l~V~~~~--------~~~~v~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
|.|.... ....+..|..+.+.|..... + ...|+.++..+.... ....|.|.+++.+|+|.|
T Consensus 163 l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y 238 (262)
T 3rjd_A 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN----TSSEYQILTARREDSGLY 238 (262)
T ss_dssp EEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEE----SCCEEEESSCCGGGCEEE
T ss_pred EEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccC----CCceEEEEEechhhCeEE
Confidence 8887631 12235668889999965321 1 356777776554322 234699999999999999
Q ss_pred EEEc-CCCCCc---cEEEEEEEec
Q psy3125 143 ECQV-NTEPKM---NMAIMLNVDG 162 (163)
Q Consensus 143 ~C~a-~~~~~~---~~~~~L~V~~ 162 (163)
+|.| |..|.. +..+.|.|+|
T Consensus 239 ~C~a~n~~G~~~~~s~~~~l~V~G 262 (262)
T 3rjd_A 239 WCEAATEDGNVLKRSPELELQVLG 262 (262)
T ss_dssp EEEEEETTSSCEEECCCEEECEEC
T ss_pred EEEEEcccCceEEecCCeEEEEeC
Confidence 9999 887765 5567787775
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-17 Score=109.10 Aligned_cols=161 Identities=13% Similarity=0.124 Sum_probs=92.8
Q ss_pred CceEEecCC-C---cEEEEEecCCeeEEec--ceE-----ecCCCeEEEec-----cCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-R---PVSWMRKRDLHILTTN--IYT-----YTGDARFSVIH-----PQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-~---~v~W~k~~~~~~~~~~--~~~-----~~~~~r~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.+.+ + .|.|+|.+...+.... ... .....|+.+.. ....++++|.|.+++.+|+|.|.|
T Consensus 21 L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 100 (225)
T 4fmk_A 21 LPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTC 100 (225)
T ss_dssp ECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEE
T ss_pred EEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHHHCcceEE
Confidence 689999877 4 4899985443332211 000 01123444322 112357789999999999999999
Q ss_pred EeeCCC--CeeEEEEEEEEcCCCce------EeeCCCeEEEecC---CCCceeEEEEeCCCeEEEe----cCCCC---ce
Q psy3125 65 QVNTEP--KMNMAIMLNVDDRGRGA------RLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVI----HPQNS---DE 126 (163)
Q Consensus 65 ~~~~~~--~~~~~~~l~V~~~~~~~------~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~---~~ 126 (163)
++.+.. .......+.+..++... ....+....+.|. ..+.....|+.++...... ..... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
T 4fmk_A 101 EFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTII 180 (225)
T ss_dssp EEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEE
T ss_pred EEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEE
Confidence 995432 22333344554443211 1222333444442 2345667777765543211 11111 13
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCcc--EEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMN--MAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~--~~~~L~V~ 161 (163)
+.|.|.+++.+|+|.|+|.| |..+... .++.|+|.
T Consensus 181 s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~ 218 (225)
T 4fmk_A 181 SRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR 218 (225)
T ss_dssp EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred EEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence 46999999999999999999 7766554 45566654
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-17 Score=109.30 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=95.5
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEe-cceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTT-NIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~-~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.+ +.|.|+|.+.. ..+.. .... ....+||.+.. ..++++|.|.+++.+|+|.|.|.+.+.. ..
T Consensus 21 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 98 (213)
T 3r06_A 21 INCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLESEDIGSYYCQQYYNYPWTF 98 (213)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEE
T ss_pred EEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCCcccCEEEEEecccCCceEE
Confidence 689999998 99999985321 11211 1111 11356888774 3468899999999999999999995432 23
Q ss_pred eEEEEEEEEcCC--CceEe-------eCCCeEEEecCCC----CceeEEEEeCCCeEEE-----ec-CC--CC---ceEE
Q psy3125 73 NMAIMLNVDDRG--RGARL-------SAGPLLNFAFPDL----LTTNIYTYTGDARFSV-----IH-PQ--NS---DEWN 128 (163)
Q Consensus 73 ~~~~~l~V~~~~--~~~~v-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~-~~--~~---~~~~ 128 (163)
...+.|.|.... +.+.+ ..+..+.+.|... +...+.|++++..+.. .. .. .. ....
T Consensus 99 ~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~ 178 (213)
T 3r06_A 99 GPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSST 178 (213)
T ss_dssp CCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEE
T ss_pred cCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEE
Confidence 445567773321 11211 2355688888632 2357889988764421 10 11 11 1246
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
|.|.....+|+|.|+|.| |......
T Consensus 179 l~i~~~~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 179 LSLTKADYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp EEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred EEeCHHHhccCCeEEEEEEecccCcc
Confidence 889999999999999999 6544333
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=108.13 Aligned_cols=152 Identities=9% Similarity=0.159 Sum_probs=97.8
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Eec---c-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TTN---I-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+. .+ ... . ... ...+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 99 (220)
T 2fbj_H 20 LSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARL 99 (220)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 689999864 789999864321 12 111 0 111 1247999886434568899999999999999999995
Q ss_pred CCCC----eeEEEEEEEEcCC---CceE------eeCCCeEEEecCCC---Cc--eeEEEEeCCCeEEEecC-----CCC
Q psy3125 68 TEPK----MNMAIMLNVDDRG---RGAR------LSAGPLLNFAFPDL---LT--TNIYTYTGDARFSVIHP-----QNS 124 (163)
Q Consensus 68 ~~~~----~~~~~~l~V~~~~---~~~~------v~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~-----~~~ 124 (163)
+... ....+.|.|...+ +.+. +..|..+.+.|... +. ..+.|++++..+..... ..+
T Consensus 100 ~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g 179 (220)
T 2fbj_H 100 HYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGG 179 (220)
T ss_dssp ETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSS
T ss_pred ccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCC
Confidence 5332 2334577877531 1222 23567788888642 33 57889887765422110 111
Q ss_pred ---ceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 125 ---DEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 125 ---~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
....|.|.++..+|+|.|+|.| +..+..
T Consensus 180 ~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 180 RYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp CEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred CEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 1235999999999999999999 665543
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=117.90 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=99.8
Q ss_pred CceEE------ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-C-CCC
Q psy3125 1 MACTV------MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-T-EPK 71 (163)
Q Consensus 1 l~C~~------~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~-~~~ 71 (163)
|.|.+ .+.| +.|.|+| ++..+.. ...++... +.+|.|.+++.+|+|.|+|.+. + .+.
T Consensus 123 l~C~~~~~~~~~g~p~~~i~W~k--~~~~l~~------~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~~n~~g~ 188 (315)
T 1itb_B 123 LVCPYMEFFKNENNELPKLQWYK--DCKPLLL------DNIHFSGV------KDRLIVMNVAEKHRGNYTCHASYTYLGK 188 (315)
T ss_dssp EECSSCTTTCTTTTCCCCCEEEE--TTEECCC------CSSSEEEE------TTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred EEEecccccccCCCCCCEEEEEE--CCEECCC------ccceEeec------CceEEEEeceehhCcEEEEEEEcCCCCc
Confidence 57888 7888 9999998 3332211 12344322 2369999999999999999995 4 333
Q ss_pred e---eEEEEEEEEcC-----C-----C--ceEeeCCCeEEEecCC--CCceeEEEEeCCCeEE------------EecCC
Q psy3125 72 M---NMAIMLNVDDR-----G-----R--GARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS------------VIHPQ 122 (163)
Q Consensus 72 ~---~~~~~l~V~~~-----~-----~--~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~ 122 (163)
. ...+.|.+... + . ...+..|..+.+.|.. .+.+.+.|++++..+. +....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~ 268 (315)
T 1itb_B 189 QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268 (315)
T ss_dssp EEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSS
T ss_pred EEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccC
Confidence 2 33444444421 1 1 1245678888999863 3456788988754221 11100
Q ss_pred C----CceEEEEecccCcCC-CeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 123 N----SDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 123 ~----~~~~~L~i~~v~~~D-~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
. .....|.|.+++.+| +|.|+|.| |..|..+..+.|.|..+
T Consensus 269 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~ 315 (315)
T 1itb_B 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVT 315 (315)
T ss_dssp CGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCCC
T ss_pred CCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecCC
Confidence 0 123479999999999 99999999 99999999999998764
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-17 Score=114.99 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=97.7
Q ss_pred ceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--CeeEEE
Q psy3125 2 ACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMNMAI 76 (163)
Q Consensus 2 ~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~~~~ 76 (163)
.|.+. +.| +.+.|+|. +..+..........++++.+. ..|.|..+..+|.|.|+|.+.+ .. .....+
T Consensus 138 ~C~~~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~-------s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 209 (313)
T 4fqp_A 138 RCVSTGGRPPAQITWHSD-LGGMPNTSQVPGFLSGTVTVT-------SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTV 209 (313)
T ss_dssp EEEEEEEBSCCEEEEEET-TCCEEEEEEEECSSTTCEEEE-------EEEEECCCGGGTTCEEEEEEECTTSSSCEEEEE
T ss_pred EEEccCccCCcEEEeecC-Cccccccceeeeecccccccc-------eeeeecccccccCeeEEEEEEccCcCccceeee
Confidence 57655 677 99999983 222222222222223333322 2489999999999999999954 22 233444
Q ss_pred EEEEEcC-------CCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 77 MLNVDDR-------GRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 77 ~l~V~~~-------~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|.|..+ .....+..|..+.+.|.. .+.+ .+.|++++..+.... ......|.|.+++.+|+|.|+|.|
T Consensus 210 ~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a 287 (313)
T 4fqp_A 210 NLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA--VAQGAQLLIRPVDKPINTTLICNV 287 (313)
T ss_dssp ECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EEETTEEEECCCSSCCEEEEEEEE
T ss_pred ecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce--EEeCCEEEECcCChhhCEEEEEEE
Confidence 4444332 222344567778898864 2334 578998876542100 011235999999999999999999
Q ss_pred -CCCCCccEEEEEEEec
Q psy3125 147 -NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 147 -~~~~~~~~~~~L~V~~ 162 (163)
|..|..+.++.|.|..
T Consensus 288 ~N~~G~~~~~~~l~V~~ 304 (313)
T 4fqp_A 288 TNALGARQAELTVQVKE 304 (313)
T ss_dssp ECSSCEEEEEEEEEEEC
T ss_pred EeCCCcEEEEEEEEEEe
Confidence 9999999999999975
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=110.64 Aligned_cols=152 Identities=12% Similarity=0.174 Sum_probs=95.0
Q ss_pred CceEEecCC---CcEEEEEecCCee----EEe---cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI----LTT---NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~----~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.+.+.. ... +...+ ...+|+.+..+...++++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 99 (210)
T 3d9a_H 20 LTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWD 99 (210)
T ss_dssp EEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETT
T ss_pred EEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEec
Confidence 689999875 8999998643211 111 00111 12468888754334578999999999999999999965
Q ss_pred CCCeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEecC-----CC--CceE
Q psy3125 69 EPKMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVIHP-----QN--SDEW 127 (163)
Q Consensus 69 ~~~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~-----~~--~~~~ 127 (163)
.......+.|.|.... +.+ .+..|..+.+.|... +.+ .+.|++++........ .. ....
T Consensus 100 ~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s 179 (210)
T 3d9a_H 100 GDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS 179 (210)
T ss_dssp SSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEE
T ss_pred CcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEE
Confidence 3333334567776321 111 123577888999642 334 7888877653111100 01 1234
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.|.|.++..+| |.|+|.| |..+...
T Consensus 180 ~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 180 SVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp EEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 69999999877 9999999 7666543
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=110.97 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=94.5
Q ss_pred CceEEecCC------CcEEEEEecCCe---eEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLH---ILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~---~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+.+. .+........ ..+||.+.. ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus 58 L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 135 (254)
T 2c1o_A 58 ISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSH 135 (254)
T ss_dssp EEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcC
Confidence 689999887 789999854321 1111111111 236888765 345789999999999999999999553
Q ss_pred CC--eeEEEEEEEEcC--CCceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe------cCCCC----
Q psy3125 70 PK--MNMAIMLNVDDR--GRGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI------HPQNS---- 124 (163)
Q Consensus 70 ~~--~~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~------~~~~~---- 124 (163)
.. ....+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+... .....
T Consensus 136 ~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~ 215 (254)
T 2c1o_A 136 FPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY 215 (254)
T ss_dssp SSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCE
T ss_pred cceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcE
Confidence 22 223345666542 2222221 255788999642 22 358899887643211 00111
Q ss_pred -ceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 125 -DEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 125 -~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
....|.|.++..+|+|.|+|.| |....
T Consensus 216 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 216 SMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp EEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred EEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 1457999999999999999999 66544
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-17 Score=111.38 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=91.6
Q ss_pred CceEEecCC-Cc-----EEEEEecCCe---e-E-E-ecceEecCCCeEEEec-cCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RP-----VSWMRKRDLH---I-L-T-TNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~-----v~W~k~~~~~---~-~-~-~~~~~~~~~~r~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.| +. |.|+|.+... + + . .+.......+|..+.. ....++++|.|.+++.+|+|.|+|++.
T Consensus 23 L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 102 (248)
T 3pv7_A 23 IFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVV 102 (248)
T ss_dssp ECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred EeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEEEE
Confidence 689998887 54 9999853221 1 1 1 0111111111111111 012357789999999999999999995
Q ss_pred C-CCCeeEEEEEEEEcCCCceE-----eeCCCeEEEecCC---CCce-eEEEEeCCCeE-------------EEecCCCC
Q psy3125 68 T-EPKMNMAIMLNVDDRGRGAR-----LSAGPLLNFAFPD---LLTT-NIYTYTGDARF-------------SVIHPQNS 124 (163)
Q Consensus 68 ~-~~~~~~~~~l~V~~~~~~~~-----v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-------------~~~~~~~~ 124 (163)
+ .......+.|.|..++.... +..+..+.+.|.. .+.+ .+.|++++..+ ........
T Consensus 103 ~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 182 (248)
T 3pv7_A 103 VTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDG 182 (248)
T ss_dssp ETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTS
T ss_pred eCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCC
Confidence 4 33456677888887643211 2234456688853 2344 78999877421 11111111
Q ss_pred ---ceEEEEecccCcCCCeeEEEEc-CCCCC--ccEEEEEEE
Q psy3125 125 ---DEWNMKIDYAQKRDAGIYECQV-NTEPK--MNMAIMLNV 160 (163)
Q Consensus 125 ---~~~~L~i~~v~~~D~G~Y~C~a-~~~~~--~~~~~~L~V 160 (163)
....|.|..+..+|+|.|+|.| |..+. .+..+.|.|
T Consensus 183 ~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 183 TFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 2356999999999999999999 77665 455666666
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-17 Score=107.95 Aligned_cols=145 Identities=10% Similarity=0.167 Sum_probs=93.2
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEe--cce----EecCC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTT--NIY----TYTGD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~--~~~----~~~~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+ .+ +.|.|+|. +..+... +.. ....+ +|+.+. .+++|.|.+++.+|+|.|+|++.+
T Consensus 18 L~C~~~~~~~~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~ 91 (193)
T 2if7_A 18 LPLEFPAGEKVNFITWLFN-ETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLSNLKMEDTGSYRAQIST 91 (193)
T ss_dssp ECCCCCCCSCCCEEEEEET-TEEEEEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEECSCCGGGCEEEEEEEEC
T ss_pred EeccCCCcccccEEEEEEC-CEEEEEEecccCCCCceeecCccccccEEEC-----CCeEEEECCCCcccCceEEEEEEe
Confidence 6798876 44 79999983 2222211 110 00112 366655 257799999999999999999955
Q ss_pred CC-CeeEEEEEEEEcCCCceEee-------CCC-eEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCc
Q psy3125 69 EP-KMNMAIMLNVDDRGRGARLS-------AGP-LLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 69 ~~-~~~~~~~l~V~~~~~~~~v~-------~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
.. .....+.|.|..++..+.+. .|. .+.+.|.. .+.+.+.|++++..+ .. ...|.|.....
T Consensus 92 ~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l--~~-----~~~l~i~~~~~ 164 (193)
T 2if7_A 92 KTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL--SS-----QPNLTVSWDPR 164 (193)
T ss_dssp SSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEE--ES-----SSEEEEEECTT
T ss_pred cCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEc--CC-----CCeEEEEeccC
Confidence 33 34457788887764333222 333 68888963 235688999876533 11 12377865555
Q ss_pred C-CCeeEEEEc-CCCCCccEEEEE
Q psy3125 137 R-DAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 137 ~-D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
+ |+|.|+|.| |..+..+..+.+
T Consensus 165 ~~d~G~Y~C~a~N~~g~~s~~~~~ 188 (193)
T 2if7_A 165 ISSEQDYTCIAENAVSNLSFSVSA 188 (193)
T ss_dssp TCSCCEEEEEEEETTEEEEEEEEH
T ss_pred cCCCCcEEEEEECCCCcccccccc
Confidence 4 999999999 888877665543
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=108.82 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=99.2
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Eec---ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TTN---IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~~---~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ ..|.|+|.+.+ ..+ ... ...+. ..+|+.+..+...++++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 99 (232)
T 1dn0_B 20 LTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPP 99 (232)
T ss_dssp EEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEec
Confidence 689999763 88999996432 222 111 11111 2479988765445688999999999999999999963
Q ss_pred --C--C---CeeEEEEEEEEcC-C--CceE-------eeCC-CeEEEecCCC---Cc-eeEEEEe-CCCeEEE-ec----
Q psy3125 69 --E--P---KMNMAIMLNVDDR-G--RGAR-------LSAG-PLLNFAFPDL---LT-TNIYTYT-GDARFSV-IH---- 120 (163)
Q Consensus 69 --~--~---~~~~~~~l~V~~~-~--~~~~-------v~~~-~~~~~~~~~~---~~-~~~~~~~-~~~~~~~-~~---- 120 (163)
. . .....+.|.|... + +.+. +..| ..+.+.|... +. ..+.|+. ++..+.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~ 179 (232)
T 1dn0_B 100 HDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSV 179 (232)
T ss_dssp STTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCE
T ss_pred CCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCcc
Confidence 2 1 1234567888752 1 1111 1245 6788888632 33 3788998 5543321 00
Q ss_pred -CCC--CceEEEEecccCc--CCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 121 -PQN--SDEWNMKIDYAQK--RDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 121 -~~~--~~~~~L~i~~v~~--~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
... .....|.|.++.. +|.|.|+|.| +..+.......+.|.
T Consensus 180 ~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 180 LRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred ccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 011 1134689999887 8999999999 777776666555543
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=119.78 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=97.4
Q ss_pred CceEEec-----CC-CcEEEEEecCCeeEEecceEe-cCCCeEEEecc--------CCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMG-----LG-RPVSWMRKRDLHILTTNIYTY-TGDARFSVIHP--------QNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~-----~~-~~v~W~k~~~~~~~~~~~~~~-~~~~r~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+ .| +.|.|+|.+ ..+......+ ..+.++.+... ...+..+|.|.+++.+|+|.|+|.
T Consensus 196 l~C~~~~~~~~~~P~p~i~W~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 273 (363)
T 1wio_A 196 FSFPLAFTVEKLTGSGELWWQAER--ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273 (363)
T ss_dssp EECCCCCCCCSSCEEEEEEEEESS--CCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEE
T ss_pred EEEEEecccccCCCceeEEEecCC--CCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEE
Confidence 5798877 77 999999832 2111100000 11445544321 012355899999999999999999
Q ss_pred e-eC--CCCeeEEEEEEEEcCCCceEeeCCCeEEEecCC--CCcee--EEEEeCCCeEEEecCCCCceEEEEecccCcCC
Q psy3125 66 V-NT--EPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPD--LLTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 66 ~-~~--~~~~~~~~~l~V~~~~~~~~v~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
+ +. .+..+..+.|.|... .|..+.+.|.. .+.+. +.|++++..+.. ...|.|.+++.+|
T Consensus 274 a~n~~~~g~~~~~~~l~V~~v-------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-------~~~l~i~~v~~~d 339 (363)
T 1wio_A 274 LALEAKTGKLHQEVNLVVMRA-------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-------SKREKAVWVLNPE 339 (363)
T ss_dssp ECBTTTTCCEEEEEEEEEEEE-------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-------EESSSEEEESSCC
T ss_pred EEEhhhcCeEEEEEeEEEEEe-------cCCCeeEEEEEccccCCCccEEEEeCCCceee-------eeeeeeeeecccc
Confidence 9 44 466777888888732 15667777752 23344 899988865432 2338899999999
Q ss_pred CeeEEEEcCCCCCccEEEEEEEe
Q psy3125 139 AGIYECQVNTEPKMNMAIMLNVD 161 (163)
Q Consensus 139 ~G~Y~C~a~~~~~~~~~~~L~V~ 161 (163)
+|.|+|.|...+....+..|.|.
T Consensus 340 ~G~Y~C~a~~~~~~~~~~~~~V~ 362 (363)
T 1wio_A 340 AGMWQCLLSDSGQVLLESNIKVL 362 (363)
T ss_dssp SEEEEEEECSSSSCCEEEEEEEC
T ss_pred ceeEEEEEecCCeEEEecceEec
Confidence 99999999666777788877763
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=110.80 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=95.9
Q ss_pred CceEEecC-C-CcEEEEEecC---CeeE-Eecc---eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRD---LHIL-TTNI---YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~---~~~~-~~~~---~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. + +.|.|+|.+. ...+ .... .... ..+|+.+.. ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus 20 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 97 (218)
T 3s96_B 20 LTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISNIQPEDEAIYICGVGDT 97 (218)
T ss_dssp EEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEEE
T ss_pred EEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEEccCCcccCEEEEEEEecC
Confidence 68999999 8 9999998532 1111 1111 0111 235888765 346889999999999999999999442
Q ss_pred C------CeeEEEEEEEEcCC---CceEe-------eCCCeEEEecCCC---Cce-eEEEEeCCCeEEEec------CCC
Q psy3125 70 P------KMNMAIMLNVDDRG---RGARL-------SAGPLLNFAFPDL---LTT-NIYTYTGDARFSVIH------PQN 123 (163)
Q Consensus 70 ~------~~~~~~~l~V~~~~---~~~~v-------~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~------~~~ 123 (163)
. .....+.|.|...+ +.+.+ ..+..+.+.|... +.. .+.|++++..+.... ...
T Consensus 98 ~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~ 177 (218)
T 3s96_B 98 IKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEG 177 (218)
T ss_dssp ETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-------------
T ss_pred CCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccC
Confidence 2 23445678887532 22222 1345688888632 233 688998776443210 001
Q ss_pred C---ceEEEEecccCcCCCeeEEEEc-CCCCCccEE
Q psy3125 124 S---DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155 (163)
Q Consensus 124 ~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~ 155 (163)
. ....|.|..+..+|+|.|+|.| |..+.....
T Consensus 178 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 213 (218)
T 3s96_B 178 NKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS 213 (218)
T ss_dssp -CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence 1 1234889999999999999999 766554443
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=111.04 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=97.2
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---C
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---K 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~ 71 (163)
|.|.+. + +.|.|+|.+.. ..+..... .....+|+.+.. ..++++|.|.+++.+|+|.|.|++.+.. .
T Consensus 20 L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 95 (211)
T 3tv3_L 20 ISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYYCGSLVGNWDVI 95 (211)
T ss_dssp EEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEEEETTTEEE
T ss_pred EEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEEEEEecCCCcee
Confidence 679998 6 99999985321 11111111 011346887765 3468899999999999999999995432 3
Q ss_pred eeEEEEEEEEcC---CCceEee-------CCCeEEEecCCC----CceeEEEEeCCCeEEE---e----cCCCC---ceE
Q psy3125 72 MNMAIMLNVDDR---GRGARLS-------AGPLLNFAFPDL----LTTNIYTYTGDARFSV---I----HPQNS---DEW 127 (163)
Q Consensus 72 ~~~~~~l~V~~~---~~~~~v~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~----~~~~~---~~~ 127 (163)
....+.|.|... ++.+.+. .|..+.+.|... +...+.|++++..+.. . ..... ...
T Consensus 96 ~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s 175 (211)
T 3tv3_L 96 FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASS 175 (211)
T ss_dssp ECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEE
T ss_pred ECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEE
Confidence 445567777732 1122222 377788999632 2467889987764421 0 00111 125
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
.|.|.++..+|+|.|+|.| +..+.....+
T Consensus 176 ~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 176 YLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp EEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred EEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 6999999999999999999 7665554444
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=121.36 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=77.0
Q ss_pred CceEE-----ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-C-CCe
Q psy3125 1 MACTV-----MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-E-PKM 72 (163)
Q Consensus 1 l~C~~-----~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~-~~~ 72 (163)
|.|.+ .+.| +.|.|+| ++..+ ....++... ..+|.|.+++.+|+|.|+|.+.+ . +..
T Consensus 140 l~C~~~~~~~~g~p~~~v~W~k--~~~~l-------~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~ 204 (349)
T 4dep_C 140 ITCPNVDGYFPSSVKPTITWYM--GCYKI-------QNFNNVIPE------GMNLSFLIALISNNGNYTCVVTYPENGRT 204 (349)
T ss_dssp EECCSCTTSSCTTSCCEEEEEE--TTEEC-------CSCSSEEEE------TTEEEEESCCGGGCEEEEEEEEEEETTEE
T ss_pred EEcCCCcccccCCCCceEEEee--CCEEC-------CCccceeec------CCEEEEeeeeecCCcEEEEEEEEeeCCEE
Confidence 46764 6778 9999998 33322 112233322 24699999999999999999944 2 332
Q ss_pred ---eEEEEEEEEcCC-----Cce---------EeeCCCeEEEecCCC------CceeEEEEeCCCeEEEe-cCC------
Q psy3125 73 ---NMAIMLNVDDRG-----RGA---------RLSAGPLLNFAFPDL------LTTNIYTYTGDARFSVI-HPQ------ 122 (163)
Q Consensus 73 ---~~~~~l~V~~~~-----~~~---------~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~------ 122 (163)
+..+.|.|..++ +.. .+..|..+.+.|... +.+.+.|++++..+... ...
T Consensus 205 ~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~ 284 (349)
T 4dep_C 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284 (349)
T ss_dssp EEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEE
T ss_pred EEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccce
Confidence 566667776531 111 445566777888533 56788999887655431 000
Q ss_pred -----CC--ceEEEEecccCcCCC-eeEEEEc-CCCCCccEEEEEEEec
Q psy3125 123 -----NS--DEWNMKIDYAQKRDA-GIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 123 -----~~--~~~~L~i~~v~~~D~-G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.. ....|.|.+++.+|+ |.|+|.| |..|..+..+.|.|..
T Consensus 285 ~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp ECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred eeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 11 134499999999999 9999999 9999999988888753
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=116.11 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=98.0
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--CeeEE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMNMA 75 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~~~ 75 (163)
|.|.+ .+.| +.|.|+|. +..+.. .... ..+..+.. ...|.|.++..+|.|.|+|.+.+ .. .....
T Consensus 134 l~C~~~~g~P~~~i~W~~~-~~~~~~-~~~~-~~~~~~~~-------~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 203 (308)
T 4fom_A 134 AICIAATGKPVAHIDWEGD-LGEMES-TTTS-FPNETATI-------ISQYKLFPTRFARGRRITCVVKHPALEKDIRYS 203 (308)
T ss_dssp EEEEEEEEBSCCEEEECCC-SSBCCE-EEEE-CTTSCEEE-------EEEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred EEEEecCCcCCceEEEEEC-Cccccc-ccce-eeeecccc-------cccceEEeeeecCCccEEEEEEccCCCCceEEe
Confidence 46765 5788 99999973 222211 1111 11212111 23599999999999999999954 22 23344
Q ss_pred EEEEEEcC-------CCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEE
Q psy3125 76 IMLNVDDR-------GRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 76 ~~l~V~~~-------~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
+.|.|..+ .....+..|..+.+.|.. .+.+ .+.|++++..+.. .........|.|.+++.+|+|.|+|.
T Consensus 204 ~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~ 282 (308)
T 4fom_A 204 FILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPD-GLLASDNTLHFVHPLTFNYSGVYICK 282 (308)
T ss_dssp EECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCS-SCBCSTTEEECCSCCCSCCCSEEEEE
T ss_pred EEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCC-cEEEcCCeEEEECCCChhhCEEEEEE
Confidence 45555433 223345567788899974 2334 5778887765431 11223345678999999999999999
Q ss_pred c-CCCCCccEEEEEEEec
Q psy3125 146 V-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~~ 162 (163)
| |..|..+.++.|.|..
T Consensus 283 A~N~~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 283 VTNSLGQRSDQKVIYISD 300 (308)
T ss_dssp EEETTEEEEEEEECCEEC
T ss_pred EEeCCCcEEEEEEEEEEc
Confidence 9 9999999999999875
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=109.82 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=97.6
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEec----c--eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTTN----I--YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~~----~--~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.+ +.|.|+|.+.+. ++... . .... ..+|+.+..+...++++|.|.+++.+|+|.|.|.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 99 (220)
T 1pz5_B 20 LSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCT 99 (220)
T ss_dssp EEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEE
Confidence 689999865 889999864321 11111 1 1111 1478888754334578999999999999999999
Q ss_pred eeCCC----CeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCe---EEEec--CC
Q psy3125 66 VNTEP----KMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDAR---FSVIH--PQ 122 (163)
Q Consensus 66 ~~~~~----~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~---~~~~~--~~ 122 (163)
+.+.. .....+.|.|.... +.+ .+..|..+.+.|... +.+ .+.|+.++.. ..... ..
T Consensus 100 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~ 179 (220)
T 1pz5_B 100 RGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQS 179 (220)
T ss_dssp EECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEET
T ss_pred EecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccC
Confidence 96543 12234667776321 111 123567888999642 444 7888877652 11100 01
Q ss_pred C--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 123 N--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 123 ~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
. .....|.|.++..+| |.|+|.| |..+.....+.
T Consensus 180 ~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 180 GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 1 124569999998877 9999999 77776554443
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=113.50 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=105.3
Q ss_pred CceEEecC----C-CcEEEEEecCCee---EEec--c-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-
Q psy3125 1 MACTVMGL----G-RPVSWMRKRDLHI---LTTN--I-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV- 66 (163)
Q Consensus 1 l~C~~~~~----~-~~v~W~k~~~~~~---~~~~--~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~- 66 (163)
|.|.+.+. + +.|.|+|.++... .... . ... ...+|+.+.. ....+.+|.|.+++.+|+|.|+|.+
T Consensus 34 L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~ 112 (331)
T 3u83_A 34 LHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR-PSFTDGTIRLSRLELEDEGVYICEFA 112 (331)
T ss_dssp ECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS-CSSSBCCEEECSCCGGGCEEEEEEEE
T ss_pred EeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc-cCCCCceEEEcccCcccCcEEEEEEE
Confidence 67998887 4 6899999532211 1100 0 011 1346777762 2345778999999999999999996
Q ss_pred e-CCCCeeEEEEEEEEcCCC--------ceEeeCC---CeEEEecC---CCCceeEEEEeCCCeEEE---ecCCCC---c
Q psy3125 67 N-TEPKMNMAIMLNVDDRGR--------GARLSAG---PLLNFAFP---DLLTTNIYTYTGDARFSV---IHPQNS---D 125 (163)
Q Consensus 67 ~-~~~~~~~~~~l~V~~~~~--------~~~v~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~---~ 125 (163)
. ..+.....+.|.|..++. ...+..| ..+.+.|. ..+.+.+.|+++...... ...... .
T Consensus 113 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
T 3u83_A 113 TFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192 (331)
T ss_dssp EETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE
T ss_pred ecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE
Confidence 3 244566777888887542 2345556 66888885 234568889875332211 111111 1
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
...|.|.+++.+|+|.|+|.| |..+..+..+.|.|.
T Consensus 193 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 229 (331)
T 3u83_A 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229 (331)
T ss_dssp EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE
T ss_pred EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe
Confidence 356999999999999999999 887888888888775
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=117.56 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=102.9
Q ss_pred CceEEe-------cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCC
Q psy3125 1 MACTVM-------GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPK 71 (163)
Q Consensus 1 l~C~~~-------~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~ 71 (163)
|.|.+. +.| +.|.|+|.+....+. + ....|+... +.+|.|.+++.+|+|.|+|.+. ..+.
T Consensus 38 L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~-~----~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~~~n~~g~ 106 (339)
T 3o4o_C 38 LRCPQVPYWLWASVSPRINLTWHKNDSARTVP-G----EEETRMWAQ------DGALWLLPALQEDSGTYVCTTRNASYC 106 (339)
T ss_dssp EECTTSCSSCCSTTSSCCBCCCEESSCCSCCS-C----CSSSCEEEE------TTEEEESSBCTTCCEEEECCEEETTEE
T ss_pred EEeccccccccccCCCCceEEEEECCCCcccC-c----cccccEEee------CCeEEECCCCcccCEEEEEEEECCcce
Confidence 578887 777 999999832221111 0 013455433 3369999999999999999994 4445
Q ss_pred eeEEEEEEEEcCCC--------ceEeeCCCeEEEecC-----C--CCceeEEEEeCCCeEEEecC---CCCceEEEEecc
Q psy3125 72 MNMAIMLNVDDRGR--------GARLSAGPLLNFAFP-----D--LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDY 133 (163)
Q Consensus 72 ~~~~~~l~V~~~~~--------~~~v~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~ 133 (163)
....+.|.|...+. ...+..|..+.+.|. . .+...+.|++++..+..... .......|.|.+
T Consensus 107 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~ 186 (339)
T 3o4o_C 107 DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHD 186 (339)
T ss_dssp EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESS
T ss_pred EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcc
Confidence 66777888887642 235678899999997 3 23567889887653321100 001124699999
Q ss_pred cCcCCCeeEEEEc-CCCC----CccEEEEEEEec
Q psy3125 134 AQKRDAGIYECQV-NTEP----KMNMAIMLNVDG 162 (163)
Q Consensus 134 v~~~D~G~Y~C~a-~~~~----~~~~~~~L~V~~ 162 (163)
++.+|+|.|+|.| |..+ ..+..+.|.|..
T Consensus 187 v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~ 220 (339)
T 3o4o_C 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK 220 (339)
T ss_dssp CCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred cCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence 9999999999999 7665 456788888863
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-16 Score=103.40 Aligned_cols=154 Identities=11% Similarity=0.102 Sum_probs=93.6
Q ss_pred CceEEec----CC-CcEEEEEecCCeeEEecceEe-c---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C
Q psy3125 1 MACTVMG----LG-RPVSWMRKRDLHILTTNIYTY-T---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P 70 (163)
Q Consensus 1 l~C~~~~----~~-~~v~W~k~~~~~~~~~~~~~~-~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~ 70 (163)
|.|.+.+ .+ +.+.|.|. +..+........ . ..+|..+.. .++.+|.|.+++.+|+|.|+|++.+. +
T Consensus 14 L~C~~~~~~~~~~~~~~~W~~~-~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~g 89 (201)
T 1dr9_A 14 LSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRPSDEGTYECVVLKYEK 89 (201)
T ss_dssp ECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred EecccCCCcccccccEEEEEeC-CcEEEEEeCCceeecCcccceeEEcc---CCCcEEEEecccchhCeEEEEEEEcCCC
Confidence 5788863 35 88999983 222221111110 0 123444422 24678999999999999999999542 2
Q ss_pred C-e----eEEEEEEEEcCCCceE--e---eCCCeEEEecCC---CCceeEEEEeCCCeEEE-----ecCCCCce-EEEEe
Q psy3125 71 K-M----NMAIMLNVDDRGRGAR--L---SAGPLLNFAFPD---LLTTNIYTYTGDARFSV-----IHPQNSDE-WNMKI 131 (163)
Q Consensus 71 ~-~----~~~~~l~V~~~~~~~~--v---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~L~i 131 (163)
. . ...+.|.|..++..+. + ..|..+.+.|.. .+.+.+.|++++..+.. ........ ....+
T Consensus 90 ~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 169 (201)
T 1dr9_A 90 DAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSK 169 (201)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEE
T ss_pred CccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEE
Confidence 2 2 3567788877632222 1 346678888964 35678999988664321 11111122 22234
Q ss_pred cccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 132 DYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..++.+|+|.|+|.| |..+..+..+.+
T Consensus 170 ~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 170 LDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEEEecCCCEEEEEEecCcceeeeEEec
Confidence 456678999999999 888877776654
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=111.98 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=95.5
Q ss_pred CceEEecCC--CcEEEEEecCC-e--eEEecceEec--CCCeEE----------EeccCCCCeEEEEEcccCcCCCeeEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL-H--ILTTNIYTYT--GDARFS----------VIHPQNSDEWNMKIDYAQKRDAGIYE 63 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~-~--~~~~~~~~~~--~~~r~~----------~~~~~~~~~~~L~i~~v~~~D~G~Y~ 63 (163)
|.|.+.+.+ +.|.|+|.+.. . .+..+ .... ...|+. +.. +.+|.|.+++.+|+|.|+
T Consensus 20 L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~ 93 (231)
T 2pet_A 20 LDCTPTGTHDHYMLEWFLTDRSGARPRLASA-EMQGSELQVTMHDTRGRSPPYQLDS-----QGRLVLAEAQVGDERDYV 93 (231)
T ss_dssp ECCCCBSCCSEEEEEEEEECTTCCCCEEEEE-EEETTEEEEEECCCSCCSSCCEECT-----TCCEEESSCCGGGCEEEE
T ss_pred EecccCCCCCceEEEEEEeCCCceeEEEEec-cccCCccccccccccccccccccCC-----CceEEEcccCcccCceEE
Confidence 679999888 79999985432 1 12111 0000 012222 332 233999999999999999
Q ss_pred EEeeCC--CCeeEEEEEEEEcCCCceE---------eeCCCeE-EEecCC---CCceeEEEEeCCCeEEEec--------
Q psy3125 64 CQVNTE--PKMNMAIMLNVDDRGRGAR---------LSAGPLL-NFAFPD---LLTTNIYTYTGDARFSVIH-------- 120 (163)
Q Consensus 64 C~~~~~--~~~~~~~~l~V~~~~~~~~---------v~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~-------- 120 (163)
|.+.+. +.....+.|.|..++..+. +..|..+ .+.|.. .+.+.+.|++++..+....
T Consensus 94 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~ 173 (231)
T 2pet_A 94 CVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYM 173 (231)
T ss_dssp EEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEE
T ss_pred EEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceee
Confidence 999543 4566778888887653332 2245555 888864 4566788988764322111
Q ss_pred ------CCCC---ceEEEEecccCcCCCeeEEEEc-C-----CCCC-ccEEEEEEEe
Q psy3125 121 ------PQNS---DEWNMKIDYAQKRDAGIYECQV-N-----TEPK-MNMAIMLNVD 161 (163)
Q Consensus 121 ------~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~-----~~~~-~~~~~~L~V~ 161 (163)
...+ ....|.|.....+|+|.|+|.| | ..+. .+..+.|.|.
T Consensus 174 ~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 174 TSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp EEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred cceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence 0000 0256888866677799999999 7 3344 5556666553
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=118.84 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=98.6
Q ss_pred CceEEecCC-CcEEEEEecCCe-e--E-Eecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC----
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH-I--L-TTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---- 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~-~--~-~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---- 70 (163)
|.|.+.+.+ +.|.|+|.+.+. + + .... ......+||.+.. .....+|.|.+++.+|+|.|+|.+.+..
T Consensus 20 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 97 (523)
T 2rcj_C 20 ISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK--SGTSASLAISGLEAEDESDYYCASWNSSDNSY 97 (523)
T ss_pred EEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec--CCCEEEEEECCCChhhCEEEEEEEccCCCccc
Confidence 689999988 999999854221 1 1 1110 0111246887543 3457899999999999999999995432
Q ss_pred CeeEEEEEEEEcC----C------CceEeeCCCeEEEecCCC--Cc--eeEEEEeCCCeEEEec------CCCCc----e
Q psy3125 71 KMNMAIMLNVDDR----G------RGARLSAGPLLNFAFPDL--LT--TNIYTYTGDARFSVIH------PQNSD----E 126 (163)
Q Consensus 71 ~~~~~~~l~V~~~----~------~~~~v~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~------~~~~~----~ 126 (163)
.....+.|.|... + ....+..|..+.+.|... +. ..+.|++++..+.... ..... .
T Consensus 98 ~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~ 177 (523)
T 2rcj_C 98 VFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAAS 177 (523)
T ss_pred cccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEE
Confidence 2234556777421 1 111233466788899643 22 3788998876432110 00111 2
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..|.|.+++.+|+|.|+|.| |..+.....+.+
T Consensus 178 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 210 (523)
T 2rcj_C 178 SYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP 210 (523)
T ss_pred EEEEEechhcCCCceEEEEEEecCcccccceee
Confidence 46999999999999999999 776665555443
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=114.07 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=88.7
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CC-----eeE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PK-----MNM 74 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~-----~~~ 74 (163)
|.|.+.+.++.+.|+|.+....... ....... ......|.|.+++.+|+|.|+|.+.+. +. .+.
T Consensus 138 L~C~~~~~~~~~~w~k~g~~~~~~~--------~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~ 207 (316)
T 3vh8_G 138 LQCWSDIMFEHFFLHKEGISKDPSR--------LVGQIHD--GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD 207 (316)
T ss_dssp EEEEESSCCSEEEEEETTCCSCCEE--------EECEEET--TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCC
T ss_pred EEEcCCCCCcEEEEEECCCccccce--------eeeeecC--CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCC
Confidence 5799965558899998332211100 0001111 123567999999999999999999542 21 255
Q ss_pred EEEEEEEcCCC--------ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCe
Q psy3125 75 AIMLNVDDRGR--------GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 75 ~~~l~V~~~~~--------~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G 140 (163)
.+.|.|..... ...+..|..+.+.|... +.....|++++...... .........|.|.+++ |+|
T Consensus 208 ~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G 285 (316)
T 3vh8_G 208 PLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGG 285 (316)
T ss_dssp CEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESSCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------C
T ss_pred CEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCCCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCE
Confidence 56677764321 11345688899999643 34578888887644321 1122234679999999 999
Q ss_pred eEEEEc-CCCC-----CccEEEEEEEecC
Q psy3125 141 IYECQV-NTEP-----KMNMAIMLNVDGK 163 (163)
Q Consensus 141 ~Y~C~a-~~~~-----~~~~~~~L~V~~~ 163 (163)
.|+|.| +..+ ..+..+.|.|.|+
T Consensus 286 ~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 286 TYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp EEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred EEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 999999 6543 4678889998874
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=105.39 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=97.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--C----CCeeE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--E----PKMNM 74 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~----~~~~~ 74 (163)
|.|.+.+..+.+.|+|.+.. +.. ... ..++ . ....+.+|.|.+++.+|+|.|+|.+.+ . ...+.
T Consensus 26 L~C~~~~~~~~~~W~k~g~~-~~~-~~~----~~~~---~-~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~ 95 (257)
T 1b6u_A 26 LQCWSDVRFQHFLLHREGKF-KDT-LHL----IGEH---H-DGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSD 95 (257)
T ss_dssp EEEEESSCCSEEEEEEESTT-CEE-EEE----ECBC---C-TTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCC
T ss_pred EEEecCCCCcEEEEEECCCC-CCc-cee----eeec---c-CCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCC
Confidence 57998754488999984322 111 000 0000 0 112467899999999999999999942 1 12355
Q ss_pred EEEEEEEcCCC--------ceEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEEecC-----CCCceEEEEecccCcCCCe
Q psy3125 75 AIMLNVDDRGR--------GARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 75 ~~~l~V~~~~~--------~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G 140 (163)
.+.|.|..... ...+..|..+.+.|.... .....|++++..+..... .......|.|.+++ |+|
T Consensus 96 ~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G 173 (257)
T 1b6u_A 96 PLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGG 173 (257)
T ss_dssp CEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCE
T ss_pred CEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCE
Confidence 67788875421 123567889999997532 346788888775543211 11236779999998 999
Q ss_pred eEEEEc-CCC-----CCccEEEEEEEecC
Q psy3125 141 IYECQV-NTE-----PKMNMAIMLNVDGK 163 (163)
Q Consensus 141 ~Y~C~a-~~~-----~~~~~~~~L~V~~~ 163 (163)
.|+|.| +.. ...+..+.|.|.|+
T Consensus 174 ~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~ 202 (257)
T 1b6u_A 174 TYRCFGSFRDSPYEWSNSSDPLLVSVTGN 202 (257)
T ss_dssp EEEEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred EEEEEEEcCCCCcccccCCCCEEEEEecc
Confidence 999999 542 24567788888763
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=119.88 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=104.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeCC-CC-eeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNTE-PK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~-~~-~~~~~ 76 (163)
|.|.+.+.+ +.|.|+|.++..+ ..+.++.+.. +.+|.|.+++.+|+| .|+|.+.+. +. .+..+
T Consensus 134 l~C~~~~~~~~~v~W~~~~g~~l--------~~~~~~~~~~-----~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~ 200 (524)
T 2ec8_A 134 VRCPLTDPEVTNYSLKGCQGKPL--------PKDLRFIPDP-----KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKF 200 (524)
T ss_dssp ECCCBSCCCCSCEEEECSSSCCC--------CSSCEEEEET-----TTEEEEESCCGGGTTCEEEEEEC----CCCCCCE
T ss_pred EECcCCCCccceEEEEccCCcCc--------CCCCceeECC-----CccEEEeccchhhCCceEEEEEEECCceEEEEEE
Confidence 579999988 9999997444332 2345666553 236999999999999 999999542 22 24466
Q ss_pred EEEEEc----C------CCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeE--EEe------cC-CCCceEEEEeccc
Q psy3125 77 MLNVDD----R------GRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARF--SVI------HP-QNSDEWNMKIDYA 134 (163)
Q Consensus 77 ~l~V~~----~------~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~--~~~------~~-~~~~~~~L~i~~v 134 (163)
.|.|.. + +....+..|..+.+.|.. .+.+ .+.|++++... ... .. .......|.|.++
T Consensus 201 ~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 280 (524)
T 2ec8_A 201 ILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280 (524)
T ss_dssp ECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSC
T ss_pred EEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCC
Confidence 777762 1 223356778889999963 2333 48999887761 111 10 1233567999999
Q ss_pred CcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 135 QKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 281 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 309 (524)
T 2ec8_A 281 RVNDSGVFMCYANNTFGSANVTTTLEVVD 309 (524)
T ss_dssp CTTTCEEEEEEEECSSCEEEEEEEEEEES
T ss_pred CHHHCEEEEEEEEecCCceEEEEEEEEec
Confidence 999999999999 8888888899998864
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=107.93 Aligned_cols=149 Identities=13% Similarity=0.201 Sum_probs=94.5
Q ss_pred CceEEecCC---CcEEEEEecCCe-e--E-Eec----ceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH-I--L-TTN----IYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~-~--~-~~~----~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+. + + ... ...+ ...+|+.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 99 (225)
T 1op3_H 20 LSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK 99 (225)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 689999865 889999865321 1 1 111 1111 1247998886544568899999999999999999996
Q ss_pred CCC------C---eeEEEEEEEEcCC---CceE-------eeCCCeEEEecCCC---Cce-eEEEEeCCCeE---EEec-
Q psy3125 68 TEP------K---MNMAIMLNVDDRG---RGAR-------LSAGPLLNFAFPDL---LTT-NIYTYTGDARF---SVIH- 120 (163)
Q Consensus 68 ~~~------~---~~~~~~l~V~~~~---~~~~-------v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~---~~~~- 120 (163)
+.. . ....+.|.|...+ +.+. +..|..+.+.|... +.+ .+.|++++... ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~ 179 (225)
T 1op3_H 100 GSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV 179 (225)
T ss_dssp CCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCE
T ss_pred cCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCce
Confidence 542 1 2235678887621 1111 23567888999642 333 77888776531 1000
Q ss_pred -CCCC---ceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 121 -PQNS---DEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 121 -~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
...+ ....|.|.++..+| |.|+|.| |..+
T Consensus 180 ~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~ 213 (225)
T 1op3_H 180 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 213 (225)
T ss_dssp ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence 1111 23469999999889 9999999 6443
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=105.61 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=92.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC------CCeeE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE------PKMNM 74 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~------~~~~~ 74 (163)
|.|.+.+..+.+.|+|.+. .+.. ... ..++ .. ......|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 27 L~C~~~~~~~~~~w~k~g~-~~~~-~~~----~~~~--~~--~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~ 96 (201)
T 1nkr_A 27 LQCWSDVMFEHFLLHREGM-FNDT-LRL----IGEH--HD--GVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSD 96 (201)
T ss_dssp EEEEESSCCSEEEEEEESS-SCEE-EEE----ECEE--ET--TEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCC
T ss_pred EEEeccCCCCEEEEEECCC-cCCc-cee----eeec--CC--CCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCC
Confidence 5799975339999998432 1111 000 0111 11 123577999999999999999999431 12345
Q ss_pred EEEEEEEcCC--------CceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEec-----CCCCceEEEEecccCcCCCe
Q psy3125 75 AIMLNVDDRG--------RGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIH-----PQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 75 ~~~l~V~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G 140 (163)
.+.|.|.... +...+..|..+.+.|... ......|++++..+.... ........|.|.+++ |+|
T Consensus 97 ~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G 174 (201)
T 1nkr_A 97 PLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGG 174 (201)
T ss_dssp CEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCE
T ss_pred CEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCe
Confidence 6677776531 112466788999999743 335677888875432111 011225679999998 999
Q ss_pred eEEEEc-CCC-----CCccEEEEEEE
Q psy3125 141 IYECQV-NTE-----PKMNMAIMLNV 160 (163)
Q Consensus 141 ~Y~C~a-~~~-----~~~~~~~~L~V 160 (163)
.|+|.| +.. ...+..+.|.|
T Consensus 175 ~Y~C~a~~~~~~~~~s~~S~~~~l~V 200 (201)
T 1nkr_A 175 TYRCFGSFHDSPYEWSKSSDPLLVSV 200 (201)
T ss_dssp EEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred eEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence 999999 432 23466777776
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=111.01 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=99.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEE---ec---ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILT---TN---IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE- 69 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~---~~---~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~- 69 (163)
|.|.+.+.+ +.|.|+|.+...... .. ..... ..+|+.+... ..++++|.|.+++.+|+|.|+|++.+.
T Consensus 19 L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~a~n~~ 97 (308)
T 4fom_A 19 LKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNY-SLNDATITLHNIGFSDSGKYICKAVTFP 97 (308)
T ss_dssp ECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCC-SSSBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeecc-CCCceEEEEccCCHHHCEEEEEEEeeCC
Confidence 689987554 679999854322111 00 01111 1346555432 235678999999999999999999543
Q ss_pred -CCeeEEEEEEEEcCCCc--------eEeeCCCeEEEecC---CCCceeEEEEeCCCeEEEec--CCC---CceEEEEec
Q psy3125 70 -PKMNMAIMLNVDDRGRG--------ARLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVIH--PQN---SDEWNMKID 132 (163)
Q Consensus 70 -~~~~~~~~l~V~~~~~~--------~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~L~i~ 132 (163)
+..+..+.+.+...+.. .....+..+.+.|. ..+.+.+.|++++..+.... ... .....|.|.
T Consensus 98 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~ 177 (308)
T 4fom_A 98 LGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLF 177 (308)
T ss_dssp TEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEEC
T ss_pred CcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEE
Confidence 33445556666554322 22334566778874 24557889998876543221 111 123469999
Q ss_pred ccCcCCCeeEEEEc-CCCCCcc--EEEEEEEe
Q psy3125 133 YAQKRDAGIYECQV-NTEPKMN--MAIMLNVD 161 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a-~~~~~~~--~~~~L~V~ 161 (163)
+++.+|+|.|+|.| |..+... ..+.|.|.
T Consensus 178 ~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~ 209 (308)
T 4fom_A 178 PTRFARGRRITCVVKHPALEKDIRYSFILDIQ 209 (308)
T ss_dssp CCGGGTTCEEEEEEECTTCSSCEEEEEECCCC
T ss_pred eeeecCCccEEEEEEccCCCCceEEeEEEEEe
Confidence 99999999999999 7665544 44555443
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=111.15 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=95.8
Q ss_pred CceEEecCC-CcEEEEEecCCe-e--EEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCC-
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH-I--LTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPK- 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~-~--~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~- 71 (163)
|.|.+.+.+ +.|.|+|.+.+. + +....... ...+|+.+.. ..+..+|.|.+++.+|+|.|+|.+.+ ...
T Consensus 19 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~ 96 (212)
T 1nfd_E 19 ITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAAYYCLSSYGDNNDL 96 (212)
T ss_dssp EEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSEEEEEEEETTTTEE
T ss_pred EEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEEEEEEEEcccCccc
Confidence 689998888 889999864322 1 11111111 1246887765 34578999999999999999999963 221
Q ss_pred -eeEEEEEEEEcC---CCceEe-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEEEecC-----CCC----ceE
Q psy3125 72 -MNMAIMLNVDDR---GRGARL-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFSVIHP-----QNS----DEW 127 (163)
Q Consensus 72 -~~~~~~l~V~~~---~~~~~v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~-----~~~----~~~ 127 (163)
......|.|... ++.+.+ ..|..+.+.|... +. +.+.|++++..+..... ... ...
T Consensus 97 ~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s 176 (212)
T 1nfd_E 97 VFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSS 176 (212)
T ss_dssp EECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEE
T ss_pred ccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEE
Confidence 123455666532 112221 2366788888632 22 67899988764431110 001 124
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
.|.|.+++.+|+|.|+|.| |..+....
T Consensus 177 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 177 YLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp BCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred EEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 4999999999999999999 77655443
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-16 Score=104.64 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=94.7
Q ss_pred CceEE-ecCC--CcEEEEEecCCe---eEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-
Q psy3125 1 MACTV-MGLG--RPVSWMRKRDLH---ILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK- 71 (163)
Q Consensus 1 l~C~~-~~~~--~~v~W~k~~~~~---~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~- 71 (163)
|.|.+ .+.+ +.|.|+|.+.+. .+...... ....+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+...
T Consensus 20 L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 97 (216)
T 2xzc_L 20 ISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDEADYYCGTWDSSLN 97 (216)
T ss_dssp EEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred EEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccCEEEEEEEEeCCCc
Confidence 67995 4553 799999864321 11111111 11245887765 34578999999999999999999965432
Q ss_pred --eeEEEEEEEEcC--CCceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEE------ecCCC-C----c
Q psy3125 72 --MNMAIMLNVDDR--GRGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSV------IHPQN-S----D 125 (163)
Q Consensus 72 --~~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~------~~~~~-~----~ 125 (163)
....+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+.. ..... . .
T Consensus 98 ~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~ 177 (216)
T 2xzc_L 98 PVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSL 177 (216)
T ss_dssp EEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEE
T ss_pred ceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEE
Confidence 233456777533 2222221 256788999642 22 37899987653311 11111 1 1
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
...|.|.++..+|+|.|+|.| |.........
T Consensus 178 ~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 209 (216)
T 2xzc_L 178 SSTLTLSKADYEKHKVYACEVTHQGLSSPVTK 209 (216)
T ss_dssp EEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred EEEEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence 236999999999999999999 6655444333
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=110.37 Aligned_cols=159 Identities=12% Similarity=0.233 Sum_probs=97.2
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Ee---cceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TT---NIYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~---~~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|.+... .+ .. +.... ...+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 99 (253)
T 3liz_H 20 LSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRD 99 (253)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 689998743 899999964322 11 10 00001 1247888876444578999999999999999999995
Q ss_pred CC-----CCeeEEEEEEEE-cCC--Cce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeE--E----EecC-
Q psy3125 68 TE-----PKMNMAIMLNVD-DRG--RGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARF--S----VIHP- 121 (163)
Q Consensus 68 ~~-----~~~~~~~~l~V~-~~~--~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~--~----~~~~- 121 (163)
+. ......+.|.|. ... +.+ .+..|..+.+.|... +.. .+.|+.++... . ....
T Consensus 100 ~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g 179 (253)
T 3liz_H 100 PAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD 179 (253)
T ss_dssp CBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETT
T ss_pred cCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCC
Confidence 43 123344567776 221 111 123467788888532 223 67888776511 0 0111
Q ss_pred CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 122 QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 122 ~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.....+.|.|.++..+| |.|+|.| +..+.....+.|.+
T Consensus 180 ~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~ 218 (253)
T 3liz_H 180 LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP 218 (253)
T ss_dssp EEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred eEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence 01123569999999999 9999999 76666655555544
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=108.19 Aligned_cols=160 Identities=13% Similarity=0.149 Sum_probs=100.2
Q ss_pred CceEEecCC-C-----cEEEEEecCCe---eEEe-cceEecCCCeEEEeccC---CCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-R-----PVSWMRKRDLH---ILTT-NIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~-----~v~W~k~~~~~---~~~~-~~~~~~~~~r~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ + .|.|+|.+... ++.. ....+....|+.+.... ..++++|.|.+++.+|+|.|+|++.
T Consensus 20 L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 99 (313)
T 4fqp_A 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99 (313)
T ss_dssp ECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEe
Confidence 689999877 3 48999853221 1111 12234445677664321 2346789999999999999999985
Q ss_pred CC--CCeeEEEEEEEEcCCC------ceEeeCCCeEEEecC---CCCceeEEEEeCCCeEEEec----CCCC---ceEEE
Q psy3125 68 TE--PKMNMAIMLNVDDRGR------GARLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVIH----PQNS---DEWNM 129 (163)
Q Consensus 68 ~~--~~~~~~~~l~V~~~~~------~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~L 129 (163)
+. +..+..+.|.|...+. ...+..+....+.|. ..+.+.+.|++++..+.... .... ....|
T Consensus 100 ~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l 179 (313)
T 4fqp_A 100 TFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW 179 (313)
T ss_dssp CSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEE
T ss_pred eccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceee
Confidence 43 3445555666555532 223445566666774 23557889998877553221 1111 13469
Q ss_pred EecccCcCCCeeEEEEc-CCCCCccE--EEEEEE
Q psy3125 130 KIDYAQKRDAGIYECQV-NTEPKMNM--AIMLNV 160 (163)
Q Consensus 130 ~i~~v~~~D~G~Y~C~a-~~~~~~~~--~~~L~V 160 (163)
.|.+++.+|+|.|+|.| |..+.... .+.|.|
T Consensus 180 ~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V 213 (313)
T 4fqp_A 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213 (313)
T ss_dssp EECCCGGGTTCEEEEEEECTTSSSCEEEEEECCB
T ss_pred eecccccccCeeEEEEEEccCcCccceeeeeccc
Confidence 99999999999999999 76655444 444444
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=106.07 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=94.0
Q ss_pred CceEEecCC------CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+.+ ..+........ ..+||.+.. ..++++|.|.+++.+|+|.|.|++.+.
T Consensus 54 L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 131 (252)
T 3bkj_L 54 ISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTLRISRVEAEDLGVYYCFQASL 131 (252)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSB
T ss_pred EEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEEEECCCCcccCEEEEEEEEcC
Confidence 689998876 78999986422 11221111111 246887765 345789999999999999999999543
Q ss_pred CC--eeEEEEEEEEcC--CCceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe------cCC-CC---
Q psy3125 70 PK--MNMAIMLNVDDR--GRGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI------HPQ-NS--- 124 (163)
Q Consensus 70 ~~--~~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~------~~~-~~--- 124 (163)
.. ....+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+... ... ..
T Consensus 132 ~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~ 211 (252)
T 3bkj_L 132 VPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY 211 (252)
T ss_dssp SSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCE
T ss_pred CccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCE
Confidence 22 223356777542 2222221 356788899642 22 368999887643211 001 11
Q ss_pred -ceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 125 -DEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 125 -~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
....|.|.+++.+|+|.|+|.| |....
T Consensus 212 ~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 212 SMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp EEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred EEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 1246999999999999999999 65444
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=109.36 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=96.5
Q ss_pred CceEEecCC--C-cEEEEEecCC-e--eEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-
Q psy3125 1 MACTVMGLG--R-PVSWMRKRDL-H--ILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK- 71 (163)
Q Consensus 1 l~C~~~~~~--~-~v~W~k~~~~-~--~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~- 71 (163)
|.|.+.+.+ + .|.|+|.+.+ . .+....... ...+||.+.. ..++.+|.|.+++.+|+|.|+|++.+...
T Consensus 39 L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 116 (234)
T 2j6e_L 39 ISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISGLRSEDEADYYCATWDDSLS 116 (234)
T ss_dssp EEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEESCCSTTCSEEEEEEEETTTT
T ss_pred EEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECCCCHHHCEEEEEEEEcCCcc
Confidence 689999865 3 7999986422 1 122111111 1246887765 34578999999999999999999954332
Q ss_pred ---eeEEEEEEEEcC---CCceEe-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEEE----ec---CCC---C
Q psy3125 72 ---MNMAIMLNVDDR---GRGARL-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFSV----IH---PQN---S 124 (163)
Q Consensus 72 ---~~~~~~l~V~~~---~~~~~v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~----~~---~~~---~ 124 (163)
....+.|.|... ++.+.+ ..|..+.+.|... +. ..+.|++++..+.. .. ... .
T Consensus 117 ~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 196 (234)
T 2j6e_L 117 AVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYA 196 (234)
T ss_dssp EEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCB
T ss_pred eeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEE
Confidence 222345666321 112222 1356788899753 22 37899987654311 00 011 1
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
....|.|.++..+|+|.|+|.| |.......++.
T Consensus 197 ~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 197 ASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp CCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred EEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 2357999999999999999999 77666655553
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=112.00 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=95.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC------CCeeE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE------PKMNM 74 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~------~~~~~ 74 (163)
|.|.+.+.++.+.|+|.+.. +. .+. .. .....+|.|.+++.+|+|.|+|++.+. ...+.
T Consensus 43 L~C~~~~~~~~~~W~k~g~~--~~---------~~~--~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~ 107 (316)
T 3vh8_G 43 LRCHYRHRFNNFMLYKEDRI--HI---------PIF--HG--RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSN 107 (316)
T ss_dssp EEEEBTTBCCSEEEEESSCS--SS---------CHH--HH--CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCC
T ss_pred EEEEccCCCceEEEEeCCCc--cc---------eee--cC--CcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCC
Confidence 57999888889999983221 11 000 00 112456999999999999999998421 12345
Q ss_pred EEEEEEEcCC--------CceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCe
Q psy3125 75 AIMLNVDDRG--------RGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 75 ~~~l~V~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G 140 (163)
.+.|.|.... +...+..|..+.+.|... ......|++++...... .........|.|.+++.+|+|
T Consensus 108 ~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 187 (316)
T 3vh8_G 108 PVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAG 187 (316)
T ss_dssp CEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCE
T ss_pred cEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCc
Confidence 5667776432 112366788899999743 34567788776533111 111234567999999999999
Q ss_pred eEEEEc-CCCCC-----ccEEEEEEEec
Q psy3125 141 IYECQV-NTEPK-----MNMAIMLNVDG 162 (163)
Q Consensus 141 ~Y~C~a-~~~~~-----~~~~~~L~V~~ 162 (163)
.|+|.| |..+. .+..+.|.|.+
T Consensus 188 ~Y~C~a~n~~g~~~~s~~s~~~~l~V~~ 215 (316)
T 3vh8_G 188 TYRCYGSVTHTPYQLSAPSDPLDIVVTG 215 (316)
T ss_dssp EEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred eEEEEEecCCCCccccCCCCCEEEEecC
Confidence 999999 76553 25666777653
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=113.81 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=101.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C-CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P-KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~-~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+|.+ ..+.. .....++.... +.+|.|.+++.+|+|.|+|.+.+. + .....+.
T Consensus 141 l~C~~~~~p~~~v~W~~~~-~~~~~-----~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~ 209 (403)
T 3laf_A 141 LKCEVIGDPMPTIHWQKNQ-QDLNP-----IPGDSRVVVLP-----SGALQISRLQPGDSGVYRCSARNPASTRTGNEAE 209 (403)
T ss_dssp ECCCEECSSCCEEEEEESS-SBCCC-----CTTCCSEEECT-----TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEE
T ss_pred EEEEEcccCCCeEEEEECC-Eeccc-----cCCceEEEEcC-----CceEEEcccccccCEEEEEEEEcCCCceecccee
Confidence 579999999 999999832 21110 11234444432 336999999999999999999542 2 2334456
Q ss_pred EEEEcCC------------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCee
Q psy3125 78 LNVDDRG------------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 78 l~V~~~~------------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~ 141 (163)
|.|...+ ....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.
T Consensus 210 l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 289 (403)
T 3laf_A 210 VRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGT 289 (403)
T ss_dssp EEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEE
T ss_pred EEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEE
Confidence 6665442 23456678889999863 244678898876533211100 0012359999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |..+..+..+.|.|..
T Consensus 290 Y~C~a~n~~g~~~~~~~l~V~~ 311 (403)
T 3laf_A 290 YTCVVTYKNENISASAELTVLV 311 (403)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEcCCCceEEEEEEEEEC
Confidence 99999 8888888888888863
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=112.64 Aligned_cols=150 Identities=9% Similarity=0.196 Sum_probs=95.5
Q ss_pred CceEEecC--C-CcEEEEEecCCe-e--E-Eec---c-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLH-I--L-TTN---I-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~-~--~-~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + +.|.|+|.+.+. + + ... . ... ...+|+.+..+...+.++|.|.+++.+|+|.|+|++.
T Consensus 20 L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 99 (344)
T 1za6_B 20 ISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRS 99 (344)
T ss_dssp EEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEET
T ss_pred EEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEe
Confidence 68999987 3 899999864222 1 1 110 0 001 1257888876434567899999999999999999995
Q ss_pred CCC-CeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe-----cCCCC---
Q psy3125 68 TEP-KMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPDL---LT-TNIYTYTGDARFSVI-----HPQNS--- 124 (163)
Q Consensus 68 ~~~-~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~-----~~~~~--- 124 (163)
+.. .....+.|.|...+ +.+ .+..|..+.+.|... +. ..+.|++++...... .....
T Consensus 100 n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~ 179 (344)
T 1za6_B 100 LNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS 179 (344)
T ss_dssp TTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEE
T ss_pred cCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEE
Confidence 532 33345677776321 111 123677889999642 32 578898776531100 00111
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
....|.|.+++.+| |.|+|.| |..+.
T Consensus 180 ~~s~L~i~~~~~~d-G~Y~C~a~n~~~~ 206 (344)
T 1za6_B 180 LSSVVTVPSSSLGT-QTYICNVNHKPSN 206 (344)
T ss_dssp EEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred EEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 23469999999888 9999999 66554
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=118.27 Aligned_cols=140 Identities=14% Similarity=0.247 Sum_probs=99.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC-CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP-KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~-~~~~~~~ 77 (163)
|.|.+.+ | +.|.|+| ++.. +..+.|+.+.. .+.+|.|.+++.+|+|.|+|.+.+ .+ ..+..+.
T Consensus 131 l~C~~~~-p~~~v~W~~--~g~~-------l~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~ 196 (642)
T 1e07_A 131 FTCEPET-QDATYLWWV--NNQS-------LPVSPRLQLSN----GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196 (642)
T ss_pred EEEECCC-CCeeEEEEE--CCeE-------CCCCCceEEcC----CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEE
Confidence 5799999 7 9999998 3222 22345666543 245799999999999999999954 22 2355677
Q ss_pred EEEEcCCCc-------eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 78 LNVDDRGRG-------ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 78 l~V~~~~~~-------~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
|.|...+.. ..+..|..+.+.|.. .+.+.+.|++++..+. ....|.|.+++.+|+|.|+|.| |
T Consensus 197 l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~-------~~~~L~i~~~~~~d~G~Y~C~a~n 269 (642)
T 1e07_A 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAHN 269 (642)
T ss_pred EEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc-------cCCceEEecccccCCeEEEEEEEe
Confidence 888754322 245667889999974 4456889998776442 1234999999999999999999 7
Q ss_pred CCCCcc--EEEEEEEe
Q psy3125 148 TEPKMN--MAIMLNVD 161 (163)
Q Consensus 148 ~~~~~~--~~~~L~V~ 161 (163)
..+... ..+.|.|.
T Consensus 270 ~~g~~~~s~~~~v~v~ 285 (642)
T 1e07_A 270 SDTGLNRTTVTTITVY 285 (642)
T ss_pred CCCceEEeeeEEEEEE
Confidence 766544 34555554
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=105.10 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=97.5
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEec---ceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTN---IYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~---~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + ..|.|+|.+.+ . ++... ...+. ..+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 21 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 100 (242)
T 1hxm_B 21 LECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW 100 (242)
T ss_dssp EEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeee
Confidence 68999986 5 89999996432 1 22111 11111 357998876443468999999999999999999995
Q ss_pred CCC--------CeeEEEEEEEEcCC------CceE--------eeCCCeEEEecCCC---C-ceeEEEEeCCC-eEEEe-
Q psy3125 68 TEP--------KMNMAIMLNVDDRG------RGAR--------LSAGPLLNFAFPDL---L-TTNIYTYTGDA-RFSVI- 119 (163)
Q Consensus 68 ~~~--------~~~~~~~l~V~~~~------~~~~--------v~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~~~- 119 (163)
+.. .....+.|.|...+ +.+. +..|..+.+.|... + ...+.|++++. .+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~ 180 (242)
T 1hxm_B 101 EAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQ 180 (242)
T ss_dssp EECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCE
T ss_pred cCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCcc
Confidence 432 12235678887631 1121 22367788888642 3 26788988775 22100
Q ss_pred -----cCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 120 -----HPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 120 -----~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
...+ .....|.|.++.. | |.|+|.| +..+.......+
T Consensus 181 ~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~ 225 (242)
T 1hxm_B 181 EGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEI 225 (242)
T ss_dssp ECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEE
T ss_pred ccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEe
Confidence 1111 1134699988876 5 9999999 766655444443
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=113.11 Aligned_cols=151 Identities=13% Similarity=0.260 Sum_probs=91.9
Q ss_pred CceEEec-CC-C-cEEEEEecCCeeEEecce---E--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC
Q psy3125 1 MACTVMG-LG-R-PVSWMRKRDLHILTTNIY---T--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK 71 (163)
Q Consensus 1 l~C~~~~-~~-~-~v~W~k~~~~~~~~~~~~---~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~ 71 (163)
|.|.+.+ .| + .|.|+| ++..+..+.. . ...+++|.. ..+|.|.+++.+|+|.|+|.+.+ ...
T Consensus 136 l~C~~~g~~p~~~~v~W~k--~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 206 (438)
T 1qgc_4 136 VVCFLNNFYPKDINVKWKI--DGSERQNGVLNSWTDQDSKDSTYSM-------SSTLTLTKDEYERHNSYTCEATHKTST 206 (438)
T ss_dssp EEEEEEEEBSSCEEEEEEE--TTEEECTTEEEEEECCCTTTCCEEE-------EEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred EEEEEccccCCCcEEEEEE--CCEEcCCCceeccccccCCCCcEEE-------EEEEEEeCcccCCCCeEEEEEEecccC
Confidence 5799987 56 6 899998 4333321100 0 011222222 34699999999999999999954 333
Q ss_pred eeEEEEEE-------EEcCCCceEeeCCCeEEEecCCC--C--ceeEEEEeC--CC-----------------------e
Q psy3125 72 MNMAIMLN-------VDDRGRGARLSAGPLLNFAFPDL--L--TTNIYTYTG--DA-----------------------R 115 (163)
Q Consensus 72 ~~~~~~l~-------V~~~~~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~--~~-----------------------~ 115 (163)
......+. +.. +....+..|..+.+.|... + ...+.|++. +. |
T Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r 285 (438)
T 1qgc_4 207 SPIVKSFNRNECEVMLVE-SGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGR 285 (438)
T ss_dssp SCEEEEEETTC-CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTT
T ss_pred CceecccccccceeEEec-CCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCc
Confidence 22222221 111 2345677889999999642 2 457888875 22 2
Q ss_pred EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-----CccEEEEEEEe
Q psy3125 116 FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-----KMNMAIMLNVD 161 (163)
Q Consensus 116 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-----~~~~~~~L~V~ 161 (163)
+.+..........|.|.+++.+|+|.|+|.| |..+ .....+.|.|.
T Consensus 286 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~ 337 (438)
T 1qgc_4 286 FTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVS 337 (438)
T ss_dssp EEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred EEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence 3322222233568999999999999999999 6332 33344566664
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=111.00 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=94.1
Q ss_pred CceEEecC-C-CcEEEEEecCC--eeEEecceEecCCCeEEEeccCC---CCeEEEEEcccCcCCCeeEEEEeeCCCC--
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL--HILTTNIYTYTGDARFSVIHPQN---SDEWNMKIDYAQKRDAGIYECQVNTEPK-- 71 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~--~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-- 71 (163)
|.|.+.+. | +.|.|+|.+.. ..+..... ...+|+.+..... ....+|.|.+++.+|+|.|+|.+.+...
T Consensus 23 L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 100 (327)
T 2wng_A 23 LHCTVTSLIPVGPIQWFRGAGPARELIYNQKE--GHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPD 100 (327)
T ss_dssp ECCEESCCCSCCCEEEEESCSTTCEEEEETTS--SCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTC
T ss_pred EEEEccCcCCCceEEEEECCCCCceEEEEcCC--CCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcc
Confidence 68999998 7 99999984322 11111110 1234666553211 3567899999999999999999954321
Q ss_pred ----eeEEEEEEEEcCCCce-------EeeCCCeEEEecCCC--Cc--eeEEEEeCCCeEEEe-----cC-CC---CceE
Q psy3125 72 ----MNMAIMLNVDDRGRGA-------RLSAGPLLNFAFPDL--LT--TNIYTYTGDARFSVI-----HP-QN---SDEW 127 (163)
Q Consensus 72 ----~~~~~~l~V~~~~~~~-------~v~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~-----~~-~~---~~~~ 127 (163)
....+.|.|...+..+ .+..|..+.+.|... +. ..+.|++++..+... .. .. ....
T Consensus 101 ~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s 180 (327)
T 2wng_A 101 TEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHS 180 (327)
T ss_dssp EEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEE
T ss_pred eeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEE
Confidence 1245678887664332 345678889999632 22 378899886543211 11 11 1133
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
.|.|.....+|+|.|+|.| |..+.
T Consensus 181 ~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 181 TAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp EEEEECCTTGGGCEEEEEEECTTSC
T ss_pred EEEEechhcCcCceEEEEEeccccC
Confidence 5888888888899999999 66554
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=104.53 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=94.6
Q ss_pred CceEEecCC----CcEEEEEecC-Cee--EEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRD-LHI--LTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~-~~~--~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~ 71 (163)
|.|.+.+.+ +.|.|+|.+. ..+ +....... ...+||.+.. ..+..+|.|.+++.+|+|.|.|.+.+...
T Consensus 20 L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 97 (212)
T 1q0x_L 20 LTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTEDEAIYFCALWSNNK 97 (212)
T ss_dssp EEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred EEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccCCEEEEEEEecCch
Confidence 689999865 6899998642 221 11111111 1246887765 34578999999999999999999965332
Q ss_pred --eeEEEEEEEEcC---CCceEe-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEEE-------ecCCC---Cc
Q psy3125 72 --MNMAIMLNVDDR---GRGARL-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFSV-------IHPQN---SD 125 (163)
Q Consensus 72 --~~~~~~l~V~~~---~~~~~v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~-------~~~~~---~~ 125 (163)
....+.|.|... ++.+.+ ..|..+.+.|... +. ..+.|++++..+.. ..... ..
T Consensus 98 ~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~ 177 (212)
T 1q0x_L 98 LVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMA 177 (212)
T ss_dssp EEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE
T ss_pred hhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEE
Confidence 233445666422 222222 1466888999642 22 37899987654321 00111 12
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
...|.|.++..+|+|.|+|.| +.......
T Consensus 178 ~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 178 SSYLTLTARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp EEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred EEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence 346999999999999999999 66544333
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=124.54 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=102.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|+| ++..+. .+.++.+... .....+|.|.+++.+|+|.|+|.+. ..+.....+.
T Consensus 639 L~C~~~~~~~~~~i~W~~--~g~~l~-------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 708 (816)
T 3dmk_A 639 LHCSVPGGDLPLNIDWTL--DGQAIS-------EDLGITTSRV-GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708 (816)
T ss_dssp EEEBCCCSSSCCEEEEEE--TTBCCC-------GGGTCEEEEE-TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEeCCCCCCEEEEEE--CCeEcC-------CCCCeeEEEc-CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence 579998666 5899998 332221 1223333221 2346789999999999999999994 4555666777
Q ss_pred EEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEE-----EecCC--CCceEEEEecccCcCCCeeE
Q psy3125 78 LNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS-----VIHPQ--NSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 78 l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~L~i~~v~~~D~G~Y 142 (163)
|.|..+ +....+..|..+.+.|.. .+.+.+.|++++.... +.... ......|.|.+++.+|+|.|
T Consensus 709 l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 788 (816)
T 3dmk_A 709 LNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788 (816)
T ss_dssp ECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEE
T ss_pred EEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEE
Confidence 777654 334566778889999964 3556788887643210 00000 00123699999999999999
Q ss_pred EEEc-CCCCCccEEEEEEEe
Q psy3125 143 ECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 143 ~C~a-~~~~~~~~~~~L~V~ 161 (163)
+|.| |..|.....+.+...
T Consensus 789 ~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 789 LCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp EEEEECSSSSCEEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEEEEe
Confidence 9999 999999888876543
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=114.60 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=92.8
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|+|.+....+. .....|+.... .+|.|.+++.+|+|.|+|.+.+ .+.....+.
T Consensus 25 L~C~~~~~~~~~~v~W~k~~~~~~~~-----~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 93 (315)
T 1itb_B 25 RPCPLNPNEHKGTITWYKDDSKTPVS-----TEQASRIHQHK------EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 93 (315)
T ss_dssp CBCCCCSCCCSSCCCEECTTSCSCSC-----CCTTSSSEECS------SBEECTTCCGGGCSCCEECCCSSSCCCCEECC
T ss_pred EEeeccCcCCCceEEEEeCCCcCccc-----cccCCcEeccC------CeEEECCCChhhCEEEEEEEeCCceEEEEEEE
Confidence 689999887 899999843211110 11244555432 2699999999999999999943 444455555
Q ss_pred EEEEcCCCc----------eEeeCCCeEEEecCC--------CCceeEEEEeCCCeEEEecC-CCCceEEEEecccCcCC
Q psy3125 78 LNVDDRGRG----------ARLSAGPLLNFAFPD--------LLTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 78 l~V~~~~~~----------~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D 138 (163)
+.|...++. ..+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|
T Consensus 94 v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d 173 (315)
T 1itb_B 94 AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH 173 (315)
T ss_dssp CEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGG
T ss_pred EEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehh
Confidence 565543222 346678889999964 34568899988765421110 01112369999999999
Q ss_pred CeeEEEEc-C-CCCCc
Q psy3125 139 AGIYECQV-N-TEPKM 152 (163)
Q Consensus 139 ~G~Y~C~a-~-~~~~~ 152 (163)
+|.|+|.| + ..+..
T Consensus 174 ~G~Y~C~a~~n~~g~~ 189 (315)
T 1itb_B 174 RGNYTCHASYTYLGKQ 189 (315)
T ss_dssp CEEEEEEEEEEETTEE
T ss_pred CcEEEEEEEcCCCCcE
Confidence 99999999 3 44544
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=104.88 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=93.0
Q ss_pred CceEEecCC-CcEEEEEecCC----eeEEec---ceEecC---CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL----HILTTN---IYTYTG---DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~----~~~~~~---~~~~~~---~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.... .++... ...... .+|+.+... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus 21 L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 99 (246)
T 4dzb_B 21 IECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVTSAHPEDSSFYICSARTS 99 (246)
T ss_dssp EEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred EEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 689999999 99999984321 122211 111111 268888753 245889999999999999999999532
Q ss_pred C-----CeeEEEEEEEEcC-----CCceEe--------eCCCeEEEecCCC---C-ceeEEEEeCCCeEEEe----cCC-
Q psy3125 70 P-----KMNMAIMLNVDDR-----GRGARL--------SAGPLLNFAFPDL---L-TTNIYTYTGDARFSVI----HPQ- 122 (163)
Q Consensus 70 ~-----~~~~~~~l~V~~~-----~~~~~v--------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~----~~~- 122 (163)
. .....+.|.|... ++.+.+ ..|..+.+.|... + ...+.|++++..+... ...
T Consensus 100 ~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 179 (246)
T 4dzb_B 100 GDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPL 179 (246)
T ss_dssp SGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCE
T ss_pred CCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccc
Confidence 1 2334556777741 122222 2267788889632 1 2378898876543210 000
Q ss_pred ------CCc----eEEEEecccCcCC-CeeEEEEc-CCC
Q psy3125 123 ------NSD----EWNMKIDYAQKRD-AGIYECQV-NTE 149 (163)
Q Consensus 123 ------~~~----~~~L~i~~v~~~D-~G~Y~C~a-~~~ 149 (163)
... ...|.|.....+| +|.|+|.| +..
T Consensus 180 ~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~ 218 (246)
T 4dzb_B 180 KEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 218 (246)
T ss_dssp ESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred cccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecC
Confidence 111 2348999998888 99999999 553
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=104.43 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=95.5
Q ss_pred CceEEecCC-----CcEEEEEecCCe----eEEe---cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLH----ILTT---NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~----~~~~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.+.+ +.|.|+|.+.+. ++.. +...+. ..+|+.+..+...++++|.|.+++.+|+|.|.|++
T Consensus 20 L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 99 (228)
T 3bae_H 20 LTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTADTATYYCAR 99 (228)
T ss_dssp EEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEE
Confidence 689999876 679999864221 1211 111111 24689887644445799999999999999999999
Q ss_pred eCCC----------CeeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeE---EEe
Q psy3125 67 NTEP----------KMNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARF---SVI 119 (163)
Q Consensus 67 ~~~~----------~~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~---~~~ 119 (163)
.+.. .....+.|.|... ++.+ .+..|..+.+.|... +.+ .+.|++++... ...
T Consensus 100 ~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~ 179 (228)
T 3bae_H 100 RGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP 179 (228)
T ss_dssp EEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEE
T ss_pred ecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcC
Confidence 5432 1123467777742 1111 123577888899642 333 78888776531 100
Q ss_pred --cCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 120 --HPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 120 --~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.... .....|.|.++..+| |.|+|.| |..+.......
T Consensus 180 ~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 180 AVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK 221 (228)
T ss_dssp EEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred ceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence 0011 123469999998866 9999999 76665444333
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=103.67 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=93.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+..+ ...|+.+... ....+|.|.+++.+|+|.|.|.+ +..+.....+.|
T Consensus 38 l~C~~~g~p~p~i~W~~--~g~~l~~~-----~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 108 (215)
T 3mtr_A 38 ITCEVFAYPSATISWFR--DGQLLPSS-----NYSNIKIYNT--PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108 (215)
T ss_dssp EEEEEEEESCCEEEEEE--TTEESSCS-----SSCSEEEEEE--TTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeecCCCEEEEEE--CCeECCCC-----CCccEEEecC--CCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEE
Confidence 689999999 9999998 33322211 1246666542 34788999999999999999999 445666677778
Q ss_pred EEEcCCCceEe----eCCCeEEEecCCC-----Cce---eEEEEeCCCe-EEE---ecCCCCceEEEEecccCcCCCeeE
Q psy3125 79 NVDDRGRGARL----SAGPLLNFAFPDL-----LTT---NIYTYTGDAR-FSV---IHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 79 ~V~~~~~~~~v----~~~~~~~~~~~~~-----~~~---~~~~~~~~~~-~~~---~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
.|..++..+.. ..+..+.+.|... ... .+.|...+.. +.. ..........|.|.++...|.|.|
T Consensus 109 ~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~ 188 (215)
T 3mtr_A 109 VQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAV 188 (215)
T ss_dssp EECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEE
T ss_pred EECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEE
Confidence 88766433221 1233444444211 111 2344443321 110 000001124699999999999999
Q ss_pred EEEc-CCCCCccEEEEEEEe
Q psy3125 143 ECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 143 ~C~a-~~~~~~~~~~~L~V~ 161 (163)
+|.| |..|....+..+.|.
T Consensus 189 ~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 189 RLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp EEEEEESSCBCCCCCCEEEE
T ss_pred EEEEEeCCcccCcccceeeE
Confidence 9999 887766555554443
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=104.60 Aligned_cols=159 Identities=11% Similarity=0.181 Sum_probs=95.1
Q ss_pred CceEEecCC---CcE--EEEEecCCe---eE-Ee--cce---E---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEE
Q psy3125 1 MACTVMGLG---RPV--SWMRKRDLH---IL-TT--NIY---T---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63 (163)
Q Consensus 1 l~C~~~~~~---~~v--~W~k~~~~~---~~-~~--~~~---~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 63 (163)
|.|.+.+.+ ..+ .|+|..... .+ .. .+. . ....+||.+..+...++++|.|.+++.+|+|.|.
T Consensus 20 L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~ 99 (232)
T 3qhz_H 20 LTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMDPVDTATYY 99 (232)
T ss_dssp EEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCChhhCEEEE
Confidence 689998643 455 999864321 12 11 111 0 1124699888655567899999999999999999
Q ss_pred EEeeCC---------CCeeEEEEEEEEcC-C--Cce-------EeeCCCeEEEecCCC---C-ceeEEEEeCCCeE--E-
Q psy3125 64 CQVNTE---------PKMNMAIMLNVDDR-G--RGA-------RLSAGPLLNFAFPDL---L-TTNIYTYTGDARF--S- 117 (163)
Q Consensus 64 C~~~~~---------~~~~~~~~l~V~~~-~--~~~-------~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~--~- 117 (163)
|.+.+. ......+.|.|... . +.+ .+..|..+.+.|... + ...+.|++++... .
T Consensus 100 C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~ 179 (232)
T 3qhz_H 100 CARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT 179 (232)
T ss_dssp EEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred EEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceee
Confidence 999643 22334456777521 1 111 123466788888532 2 3346687766421 1
Q ss_pred ---EecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 118 ---VIHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 118 ---~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...... ...+.|.|.+...+| |.|+|.| +..+.......|.+
T Consensus 180 ~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 180 FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 011111 123469999999999 9999999 76666666666654
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=114.59 Aligned_cols=152 Identities=11% Similarity=0.170 Sum_probs=96.1
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Ee---cc-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TT---NI-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~---~~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+. .+ .. +. ... ...+|+.+..+...+.++|.|.+++.+|+|.|+|++.
T Consensus 20 L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 99 (457)
T 1hzh_H 20 VSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARV 99 (457)
T ss_dssp ECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEe
Confidence 689999874 789999864321 11 11 11 111 1257898876434567899999999999999999995
Q ss_pred CCC-------------CeeEEEEEEEEcCC---Cc-------eEeeCCCeEEEecCCC---Cc-eeEEEEeCCCe-----
Q psy3125 68 TEP-------------KMNMAIMLNVDDRG---RG-------ARLSAGPLLNFAFPDL---LT-TNIYTYTGDAR----- 115 (163)
Q Consensus 68 ~~~-------------~~~~~~~l~V~~~~---~~-------~~v~~~~~~~~~~~~~---~~-~~~~~~~~~~~----- 115 (163)
+.. .....+.|.|.... +. ..+..|..+.+.|... +. ..+.|++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~ 179 (457)
T 1hzh_H 100 GPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT 179 (457)
T ss_dssp CCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEE
T ss_pred cCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceE
Confidence 432 22345567776421 11 1234677889999632 22 56888877632
Q ss_pred EEEecCCCC---ceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 116 FSVIHPQNS---DEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 116 ~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
+........ ....|.|.+++.+| |.|+|.| |..+...
T Consensus 180 ~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~ 220 (457)
T 1hzh_H 180 FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 220 (457)
T ss_dssp EEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE
T ss_pred cCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc
Confidence 111111111 23469999999999 9999999 6555433
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=120.94 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=104.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC-CC-CeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT-EP-KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~-~~-~~~~~~ 76 (163)
|.|.+.+.| +.|.|+| ++..+ ....++.+.. +.+|.|.++. .+|+|.|+|.+.+ .+ ..+..+
T Consensus 546 l~C~~~g~p~~~i~W~k--~~~~l-------~~~~~~~~~~-----~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~ 611 (816)
T 3dmk_A 546 VTCPVAGYPIDSIVWER--DNRAL-------PINRKQKVFP-----NGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611 (816)
T ss_dssp EECCEECSSEEEEEEEE--TTEES-------CCSTTEEECT-----TSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEE
T ss_pred EEEEecCCCCCEEEEEE--CCeEc-------ccCCceEEec-----CCeEEEEecCccccCEEEEEEEEECCCceeeeeE
Confidence 579999999 9999998 33222 2334444432 3479999998 6999999999954 33 234556
Q ss_pred EEEEEcCCC-------ceEeeCCCeEEEecCCC---CceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCe
Q psy3125 77 MLNVDDRGR-------GARLSAGPLLNFAFPDL---LTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 77 ~l~V~~~~~-------~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G 140 (163)
.|.|..++. ...+..|..+.+.|... ....+.|++++..+. ... .......|.|.+++.+|+|
T Consensus 612 ~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G 690 (816)
T 3dmk_A 612 EVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR-VGRRGSVLTIEAVEASHAG 690 (816)
T ss_dssp EEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEE-ETTTEEEEEEESCCGGGCE
T ss_pred EEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEE-cCCCeeEEEEccCChhhCE
Confidence 677765532 23466788999999742 234789998876432 111 1234567999999999999
Q ss_pred eEEEEc-CCCCCccEEEEEEEec
Q psy3125 141 IYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 141 ~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.|+|.| |..|..+..+.|.|..
T Consensus 691 ~Y~C~a~N~~g~~~~~~~l~V~~ 713 (816)
T 3dmk_A 691 NFTCHARNLAGHQQFTTPLNVYV 713 (816)
T ss_dssp EEEEEEECSSCEEEEEEEECEEE
T ss_pred EEEEEEEeCCccEEEEEEEEEEe
Confidence 999999 8889988888888763
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-18 Score=132.78 Aligned_cols=162 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEec-C-CCeE--------EEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYT-G-DARF--------SVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT- 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~-~-~~r~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~- 68 (163)
|.|.+.+.| +.|.|+|.+.. +......... . ..++ .+.........+|.|.+++.+|+|.|+|.+.+
T Consensus 569 l~C~~~~~p~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 647 (772)
T 3v2a_R 569 LWCTADRSTFENLTWYKLGPQ-PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDR 647 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeccCCCCCCcEEEEcCCc-ccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeC
Confidence 689999999 99999984322 2111100000 0 0000 00111112345699999999999999999954
Q ss_pred CCC--eeEEEEEEEE--cCC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEeccc
Q psy3125 69 EPK--MNMAIMLNVD--DRG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYA 134 (163)
Q Consensus 69 ~~~--~~~~~~l~V~--~~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v 134 (163)
.+. .+....|.|. .++ ....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.++
T Consensus 648 ~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v 727 (772)
T 3v2a_R 648 KTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRV 727 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcC
Confidence 222 1233444443 222 22345668888899964 34568899988765432211 1122467999999
Q ss_pred CcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 135 QKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
+.+|+|.|+|.| |..|..+.++.|.|.++
T Consensus 728 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 757 (772)
T 3v2a_R 728 RKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757 (772)
T ss_dssp ------------------------------
T ss_pred CHHHCEEEEEEEEeCCcceeEEEEEEEECC
Confidence 999999999999 99999999999999874
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=112.49 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=83.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|++.+ ..+ ....++... .....+|.|.+++.+|+|.|+|.+.+ .+.....+.|
T Consensus 68 L~C~v~g~P~p~i~W~~~~--~~l-------~~~~~~~~~---~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 135 (423)
T 3qs7_E 68 LQVLVDAPGNISCLWVFKH--SSL-------NCQPHFDLQ---NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135 (423)
T ss_dssp EEEECSCCSSCEEEEEETT--EEE-------CCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEcCCCCeEEEEECC--Ccc-------Cccceeccc---cceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 689999999 999999832 111 111111100 12245799999999999999999954 4555666777
Q ss_pred EEEcCCCc-----eEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCCCCceEEEEec-ccCcCCCeeEEEEc-CCC
Q psy3125 79 NVDDRGRG-----ARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQNSDEWNMKID-YAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 79 ~V~~~~~~-----~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~v~~~D~G~Y~C~a-~~~ 149 (163)
.|..++.. ..+..+....+.|. ..+.+.+.|++++......... .....+... -.+..|+|.|+|.| |..
T Consensus 136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~~~~~~~~~~l~~~d~G~Y~C~A~N~~ 214 (423)
T 3qs7_E 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SPAVVKKEEKVLHELFGTDIRCCARNEL 214 (423)
T ss_dssp EEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEEEEEECSS
T ss_pred EEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-ccccccccceEEecccCeEEEEEEEcCC
Confidence 77643211 12334555567775 3566788998876532111000 000011111 12678999999999 887
Q ss_pred CCccE-EEEEEEe
Q psy3125 150 PKMNM-AIMLNVD 161 (163)
Q Consensus 150 ~~~~~-~~~L~V~ 161 (163)
|.... .+.|.|.
T Consensus 215 G~~~~~~~~l~V~ 227 (423)
T 3qs7_E 215 GRECTRLFTIDLN 227 (423)
T ss_dssp CEEEEECEEEESS
T ss_pred CCcceeeEEEEEe
Confidence 76543 4667664
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=106.42 Aligned_cols=148 Identities=12% Similarity=0.177 Sum_probs=92.2
Q ss_pred CceEEecCC---CcEEEEEecCCe-e--E-Ee----cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH-I--L-TT----NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~-~--~-~~----~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+... + + .. +...+ ...+|+.+..+...++++|.|.+++.+|+|.|.|++.
T Consensus 26 L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 105 (261)
T 2xqy_G 26 MSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRL 105 (261)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEe
Confidence 689999875 899999964321 1 1 11 11111 1257898876433457899999999999999999996
Q ss_pred CCC----CeeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cc-eeEEEEeCCCeEEEecC-----CC-
Q psy3125 68 TEP----KMNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LT-TNIYTYTGDARFSVIHP-----QN- 123 (163)
Q Consensus 68 ~~~----~~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~-----~~- 123 (163)
+.. .....+.|.|... ++.+ .+..|..+.+.|... +. ..+.|++++..+..... ..
T Consensus 106 ~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~ 185 (261)
T 2xqy_G 106 GYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 185 (261)
T ss_dssp CTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTE
T ss_pred cCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCc
Confidence 542 1223456777642 1111 123467788888642 33 37888877653211100 01
Q ss_pred -CceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 124 -SDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 124 -~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.....|.|.++..+| |.|+|.| +..
T Consensus 186 ~~~~s~L~i~~~~~~~-g~YtC~v~n~~ 212 (261)
T 2xqy_G 186 YTLSSSVTVTSSTWPS-QSITCNVAHPA 212 (261)
T ss_dssp EEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred EEEEEEEEEeccccCC-CEEEEEEEECC
Confidence 123569999999888 9999999 543
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-17 Score=116.38 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=98.3
Q ss_pred CceE-----EecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC---
Q psy3125 1 MACT-----VMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--- 70 (163)
Q Consensus 1 l~C~-----~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--- 70 (163)
|.|. +.+.| +.|.|+| ++..+. ....++.+.. +..+|.|.+++.+|+|.|+|.+.+ .+
T Consensus 140 l~C~~~~~~~~g~p~~~v~W~k--~g~~~~------~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 207 (339)
T 3o4o_C 140 LVCPDLSEFTRDKTDVKIQWYK--DSLLLD------KDNEKFLSVR----GTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207 (339)
T ss_dssp EECCSCTTTCCSSSCCCBCCEE--SSCBCC------TTCSSEEECT----TSSEEEESSCCGGGCEEEEEEEECCBTTBC
T ss_pred EEecCCcccccCCCCceEEEec--CCeeCC------CCCceeEEcC----CcceEEEcccCHhhCeEEEEEEEECCCCeE
Confidence 5788 77888 9999998 332221 1234666553 235799999999999999999954 22
Q ss_pred -CeeEEEEEEEEcCC-----------CceEeeCCCeEEEecCC---C--C-ceeEEEEeCCCe---------EEEecC--
Q psy3125 71 -KMNMAIMLNVDDRG-----------RGARLSAGPLLNFAFPD---L--L-TTNIYTYTGDAR---------FSVIHP-- 121 (163)
Q Consensus 71 -~~~~~~~l~V~~~~-----------~~~~v~~~~~~~~~~~~---~--~-~~~~~~~~~~~~---------~~~~~~-- 121 (163)
..+..+.|.|...+ ....+..|..+.+.|.. . + ...+.|+.++.. +.....
T Consensus 208 ~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~ 287 (339)
T 3o4o_C 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQE 287 (339)
T ss_dssp CEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEE
T ss_pred EEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEE
Confidence 34567778887432 22234567778888865 2 3 456677765542 221110
Q ss_pred --CCCc---eEEEEecccCcCCC-eeEEEEc-CCCCCccEEEEEEE
Q psy3125 122 --QNSD---EWNMKIDYAQKRDA-GIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 122 --~~~~---~~~L~i~~v~~~D~-G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.... ...|.|.+++.+|+ |.|+|.| |..|..+..+.|.+
T Consensus 288 ~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred ecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence 0111 22699999999998 9999999 98888887766654
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=112.44 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=93.2
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee---E
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN---M 74 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~---~ 74 (163)
|.|.+. +.+ +.+.|++ +...+ ..+.|..+.. .+.+|.|.+++.+|+|.|+|.+.+ ..... .
T Consensus 122 l~C~~~~~~~~~~~~W~~--~~~~~-------~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 188 (384)
T 3kld_A 122 LLCGPPPHSGELSYAWIF--NEYPS-------YQDNRRFVSQ----ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188 (384)
T ss_dssp ECCCCCSEESCEEEEEEE--TTEEC-------CCSSSEEECT----TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECC
T ss_pred EecCCCCCCCCeEEEEEE--CCCCC-------EeeccEEEEc----CCCcEEEeecCHHHCceEEEEEecccccceeeCC
Confidence 356544 334 7899998 32221 1233332222 244699999999999999999943 22211 1
Q ss_pred EEEEEEE--------------cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcC
Q psy3125 75 AIMLNVD--------------DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 75 ~~~l~V~--------------~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~ 137 (163)
...+.+. ..+....+..|..+.+.|.. .+.+.+.|++.+....... ........|.|.+++.+
T Consensus 189 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~ 268 (384)
T 3kld_A 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQE 268 (384)
T ss_dssp CEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGG
T ss_pred ceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChh
Confidence 1112211 11234456778889999963 3556788987554221110 01122446999999999
Q ss_pred CCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 138 DAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.|+|.| |..|.....+.|.|..
T Consensus 269 D~G~Y~C~a~N~~G~~~~~~~l~v~~ 294 (384)
T 3kld_A 269 DAGSYECVAENSRGKNVAKGQLTFYA 294 (384)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 999999999 8889888888888753
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=111.54 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=91.3
Q ss_pred CceEEecC---------C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeCC
Q psy3125 1 MACTVMGL---------G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~---------~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~ 69 (163)
|.|.+.+. | +.|.|+|.+.. +.. ..|. .. +.+|.|.+++.+|+| .|+|.+.+.
T Consensus 49 L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~-~~~--------~~~~-~~------~~~L~i~~v~~~D~Gs~Y~C~a~n~ 112 (329)
T 3oq3_B 49 AKCPPIEDSLLSHRYNDKDNVVNWEKIGKT-RRP--------LNRR-VK------NGDLWIANYTSNDSHRRYLCTVTTK 112 (329)
T ss_dssp ECCHHHHCTTTGGGSCCTTCEEEEEECSSS-CEE--------CSTT-EE------TTEEEESSCCGGGGGCCEEEEEECT
T ss_pred EEccCCCCccccccccCCCCeeEEEECCCC-ccc--------cCce-ee------cceEEEcCCChHhCCCcEEEEEEeC
Confidence 56887773 5 79999983322 111 1222 11 346999999999999 999999553
Q ss_pred -CCeeEEEEEEEEcCCCce-------EeeCCCeEEEecCC--CC-ceeEEEEeCCCeEEEecCC-CCceEEEEecccCcC
Q psy3125 70 -PKMNMAIMLNVDDRGRGA-------RLSAGPLLNFAFPD--LL-TTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKR 137 (163)
Q Consensus 70 -~~~~~~~~l~V~~~~~~~-------~v~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~ 137 (163)
+.......+.|...++.. .+..|..+.+.|.. .+ .+.+.|++++..+...... ......|.|.+++.+
T Consensus 113 ~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~ 192 (329)
T 3oq3_B 113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE 192 (329)
T ss_dssp TSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGG
T ss_pred CCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChh
Confidence 333333333444332221 13347789999964 34 5688999887644211100 011246999999999
Q ss_pred CCeeEEEEc-CC--CCCccEE----EEEEEec
Q psy3125 138 DAGIYECQV-NT--EPKMNMA----IMLNVDG 162 (163)
Q Consensus 138 D~G~Y~C~a-~~--~~~~~~~----~~L~V~~ 162 (163)
|+|.|+|.| |. .+..... +.|.|..
T Consensus 193 D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~ 224 (329)
T 3oq3_B 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIP 224 (329)
T ss_dssp GCEEEEEEEEECCTTSSSCEEEEEEEEEEEEC
T ss_pred hCEEEEEEEEecccCCCceeEEEeeEEEEEEC
Confidence 999999999 65 5544444 6777754
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=113.34 Aligned_cols=151 Identities=12% Similarity=0.160 Sum_probs=95.9
Q ss_pred CceEEecCC-C----cEEEEEecCCe---eEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG-R----PVSWMRKRDLH---ILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~-~----~v~W~k~~~~~---~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+.+ + .|.|+|.+.+. .+...... ....+|+.+.. ..+..+|.|.+++.+|+|.|+|++.+..
T Consensus 21 L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 98 (438)
T 1qgc_4 21 ISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTIDPVEADDVATYYCQQSNEV 98 (438)
T ss_dssp EEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSST
T ss_pred EEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeCCCcCcCCeeEEEEEecCC
Confidence 689999888 4 89999864221 11111111 11246887765 3457899999999999999999995432
Q ss_pred --CeeEEEEEEEEcC--CCceEee-------CCCeEEEecCC---CCce-eEEEEeCCCeEEE------ec--CCCC---
Q psy3125 71 --KMNMAIMLNVDDR--GRGARLS-------AGPLLNFAFPD---LLTT-NIYTYTGDARFSV------IH--PQNS--- 124 (163)
Q Consensus 71 --~~~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~------~~--~~~~--- 124 (163)
.....+.|.|... ++.+.+. .|..+.+.|.. .+.+ .+.|++++..+.. .. ....
T Consensus 99 ~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~ 178 (438)
T 1qgc_4 99 PLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS 178 (438)
T ss_dssp TCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEE
T ss_pred CccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEE
Confidence 2244556676542 2222221 25578899964 2333 7899987653321 11 1111
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
....|.|.+++.+|+|.|+|.| |..+...
T Consensus 179 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 208 (438)
T 1qgc_4 179 MSSTLTLTKDEYERHNSYTCEATHKTSTSP 208 (438)
T ss_dssp EEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred EEEEEEEeCcccCCCCeEEEEEEecccCCc
Confidence 1357999999999999999999 7666543
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=101.72 Aligned_cols=159 Identities=11% Similarity=0.181 Sum_probs=96.7
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Eecc---e-E--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TTNI---Y-T--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~~~---~-~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|..... .+ .... . . ....+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 99 (230)
T 3n9g_H 20 VSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARD 99 (230)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEc
Confidence 689998743 889999864321 11 1111 0 1 11247999887655678999999999999999999996
Q ss_pred CCC---------CeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCCC---C-ceeEEEEeCCCe---EEE---
Q psy3125 68 TEP---------KMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPDL---L-TTNIYTYTGDAR---FSV--- 118 (163)
Q Consensus 68 ~~~---------~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~---~~~--- 118 (163)
+.. .....+.|.|...+ +.+ .+..|..+.+.|... + ...+.| ..... ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-~~~~~~~~~~~~~~ 178 (230)
T 3n9g_H 100 WGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-NSGALTSGVHTFPA 178 (230)
T ss_dssp CCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-GGGTBCTTEEECCC
T ss_pred cCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-CCcccCCCeEeCCc
Confidence 532 12244567775321 111 123567788888532 2 334677 22211 110
Q ss_pred -ecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 119 -IHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 119 -~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..... ...+.|.|.+...+| |.|+|.| +..+.......|.|.
T Consensus 179 ~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 179 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp EECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred eECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 11111 123469999999999 9999999 666666666666554
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=104.08 Aligned_cols=159 Identities=13% Similarity=0.179 Sum_probs=95.0
Q ss_pred CceEEecCC-C----cEEEEEecCC---eeE-Eec--------ceE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCe
Q psy3125 1 MACTVMGLG-R----PVSWMRKRDL---HIL-TTN--------IYT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60 (163)
Q Consensus 1 l~C~~~~~~-~----~v~W~k~~~~---~~~-~~~--------~~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G 60 (163)
|.|.+.+.+ . .|.|+|.... ..+ ... ... . ...+||.+..+...+.++|.|.+++.+|+|
T Consensus 20 L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG 99 (239)
T 3tv3_H 20 LTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTA 99 (239)
T ss_dssp EEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred EEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEECCCChhhCE
Confidence 689998765 4 7999996432 122 111 011 1 124799887644456899999999999999
Q ss_pred eEEEEeeCCC--------------CeeEEEEEEEEcC-CCc--e-------EeeCCCeEEEecCCC---C-ceeEEEEeC
Q psy3125 61 IYECQVNTEP--------------KMNMAIMLNVDDR-GRG--A-------RLSAGPLLNFAFPDL---L-TTNIYTYTG 112 (163)
Q Consensus 61 ~Y~C~~~~~~--------------~~~~~~~l~V~~~-~~~--~-------~v~~~~~~~~~~~~~---~-~~~~~~~~~ 112 (163)
.|.|.+.+.. .....+.|.|... +.. + .+..|..+.+.|... + ...+.|+++
T Consensus 100 ~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~ 179 (239)
T 3tv3_H 100 TYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG 179 (239)
T ss_dssp EEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred EEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEEC
Confidence 9999995321 1223345666522 111 1 123466778888532 2 234678776
Q ss_pred CCeEEE------ecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 113 DARFSV------IHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 113 ~~~~~~------~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+..... ..... .....|.|.+...+| |.|+|.| +..+.......|.+
T Consensus 180 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 180 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 642111 11111 113469999999999 9999999 66556555555554
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=110.45 Aligned_cols=155 Identities=11% Similarity=0.177 Sum_probs=97.3
Q ss_pred CceEEecCC---CcEEEEEecCCe-e---EEec---ceE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH-I---LTTN---IYT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~-~---~~~~---~~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+. + +... ... ....+|+.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 99 (444)
T 1igt_B 20 LSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARH 99 (444)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEe
Confidence 689999873 889999864322 1 1110 000 01246888876444568899999999999999999996
Q ss_pred CCC-C---eeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEe--c---CCC-
Q psy3125 68 TEP-K---MNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVI--H---PQN- 123 (163)
Q Consensus 68 ~~~-~---~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~--~---~~~- 123 (163)
+.. . ....+.|.|... ++.+ .+..|..+.+.|... +.+ .+.|++++...... . ...
T Consensus 100 ~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~ 179 (444)
T 1igt_B 100 GGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 179 (444)
T ss_dssp CSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTE
T ss_pred cCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCc
Confidence 532 1 223456777632 1111 124677888999642 333 78888776541110 0 001
Q ss_pred -CceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 124 -SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 124 -~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
.....|.|.+++.+| |.|+|.| |..+......
T Consensus 180 ~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~ 213 (444)
T 1igt_B 180 YTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK 213 (444)
T ss_dssp EEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEE
T ss_pred EEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEE
Confidence 113469999999999 9999999 7766643333
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=109.08 Aligned_cols=150 Identities=10% Similarity=0.110 Sum_probs=93.9
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Ee--cc-eE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TT--NI-YT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~--~~-~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|.+.+ ..+ .. ++ .. ....+||.+..+...++++|.|.+++.+|+|.|+|++.
T Consensus 21 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 100 (475)
T 1iga_A 21 VSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD 100 (475)
T ss_pred EEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEe
Confidence 689998763 78999996422 111 11 00 00 11257888876433467899999999999999999995
Q ss_pred CCC-------CeeEEEEEEEEcC---CCceE------eeCCCeEEEecCCC---Cc--eeEEEEeCCCeEEEec------
Q psy3125 68 TEP-------KMNMAIMLNVDDR---GRGAR------LSAGPLLNFAFPDL---LT--TNIYTYTGDARFSVIH------ 120 (163)
Q Consensus 68 ~~~-------~~~~~~~l~V~~~---~~~~~------v~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~------ 120 (163)
+.. .....+.|.|... .+.+. +..|..+.+.|... +. ..+.|++++.......
T Consensus 101 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~ 180 (475)
T 1iga_A 101 PYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQD 180 (475)
T ss_pred ccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceec
Confidence 532 1234557777642 11111 13577888999642 22 3788877654211110
Q ss_pred CCCC---ceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 121 PQNS---DEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 121 ~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
...+ ....|.|.++..+|+|.|+|.| +..+
T Consensus 181 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 214 (475)
T 1iga_A 181 ASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN 214 (475)
T ss_pred CCCCcEEEEEEEEechhHcCCCceEEEEEEECCC
Confidence 0111 1235899999999999999999 6544
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=105.61 Aligned_cols=148 Identities=14% Similarity=0.239 Sum_probs=81.0
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Ee----cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TT----NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~----~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+. .+ .. +...+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 99 (257)
T 3bn9_D 20 LSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARP 99 (257)
T ss_dssp EEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred EEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 689999864 889999965321 11 11 111111 247998886544568899999999999999999996
Q ss_pred CCCC--------------eeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEe
Q psy3125 68 TEPK--------------MNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVI 119 (163)
Q Consensus 68 ~~~~--------------~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 119 (163)
+... ....+.|.|... ++.+ .+..|..+.+.|... +.+ .+.|++++......
T Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~ 179 (257)
T 3bn9_D 100 YLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 179 (257)
T ss_dssp CCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCE
T ss_pred cCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcE
Confidence 5321 123457787752 1111 123455677788532 333 78888776531100
Q ss_pred --c---CCCC---ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 120 --H---PQNS---DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 120 --~---~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
. ...+ ....|.|.++..+| |.|+|.| +..
T Consensus 180 ~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~ 217 (257)
T 3bn9_D 180 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 217 (257)
T ss_dssp ECCCEECTTSCEEEEEECCCC--------CEEEEEEEGG
T ss_pred ecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecC
Confidence 0 1111 23458999988888 9999999 543
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=109.82 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=98.9
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-----
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM----- 72 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~----- 72 (163)
|.|.+. +.| +.+.|+|.+..... ..++|..+.. .+.+|.|.+++.+|+|.|+|.+.+ .+..
T Consensus 121 l~C~~~~~~p~~~i~W~~~~~~~~~-------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~ 189 (382)
T 1cs6_A 121 FTCSPPPHYPALSYRWLLNEFPNFI-------PADGRRFVSQ----TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVF 189 (382)
T ss_dssp ECCCCCSEESCCEEEEEESSTTCBC-------CCCSSEEECT----TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred EEeCCCCCCCCcEEEEEECCCcccc-------ccCceEEEec----CceEEEEEeeCcccCeeEEEEEEEccccccceeE
Confidence 578754 456 89999984322111 1234443332 245699999999999999999943 2111
Q ss_pred eEEEEEEEEc-------------CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcC
Q psy3125 73 NMAIMLNVDD-------------RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 73 ~~~~~l~V~~-------------~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
+..+.|.|.. .+....+..|..+.+.|.. .+.+.+.|++.+..+. .........|.|.+++.+
T Consensus 190 s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~--~~~~~~~~~L~i~~~~~~ 267 (382)
T 1cs6_A 190 SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT--SKWLSSEPLLHIQNVDFE 267 (382)
T ss_dssp CCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS--CCCSBSSSEEEECSCCGG
T ss_pred ccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccc--cEEecCCcEEEEccCChh
Confidence 2233444432 1234456678889999963 3456788988776532 112234557999999999
Q ss_pred CCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 138 DAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 138 D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.|+|.| |..+..+..+.|.|..
T Consensus 268 d~G~Y~C~a~n~~g~~~~~~~l~V~~ 293 (382)
T 1cs6_A 268 DEGTYECEAENIKGRDTYQGRIIIHA 293 (382)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 999999999 8888888888888763
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=104.97 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=78.4
Q ss_pred CeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEEEEcCCC-------ceEeeCCCeEEEecCCC--Ccee-EEEEeCC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLNVDDRGR-------GARLSAGPLLNFAFPDL--LTTN-IYTYTGD 113 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~V~~~~~-------~~~v~~~~~~~~~~~~~--~~~~-~~~~~~~ 113 (163)
...+|.|.+++.+|+|.|+|.+. ..+..+..+.|.|..++. ...+..|..+.+.|... .... +.|+..+
T Consensus 49 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~ 128 (289)
T 3ejj_X 49 PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREG 128 (289)
T ss_dssp SCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGG
T ss_pred CccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecC
Confidence 45789999999999999999984 444566777788876543 34566788899999743 2223 8898654
Q ss_pred CeEEEecCC--CCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEEe
Q psy3125 114 ARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNVD 161 (163)
Q Consensus 114 ~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V~ 161 (163)
......... ......|.|.+++.+|+|.|+|.| +..+..+..+.|.|.
T Consensus 129 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~ 180 (289)
T 3ejj_X 129 GRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180 (289)
T ss_dssp GEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence 433211000 011234999999999999999999 334566677788776
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-16 Score=108.49 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=80.5
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.+ +.|.|+|.+.+. .+....... ...+|+.+.. ..++.+|.|.+++.+|+|.|.|.+.+.. ..
T Consensus 43 L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 120 (233)
T 3bqu_C 43 IRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENMLSEDVADYYCLQSDNLPYTF 120 (233)
T ss_dssp EEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC-----CCCCSEEEEEECSSSSCCB
T ss_pred EEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCCCHHHCEEEEEEEecCCceee
Confidence 689999988 889999864321 111111110 1134555442 2246689999999999999999995432 12
Q ss_pred eEEEEEEEEcC--CCceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe------cCC-CC----ceEE
Q psy3125 73 NMAIMLNVDDR--GRGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI------HPQ-NS----DEWN 128 (163)
Q Consensus 73 ~~~~~l~V~~~--~~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~------~~~-~~----~~~~ 128 (163)
...+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+... ... .. ....
T Consensus 121 ~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 200 (233)
T 3bqu_C 121 GGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSST 200 (233)
T ss_dssp CCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEE
T ss_pred cCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEE
Confidence 22334666543 2222221 367888999642 22 368999887643211 111 11 2346
Q ss_pred EEecccCcCCCeeEEEEc-CCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
|.|.++..+|+|.|+|.| |..
T Consensus 201 L~i~~~~~~d~g~Y~C~a~n~~ 222 (233)
T 3bqu_C 201 LTLTKDEYERHNSYTCEATHKT 222 (233)
T ss_dssp EEEEHHHHHTCCCEEEEEEEC-
T ss_pred EEECHHHhCCCCCEEEEEEeCC
Confidence 999999999999999999 554
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=110.21 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=99.0
Q ss_pred CceEEecCC----CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCC-eeEEEEeeCC--CCee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA-GIYECQVNTE--PKMN 73 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~~~~~--~~~~ 73 (163)
|.|.+.+.+ +.|.|+|.+ ..+.. ... ..++|+.+.. +.+|.|.+++.+|+ |.|+|.+.+. ....
T Consensus 123 l~C~~~~~~~~~~~~v~W~~~~-~~~~~-~~~--~~~~~~~~~~-----~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~ 193 (388)
T 2v5m_A 123 IKCLIPSFVADFVEVVSWHTDE-EENYF-PGA--EYDGKYLVLP-----SGELHIREVGPEDGYKSYQCRTKHRLTGETR 193 (388)
T ss_dssp ECCBCCTTTTTTEEEEEEEETT-CCEEC-SSS--CBTTTEEECT-----TSCEEESSCCGGGGGCCEEEEEEETTTCCEE
T ss_pred EEEECcCCCCCCcceEEEEeCC-Ccccc-ccc--CCCCcEEEcc-----CCcEEEecCCccccCeeEEEEeccCCCCcee
Confidence 579988764 679999832 22221 110 1245666553 34699999999999 9999999542 1111
Q ss_pred ---EEEEEEEEcC------------CCceEeeCCCeEEEecCCC--CceeEEEEeCCCeE---EEec---CCCCceEEEE
Q psy3125 74 ---MAIMLNVDDR------------GRGARLSAGPLLNFAFPDL--LTTNIYTYTGDARF---SVIH---PQNSDEWNMK 130 (163)
Q Consensus 74 ---~~~~l~V~~~------------~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~---~~~~~~~~L~ 130 (163)
....|.|..+ .....+..|..+.+.|... +.+.+.|++++... .... ........|.
T Consensus 194 ~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~ 273 (388)
T 2v5m_A 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 273 (388)
T ss_dssp ECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEE
T ss_pred eccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEE
Confidence 1124555543 1223566788899999743 45678898763211 0000 0001123699
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 274 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 306 (388)
T 2v5m_A 274 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 306 (388)
T ss_dssp ESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred ECcCCHHHCeEEEEEEecCCCceeEEEEEEEeC
Confidence 9999999999999999 8889888888888864
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=102.70 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=92.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~ 77 (163)
|.|.+. .| +.+.|++.++...+. ..+ .. ... +. ..+|+|.|+|.+.+.. ..+..+.
T Consensus 115 l~C~~~-~p~~~v~w~~~~~~~~~~---------~~~--~~----~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~ 173 (289)
T 3mjg_X 115 IPCRVT-DPQLVVTLHEKKGDVALP---------VPY--DH----QRG-FS----GIFEDRSYICKTTIGDREVDSDAYY 173 (289)
T ss_dssp ECCCBS-CTTSCEEEEESSCCSCCC---------CCE--ET----TTE-EE----ECCCSSEEEEEEEETTEEEECCCEE
T ss_pred EEeEcC-CCCceEEEEeCCCCCccc---------eee--cC----CcC-ee----eeccCcEEEEEEEeCCceeeeeeEE
Confidence 579998 55 999999854322211 011 00 111 11 3679999999995322 2233445
Q ss_pred EEEEc--CC------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeE-------EEecC--CCCceEEEEecccCcCC
Q psy3125 78 LNVDD--RG------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARF-------SVIHP--QNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 78 l~V~~--~~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~L~i~~v~~~D 138 (163)
|.|.. ++ ....+..|..+.+.|.. .+.+.+.|++++... ..... .......|.|.+++.+|
T Consensus 174 l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 253 (289)
T 3mjg_X 174 VYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELED 253 (289)
T ss_dssp EEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSC
T ss_pred EEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhh
Confidence 66654 21 22346678889999963 456788998654321 11111 12345789999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
+|.|+|.| |..|..+.++.|+|.++
T Consensus 254 ~G~Y~C~a~N~~G~~~~~~~l~v~~~ 279 (289)
T 3mjg_X 254 SGTYTCNVTESVNDHQDEKAINITVV 279 (289)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CcEEEEEeecCCCCceeEEEEEEEEE
Confidence 99999999 99999999999999763
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=111.21 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=100.2
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCC-CeeEEEEeeCC-CC---ee
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD-AGIYECQVNTE-PK---MN 73 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~~~~~-~~---~~ 73 (163)
|.|.+ .+.| +.+.|+|.+ ..++ ..+.++.... +.+|.|.+++.+| .|.|+|.+.+. +. ..
T Consensus 136 l~C~~~~~~p~~~v~W~~~~-~~~~-------~~~~~~~~~~-----~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~ 202 (404)
T 3p3y_A 136 LQCNPPPGLPSPVIFWMSSS-MEPI-------TQDKRVSQGH-----NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202 (404)
T ss_dssp ECCCCCCCSSCCEEEEECTT-SCBC-------CCCSSEEECT-----TSCEEESSCCSGGGSSCBEEEEECTTTCCEEEC
T ss_pred EEeCCCCCCCCCeEEEeCCC-cccc-------CCCCcEEEcC-----CCcEEEEeeeeccCCcceEEEEEeccccceecc
Confidence 57998 6778 999999732 1111 2344555443 3469999999999 59999999542 22 12
Q ss_pred EEEEEEEEcC-------C---------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEeccc
Q psy3125 74 MAIMLNVDDR-------G---------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYA 134 (163)
Q Consensus 74 ~~~~l~V~~~-------~---------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v 134 (163)
..+.|.|... + ....+..|..+.+.|.. .+.+.+.|++++..+.... ........|.|.++
T Consensus 203 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~ 282 (404)
T 3p3y_A 203 NPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNV 282 (404)
T ss_dssp CCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSC
T ss_pred CceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccC
Confidence 3345566532 1 11346678889999963 3456889998876432110 00011346999999
Q ss_pred CcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 135 QKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+.+|+|.|+|.| |..+..+..+.|.|..
T Consensus 283 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (404)
T 3p3y_A 283 SEEDSGEYFCLASNKMGSIRHTISVRVKA 311 (404)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred CHhHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence 999999999999 8889888899998864
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=101.24 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=90.4
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEe-cceE-ecC---CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTT-NIYT-YTG---DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-- 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~-~~~~-~~~---~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-- 68 (163)
|.| ..+.+ +.|.|+|..... ++.. +... ... ++||.+... ..++++|.|.+++.+|+|.|.|.+..
T Consensus 22 L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~ 99 (245)
T 4ei6_B 22 LNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKIQPTALEDSAVYFCASSFWG 99 (245)
T ss_dssp EEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEECSCCGGGCEEEEEEEECSS
T ss_pred EEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEECCCCHhHCEEEEEEEccCC
Confidence 679 55667 999999843221 1111 1111 112 278988863 34688999999999999999999963
Q ss_pred ---CCCeeEEEEEEEEcC-----CCceEee--------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe----cCC--
Q psy3125 69 ---EPKMNMAIMLNVDDR-----GRGARLS--------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI----HPQ-- 122 (163)
Q Consensus 69 ---~~~~~~~~~l~V~~~-----~~~~~v~--------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~----~~~-- 122 (163)
.......+.|.|... ++.+.+. .|..+.+.|... +. ..+.|+.++..+... ...
T Consensus 100 ~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~ 179 (245)
T 4ei6_B 100 AYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLK 179 (245)
T ss_dssp TTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEE
T ss_pred CcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCccccccccc
Confidence 123345556777741 2222222 256788888532 22 378898876543210 000
Q ss_pred -----CCc----eEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 123 -----NSD----EWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 123 -----~~~----~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
... ...|.|.....+| +|.|+|.| +.
T Consensus 180 ~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~ 216 (245)
T 4ei6_B 180 EQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp SSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred ccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEEC
Confidence 111 2348999998888 99999999 44
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=101.67 Aligned_cols=130 Identities=8% Similarity=0.064 Sum_probs=92.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CC-CCee---E
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TE-PKMN---M 74 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~-~~~~---~ 74 (163)
|.|.+. | +.|.| ++..+.. ......|.|..+..+|.|.|+|.+. +. +... .
T Consensus 118 l~C~~~--p~~~i~W---~g~~~~~------------------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~ 174 (265)
T 2oz4_A 118 VKCEAH--PRAKVTL---NGVPAQP------------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174 (265)
T ss_dssp EEEECC--TTSEEEE---SSCSSSC------------------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEE
T ss_pred EEEEcc--CCCEEEE---CCEEccC------------------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccc
Confidence 578888 6 99999 3433210 1124458899999999999999994 33 3433 5
Q ss_pred EEEEEEEcCC--------CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 75 AIMLNVDDRG--------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 75 ~~~l~V~~~~--------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+.|.|..++ ....+..|..+.+.|.. .+.+.+.|++++.. ..... .+..++.+|+|.|+|
T Consensus 175 ~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~--~~~~g-------~~~~v~~~d~G~Y~C 245 (265)
T 2oz4_A 175 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF--PLPIG-------ESVTVTRDLEGTYLC 245 (265)
T ss_dssp EEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE--ECCTT-------SCEECCGGGCEEEEE
T ss_pred cEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcc--cCCCC-------cEEEeehhhCeEEEE
Confidence 6677777542 23467788899999974 35567899998882 22211 122488899999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+..+.|.|+.
T Consensus 246 ~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 246 RARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEECCCCcEEEEEEEEEec
Confidence 99 9999999999999975
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=111.29 Aligned_cols=150 Identities=11% Similarity=0.168 Sum_probs=91.1
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceE----ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYT----YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM 72 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~ 72 (163)
|.|.+.+.+ + .|.|+| ++..+..+... ...++.|.+ ..+|.|.+++.+|+|.|+|.+.+ .+..
T Consensus 134 l~C~~~g~~p~~~~v~W~k--~g~~l~~~~~~~~~~~~~~~~~~~-------~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 204 (523)
T 2rcj_C 134 LVCLISDFYPGAVTVAWKA--DGSPVKAGVETTKPSKQSNNKYAA-------SSYLSLTPEQWKSHRSYSCQVTHEGSTV 204 (523)
T ss_pred EEEEeccccCCceEEEEec--CCCCCCCceEeccccccCCCCEEE-------EEEEEEechhcCCCceEEEEEEecCccc
Confidence 679999887 3 899998 33222211110 001222221 23699999999999999999954 3333
Q ss_pred eEEEEEEEE----cC------CCceEeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEec-----CCC---CceEEEE
Q psy3125 73 NMAIMLNVD----DR------GRGARLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVIH-----PQN---SDEWNMK 130 (163)
Q Consensus 73 ~~~~~l~V~----~~------~~~~~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~-----~~~---~~~~~L~ 130 (163)
...+.+.+. .+ .+...+..|..+.+.|... +.+ .+.|++++....... ... .....|.
T Consensus 205 ~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~ 284 (523)
T 2rcj_C 205 EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVT 284 (523)
T ss_pred ccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEE
Confidence 333332211 11 1112345678899999742 334 688988876432111 011 1134799
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|.+++.+| |.|+|.| |..+..+..+.|.|
T Consensus 285 i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v 314 (523)
T 2rcj_C 285 VPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 314 (523)
T ss_pred echhhcCC-ceEEEEEEeCCCCcceEEecCC
Confidence 99999999 9999999 88887766666644
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=107.73 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=92.3
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~ 79 (163)
|.|.+.+. |.|++.. ..++.+.. .....+|.|.+++.+|+|.|+|.+.+ .+..+..+.|.
T Consensus 24 L~C~~~~~---v~W~~~~--------------~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~ 84 (292)
T 4dkd_C 24 LRCVGNGS---VEWDGPP--------------SPHWTLYS--DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84 (292)
T ss_dssp EEEECSSC---CCBCCCC--------------CSSCEECC--BTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCE
T ss_pred EEEcCCCc---eEEccCC--------------CCceEEec--cCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEE
Confidence 46777764 8888521 12222222 23467899999999999999999944 34456777788
Q ss_pred EEcCCC-------ceEeeCCCeEEEecCCC-Cc--eeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 80 VDDRGR-------GARLSAGPLLNFAFPDL-LT--TNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 80 V~~~~~-------~~~v~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
|..++. ...+..|..+.+.|... +. ..+.|++.+........ .......|.|.+++.+|+|.|+|.|
T Consensus 85 V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 164 (292)
T 4dkd_C 85 VKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSAL 164 (292)
T ss_dssp ECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEEC
T ss_pred EcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEE
Confidence 776543 23566788899999643 22 56889876432211100 0011223999999999999999999
Q ss_pred CCCCCc-cEEEEEEEec
Q psy3125 147 NTEPKM-NMAIMLNVDG 162 (163)
Q Consensus 147 ~~~~~~-~~~~~L~V~~ 162 (163)
+..+.. +..+.|.|..
T Consensus 165 n~~~~~~s~~~~l~V~~ 181 (292)
T 4dkd_C 165 MGGRKVMSISIRLKVQK 181 (292)
T ss_dssp STTSCEECCCEEEEEEC
T ss_pred eCCCceeEEEEEEEEeC
Confidence 665543 4477887764
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=107.78 Aligned_cols=154 Identities=13% Similarity=0.175 Sum_probs=97.8
Q ss_pred CceEE-ecCC-CcEEEEEecC-CeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe---eEEEEeeC-CCCee
Q psy3125 1 MACTV-MGLG-RPVSWMRKRD-LHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG---IYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G---~Y~C~~~~-~~~~~ 73 (163)
|.|.+ .+.| +.|.|+|.+. ..+.. .....+.|+.+.. +.+|.|.+++.+|+| .|+|.+.+ .+...
T Consensus 120 l~C~~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~ 191 (395)
T 1bih_A 120 LDCVLPNAYPKPLITWKKRLSGADPNA---DVTDFDRRITAGP-----DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 191 (395)
T ss_dssp ECCCCCEEESCCEEEEEEEETTSCGGG---CCCCCCTTEEECT-----TSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred EEecCCCCCCCCeEEEEecCCCcCccc---ccccccccEEEcC-----CCcEEEEEEeeccCCCceEEEEEEEecccceE
Confidence 57996 7788 9999998531 11110 0001145665543 336999999999999 99999954 33322
Q ss_pred EEEE---EEEEcC--------------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec------CCCCceEE
Q psy3125 74 MAIM---LNVDDR--------------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH------PQNSDEWN 128 (163)
Q Consensus 74 ~~~~---l~V~~~--------------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 128 (163)
.... +.+... +....+..|..+.+.|.. .+.+.+.|++++..+.... ........
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (395)
T 1bih_A 192 VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271 (395)
T ss_dssp EEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSE
T ss_pred EEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCce
Confidence 2211 111111 234567778889999963 4456789998875432111 11112236
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCccE-EEEEEEec
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMNM-AIMLNVDG 162 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~~-~~~L~V~~ 162 (163)
|.|.+++.+|+|.|+|.| |..+.... .+.|.|..
T Consensus 272 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~ 307 (395)
T 1bih_A 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307 (395)
T ss_dssp EEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE
T ss_pred EEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc
Confidence 999999999999999999 77777554 88888863
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=99.88 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=90.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+ .|.|+|.+.. + +.. .. ...+|.|.+++.+|+|.|+|.+.+ +. +..+.|.|
T Consensus 32 l~C~~~~---~i~W~~~~~~-~------------~~~-~~----~~~~L~i~~~~~~d~G~Y~C~~~n-g~-~~~~~l~V 88 (290)
T 2o26_X 32 LTCIDPD---FVRWTFKTYF-N------------EMV-EN----KKNEWIQEKAEATRTGTYTCSNSN-GL-TSSIYVFV 88 (290)
T ss_dssp EEEECTT---EEEEEEECSS-S------------CEE-EE----CSSEEEETTCCGGGCEEEEEEESS-SC-EEEEEEEE
T ss_pred EEECCCC---cEEEecCCcc-e------------eee-cC----CCceEEEeccCHHhCeEEEEEeeC-Cc-cEEEEEEE
Confidence 5687777 8999984322 1 111 11 126799999999999999999966 33 77778888
Q ss_pred EcCC------CceEeeCCCeEEEecCCC-Cc-eeEEEEeCCC-------eEEEecCCCCceEEEEecccCcCCCe-eEEE
Q psy3125 81 DDRG------RGARLSAGPLLNFAFPDL-LT-TNIYTYTGDA-------RFSVIHPQNSDEWNMKIDYAQKRDAG-IYEC 144 (163)
Q Consensus 81 ~~~~------~~~~v~~~~~~~~~~~~~-~~-~~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C 144 (163)
..++ ....+..|..+.+.|... +. ..+.|+..++ ++.... ...|.|.+++.+|+| .|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~-----~~~L~i~~v~~~d~G~~Y~C 163 (290)
T 2o26_X 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNP-----KAGITIKNVKRAYHRLCVRC 163 (290)
T ss_dssp ECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEET-----TTEEEEESCCGGGTTCEEEE
T ss_pred eCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCC-----CCCEEEecccHHHCCCEEEE
Confidence 7643 334566788899999743 44 6788865433 222221 125999999999999 9999
Q ss_pred Ec-CCCCC-ccEEEEEEEe
Q psy3125 145 QV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 145 ~a-~~~~~-~~~~~~L~V~ 161 (163)
.| |..+. .+..+.|.|.
T Consensus 164 ~a~n~~~~~~s~~~~l~V~ 182 (290)
T 2o26_X 164 AAQRDGTWLHSDKFTLKVR 182 (290)
T ss_dssp EEEETTEEEECCCEEEEEE
T ss_pred EEEECCceEEeEEEEEEEE
Confidence 99 65433 2345777775
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-15 Score=102.26 Aligned_cols=158 Identities=11% Similarity=0.193 Sum_probs=92.6
Q ss_pred CceEEecC--C-CcEEEEEecCCe---eE-Ee---cce-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLH---IL-TT---NIY-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~---~~-~~---~~~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + ..|.|+|+.... .+ .. +.. .. ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 19 L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 98 (248)
T 3u2s_H 19 LSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVRE 98 (248)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence 68999863 3 889999864322 11 11 111 11 1247998876544568999999999999999999995
Q ss_pred CC-----------------------CCeeEEEEEEEEcC-CCce---------EeeCCCeEEEecCCC---C-ceeEEEE
Q psy3125 68 TE-----------------------PKMNMAIMLNVDDR-GRGA---------RLSAGPLLNFAFPDL---L-TTNIYTY 110 (163)
Q Consensus 68 ~~-----------------------~~~~~~~~l~V~~~-~~~~---------~v~~~~~~~~~~~~~---~-~~~~~~~ 110 (163)
+. ......+.|.|... +..+ .+..|..+.+.|... + ...+.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~ 178 (248)
T 3u2s_H 99 AGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 178 (248)
T ss_dssp EEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred CCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEe
Confidence 42 11223456666622 1111 122356677888532 2 3457787
Q ss_pred eCCCeE--EE----ecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 111 TGDARF--SV----IHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 111 ~~~~~~--~~----~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.++... .. ..... ...+.|.|.+...+| |.|+|.| +..+.......|.
T Consensus 179 ~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~ 235 (248)
T 3u2s_H 179 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 235 (248)
T ss_dssp GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred ECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence 765421 10 11111 113468899998889 9999999 6655544444443
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=101.34 Aligned_cols=158 Identities=11% Similarity=0.238 Sum_probs=94.1
Q ss_pred CceEEecCC---CcEEEEEecCCe---eE-Eecc---e-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---IL-TTNI---Y-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~-~~~~---~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.. ..|.|+|..... .+ .... . .. ...+|+.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 43 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 122 (256)
T 3sob_H 43 LSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARG 122 (256)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEe
Confidence 689998643 789999864321 11 1111 1 11 1247998876544578999999999999999999996
Q ss_pred CCC------------CeeEEEEEEEEcCC---Cce-------EeeCCCeEEEecCCC---C-ceeEEEEeCCCeE----E
Q psy3125 68 TEP------------KMNMAIMLNVDDRG---RGA-------RLSAGPLLNFAFPDL---L-TTNIYTYTGDARF----S 117 (163)
Q Consensus 68 ~~~------------~~~~~~~l~V~~~~---~~~-------~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~----~ 117 (163)
+.. .....+.|.|.... +.+ .+..|..+.+.|... + ...+.| ++... .
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~ 200 (256)
T 3sob_H 123 SGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVH 200 (256)
T ss_dssp SSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEE
T ss_pred cCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeE
Confidence 432 12344567775321 111 123567788888532 2 345667 32211 1
Q ss_pred E----ecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 118 V----IHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 118 ~----~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
. ..... ...+.|.|.+...+| |.|+|.| +..+.......|.|.
T Consensus 201 ~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 201 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp ECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred eCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 0 11111 123469999999999 9999999 666555555555543
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=111.79 Aligned_cols=157 Identities=12% Similarity=0.235 Sum_probs=97.0
Q ss_pred CceEEecCC---CcEEEEEecCC-ee--E-Eecc---e---EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL-HI--L-TTNI---Y---TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~-~~--~-~~~~---~---~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+.+ .+ + .... . .....+|+.+..+...+.++|.|.+++.+|+|.|+|++.
T Consensus 19 L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 98 (434)
T 1igy_B 19 MSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVRE 98 (434)
T ss_dssp ECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCS
T ss_pred EEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEE
Confidence 689999863 88999986422 11 1 1100 0 011246888765322356789999999999999999995
Q ss_pred CC-CCeeEEEEEEEEcC---CCce-------EeeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEe-----cCCC--Cc
Q psy3125 68 TE-PKMNMAIMLNVDDR---GRGA-------RLSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVI-----HPQN--SD 125 (163)
Q Consensus 68 ~~-~~~~~~~~l~V~~~---~~~~-------~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~-----~~~~--~~ 125 (163)
+. ......+.|.|... ++.. .+..|..+.+.|... +.+ .+.|++++...... .... ..
T Consensus 99 ~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 1igy_B 99 GEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 178 (434)
T ss_dssp SSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEE
T ss_pred ccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEE
Confidence 42 23344556777531 1111 224678889999642 333 78888776531110 0011 11
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
...|.|.+++.+| |.|+|.| |..+.......+
T Consensus 179 ~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~ 211 (434)
T 1igy_B 179 SSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKI 211 (434)
T ss_dssp EEEEEEETTTTTS-SCCEEEEECTTTTCCEEEEC
T ss_pred EEEEEEcchhcCC-CcEEEEEEeCCCCccceeec
Confidence 3469999999999 9999999 777765444433
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=102.71 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=90.0
Q ss_pred CceEEecCCCcEEEEEecCCe----eEEecc-eEecC----CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILTTNI-YTYTG----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-- 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~~~~-~~~~~----~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-- 69 (163)
|.|.+.+..+.|.|+|.+... ++.... ..... ++||.+... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus 47 L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~ 125 (270)
T 3qib_D 47 MRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLEIQSSEAGDSALYLCASSLNWS 125 (270)
T ss_dssp EEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEEESSCCGGGCEEEEEEEESCTT
T ss_pred EEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEEECCCCHhHCeEEEEEEecCCC
Confidence 679987633999999854321 111111 11111 128888752 356889999999999999999999642
Q ss_pred ---CCeeEEEEEEEEcC-----CCceEee--------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe--cC------
Q psy3125 70 ---PKMNMAIMLNVDDR-----GRGARLS--------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI--HP------ 121 (163)
Q Consensus 70 ---~~~~~~~~l~V~~~-----~~~~~v~--------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~--~~------ 121 (163)
......+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+... ..
T Consensus 126 ~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~ 205 (270)
T 3qib_D 126 QDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKE 205 (270)
T ss_dssp CCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEES
T ss_pred ccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccc
Confidence 12334556777762 1222221 267788888632 22 367898876544210 00
Q ss_pred ----CCC---ceEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 122 ----QNS---DEWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 122 ----~~~---~~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
... ....|.|.+...+| +|.|+|.| +.
T Consensus 206 ~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~ 241 (270)
T 3qib_D 206 QPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 241 (270)
T ss_dssp CTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEEC
T ss_pred cccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEec
Confidence 011 12458888888888 99999999 44
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=97.62 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=89.7
Q ss_pred CceEEecCC---CcEEEEEecCC---ee-EEec---ceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HI-LTTN---IYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~-~~~~---~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.+.+ .. +... .... ...+|+.+..+...++++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 99 (215)
T 1c5d_H 20 LTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRED 99 (215)
T ss_dssp EEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECC
T ss_pred EEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEec
Confidence 689999864 88999986422 11 2111 0111 12478988764444678999999999999999999955
Q ss_pred CC----CeeEEEEEEEEcC---CCceE-------eeCCCeEEEecCCC---Cce-eEEEEeCCCeEEEecCC---CCceE
Q psy3125 69 EP----KMNMAIMLNVDDR---GRGAR-------LSAGPLLNFAFPDL---LTT-NIYTYTGDARFSVIHPQ---NSDEW 127 (163)
Q Consensus 69 ~~----~~~~~~~l~V~~~---~~~~~-------v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~---~~~~~ 127 (163)
.. .....+.|.|... ++.+. +..|..+.+.|... +.+ .+.|++++......... .....
T Consensus 100 ~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~ 179 (215)
T 1c5d_H 100 GWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLY 179 (215)
T ss_dssp SSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEEETTEE
T ss_pred CCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCcccCCCCE
Confidence 32 2334467888742 11121 23567788888642 334 78888776532111000 01121
Q ss_pred EE--EecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 128 NM--KIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 128 ~L--~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+ .|.....+| |.|+|.| +..+...
T Consensus 180 ~~~s~L~~~~~~~-g~ytC~v~n~~~~~~ 207 (215)
T 1c5d_H 180 TLTSSVTSSTWPS-QTVTCNVAHPASSTK 207 (215)
T ss_dssp EEEEEEEESSTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEEEecccCCC-CeEEEEEEeCCCCcc
Confidence 11 233444456 9999999 6655543
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=100.87 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=91.2
Q ss_pred CceEEecCCCcEEEEEecCCe----eEEe-cceEecC----CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC---
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILTT-NIYTYTG----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--- 68 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~~-~~~~~~~----~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--- 68 (163)
|.|.+....+.|.|+|...+. +... +...... ++|+.+... ..++++|.|.+++.+|+|.|.|.+.+
T Consensus 46 L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~ 124 (268)
T 3pl6_D 46 LRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTLKIQRTERGDSAVYLCATSALGD 124 (268)
T ss_dssp EEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEECSCCGGGCEEEEEEEESSSS
T ss_pred EEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEEEECCCCcccCEEEEEEEecCCC
Confidence 579887433999999953221 1111 1111111 278888863 35689999999999999999999964
Q ss_pred CCCeeEEEEEEEEcC-----CCceEe--------eCCCeEEEecCCC---C-ceeEEEEeCCCeEEEe--cC--------
Q psy3125 69 EPKMNMAIMLNVDDR-----GRGARL--------SAGPLLNFAFPDL---L-TTNIYTYTGDARFSVI--HP-------- 121 (163)
Q Consensus 69 ~~~~~~~~~l~V~~~-----~~~~~v--------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~--~~-------- 121 (163)
.......+.|.|... ++...+ ..|..+.+.|... + ...+.|++++..+... ..
T Consensus 125 ~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~ 204 (268)
T 3pl6_D 125 TQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQP 204 (268)
T ss_dssp SCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESST
T ss_pred ceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccc
Confidence 223344556777752 112222 1357788889632 2 2378899877644210 00
Q ss_pred --CCC---ceEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 122 --QNS---DEWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 122 --~~~---~~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
... ....|.|.....+| +|.|+|.| +.
T Consensus 205 ~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~ 238 (268)
T 3pl6_D 205 ALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 238 (268)
T ss_dssp TCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred cCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcC
Confidence 011 12457888888887 99999999 44
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=100.83 Aligned_cols=148 Identities=11% Similarity=0.178 Sum_probs=92.2
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEE-ecc---eE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILT-TNI---YT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~-~~~---~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.+.. ..+. ... .. . ...+|+.+..+ ..++++|.|.+++.+|+|.|.|++.+.
T Consensus 44 L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 122 (279)
T 2wbj_D 44 IECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVTSAHPEDSSFYICSARDL 122 (279)
T ss_dssp EEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEEEEEccCCccCCEEEEEEEccc
Confidence 689998888 99999996422 1111 111 01 1 12478988763 246889999999999999999999541
Q ss_pred -----C--CeeEEEEEEEEcC-----CCceEee--------CCCeEEEecCCC---C-ceeEEEEeCCCeEE----Ee--
Q psy3125 70 -----P--KMNMAIMLNVDDR-----GRGARLS--------AGPLLNFAFPDL---L-TTNIYTYTGDARFS----VI-- 119 (163)
Q Consensus 70 -----~--~~~~~~~l~V~~~-----~~~~~v~--------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~----~~-- 119 (163)
. .....+.|.|... ++.+.+. .|..+.+.|... + .+.+.|++++..+. ..
T Consensus 123 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~ 202 (279)
T 2wbj_D 123 TSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQ 202 (279)
T ss_dssp TCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSS
T ss_pred ccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccc
Confidence 1 1233456888752 2223322 356788888642 2 25788998765331 10
Q ss_pred -----cCCCCc----eEEEEecccCcCC-CeeEEEEc-CCC
Q psy3125 120 -----HPQNSD----EWNMKIDYAQKRD-AGIYECQV-NTE 149 (163)
Q Consensus 120 -----~~~~~~----~~~L~i~~v~~~D-~G~Y~C~a-~~~ 149 (163)
...... ...|.|.+....| .|.|+|.| +..
T Consensus 203 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~ 243 (279)
T 2wbj_D 203 PLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYG 243 (279)
T ss_dssp CEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECC
T ss_pred cccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCC
Confidence 000111 2358898888765 77899999 553
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-14 Score=97.79 Aligned_cols=139 Identities=10% Similarity=0.095 Sum_probs=92.7
Q ss_pred CceEEec-CC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEccc---CcCCCee--EEEEee-CCC
Q psy3125 1 MACTVMG-LG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYA---QKRDAGI--YECQVN-TEP 70 (163)
Q Consensus 1 l~C~~~~-~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v---~~~D~G~--Y~C~~~-~~~ 70 (163)
|.|.+.+ .| + .|.|+| ++..+. .+ +.. . ...|.|..+ +.+|+|. |+|.+. ..+
T Consensus 23 l~C~~~g~~p~p~~~v~W~k--~~~~l~---------~~--~~~--~--~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~ 85 (265)
T 2oz4_A 23 VVCSLDGLFPVSEAQVHLAL--GDQRLN---------PT--VTY--G--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 85 (265)
T ss_dssp EEEEEESCSCGGGCEEEEEE--TTEECC---------CE--EEE--C--SSEEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred EEEEccCCCCCcceEEEEEe--CCEECC---------ce--Eee--C--CCeEEEEeecccccccCCcceEEEEEecCCC
Confidence 6899999 67 5 999998 332221 11 111 1 113444444 7788885 999994 445
Q ss_pred CeeEEEEEEEEcCCC------ceEeeCCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 71 KMNMAIMLNVDDRGR------GARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 71 ~~~~~~~l~V~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.....+.|.|...+. ...+..|..+.+.|...+...+.| ++..+ ........|.|..+..+|+|.|+|
T Consensus 86 ~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~p~~~i~W--~g~~~----~~~~~~~~l~i~~~~~~~~g~Y~C 159 (265)
T 2oz4_A 86 SQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPA----QPLGPRAQLLLKATPEDNGRSFSC 159 (265)
T ss_dssp EEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECCTTSEEEE--SSCSS----SCCSSEECCEEECCGGGTTEEEEE
T ss_pred CcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEccCCCEEEE--CCEEc----cCCCCcEEEEEccccccCCceEEE
Confidence 666778888876432 234567888999998766678888 44433 122345669999999999999999
Q ss_pred Ec-CCC-CCcc---EEEEEEEec
Q psy3125 145 QV-NTE-PKMN---MAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~-~~~~---~~~~L~V~~ 162 (163)
.| +.. |... ..+.|.|..
T Consensus 160 ~a~n~~~g~~~~~s~~~~l~V~~ 182 (265)
T 2oz4_A 160 SATLEVAGQLIHKNQTRELRVLY 182 (265)
T ss_dssp EEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEcCCCCCcccccccEEEEEEe
Confidence 99 554 5554 677777753
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-14 Score=96.11 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=91.9
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEecce--Ee---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTNIY--TY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~~~--~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + ..|.|+|.+.+ . ++..... .+ ...+||.+..+...++++|.|.+++.+|+|.|.|++.+
T Consensus 21 L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 100 (230)
T 1ypz_F 21 ISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGE 100 (230)
T ss_dssp EEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECC
T ss_pred EEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEEC
Confidence 68999885 5 89999986432 1 2222111 01 14689998865444789999999999999999999965
Q ss_pred C---C--CeeEEEEEEEEc--------CCCceEee--------CCCeEEEecCCC---C-ceeEEEEe-CCCeEEE--e-
Q psy3125 69 E---P--KMNMAIMLNVDD--------RGRGARLS--------AGPLLNFAFPDL---L-TTNIYTYT-GDARFSV--I- 119 (163)
Q Consensus 69 ~---~--~~~~~~~l~V~~--------~~~~~~v~--------~~~~~~~~~~~~---~-~~~~~~~~-~~~~~~~--~- 119 (163)
. . .....+.|.|.. .++.+.+. .|..+.+.|... + ...+.|++ ++..+.. .
T Consensus 101 ~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~ 180 (230)
T 1ypz_F 101 GSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEG 180 (230)
T ss_dssp TTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEEC
T ss_pred CCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccc
Confidence 2 1 123456788872 11223332 245678888532 3 25788988 4432210 0
Q ss_pred ---cCCC--CceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 120 ---HPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 120 ---~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
.... .....|.|.++.. | |.|+|.| +...
T Consensus 181 ~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~ 215 (230)
T 1ypz_F 181 DTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENN 215 (230)
T ss_dssp CCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSC
T ss_pred eeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCC
Confidence 0000 1134699988876 5 9999999 6544
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=97.71 Aligned_cols=147 Identities=12% Similarity=0.126 Sum_probs=90.1
Q ss_pred CceEEecCCCcEEEEEecCCe----eEEec-ceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee--CC-
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILTTN-IYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN--TE- 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~~~-~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~--~~- 69 (163)
|.|.+.+..+.|.|+|..... +.... .... ...+|+.+... ..++++|.|.+++.+|+|.|.|.+. ..
T Consensus 22 L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~ 100 (240)
T 3q5y_A 22 LTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALELEDSAMYFCASSLRWGD 100 (240)
T ss_dssp EEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECSCCGGGCEEEEEEEESSTTB
T ss_pred EEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECcCChhHCEEEEEEEccCCCc
Confidence 689988733999999853221 11111 1111 12368888763 3568899999999999999999995 21
Q ss_pred -CCeeEEEEEEEEc-----CCCceEe--------eCCCeEEEecCCC---C-ceeEEEEeCCCeEEEe---------cCC
Q psy3125 70 -PKMNMAIMLNVDD-----RGRGARL--------SAGPLLNFAFPDL---L-TTNIYTYTGDARFSVI---------HPQ 122 (163)
Q Consensus 70 -~~~~~~~~l~V~~-----~~~~~~v--------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~---------~~~ 122 (163)
......+.|.|.. .++...+ ..|..+.+.|... + ...+.|++++..+... ...
T Consensus 101 ~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~ 180 (240)
T 3q5y_A 101 EQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESN 180 (240)
T ss_dssp CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEET
T ss_pred ceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCC
Confidence 2233455677764 1222222 1256788888632 2 2367798876543210 000
Q ss_pred C--CceEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 123 N--SDEWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 123 ~--~~~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
. .....|.|.++..+| +|.|+|.| +.
T Consensus 181 g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~ 210 (240)
T 3q5y_A 181 YSYSLSSRLRVSATFWHNPRNHFRCQVQFH 210 (240)
T ss_dssp TEEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred CCEEEEEEEEECHHHhccCCCEEEEEEEcC
Confidence 0 112349999999999 77999999 54
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-15 Score=89.72 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=56.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++.. +..+.|+.+..+ ....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 33 l~C~~~G~P~p~v~W~k--~g~~-------l~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 101 (107)
T 3knb_B 33 LKCVVLGEPPPVVVWEK--GGQQ-------LAASERLSFPAD--GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101 (107)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCCCSSEECCEE--TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCEEEEEE--Cccc-------ccceeeEEEeec--CceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 3332 334567776652 45778999999999999999999 556677778888
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|.++
T Consensus 102 ~V~~p 106 (107)
T 3knb_B 102 TVLEP 106 (107)
T ss_dssp EEEC-
T ss_pred EEEcC
Confidence 88765
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-14 Score=105.20 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=85.3
Q ss_pred CceEEecC-C---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe--eEEEEeeC-CCCee
Q psy3125 1 MACTVMGL-G---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG--IYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~~~~-~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G--~Y~C~~~~-~~~~~ 73 (163)
|.|.+.+. | +.+.|+| ++..+. .++.... +.....+.+ +++.+|+| .|+|.+.+ .+...
T Consensus 208 l~C~~~g~~P~~~~~~~W~~--~~~~~~---------~~~~~~~--~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~ 273 (450)
T 1z7z_I 208 VVCSLDGLFPVSEAQVHLAL--GDQRLN---------PTVTYGN--DSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQE 273 (450)
T ss_dssp EEEEEESCTTGGGCEEEEEE--TTEECC---------CEEEEET--TEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEE
T ss_pred EEEEeeCCCCCCceEEEEeC--CCEeCC---------ceEEecC--CceeEEEEE-EeEhhhCCcEEEEEEEccCCccEE
Confidence 57999988 5 7899998 322221 1222221 111112233 88999999 99999944 45566
Q ss_pred EEEEEEEEcCCC------ceEeeCCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 74 MAIMLNVDDRGR------GARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 74 ~~~~l~V~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
..+.|.|...+. ...+..|..+.+.|...+.+.+.| ++..+.. ......|.|.+++.+|+|.|+|.|
T Consensus 274 ~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~ 347 (450)
T 1z7z_I 274 TLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQP----LGPRAQLLLKATPEDNGRSFSCSAT 347 (450)
T ss_dssp EEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC----------------------CCCCCEEEECCGGGTTCEEEEEEE
T ss_pred EEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEE--CCEEcCC----CCceEEEEEecCcccCCceEEEEEE
Confidence 677888886422 224667889999998776677788 4443311 122346999999999999999999
Q ss_pred CCCC----CccEEEEEEEec
Q psy3125 147 NTEP----KMNMAIMLNVDG 162 (163)
Q Consensus 147 ~~~~----~~~~~~~L~V~~ 162 (163)
|..+ ..+..+.|.|..
T Consensus 348 n~~~g~~~~~~~~~~l~V~~ 367 (450)
T 1z7z_I 348 LEVAGQLIHKNQTRELRVLY 367 (450)
T ss_dssp EEETTEEEEEEEEEECEEEE
T ss_pred cCCCCcccccceeEEEEEec
Confidence 6554 334677777753
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=93.33 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=86.8
Q ss_pred CceEEecCCCcEEEEEecCC---eeEEecceEecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEeeCCC------
Q psy3125 1 MACTVMGLGRPVSWMRKRDL---HILTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVNTEP------ 70 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~---~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~------ 70 (163)
|.|.+.+....|.|+|.+.+ ..+..........+||.+..+ ...+.++|.|.+++.+|+|.|.|.+.+..
T Consensus 21 L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~ 100 (207)
T 1ypz_E 21 LRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYE 100 (207)
T ss_dssp EEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCC
T ss_pred EEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccc
Confidence 68999876567999996532 222212111223579988864 33568899999999999999999995431
Q ss_pred ------CeeEEEEEEEEcC-----CCceEeeCCCeEEEecCCC---C-ceeEEEEeCCCeEEEecC----CCCceEEEEe
Q psy3125 71 ------KMNMAIMLNVDDR-----GRGARLSAGPLLNFAFPDL---L-TTNIYTYTGDARFSVIHP----QNSDEWNMKI 131 (163)
Q Consensus 71 ------~~~~~~~l~V~~~-----~~~~~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~----~~~~~~~L~i 131 (163)
.....+.|.|... ++.+.+..+ .+.+.|... + .+.+.|+.+ ..+..... ..... +.+
T Consensus 101 ~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~--y~~ 176 (207)
T 1ypz_E 101 LGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGK--YSA 176 (207)
T ss_dssp CCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSS--EEE
T ss_pred cccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCc--EEE
Confidence 1223467888752 222222222 256667431 2 257888887 54331110 11122 333
Q ss_pred ccc-CcCCCeeEEEEc-CCCC
Q psy3125 132 DYA-QKRDAGIYECQV-NTEP 150 (163)
Q Consensus 132 ~~v-~~~D~G~Y~C~a-~~~~ 150 (163)
... ..+|.|.|+|.| +..+
T Consensus 177 ~~~~~~~~~~~ytC~v~~~~~ 197 (207)
T 1ypz_E 177 VKLGQYGDSNSVTCSVQHNSE 197 (207)
T ss_dssp EECEEESSTTTCEEEEEETTE
T ss_pred EEeecccCCCcEEEEEEECCc
Confidence 333 347889999999 5543
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=105.98 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=95.2
Q ss_pred CceEEecCC-C---cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC----
Q psy3125 1 MACTVMGLG-R---PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK---- 71 (163)
Q Consensus 1 l~C~~~~~~-~---~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~---- 71 (163)
|.|.+.+.+ + .|.|+| ++..+..+. + .. ...+.+|.|.+++.+|+|.|+|.+.+ .+.
T Consensus 106 L~C~~~g~~~~~~~~v~W~k--~g~~l~~~~-------~---~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 171 (450)
T 1z7z_I 106 LRCQVEGGAPRANLTVVLLR--GEKELKREP-------A---VG--EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171 (450)
T ss_dssp EEEEEECCBCGGGEEEEEEE--TTEEEEEEE-------C---CT--TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred EEEEecCCCCCcCcEEEEee--CCEEeeccc-------c---cc--cccceEEEEEeeccccCceEEEEEEcccCCCCce
Confidence 689999988 6 899998 443332111 0 00 12356899999999999999999943 221
Q ss_pred ----eeEEEEEEEEcC----CCc---eEeeCCCeEEEecCCC---C--ceeEEEEeCCCeEE--EecCCCCceEEEEecc
Q psy3125 72 ----MNMAIMLNVDDR----GRG---ARLSAGPLLNFAFPDL---L--TTNIYTYTGDARFS--VIHPQNSDEWNMKIDY 133 (163)
Q Consensus 72 ----~~~~~~l~V~~~----~~~---~~v~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~ 133 (163)
.+....|.|... +.. ..+..|..+.+.|... + .....|++++..+. +..........+.+ +
T Consensus 172 ~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~ 250 (450)
T 1z7z_I 172 LFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV-S 250 (450)
T ss_dssp EEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEE-E
T ss_pred EEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEE-E
Confidence 113345555532 211 4567789999999632 3 57888888765322 11111111222233 7
Q ss_pred cCcCCCe--eEEEEc-CCCCCccEEEEEEEec
Q psy3125 134 AQKRDAG--IYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 134 v~~~D~G--~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
++.+|+| .|+|.| |..+..+..+.|.|..
T Consensus 251 v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~ 282 (450)
T 1z7z_I 251 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (450)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEhhhCCcEEEEEEEccCCccEEEEEEEEEec
Confidence 8999999 999999 8878888888888864
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=96.67 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=90.8
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Ee-cc--e-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TT-NI--Y-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~-~~--~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|.... ..+ .. .. . .. ...+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 99 (226)
T 3mlr_H 20 ISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRL 99 (226)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEeEc
Confidence 689998743 78999996432 122 11 10 1 11 1247898876544568999999999999999999995
Q ss_pred CCC----------CeeEEEEEEEEcCC---CceE-------eeCCCeEEEecCCC---C-ceeEEEEeCCCe---EE---
Q psy3125 68 TEP----------KMNMAIMLNVDDRG---RGAR-------LSAGPLLNFAFPDL---L-TTNIYTYTGDAR---FS--- 117 (163)
Q Consensus 68 ~~~----------~~~~~~~l~V~~~~---~~~~-------v~~~~~~~~~~~~~---~-~~~~~~~~~~~~---~~--- 117 (163)
+.. .....+.|.|.... +.+. +..|..+.+.|... + ...+.| ..... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-~~~~~~~~~~~~~ 178 (226)
T 3mlr_H 100 YLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-NSGALTSGVHTFP 178 (226)
T ss_dssp EEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE-GGGTCCTTEEECC
T ss_pred cCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE-CCccccCCeEeCC
Confidence 421 11233456665321 1111 12466778888532 2 345677 22221 11
Q ss_pred -EecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 118 -VIHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 118 -~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.....+ ...+.|.|.+...+| |.|+|.| +..+.......
T Consensus 179 ~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 179 AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 221 (226)
T ss_dssp CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred cEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence 011111 123469999999999 9999999 65554444433
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=94.82 Aligned_cols=145 Identities=8% Similarity=0.097 Sum_probs=87.5
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEecce----EecCCC-eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTTNIY----TYTGDA-RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~~~~----~~~~~~-r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+.+ +.|.|+|...+. ++..... .....+ ||.+..... .. |.|.+++.+|+|.|.|.+.+..
T Consensus 21 L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~-L~I~~v~~~DsG~Y~C~~~~~~ 97 (253)
T 3to4_D 21 LRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD--TE-LRLQVANMSQGRTLYCTSSADH 97 (253)
T ss_dssp EEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSS--SC-CEEEEESCSSCEEEEEEEECSC
T ss_pred EEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCC--Ce-EEEccCChhhCeEEEEEEecCC
Confidence 689988888 999999853321 1111110 000123 888876432 22 9999999999999999995321
Q ss_pred -------CeeEEEEEEEEcC-----CCceEee--------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEe----cCC
Q psy3125 71 -------KMNMAIMLNVDDR-----GRGARLS--------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVI----HPQ 122 (163)
Q Consensus 71 -------~~~~~~~l~V~~~-----~~~~~v~--------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~----~~~ 122 (163)
.....+.|.|... ++.+.+. .|..+.+.|... +. ..+.|++++..+... ...
T Consensus 98 ~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~ 177 (253)
T 3to4_D 98 WTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQP 177 (253)
T ss_dssp CSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSC
T ss_pred CCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceeccccc
Confidence 2234456777642 2223332 236788888632 22 367898876543210 000
Q ss_pred -------CCc----eEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 123 -------NSD----EWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 123 -------~~~----~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
... ...|.|.....+| .|.|+|.| +.
T Consensus 178 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~ 216 (253)
T 3to4_D 178 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216 (253)
T ss_dssp EESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeC
Confidence 111 2468898888888 77999999 44
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=82.29 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=63.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +.|.|+|.+ ..++..+......++|+.+... ...+.+|.|.+++.+|+|.|+|.+.+.+..+..+.|.
T Consensus 26 L~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~ 103 (108)
T 3m45_A 26 LTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLT 103 (108)
T ss_dssp EEEEESSCSSCCEEEECTT-CCEEEETTEECSCCTTEEEEEE-SSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEE
T ss_pred EEeEEcCCCccEEEEEcCC-CceEEEcCCcccccCcEEEeec-CCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEEEEE
Confidence 689999999 999999733 2244455555566779987653 2358899999999999999999996566777888888
Q ss_pred EEcC
Q psy3125 80 VDDR 83 (163)
Q Consensus 80 V~~~ 83 (163)
|.++
T Consensus 104 V~~~ 107 (108)
T 3m45_A 104 VLGV 107 (108)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8765
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=88.09 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=86.0
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+ +.| + .|.|+|.+.. + ++.... .....|.|.+++.+|+|.|.|.+.+ .......+
T Consensus 27 L~C~a-~~p~P~~~i~W~~~~~~--l----------~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~ 89 (210)
T 1gsm_A 27 LTCRL-ACADRGASVQWRGLDTS--L----------GAVQSD----TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89 (210)
T ss_dssp EEEEE-CCSSTTCEEEEESSTTT--T----------CCEEEE----SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEC-CCCCCCcceEEeecccc--c----------CcEEec----CCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence 57999 887 6 9999983321 1 222222 2467799999999999999999954 34456778
Q ss_pred EEEEEcCCCceEee-----CCCeEEEecCCC---C----ceeEEEEeCCCeEE---Eec--------C---CCC----ce
Q psy3125 77 MLNVDDRGRGARLS-----AGPLLNFAFPDL---L----TTNIYTYTGDARFS---VIH--------P---QNS----DE 126 (163)
Q Consensus 77 ~l~V~~~~~~~~v~-----~~~~~~~~~~~~---~----~~~~~~~~~~~~~~---~~~--------~---~~~----~~ 126 (163)
.|.|..+|..+.+. .|... +.|... + ...+.|++++..+. +.. . ... ..
T Consensus 90 ~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt 168 (210)
T 1gsm_A 90 QLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT 168 (210)
T ss_dssp EEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred EEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE
Confidence 89999887655554 45556 888532 2 34699998876431 100 0 011 13
Q ss_pred EEEEecccCcCCCeeEEEEc
Q psy3125 127 WNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a 146 (163)
++|.+...+.+|.+.|+|+|
T Consensus 169 s~~~~~~~~~D~~~~~tC~a 188 (210)
T 1gsm_A 169 ERWRLPPLGTPVPPALYCQA 188 (210)
T ss_dssp EEEECCCCCSSCCSEEEEEE
T ss_pred EEEeecCCcccCCceEEEEE
Confidence 44667788888889999999
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=105.52 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred CceEEecCCCcEEEEEec-CCeeEEecceEecCCCe-EEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCe--eEEE
Q psy3125 1 MACTVMGLGRPVSWMRKR-DLHILTTNIYTYTGDAR-FSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM--NMAI 76 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~-~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~--~~~~ 76 (163)
|.|.+.+..+.+.|+|.. +..+ ..+++ +... ....|.|.+++.+|+|.|+|.+...... +...
T Consensus 148 L~C~~~~p~~~v~w~~~~~~~~~--------~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~ 214 (772)
T 3v2a_R 148 IPCLGSISNLNVSLCARYPEKRF--------VPDGNRISWD-----SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMY 214 (772)
T ss_dssp ECCCCSCSSCCEEEEEETTTEEE--------CCCSSSCEEE-----TTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEE
T ss_pred EEccCCCCCcEEEEEecCCCccc--------cCCCceeecC-----CCCCeEecCCChhhCeEEEEEEEECCceEEEEEE
Confidence 579988733999999831 1111 12221 2222 1345999999999999999999543221 1112
Q ss_pred EEEEEc---------CCCceEeeCCCeEEEecCC----CCceeEEEEeCCCeEEEe------c------CCCCceEEEEe
Q psy3125 77 MLNVDD---------RGRGARLSAGPLLNFAFPD----LLTTNIYTYTGDARFSVI------H------PQNSDEWNMKI 131 (163)
Q Consensus 77 ~l~V~~---------~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~------~~~~~~~~L~i 131 (163)
.+.+.. ++....+..|..+.+.|.. .....+.|++++...... . ........|.|
T Consensus 215 ~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 294 (772)
T 3v2a_R 215 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294 (772)
T ss_dssp EEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEE
T ss_pred EEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEE
Confidence 233322 1223467788999999964 233568898876643210 0 11223567999
Q ss_pred cccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 132 DYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.+++.+|+|.|+|.| +..+..+..+.|.|..
T Consensus 295 ~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 326 (772)
T 3v2a_R 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326 (772)
T ss_dssp SSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC
Confidence 999999999999999 8778888888888864
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=95.52 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=85.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcc-cCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDY-AQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+ ....++.+.. .....+|.|.+ ++.+|+|.|+|.+ +..+.....+.
T Consensus 124 l~C~~~g~p~p~i~W~~--~~~~~-------~~~~~~~~~~--~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 192 (305)
T 2nzi_A 124 IKIPFSGKPDPVITWQK--GQDLI-------DNNGHYQVIV--TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192 (305)
T ss_dssp EEEEEEEESCCEEEEEE--SSSBC-------CSSSSCEEEE--CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCEEEEEE--CCEEC-------CCCCcEEEEE--cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEE
Confidence 579999999 9999998 32222 2345666654 23467899999 9999999999999 55566677788
Q ss_pred EEEEcCCCceE---ee--CCCeEEEecCCCC---ceeEEEE----eC--CCeEEEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 78 LNVDDRGRGAR---LS--AGPLLNFAFPDLL---TTNIYTY----TG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 78 l~V~~~~~~~~---v~--~~~~~~~~~~~~~---~~~~~~~----~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
|.|...+..+. +. .+..+.+.|.... ...+..+ .. ...+..... .....|.|.++...|.|.|+
T Consensus 193 l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~--~~~~~~~i~~l~~~~~y~~~ 270 (305)
T 2nzi_A 193 LDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFR 270 (305)
T ss_dssp EEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEE--ESSSEEEECSCCSSCEEEEE
T ss_pred EEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcc--ccCceEEecCCCCCCeEEEE
Confidence 88886643221 11 2344555443210 0011111 00 111111110 11335999999999999999
Q ss_pred EEc-CCCCC
Q psy3125 144 CQV-NTEPK 151 (163)
Q Consensus 144 C~a-~~~~~ 151 (163)
|.| |..|.
T Consensus 271 ~~A~N~~G~ 279 (305)
T 2nzi_A 271 VIAENKFGL 279 (305)
T ss_dssp EEEEETTEE
T ss_pred EEEEeCCcc
Confidence 999 77653
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=102.26 Aligned_cols=141 Identities=12% Similarity=0.158 Sum_probs=83.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce---EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-Cee
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY---TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KMN 73 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~~ 73 (163)
|.|.+.+. | +.|.|+| ++..+..+.. ....+++|.+. ..|.|.++..+|+|.|+|++.+.. ...
T Consensus 29 L~C~~~g~~P~~~~v~W~k--~g~~l~~~~~~~~~~~~~g~~~~~-------s~l~i~~~~~~d~g~Y~C~a~n~~~~~~ 99 (323)
T 2wqr_A 29 LLCLVSGYTPGTIQITWLE--DGQVMDVDLSTASTTQEGELASTQ-------SELTLSQKHWLSDRTYTCQVTYQGHTFE 99 (323)
T ss_dssp EEEEEEEECCCCEEEEEEE--TTEECCGGGEEEEEEEETTEEEEE-------EEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred EEEEEeCeECCCeEEEEEE--CCEEcccceecCCcCccCCcEEEE-------EEEEEcHHHcCCCCcEEEEEEeCCCCcc
Confidence 67999985 3 6899998 4433332211 11113444333 258899988899999999995432 222
Q ss_pred EEEEE---------EEE-cCCCceEeeCCCeEEEecCCC---Cce---eEEEEeCCCeEEEe------cCCCC---ceEE
Q psy3125 74 MAIML---------NVD-DRGRGARLSAGPLLNFAFPDL---LTT---NIYTYTGDARFSVI------HPQNS---DEWN 128 (163)
Q Consensus 74 ~~~~l---------~V~-~~~~~~~v~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~------~~~~~---~~~~ 128 (163)
..+.+ .+. .++....+..|..+.+.|... +.. .+.|+++++..... ..... ....
T Consensus 100 ~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~ 179 (323)
T 2wqr_A 100 DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTST 179 (323)
T ss_dssp EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEE
T ss_pred eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEE
Confidence 22111 111 112222355678899999632 222 78998865322100 01111 2347
Q ss_pred EEecccCcCCCeeEEEEc-CCCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
|.|.+++.+|+|.|+|.| |...
T Consensus 180 L~I~~~~~~D~G~Y~C~a~n~~~ 202 (323)
T 2wqr_A 180 LPVGTRDWIEGETYQCRVTHPHL 202 (323)
T ss_dssp EECCHHHHHTTCCEEEEEECTTS
T ss_pred EEECHHHccCCCCEEEEEECCCC
Confidence 999999999999999999 6543
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=93.15 Aligned_cols=147 Identities=10% Similarity=0.162 Sum_probs=87.4
Q ss_pred CceEEecCCCcEEEEEecCCe---eE-Ee--cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH---IL-TT--NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-- 70 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~---~~-~~--~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-- 70 (163)
|.|.+....+.|.|+|.+... .+ .. +.... ...+||.+... ..++++|.|.+++.+|+|.|.|.+.+..
T Consensus 19 L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 97 (238)
T 1bec_A 19 LSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELATPSQTSVYFCASGGGRGS 97 (238)
T ss_dssp EEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSCCGGGCEEEEEEEESCTTC
T ss_pred EEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecCCcccCEEEEEEEecCCCC
Confidence 689985433999999965321 11 11 11111 12578888753 2467899999999999999999996541
Q ss_pred ----CeeEEEEEEEEcC-----CCceEe--------eCCCeEEEecCCC---C-ceeEEEEeCCCeEEEe--c--C----
Q psy3125 71 ----KMNMAIMLNVDDR-----GRGARL--------SAGPLLNFAFPDL---L-TTNIYTYTGDARFSVI--H--P---- 121 (163)
Q Consensus 71 ----~~~~~~~l~V~~~-----~~~~~v--------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~--~--~---- 121 (163)
.....+.|.|... ++.+.+ ..|..+.+.|... + ...+.|++++..+... . .
T Consensus 98 ~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 177 (238)
T 1bec_A 98 YAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 177 (238)
T ss_dssp GGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEE
T ss_pred ccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeC
Confidence 1223456777752 222222 2466777888642 2 2478898876543210 0 0
Q ss_pred -CC--CceEEEEecccCcCC-CeeEEEEc-CC
Q psy3125 122 -QN--SDEWNMKIDYAQKRD-AGIYECQV-NT 148 (163)
Q Consensus 122 -~~--~~~~~L~i~~v~~~D-~G~Y~C~a-~~ 148 (163)
.. .....|.|......| .|.|+|.| +.
T Consensus 178 ~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~ 209 (238)
T 1bec_A 178 SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFH 209 (238)
T ss_dssp ETTEEEEEEEECCCHHHHTCTTCEEEEEEEEC
T ss_pred CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcC
Confidence 00 012346666666555 67899999 54
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-14 Score=101.17 Aligned_cols=142 Identities=9% Similarity=0.162 Sum_probs=84.3
Q ss_pred CceEEecC-C-C---cEEEEEecCCeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCee
Q psy3125 1 MACTVMGL-G-R---PVSWMRKRDLHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~-~-~---~v~W~k~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~ 73 (163)
|.|.+.+. | + .|.|+|.++ .++...... ...+++|. ...+|.|.+++.+|+|.|+|.+.+... .
T Consensus 133 L~C~~~g~~P~p~~~~i~W~k~~g-~~~~~~~~~~~~~~~g~~~-------~~~~L~I~~~~~~D~G~Y~C~a~n~~~-~ 203 (323)
T 2wqr_A 133 ITCLVVDLAPSKGTVQLTWSRASG-KPVNHSTRKEEKQRNGTLT-------VTSTLPVGTRDWIEGETYQCRVTHPHL-P 203 (323)
T ss_dssp EEEEEEEECCCSSCCEEEEEETTC-CCCCCCCCEEEECTTSCEE-------EEEEEECCHHHHHTTCCEEEEEECTTS-S
T ss_pred EEEEEeccCCCCCceEEEEEECCC-cccccccCCCccCCCCCEE-------EEEEEEECHHHccCCCCEEEEEECCCC-C
Confidence 67999985 4 5 899998442 222211111 11223332 144799999999999999999955321 1
Q ss_pred EEEEEEEEc-----CCCceEe-------eCCCeEEEecCCC---C-ceeEEEEeCCCeEE-----Ee---cCCC---Cce
Q psy3125 74 MAIMLNVDD-----RGRGARL-------SAGPLLNFAFPDL---L-TTNIYTYTGDARFS-----VI---HPQN---SDE 126 (163)
Q Consensus 74 ~~~~l~V~~-----~~~~~~v-------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~-----~~---~~~~---~~~ 126 (163)
..+.+.|.. .++.+.+ ..|..+.+.|... + ...+.|++++..+. .. .... ...
T Consensus 204 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~ 283 (323)
T 2wqr_A 204 RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF 283 (323)
T ss_dssp SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEE
T ss_pred CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEE
Confidence 122333321 1111111 1277889999642 2 23688998765332 10 0011 123
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
..|.|.++..+|+|.|+|.| |....
T Consensus 284 s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 284 SRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEEEChHHccCCCEEEEEEEeCCCC
Confidence 56999999999999999999 76655
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=79.97 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=50.6
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+.++.|.|+| ++. .+..++++.+.. ..+..+|.|.+++.+|+|.|+|.+.+ .+..+.|.|
T Consensus 16 l~C~vs~p~p~v~W~k--~g~-------~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~a~l~V 81 (84)
T 2lu7_A 16 LVVHLSGPGGPVRWYK--DGE-------RLASQGRVQLEQ--AGARQVLRVQGARSGDAGEYLCDAPQ---DSRIFLVSV 81 (84)
T ss_dssp EECCCSCCSTTCEEEE--TTE-------ECCCCSSEEEEE--CSSCEEEEESSCSSTTCEEEEEECTT---TCEEEEEEE
T ss_pred EEEEECCCCcEEEEEE--CCE-------EccccccEEEee--cCCeEEEEecCCCCcccEEEEEEECC---EEEEEEEEE
Confidence 6799977339999998 333 233566777775 34567899999999999999999844 245566777
Q ss_pred EcC
Q psy3125 81 DDR 83 (163)
Q Consensus 81 ~~~ 83 (163)
.+|
T Consensus 82 ~eP 84 (84)
T 2lu7_A 82 EEP 84 (84)
T ss_dssp CCC
T ss_pred ECC
Confidence 653
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=106.80 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=89.0
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEe----cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTY----TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM- 72 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~- 72 (163)
|.|.+ .+.| +.|.|+|.+....+. ..... ...+|+.+.. +.+|.|.+++.+|+|.|+|++.+ .+..
T Consensus 386 L~C~~~~~~~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~r~~~~~-----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~ 459 (581)
T 3o3u_N 386 LKCKGAPKKPPQRLEWKLNTGRTEAW-KVLSPQGGGPWDSVARVLP-----NGSLFLPAVGIQDEGIFRCQAMNRNGKET 459 (581)
T ss_dssp ECCTTCCSSSSCEEEEEEEETTSSSC-EECCSCCSSGGGGTSEECT-----TSCEEESSCCGGGCEEEEEEEECTTSCEE
T ss_pred EeeeecCCCCCceEEEEEcCCeeEEE-EecccCCCCCcCCcEEEcC-----CceEEEeccccccCeEEEEEEEcCCCcee
Confidence 57998 6777 999999854321111 00000 1134555443 34799999999999999999954 3333
Q ss_pred eEEEEEEEEcCCCceEee-------CC-CeEEEecCC---CCceeEEEEeCCCeE-------EEe----cC-CC---Cce
Q psy3125 73 NMAIMLNVDDRGRGARLS-------AG-PLLNFAFPD---LLTTNIYTYTGDARF-------SVI----HP-QN---SDE 126 (163)
Q Consensus 73 ~~~~~l~V~~~~~~~~v~-------~~-~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~----~~-~~---~~~ 126 (163)
...+.|.|..++..+.+. .+ ..+.+.|.. .+.+.+.|+.++..+ .+. .. .. ...
T Consensus 460 ~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~ 539 (581)
T 3o3u_N 460 KSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQ 539 (581)
T ss_dssp EEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEE
Confidence 567889998765433322 22 334457863 245788998875422 111 10 11 124
Q ss_pred EEEEecccCc-CCCeeEEEEc-CCCC
Q psy3125 127 WNMKIDYAQK-RDAGIYECQV-NTEP 150 (163)
Q Consensus 127 ~~L~i~~v~~-~D~G~Y~C~a-~~~~ 150 (163)
+.|.|.++++ ++.|.|+|.| |..+
T Consensus 540 s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 540 SELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp EEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred EEEEEEeccccCCCceEEEEEeccCC
Confidence 5699999994 5588999999 6643
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=96.00 Aligned_cols=142 Identities=11% Similarity=0.183 Sum_probs=87.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+..+ ...++.+.. .....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 120 l~C~~~g~p~~~i~W~~--~g~~l~~~-----~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 190 (389)
T 2jll_A 120 ISCDVKSNPPASIHWRR--DKLVLPAK-----NTTNLKTYS--TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190 (389)
T ss_dssp EEECEEEESCCEEEEEE--TTEESSCT-----TCTTEEEEE--CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCeEEEEE--CCccCCcc-----cCceEEEec--cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEE
Confidence 579999999 9999998 33322211 123555554 234678999999999999999999 445555666667
Q ss_pred EEEcCCCce---Ee--eCCCeEEEecCCC------Cc--eeEEEEeCCC-eEEEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 79 NVDDRGRGA---RL--SAGPLLNFAFPDL------LT--TNIYTYTGDA-RFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 79 ~V~~~~~~~---~v--~~~~~~~~~~~~~------~~--~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.|...+..+ .+ ..+..+.+.|... +. -.+.|...+. .+.... .......|.|.++...|.|.|+|
T Consensus 191 ~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~~~v 269 (389)
T 2jll_A 191 ALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQTMVVLNNLEPNTTYEIRV 269 (389)
T ss_dssp EECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEE-CSTTCSEEEECSCCTTCEEEEEE
T ss_pred EecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEee-ccCCcceEEECCccCCCEEEEEE
Confidence 665544322 11 1233455544311 11 1233444332 221111 12234569999999999999999
Q ss_pred Ec-CCCCCc
Q psy3125 145 QV-NTEPKM 152 (163)
Q Consensus 145 ~a-~~~~~~ 152 (163)
.| |..|..
T Consensus 270 ~A~N~~G~~ 278 (389)
T 2jll_A 270 AAVNGKGQG 278 (389)
T ss_dssp EEEESSCBC
T ss_pred EEEcCCccC
Confidence 99 776643
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=83.72 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=54.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.. ....|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 25 l~C~~~g~P~p~v~W~k--~g~~i~~-----~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 95 (100)
T 3knb_A 25 VACAFTGEPTPEVTWSC--GGRKIHS-----QEQGRFHIEN--TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95 (100)
T ss_dssp EEEEEEEESCCEEEEEE--TTEECCT-----TGGGTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCEEEEEE--CceEeee-----eccceeeeec--ccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 3333221 1234777765 335778999999999999999999 555666777778
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 96 ~V~~ 99 (100)
T 3knb_A 96 HIRS 99 (100)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7763
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=80.78 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=55.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+ .| +.|.|+| ++.. +..+.|+.+.. .....+|.|.+++.+|+|.|+|.+.+. ..+..+.|.
T Consensus 27 l~C~v--~p~p~v~W~k--~g~~-------l~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~ 92 (100)
T 2yuz_A 27 LKCEI--SENIPGKWTK--NGLP-------VQESDRLKVVQ--KGRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVH 92 (100)
T ss_dssp EEEEC--SSCCCEEEEE--TTEE-------CCCCSSEEEEE--CSSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEE
T ss_pred EEEEe--CCCCeEEEEE--CCEE-------CCCCCcEEEEE--eCCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEE
Confidence 67999 56 9999998 3332 23567888775 345678999999999999999999665 567788899
Q ss_pred EEcCCC
Q psy3125 80 VDDRGR 85 (163)
Q Consensus 80 V~~~~~ 85 (163)
|.++|.
T Consensus 93 V~~~P~ 98 (100)
T 2yuz_A 93 VISGPS 98 (100)
T ss_dssp EECCSC
T ss_pred EeCCCC
Confidence 987753
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-13 Score=92.18 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=89.5
Q ss_pred CceEEecCCCcEEEEEecCC---eeEEecce---Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC---
Q psy3125 1 MACTVMGLGRPVSWMRKRDL---HILTTNIY---TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--- 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~---~~~~~~~~---~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--- 69 (163)
|.|.+....+.|.|+|.+.. ..+.+... .. ...+|+.+... ..++.+|.|.+++.+|+|.|.|.+.+.
T Consensus 23 L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 101 (252)
T 1oga_E 23 LSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSAQKNPTAFYLCASSSRSSY 101 (252)
T ss_dssp ECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSCCSCCCEEEEEEEESSTTS
T ss_pred EEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECcCChhhCEEEEEEEecCCcc
Confidence 68998543399999986422 12211110 01 12478888753 245778999999999999999999653
Q ss_pred -CCeeEEEEEEEEcC-----CCceEee--------CCCeEEEecCCC---C-ceeEEEEeCCCeEEEe--cC--------
Q psy3125 70 -PKMNMAIMLNVDDR-----GRGARLS--------AGPLLNFAFPDL---L-TTNIYTYTGDARFSVI--HP-------- 121 (163)
Q Consensus 70 -~~~~~~~~l~V~~~-----~~~~~v~--------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~--~~-------- 121 (163)
......+.|.|... ++.+.+. .|..+.+.|... + ...+.|++++..+... ..
T Consensus 102 ~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~ 181 (252)
T 1oga_E 102 EQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQP 181 (252)
T ss_dssp CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCT
T ss_pred ceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccc
Confidence 12223456777642 2223332 356788889642 3 2478899876543210 00
Q ss_pred -CCCc----eEEEEecccCcC-CCeeEEEEc-CCC
Q psy3125 122 -QNSD----EWNMKIDYAQKR-DAGIYECQV-NTE 149 (163)
Q Consensus 122 -~~~~----~~~L~i~~v~~~-D~G~Y~C~a-~~~ 149 (163)
.... ...|.|.+.... |.|.|+|.| +..
T Consensus 182 ~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~ 216 (252)
T 1oga_E 182 ALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYG 216 (252)
T ss_dssp TSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred cCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCC
Confidence 0111 234888877664 678999999 543
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=93.28 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=81.9
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C--
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K-- 71 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~-- 71 (163)
|.|.+.+.+ + .|.|+| ++..+..+..... .++.|.+. ..|.|.....+|.|.|+|.+.+.. .
T Consensus 137 l~C~~~g~p~~~~~v~W~k--~g~~l~~~~~~~~~~~~~~~~~~~-------s~L~i~~~~~d~~g~Y~C~a~n~~~~~~ 207 (327)
T 2wng_A 137 FTCESHGFSPRDITLKWFK--NGNELSDFQTNVDPVGESVSYSIH-------STAKVVLTREDVHSQVICEVAHVTLQGD 207 (327)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCCEEEEEECSSCCSCEEEE-------EEEEEECCTTGGGCEEEEEEECTTSCSC
T ss_pred EEEEEeCccCCCcEEEEEE--CCEEccccccccccccCCCceEEE-------EEEEEechhcCcCceEEEEEeccccCCC
Confidence 579999887 4 899998 3333321211111 11222222 247887777777899999995422 2
Q ss_pred -eeEEEEEE--EEcCCCceE-----eeCCCeEEEecCCC---Cc-eeEEEEeCCCeEEEec------CCCC---ceEEEE
Q psy3125 72 -MNMAIMLN--VDDRGRGAR-----LSAGPLLNFAFPDL---LT-TNIYTYTGDARFSVIH------PQNS---DEWNMK 130 (163)
Q Consensus 72 -~~~~~~l~--V~~~~~~~~-----v~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~------~~~~---~~~~L~ 130 (163)
......+. |..++ .+. +..|..+.+.|... +. ..+.|++++..+.... .... ....|.
T Consensus 208 ~~~~~~~~~~~v~~~P-~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~ 286 (327)
T 2wng_A 208 PLRGTANLSETIRVPP-TLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLL 286 (327)
T ss_dssp CEEEEEEGGGTBCBCC-EEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEE
T ss_pred cccceEEeccccCCCC-EEEEecCCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEE
Confidence 22233332 22222 111 44688889999643 22 2689998887664321 1111 124599
Q ss_pred ecccCcCCCeeEEEEc-CCCC-CccEEEEEEE
Q psy3125 131 IDYAQKRDAGIYECQV-NTEP-KMNMAIMLNV 160 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V 160 (163)
|.++..+|+|.|+|.| |..+ ..+.++.+.+
T Consensus 287 i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~ 318 (327)
T 2wng_A 287 VNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV 318 (327)
T ss_dssp C-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred EccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence 9999999999999999 7665 4455555443
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=82.07 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=56.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+ ..+.|+.+.. .....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 27 l~C~~~g~p~p~i~W~k--~~~~~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 95 (114)
T 2cqv_A 27 LFGKVTGTQPITCTWMK--FRKQI-------QESEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95 (114)
T ss_dssp EEEEEESSSSCEEEEEE--SSSBC-------CCSSSEEEEE--CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred EEEEEEcCCCCEEEEEE--CCEEC-------cCCCCEEEEE--cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence 689999999 9999998 22222 2345777765 2357789999999999999999994 45566778888
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|...+
T Consensus 96 ~V~~~p 101 (114)
T 2cqv_A 96 TVVDKP 101 (114)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 888764
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=94.57 Aligned_cols=157 Identities=11% Similarity=0.171 Sum_probs=90.7
Q ss_pred CceEEecC--C-CcEEEEEecCCe---eE-Eecc---e-E--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLH---IL-TTNI---Y-T--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~---~~-~~~~---~-~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+. . ..|.|+|..... .+ .... . . ....+||.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 43 L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 122 (267)
T 3u1s_H 43 VSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDTAIYYCLTG 122 (267)
T ss_dssp EEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEEC
Confidence 57999763 3 789999964321 22 1111 0 1 11247999876544578999999999999999999995
Q ss_pred -------CCC-------------------CeeEEEEEEEEc-CCCceEe---------eCCCeEEEecCCC---C-ceeE
Q psy3125 68 -------TEP-------------------KMNMAIMLNVDD-RGRGARL---------SAGPLLNFAFPDL---L-TTNI 107 (163)
Q Consensus 68 -------~~~-------------------~~~~~~~l~V~~-~~~~~~v---------~~~~~~~~~~~~~---~-~~~~ 107 (163)
... .....+.|.|.. ....+.+ ..|..+.+.|... + ...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v 202 (267)
T 3u1s_H 123 SKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 202 (267)
T ss_dssp EEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEE
T ss_pred cCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeEEECCCeEE
Confidence 110 112234566652 2211211 2356677888532 2 3456
Q ss_pred EEEeCCCeE----EE----ecCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 108 YTYTGDARF----SV----IHPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 108 ~~~~~~~~~----~~----~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.| ++... .. ..... ...+.|.|.....+| |.|+|.| +..........+.|
T Consensus 203 ~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 203 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 77 32211 11 11111 123469999999999 9999999 55444444444433
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=83.57 Aligned_cols=84 Identities=17% Similarity=0.282 Sum_probs=64.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +.|.|++.+...+ ..++.....++|+.+... ...+.+|.|.+++.+|+|.|+|.+.+.+.....+.|.
T Consensus 58 L~C~~~~~~~~~i~W~~~~~~~i-~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~L~ 135 (145)
T 1z9m_A 58 LKCQVKDHEDSSLQWSNPAQQTL-YFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 135 (145)
T ss_dssp EEEECSCCTTCCEEEECTTCCEE-EETTEECSCCTTEEEEEE-CSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEE
T ss_pred EEEEEcCCCCcEEEEECCCCcEE-EECCceecccCCEEEecC-CCCeEEEEECCCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999 9999996444433 445555556788887653 3457899999999999999999995547777888899
Q ss_pred EEcCCCc
Q psy3125 80 VDDRGRG 86 (163)
Q Consensus 80 V~~~~~~ 86 (163)
|.+++..
T Consensus 136 V~~~P~~ 142 (145)
T 1z9m_A 136 VLGIPQK 142 (145)
T ss_dssp EECCCC-
T ss_pred EEeCCCC
Confidence 9887643
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=101.29 Aligned_cols=144 Identities=9% Similarity=0.063 Sum_probs=84.2
Q ss_pred CceEEecC-C-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGL-G-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~-~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+. | + .|.|+|.+............. .++|.+. ..|.|.+++.+| |.|+|.+.+ .+......
T Consensus 143 L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~ 213 (444)
T 1igt_B 143 LGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQ-SDLYTLS-------SSVTVTSSTWPS-QSITCNVAHPASSTKVDK 213 (444)
T ss_dssp EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEE-TTEEEEE-------EEEEECSTTTTT-SCCEEEEEETTTTEEEEE
T ss_pred EEEEEcceeCCCcEEEEecCCCCCCeEecCcccc-CCcEEEE-------EEEEEchhhcCC-CeEEEEEEeCCCCcceEE
Confidence 57999985 6 5 999987322110110000111 1334332 359999999999 999999944 33322222
Q ss_pred EEEE-------------------------EcCCCceE-eeCCCeEEEecCCC------CceeEEEEeCCCeEEEe-----
Q psy3125 77 MLNV-------------------------DDRGRGAR-LSAGPLLNFAFPDL------LTTNIYTYTGDARFSVI----- 119 (163)
Q Consensus 77 ~l~V-------------------------~~~~~~~~-v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----- 119 (163)
.+.+ ..++.... +..|..+.+.|... ....+.|++++..+...
T Consensus 214 ~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~ 293 (444)
T 1igt_B 214 KIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTH 293 (444)
T ss_dssp ECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCC
T ss_pred EeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccc
Confidence 2211 11111111 35688889999632 23478899887532110
Q ss_pred --cCCC--CceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 120 --HPQN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 120 --~~~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
...+ .....|.|.+++.+|+|.|+|.| |..+...
T Consensus 294 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 332 (444)
T 1igt_B 294 REDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP 332 (444)
T ss_dssp EEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC
T ss_pred eeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCc
Confidence 0000 12457999999999999999999 7766653
|
| >4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=83.73 Aligned_cols=146 Identities=17% Similarity=0.326 Sum_probs=93.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..|.|+|+.++.-+. .+... +. -.+||.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~ 99 (254)
T 4f9p_D 20 VSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTSDDSAVYFCARS 99 (254)
T ss_dssp EEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEECEES
T ss_pred EEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCCCCCEEEEEEec
Confidence 589999987 789999975443321 12222 21 247999998777889999999999999999999752
Q ss_pred CCCCe-eEEEEEE---------------------------EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC---
Q psy3125 68 TEPKM-NMAIMLN---------------------------VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA--- 114 (163)
Q Consensus 68 ~~~~~-~~~~~l~---------------------------V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--- 114 (163)
..... -.-+.+. +...|....+..|..+.+.|.. .....+.|+...+
T Consensus 100 ~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~~l~WyqQ~PG~~ 179 (254)
T 4f9p_D 100 DYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHES 179 (254)
T ss_dssp SSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTTCCEEEEECTTSC
T ss_pred CCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccCCcEEEEECCCCC
Confidence 21100 0001111 2222344567788899999952 2223466774421
Q ss_pred -eEEEec--------------CCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 -RFSVIH--------------PQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 -~~~~~~--------------~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
++.+.. .......+|+|.+++.+|++.|+|+-
T Consensus 180 p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q 226 (254)
T 4f9p_D 180 PRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQ 226 (254)
T ss_dssp CEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEE
T ss_pred CEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEee
Confidence 222210 11234567999999999999999976
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=79.20 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....++.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 28 l~C~~~g~p~p~i~W~k--~~~~-------~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 96 (103)
T 3qp3_A 28 FILNVQSKPTAEVKWYH--NGVE-------LQESSKIHYTN--TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96 (103)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCCCSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEE--CCEE-------CCCCCCEEEEE--CCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence 679999999 9999998 3222 23445776664 235678999999999999999999 555666777778
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|...
T Consensus 97 ~V~~~ 101 (103)
T 3qp3_A 97 DVTGG 101 (103)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77653
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=77.64 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+.++.|.|+| ++..+ ..++|+.+.. ..+..+|.|.+++.+|+|.|+|.+.+ ....+.|.|
T Consensus 25 l~C~v~~~~~~v~W~k--~g~~i-------~~~~~~~i~~--~g~~~~L~I~~v~~~D~G~Y~C~a~n---~~~sa~L~V 90 (93)
T 1waa_A 25 FEIELSEPDVHGQWKL--KGQPL-------AASPDCEIIE--DGKKHILILHNCQLGMTGEVSFQAAN---TKSAANLKV 90 (93)
T ss_dssp EEEEESSSSCCCEEEE--TTEEC-------CCBTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEETT---EEEEEEEEE
T ss_pred EEEEECCCCCeEEEEE--CCEEC-------cCCCCEEEEE--ECCEEEEEECCCChhhCEEEEEEECC---CcEEEEEEE
Confidence 6899987558899998 33322 3456777765 23567899999999999999999954 245667777
Q ss_pred Ec
Q psy3125 81 DD 82 (163)
Q Consensus 81 ~~ 82 (163)
.+
T Consensus 91 ~~ 92 (93)
T 1waa_A 91 KE 92 (93)
T ss_dssp EC
T ss_pred Ec
Confidence 64
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=92.38 Aligned_cols=141 Identities=12% Similarity=0.082 Sum_probs=79.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC---eeEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK---MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~---~~~~~ 76 (163)
|.|.+.+. |.|+|. ...+ ..++..... .....+|.|.+++.+|+|.|+|.+.+ .+. ....+
T Consensus 20 L~C~~~~~---v~W~~~--~~~~---------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~ 84 (289)
T 3mjg_X 20 LTCSGSAP---VVWERM--SQEP---------PQEMAKAQD-GTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL 84 (289)
T ss_dssp EEEEESSC---CEEEBT--TBCC---------SEEEEECTT-SCEEEEEEECSCCGGGCEEEEEECCC------CCCEEE
T ss_pred EEEeccce---EEEECC--CCCc---------ccceeccCC-CceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeE
Confidence 57888875 999983 2211 123332221 12247899999999999999999954 222 33444
Q ss_pred EEEEEcCCCc----------eEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEE
Q psy3125 77 MLNVDDRGRG----------ARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 77 ~l~V~~~~~~----------~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.|.|..+... ..+..|..+.+.|... +.+.+.|+..+....+......... +. ...|+|.|+|.
T Consensus 85 ~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~~-~~----~~~d~G~Y~C~ 159 (289)
T 3mjg_X 85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRG-FS----GIFEDRSYICK 159 (289)
T ss_dssp EEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCEETTTE-EE----ECCCSSEEEEE
T ss_pred EEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceeecCCcC-ee----eeccCcEEEEE
Confidence 4544433211 3467789999999754 3456777665421111100001111 11 36799999999
Q ss_pred c-CCCC-CccEEEEEEEe
Q psy3125 146 V-NTEP-KMNMAIMLNVD 161 (163)
Q Consensus 146 a-~~~~-~~~~~~~L~V~ 161 (163)
| +..+ ..+..+.|.|.
T Consensus 160 a~n~~~~~~s~~~~l~v~ 177 (289)
T 3mjg_X 160 TTIGDREVDSDAYYVYRL 177 (289)
T ss_dssp EEETTEEEECCCEEEEEC
T ss_pred EEeCCceeeeeeEEEEec
Confidence 9 5543 33444556654
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=94.10 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=93.1
Q ss_pred CceEEecCC-----CcEEEEEecCC---ee-EEecc---eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL---HI-LTTNI---YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~---~~-~~~~~---~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.+.+ ..|.|+|+..+ .. +.... ..+ ...+||.+..+...++++|.|.+++.+|+|.|.|++
T Consensus 20 L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~ 99 (512)
T 1zvo_C 20 LTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCAR 99 (512)
T ss_pred EEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEE
Confidence 689998653 57999986422 11 21111 111 124799988654456799999999999999999999
Q ss_pred eCCC--------------CeeEEEEEEEEcCC---CceE-e-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEE
Q psy3125 67 NTEP--------------KMNMAIMLNVDDRG---RGAR-L-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFS 117 (163)
Q Consensus 67 ~~~~--------------~~~~~~~l~V~~~~---~~~~-v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 117 (163)
.... .....+.|.|...+ +.+. . ..+..+.+.|... +. ..+.|+.++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~ 179 (512)
T 1zvo_C 100 GNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQP 179 (512)
T ss_pred ECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEEEEEcCcccCc
Confidence 5432 12244567776421 1111 1 1235677888632 22 3688887643211
Q ss_pred Ee--c---C-CC--CceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 118 VI--H---P-QN--SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 118 ~~--~---~-~~--~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
.. . . .+ .....|.|.....+ +|.|+|.| +..+.....+
T Consensus 180 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~ 226 (512)
T 1zvo_C 180 QRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI 226 (512)
T ss_pred eEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence 11 0 0 11 11345899988877 99999999 7666554443
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=80.97 Aligned_cols=83 Identities=12% Similarity=0.334 Sum_probs=61.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.| +.|.|++. +..++.........++|+.+... ..+..+|.|.+++.+|+|.|+|.+.+.+.....+.|.
T Consensus 21 L~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~l~ 98 (124)
T 3rbg_A 21 LKCVTSLRKNSSLQWLTP-SGFTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVI 98 (124)
T ss_dssp EEEECCCCTTCEEEEECT-TSCEEEETTEECSCSSCCEEEEE-ETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEE
T ss_pred EEeEEeccCCCEEEEECC-CCeEEEEeccccccCCcEEEEeC-CCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEEEE
Confidence 689999999 99999963 33333333333345678887642 3457899999999999999999995556677888888
Q ss_pred EEcCCC
Q psy3125 80 VDDRGR 85 (163)
Q Consensus 80 V~~~~~ 85 (163)
|..++.
T Consensus 99 V~~~P~ 104 (124)
T 3rbg_A 99 VLATMK 104 (124)
T ss_dssp EECC--
T ss_pred EEeCCC
Confidence 887754
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-13 Score=82.54 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=54.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccC-----CCCeEEEEEcccCcCCCeeEEEEe-eCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~ 73 (163)
|+|.+.|.| +.|.|+| ++..+ ..+.++.+.... ....++|.|.+++.+|+|.|+|.| |..+...
T Consensus 20 l~c~v~G~P~P~I~W~k--nG~~l-------~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 90 (126)
T 1he7_A 20 IPFSVDGQPAPSLRWLF--NGSVL-------NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90 (126)
T ss_dssp EEEEECCSSCCEEEEEE--TTEEC-------CCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEEeeeCCCeEEEEE--CCEEC-------CCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEE
Confidence 589999999 9999998 43333 233443322111 112578999999999999999999 5667777
Q ss_pred EEEEEEEEcCC
Q psy3125 74 MAIMLNVDDRG 84 (163)
Q Consensus 74 ~~~~l~V~~~~ 84 (163)
..+.|.|...+
T Consensus 91 ~t~~l~v~~~P 101 (126)
T 1he7_A 91 ASIMAAFMDNP 101 (126)
T ss_dssp EEEEECCCSCT
T ss_pred EEEEEEEEcCC
Confidence 77788877665
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=84.45 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=84.9
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-- 70 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-- 70 (163)
|.|.+.+.+ ..|.|+|...+ ..+........ ..+||.+..+...+.++|.|.+++.+|+|.|.|.+....
T Consensus 21 L~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~ 100 (229)
T 1hxm_A 21 LRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMG 100 (229)
T ss_dssp EEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCS
T ss_pred EEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCc
Confidence 689998654 67999986432 23322222211 257999886434568899999999999999999995431
Q ss_pred -------CeeEEEEEEEEcC-----CCceEeeCCCeEEEecCC---CC-ceeEEEEeCCCeEEEecCC--CCceEEEEec
Q psy3125 71 -------KMNMAIMLNVDDR-----GRGARLSAGPLLNFAFPD---LL-TTNIYTYTGDARFSVIHPQ--NSDEWNMKID 132 (163)
Q Consensus 71 -------~~~~~~~l~V~~~-----~~~~~v~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~ 132 (163)
.....+.|.|... ++.+.+..+ ...+.|.. .+ ...+.|..+ ..+...... ....+.+.+.
T Consensus 101 ~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~~-~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~ 178 (229)
T 1hxm_A 101 GEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMKN-GTNVACLVKEFYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAV 178 (229)
T ss_dssp SSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEEE-TTEEEEEEESCBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE
T ss_pred ccccchhhcCccEEEEEeccCCCCcCCcEEEcCC-CCeEEEEEEEEeCCCEEEEEecC-CEEecCccceEECCCCcEEEE
Confidence 1223457888752 222332221 23566742 12 246788887 543311100 0111224443
Q ss_pred cc-CcCCCeeEEEEc-CC
Q psy3125 133 YA-QKRDAGIYECQV-NT 148 (163)
Q Consensus 133 ~v-~~~D~G~Y~C~a-~~ 148 (163)
.. ..+|.|.|+|.| +.
T Consensus 179 ~~~~~~~~~~ytC~V~h~ 196 (229)
T 1hxm_A 179 KLGKYEDSNSVTCSVQHD 196 (229)
T ss_dssp EEEEETTTTTCEEEEEET
T ss_pred ECcccCCCCcEEEEEEeC
Confidence 33 337899999999 44
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=77.38 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=53.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +..+.|+.+... ....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 26 l~C~~~g~p~p~v~W~~--~g~~-------~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 94 (99)
T 3puc_A 26 FAVKATGEPRPTAIWTK--DGKA-------ITQGGKYKLSED--KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94 (99)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCSSSSEEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEE--CCEE-------CcCCCCEEEEEe--CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence 579999999 9999998 3322 234567777652 35678999999999999999999 445566677777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 95 ~V~~ 98 (99)
T 3puc_A 95 TIKA 98 (99)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=77.36 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=52.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+ ....++.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 25 l~C~~~g~p~p~v~W~k--~g~~~-------~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1g1c_A 25 FRVRVVGKPDPECEWYK--NGVKI-------ERSDRIYWYWP-EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94 (99)
T ss_dssp EEEEEEEESCCEEEEEE--TTEEC-------CCCSSEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCEEEEEE--CCEEC-------CCCCCEEEEEc-CCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEE
Confidence 679999999 9999998 33222 23345444321 235778999999999999999999 555666677777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 95 ~V~~ 98 (99)
T 1g1c_A 95 LVQA 98 (99)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=76.60 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=53.0
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+.+. | +.|.|+| +.. .+....|+.+.. ..+..+|.|.+++.+|+|.|+|.+. ..+.....+.
T Consensus 21 l~C~~~g~~p~~~v~W~~--~~~-------~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 89 (97)
T 2bk8_A 21 YVCKIENYDQSTQVTWYF--GVR-------QLENSEKYEITY--EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE 89 (97)
T ss_dssp EEEEEESCCTTCEEEEEE--TTE-------ECCSSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCCEEEEEE--CCE-------ECcCCCCEEEEE--cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEE
Confidence 68999997 7 9999998 322 223456777654 2346789999999999999999994 4556666667
Q ss_pred EEEEc
Q psy3125 78 LNVDD 82 (163)
Q Consensus 78 l~V~~ 82 (163)
|.|.+
T Consensus 90 l~V~~ 94 (97)
T 2bk8_A 90 LFVKG 94 (97)
T ss_dssp EEETT
T ss_pred EEEEe
Confidence 77654
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=78.62 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeE--EEecc-CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARF--SVIHP-QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~--~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|.|.+.|.| +.|.|+| ++..+. .+.++ .+... ......+|.|.+++.+|+|.|+|.+ |..+.....
T Consensus 21 ~~c~v~G~P~P~i~W~k--~g~~l~-------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 91 (103)
T 1wwb_X 21 IPFTVKGNPKPALQWFY--NGAILN-------ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91 (103)
T ss_dssp EEEEEECSSCCEEEEEE--TTEEEC-------CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEeCCCEEEEEE--CCEECC-------CCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence 579999999 9999998 433332 22232 11111 1112456999999999999999999 556677777
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|...+
T Consensus 92 ~~l~V~~~P 100 (103)
T 1wwb_X 92 ISAHFMGWP 100 (103)
T ss_dssp EEECCSCCC
T ss_pred EEEEECCCC
Confidence 778776553
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=78.98 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=53.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+ ...|+.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 44 l~C~~~g~P~p~i~W~k--~g~~l--------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 111 (118)
T 2e7c_A 44 LVVPFQGKPRPQVVWTK--GGAPL--------DTSRVHVRT--SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111 (118)
T ss_dssp EEEEEEEESCCEEEEEE--TTEEC--------CCSSCEEEE--CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred EEEEEccCCCCEEEEEE--CCEEC--------CCCcEEEEE--CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence 679999999 9999998 33222 134555543 234678999999999999999999 445666777888
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|.+.+
T Consensus 112 ~V~~~P 117 (118)
T 2e7c_A 112 RVVEKA 117 (118)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 887653
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9e-12 Score=93.93 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=83.4
Q ss_pred CceEEecC-CC---cEEEEEecCCeeEEecceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCe--e
Q psy3125 1 MACTVMGL-GR---PVSWMRKRDLHILTTNIYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM--N 73 (163)
Q Consensus 1 l~C~~~~~-~~---~v~W~k~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~--~ 73 (163)
|.|.+.+. |. .|.|+|.+............ ..+++|.+. ..|.|..+..+|+|.|+|++.+.... .
T Consensus 146 L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 218 (475)
T 1iga_A 146 IACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS-------SQLTLPATQCLAGKSVTCHVKHYTNPSQD 218 (475)
T ss_pred EEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEE-------EEEEechhHcCCCceEEEEEEECCCCcee
Confidence 67999987 33 89998732110000000000 123344332 25899999999999999999543222 2
Q ss_pred EEEEEEEE-------------------------cCCCceEeeCCCeEEEecCCC--Cc---eeEEEEeCCCeEEEe----
Q psy3125 74 MAIMLNVD-------------------------DRGRGARLSAGPLLNFAFPDL--LT---TNIYTYTGDARFSVI---- 119 (163)
Q Consensus 74 ~~~~l~V~-------------------------~~~~~~~v~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~---- 119 (163)
..+.|.|. .++....+..|..+.+.|... .. ..+.| ++......
T Consensus 219 ~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~ 296 (475)
T 1iga_A 219 VTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGP 296 (475)
T ss_pred eeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccC
Confidence 22222220 001111245678888999632 11 46777 33322110
Q ss_pred --cCCC---CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 120 --HPQN---SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 120 --~~~~---~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
.... .....|.|.+++.+|+|.|+|.| |..+.......|
T Consensus 297 ~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v 341 (475)
T 1iga_A 297 PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATL 341 (475)
T ss_pred ceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEe
Confidence 0001 13456999999999999999999 776665444444
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-12 Score=85.41 Aligned_cols=141 Identities=10% Similarity=0.113 Sum_probs=80.1
Q ss_pred CceEEecC---C--CcEEEEEecCCeeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-e
Q psy3125 1 MACTVMGL---G--RPVSWMRKRDLHILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK-M 72 (163)
Q Consensus 1 l~C~~~~~---~--~~v~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-~ 72 (163)
|.|.+.+. | ..|.|+|.+ ..+..... .....+++|.. ..+|.|.+++.+|+|.|+|++.+... .
T Consensus 23 L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 23 VTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTKPREEQFNSTFRS-------VSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp EEEEEEEECTTCCCCEEEEEETT-EEECCCEEECCCEETTTEEEE-------EEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred EEEEEeCcccCCCceEEEEEECC-ccccccccCCCcCcCCCcEEE-------EEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 68999977 3 489999843 22221000 00011233322 34699999999999999999965322 1
Q ss_pred --eEEEEE--EEEcCCCceEee-------CCCeEEEecCCC---Cc-eeEEEEeCCCeEEEec------CCCC---ceEE
Q psy3125 73 --NMAIML--NVDDRGRGARLS-------AGPLLNFAFPDL---LT-TNIYTYTGDARFSVIH------PQNS---DEWN 128 (163)
Q Consensus 73 --~~~~~l--~V~~~~~~~~v~-------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~------~~~~---~~~~ 128 (163)
...+.+ .+..++ .+.+. .|..+.+.|... +. ..+.|++++..+.... ...+ ....
T Consensus 95 ~~~~~v~~~~~~~~~P-~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~ 173 (207)
T 2vol_A 95 PIEKTISKTKGRPKAP-QVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSK 173 (207)
T ss_dssp CEEEEECCCCCCCBCC-EEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEE
T ss_pred ceEEEeccCCCCCcCC-eEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEE
Confidence 122222 222222 12111 367788999642 22 4788998766321100 1111 1234
Q ss_pred EEecccCcCCCeeEEEEc-CCCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
|.|.....+|.|.|+|.| |...
T Consensus 174 l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 174 LNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEEEHHHHSSCCEEEEEEECTTS
T ss_pred EEECHHHcCCCCEEEEEEECCCC
Confidence 777777778999999999 6543
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=78.26 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=56.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ....|+.+... ..+..+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 35 L~C~~~g~p~p~v~W~k--~~~~~~------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 105 (116)
T 2kkq_A 35 LECQISAIPPPKLFWKR--NNEMVQ------FNTDRISLYQD-NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105 (116)
T ss_dssp EEEEBCCBSCCEEEEEE--TTEECC------CCBTTEEEEEC-TTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCEEEEEE--CCEECc------CCCCeEEEEeC-CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence 679999999 9999998 332221 12467777653 234568999999999999999999 556666778888
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|..++.
T Consensus 106 ~V~~~p~ 112 (116)
T 2kkq_A 106 DVTARPN 112 (116)
T ss_dssp EEECCSC
T ss_pred EEeCCCC
Confidence 8887653
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=77.45 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=46.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.++.|.|+| ++..+ ..+.++.+..+ .+..+|.|.+++.+|+|.|+|.+.+. +..+.|.
T Consensus 26 l~C~v~~p~~~v~W~k--~g~~i-------~~~~~~~i~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~---~~~~~lt 90 (91)
T 2lvc_A 26 LACEVDREDAPVRWYK--DGQEV-------EESDFVVLENE--GPHRRLVLPATQPSDGGEFQCVAGDE---CAYFTVT 90 (91)
T ss_dssp EEEECSCTTSCCEEEE--TTSCC-------CCCSSCEEEEE--TTEEEEEESSCCGGGCSEEEEECSSC---EEEEEEE
T ss_pred EEEEECCCCcEEEEEE--CCEEe-------eeeeeeeEEec--CCeEEEEeCCCChhhcEEEEEEEcce---EEEEEEE
Confidence 6899977338999998 33222 34567777653 45778999999999999999999442 3444444
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=79.33 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=52.6
Q ss_pred CceEEecC---C-CcEEEEEecCCee-EEecceEecCCCeEEEecc----CCCCeEEEEEcccCcCCCeeEEEEe-eCCC
Q psy3125 1 MACTVMGL---G-RPVSWMRKRDLHI-LTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEP 70 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~~~~~~-~~~~~~~~~~~~r~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~ 70 (163)
|.|.+.+. | +.|.|+| +..+ +..+ ...++.+... ....+.+|.|.++..+|+|.|+|++ +..+
T Consensus 32 L~C~v~g~~~~p~P~V~W~K--gk~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g 104 (118)
T 2edn_A 32 VVAKVNGKELPDKPTIKWFK--GKWLELGSK-----SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104 (118)
T ss_dssp CCEEEETTTSSSCCCCEEEE--TTTCCCCCS-----TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSC
T ss_pred EEEEEeccCCCCCCcEEEee--CCEeccCCC-----CccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCC
Confidence 78999985 6 9999999 3211 1100 1234444321 0112688999999999999999999 5566
Q ss_pred CeeEEEEEEEEcC
Q psy3125 71 KMNMAIMLNVDDR 83 (163)
Q Consensus 71 ~~~~~~~l~V~~~ 83 (163)
..+..++|.|.++
T Consensus 105 ~~s~~~~L~V~~~ 117 (118)
T 2edn_A 105 CDSCGFNIDVEAP 117 (118)
T ss_dssp EEEEEECCEEECC
T ss_pred cEEEEEEEEEEcC
Confidence 7788888998875
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=79.70 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=52.8
Q ss_pred CceEEecC---C-CcEEEEEecCCeeEEecceEecCCCeEEEecc----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGL---G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+. | +.|.|+| +..+.... ....++.+... ....+.+|+|.+++.+|+|.|+|++ +..+.
T Consensus 27 L~C~v~g~~~~p~P~V~W~K--gk~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~ 100 (126)
T 2dav_A 27 FIAKVKAEDLLRKPTIKWFK--GKWMDLAS----KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 100 (126)
T ss_dssp EEEEEECCCSSSCCEEEEEE--SSSCCHHH----HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred EEEEEeccCCCCCCcEEEee--CcCcccCC----CCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCc
Confidence 68999875 6 9999999 32111000 01234444311 0112688999999999999999999 44566
Q ss_pred eeEEEEEEEEc-CC
Q psy3125 72 MNMAIMLNVDD-RG 84 (163)
Q Consensus 72 ~~~~~~l~V~~-~~ 84 (163)
.+..++|.|.+ ++
T Consensus 101 ~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 101 DSCSFDLEVHESTG 114 (126)
T ss_dssp EEECCEEEEECCCC
T ss_pred EEEEEEEEEEecCC
Confidence 77888999998 53
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=75.71 Aligned_cols=72 Identities=26% Similarity=0.402 Sum_probs=51.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ....++.... .....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 25 l~C~~~g~p~p~v~W~k--~~~~~~------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1u2h_A 25 MSIRVQGEPKPVVSWLR--NRQPVR------PDQRRFAEEA--EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94 (99)
T ss_dssp EEEEEEEESCCEEEEEE--TTEECC------CBTTEEEEEC--GGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEE--CCEECC------CCCCEEEEEC--CCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEE
Confidence 689999999 9999998 332221 1234555543 234568999999999999999999 445566677777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|.+
T Consensus 95 ~V~~ 98 (99)
T 1u2h_A 95 EVRG 98 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7764
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=76.31 Aligned_cols=70 Identities=19% Similarity=0.444 Sum_probs=51.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ..+.|+.+.. +.+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 28 l~C~~~g~p~p~v~W~~--~~~~~~------~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 94 (100)
T 2edj_A 28 LKCKATGDPLPVISWLK--EGFTFP------GRDPRATIQE-----QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94 (100)
T ss_dssp ECCEEECSSCCEEEEEE--SSSEES------SSCSSCEECT-----TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEE
T ss_pred EEEEEEEcCCCEEEEEE--CCEECC------CCCCCEEEcC-----CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEE
Confidence 689999999 9999998 322221 1345665543 336999999999999999999 445666778888
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|.++
T Consensus 95 ~V~~~ 99 (100)
T 2edj_A 95 DVTES 99 (100)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 88765
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=75.64 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=50.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ...+..+... ..+..+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 25 l~C~~~g~p~p~v~W~~--~g~~~~-------~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 94 (100)
T 2kdg_A 25 MDFKVSGLPAPDVSWYL--NGRTVQ-------SDDLHKMIVS-EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94 (100)
T ss_dssp EEEECEEESCCEEEEEE--TTEEEC-------CCSSSCEEEE-TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeeCCCEEEEEE--CCEECc-------CCCcEEEEEc-CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence 679999999 9999998 333322 2222211111 224578999999999999999999 455666777788
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|...
T Consensus 95 ~V~~~ 99 (100)
T 2kdg_A 95 DVLAK 99 (100)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 87654
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=78.34 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=52.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....|+.+.. .....+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 34 L~C~~~g~p~p~v~W~k--~g~~-------l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 102 (106)
T 1nct_A 34 FSCDTDGEPVPTVTWLR--KGQV-------LSTSARHQVTT--TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102 (106)
T ss_dssp CCEEEECSSCCBCCBCS--SSSC-------CTTCSSEEEEE--CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEE
T ss_pred EEEEEEEcCCCEEEEEE--CCEE-------CCCCCCEEEEE--CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEE
Confidence 689999999 9999998 2221 22456777765 235788999999999999999999 445566677777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 103 ~V~ 105 (106)
T 1nct_A 103 TIQ 105 (106)
T ss_dssp EEC
T ss_pred EEE
Confidence 764
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=77.70 Aligned_cols=72 Identities=19% Similarity=0.424 Sum_probs=46.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|. +..+ ..+.++.+.. .+.+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 30 l~C~~~g~p~p~i~W~~~--~~~~-------~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 96 (108)
T 3kvq_A 30 VSCTASGNPPPQIMWFKD--NETL-------VEDSGIVLKD----GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96 (108)
T ss_dssp EECBCC----CCEEEEES--SSBC-------CCBTTEEEET----TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEE
T ss_pred EEEECcCcCCCeEEEEEC--CeEc-------ccCCCeEEeC----CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEE
Confidence 579999999 99999983 2211 2234444442 3467999999999999999999 445677778888
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|..++.
T Consensus 97 ~V~~~~~ 103 (108)
T 3kvq_A 97 IIEGAQE 103 (108)
T ss_dssp EEEC---
T ss_pred EEeCCCc
Confidence 8887654
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=77.44 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=55.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| +...+. ....|+.+... .....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 28 l~C~~~g~p~p~v~W~k--~g~~~~------~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 98 (110)
T 2dm2_A 28 FTCRVAGNPKPKIYWFK--DGKQIS------PKSDHYTIQRD-LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98 (110)
T ss_dssp EEEEBCCSSCCEEEEEC--SSCBCC------TTCSSEEEEEC-TTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCE
T ss_pred EEEEEEecCCCEEEEEE--CCEECC------CCCCeEEEEEC-CCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence 689999999 9999998 322221 12457776653 234568999999999999999999 445667777788
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|...+
T Consensus 99 ~V~~~~ 104 (110)
T 2dm2_A 99 MVQAVN 104 (110)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 888764
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=79.99 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=56.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....|+.+... .....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 61 L~C~~~g~P~p~v~W~k--~g~~-------~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 130 (154)
T 1fhg_A 61 FDCKVEGYPDPEVMWFK--DDNP-------VKESRHFQIDYD-EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130 (154)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCCSSSEEEEEC-TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCEEEEEE--CCEE-------CCCCCcEEEEEC-CCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEE
Confidence 689999999 9999998 3322 234567776642 234678999999999999999999 555666777888
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|..++
T Consensus 131 ~V~~~p 136 (154)
T 1fhg_A 131 LVETMG 136 (154)
T ss_dssp EEECC-
T ss_pred EEeCcC
Confidence 888764
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=86.83 Aligned_cols=141 Identities=9% Similarity=0.135 Sum_probs=79.4
Q ss_pred CceEEecC---C--CcEEEEEecCCeeEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-Ce
Q psy3125 1 MACTVMGL---G--RPVSWMRKRDLHILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KM 72 (163)
Q Consensus 1 l~C~~~~~---~--~~v~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~ 72 (163)
|.|.+.+. + +.|.|+|.+ ..+.... ......+++|.. ..+|.|.+++.+|+|.|+|++.+.. ..
T Consensus 31 L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 31 VTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQTHREDYNSTIRV-------VSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp EEEEEEEECTTSCCEEEEEEETT-EEECCCEEEEEEETTTTEEEE-------EEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred EEEEEcCCccCCCceEEEEEECC-ccccCcccccccccCCCeEEE-------EEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 67999976 3 689999833 2221100 001112233332 3469999999999999999995432 22
Q ss_pred --eEEEEE--EEEcCCCceEe-------eCCCeEEEecCCC---Cc-eeEEEEeCCCeEEEec------CCCC---ceEE
Q psy3125 73 --NMAIML--NVDDRGRGARL-------SAGPLLNFAFPDL---LT-TNIYTYTGDARFSVIH------PQNS---DEWN 128 (163)
Q Consensus 73 --~~~~~l--~V~~~~~~~~v-------~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~------~~~~---~~~~ 128 (163)
...+.+ .+..++ .+.+ ..|..+.+.|... +. ..+.|++++..+.... ...+ ....
T Consensus 103 ~~~~~v~~~~~~~~~P-~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~ 181 (218)
T 2rgs_A 103 PIERTISKIKGLVRAP-QVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSK 181 (218)
T ss_dssp CEEEEECCCCCCCBCC-EEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEE
T ss_pred cceEEEeecCCCCCCC-EEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEE
Confidence 122111 122221 1211 1367788999642 23 3789998876432110 1111 1234
Q ss_pred EEecccCcCCCeeEEEEc-CCCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
|.|.....+|+|.|+|.| |...
T Consensus 182 l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 182 LNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp EEEEHHHHHHCSCEEEEEECTTS
T ss_pred EEECHHHcCCCCeEEEEEEcCCC
Confidence 667766667899999999 6543
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=74.10 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=47.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+....+. .+.++. . .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 22 l~C~~~g~P~p~i~W~k~~~~~~~~-------~~~~~~--~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 90 (93)
T 1wit_A 22 LEVDFIGAPDPTATWTVGDSGAALA-------PELLVD--A--KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EEEEEECCSSCEEEEECSTTTCBCS-------TTSEEE--E--ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEECCCCcccC-------CcEEEE--e--cCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEE
Confidence 679999999 999999832112221 111222 1 124678999999999999999999 555556666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 91 ~V 92 (93)
T 1wit_A 91 IV 92 (93)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=74.16 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=51.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCC--eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDA--RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.++.|.|+| ++..+ ..+. ||.+... ....+|.|.+++.+|+|.|+|.+.+ .+..+.|
T Consensus 27 l~C~~~~~~~~v~W~k--~g~~l-------~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l 92 (103)
T 1x44_A 27 LECEVSEDDANVKWFK--NGEEI-------IPGPKSRYRIRVE--GKKHILIIEGATKADAAEYSVMTTG---GQSSAKL 92 (103)
T ss_dssp EEEECSSSSCCCEEEE--TTEEC-------CCSTTCSEEEEEE--TTEEEEEEEEECTTTCSEEEEEETT---EEEEEEE
T ss_pred EEEEecCCCCeEEEEE--CCEEC-------CCCCceEEEEEEc--CCEEEEEECCCCcccCEEEEEEECC---CcEEEEE
Confidence 6799988339999998 33222 2333 6677652 3467899999999999999999965 4667778
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|..++
T Consensus 93 ~V~~~p 98 (103)
T 1x44_A 93 SVDLKS 98 (103)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 887764
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=74.51 Aligned_cols=69 Identities=16% Similarity=0.352 Sum_probs=50.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ + |.|+| ++.. +....++.+.. .....+|.|.+++.+|+|.|+|.+.+. ...+.|.
T Consensus 30 l~C~~~~~p~~-v~W~k--~g~~-------~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~l~ 94 (104)
T 2e6p_A 30 LTCELSRVDFP-ATWYK--DGQK-------VEESELLVVKM--DGRKHRLILPEAKVQDSGEFECRTEGV---SAFFGVT 94 (104)
T ss_dssp CCEECSSTTCC-CEEEE--TTEE-------CCCBTTBEEEE--ETTEEEEEESSCCTTTCEEEEEECSSC---CCCEEEE
T ss_pred EEEEecCCCCc-cEEee--CCEE-------CCCCCCEEEEe--CCCEEEEEECCCChhhCEEEEEEECCc---eEEEEEE
Confidence 689999999 7 99998 3322 22345666654 234678999999999999999999654 3366777
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|.+++
T Consensus 95 V~~~P 99 (104)
T 2e6p_A 95 VQDPS 99 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 77664
|
| >1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=75.71 Aligned_cols=83 Identities=16% Similarity=0.239 Sum_probs=57.2
Q ss_pred CceEEecCC--CcEEEEEecCC---e-eEEec-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CCe
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---H-ILTTN-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PKM 72 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~-~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~~ 72 (163)
|.|.+.+.. ..|.|+|.+.. . ++... .......+|+.+......+.++|.|.+++.+|+|.|.|.+... ...
T Consensus 21 L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~ 100 (113)
T 1zox_A 21 VQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDP 100 (113)
T ss_dssp EEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCC
T ss_pred EEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCc
Confidence 579998754 56999996432 1 22211 1111235788887544567899999999999999999999543 345
Q ss_pred eEEEEEEEEcC
Q psy3125 73 NMAIMLNVDDR 83 (163)
Q Consensus 73 ~~~~~l~V~~~ 83 (163)
...+.|.|..+
T Consensus 101 ~~~v~L~V~~~ 111 (113)
T 1zox_A 101 MFKVTVNIGPV 111 (113)
T ss_dssp EEEEEEEEECC
T ss_pred cEEEEEEEEcC
Confidence 67778888765
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=74.04 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+. .| +.|.|+| ++.. +..+.|+.+.. .....+|.|.+++.+|+|.|+|.+ +.....+.|.
T Consensus 28 l~C~~~-~p~~~v~W~k--~g~~-------i~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~ 92 (100)
T 2yuv_A 28 FVVELA-DPKLEVKWYK--NGQE-------IRPSTKYIFEH--KGCQRILFINNCQMTDDSEYYVTA---GDEKCSTELF 92 (100)
T ss_dssp EEEEES-CTTSCEEEEE--SSCB-------CCCBTTEEEEE--ETTEEEEEEEEECTTTCCEEEEEE---TTEEEEEEEE
T ss_pred EEEEec-CCCceEEEEE--CCEE-------CCCCCCEEEEe--cCCEEEEEEcCCCcCcCEEEEEEE---CCceEEEEEE
Confidence 679998 57 9999998 2222 22345777764 234678999999999999999999 4456677788
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|.+++
T Consensus 93 V~~~P 97 (100)
T 2yuv_A 93 VRSGP 97 (100)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 87664
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-12 Score=85.43 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=81.0
Q ss_pred CceEEecC-C--C-cEEEEEecCCeeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeE
Q psy3125 1 MACTVMGL-G--R-PVSWMRKRDLHILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~-~--~-~v~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 74 (163)
|.|.+.+. | + .|.|+| ++..++.... .....+++|.. ..+|.|.+++.+|+|.|+|++.+... ..
T Consensus 33 L~C~~~g~~P~~p~~v~W~~-~g~~~~~~~~~~~~~~~~g~~~~-------~s~L~I~~~~~~D~g~Y~C~~~~~~~-~~ 103 (231)
T 2w59_A 33 LRCLVVNLPSDSSLSVTWTR-EKSGNLRPDPMVLQEHFNGTYSA-------SSAVPVSTQDWLSGERFTCTVQHEEL-PL 103 (231)
T ss_dssp EEEEEEEESCCTTCEEEEEC-SSSSCCCCCCCEEEECTTSCEEE-------EEEEECCHHHHHTTCCEEEEEECTTC-SS
T ss_pred EEEEEeCccCCCCeEEEEEc-CCeeccccccccceECCCCcEEE-------EEEEEecchhccCCCEEEEEEEcCCC-CC
Confidence 67999984 4 3 899996 3332211111 01112334431 34699999999999999999965321 12
Q ss_pred EEEEEEEc-----CCCceEee-------CCCeEEEecCCC----CceeEEEEeCCCeEEE--------ecC--------C
Q psy3125 75 AIMLNVDD-----RGRGARLS-------AGPLLNFAFPDL----LTTNIYTYTGDARFSV--------IHP--------Q 122 (163)
Q Consensus 75 ~~~l~V~~-----~~~~~~v~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~--------~ 122 (163)
.+.+.|.. .++.+.+. .+..+.+.|... ....+.|++++..+.. ... .
T Consensus 104 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (231)
T 2w59_A 104 PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGG 183 (231)
T ss_dssp CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---
T ss_pred ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCC
Confidence 22333321 11122221 124578888642 2357899988654311 011 1
Q ss_pred C-C---ceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 123 N-S---DEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 123 ~-~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
. . ..+.|.|.....+|+|.|+|.| +...
T Consensus 184 d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l 216 (231)
T 2w59_A 184 DGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL 216 (231)
T ss_dssp CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence 1 1 1256889999999999999999 6544
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=73.52 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=48.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+ +.+ +.|.|+| ++..+ ....|+.+.. .....+|.|.+++.+|+|.|+|.+ +.....+.|.
T Consensus 28 l~C~~-~~p~~~v~W~k--~~~~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a---g~~~~~~~l~ 92 (95)
T 2k1m_A 28 FEAET-ERAGVKVRWQR--GGSDI-------SASNKYGLAT--EGTRHTLTVREVGPADQGSYAVIA---GSSKVKFDLK 92 (95)
T ss_dssp EEEEC-SSSSCCCEEEC--SSSEE-------CSSTTCEEEE--ETTEEEEEESSCCTTCCSEEEEEE---TTEEEEEEEE
T ss_pred EEEEe-CCCCCeEEEEE--CCEEC-------CCCCcEEEEE--cCCEEEEEEcCCCcccCEEEEEEE---CCceEEEEEE
Confidence 67999 667 9999998 32222 2455777664 234678999999999999999999 3345566777
Q ss_pred EE
Q psy3125 80 VD 81 (163)
Q Consensus 80 V~ 81 (163)
|.
T Consensus 93 V~ 94 (95)
T 2k1m_A 93 VI 94 (95)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=80.01 Aligned_cols=143 Identities=16% Similarity=0.285 Sum_probs=87.2
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-e
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~ 72 (163)
|.|.....- .-+.|+++.. +.++......... -.||.... ...+++|.|.+++.+|++.|.|+... .+. +
T Consensus 21 isC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~--Sgt~ftLtIs~lq~eD~A~YyC~~~~~~~~tF 98 (259)
T 4f9l_D 21 ITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSG--SATGFTLTISSLQPEDIATYYCQQGHSYPYTF 98 (259)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEECSSSSCCB
T ss_pred EEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeec--cCCeEEEEEcccChhhCEEEEEeecCCCCCCc
Confidence 578876554 5689998643 2333322222211 24887664 34689999999999999999998732 110 0
Q ss_pred eEEEEEE-----------------------------EEcCCCceEeeCCCeEEEecCC----CCceeEEEEeC-------
Q psy3125 73 NMAIMLN-----------------------------VDDRGRGARLSAGPLLNFAFPD----LLTTNIYTYTG------- 112 (163)
Q Consensus 73 ~~~~~l~-----------------------------V~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~------- 112 (163)
-.-+.|+ +++.+. -.+.+|..+.+.|.. ...-.+.|++.
T Consensus 99 G~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~-~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLE 177 (259)
T 4f9l_D 99 GGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGA-ELVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLE 177 (259)
T ss_dssp CCCCEECBCCC----------------------CCCEEEECC-CEEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCEE
T ss_pred cCCeEEEEeccccCccccccccccccccCCccccceEEeECC-CEECCCCcEEEEEeeeCCCcccCcEEEEEECCCCceE
Confidence 0001111 111121 245677788888842 11122333321
Q ss_pred ------------------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 ------------------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ------------------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..||.+......+...|++.+++.+|+..|+|..
T Consensus 178 wvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr 229 (259)
T 4f9l_D 178 WIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSR 229 (259)
T ss_dssp EEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEE
Confidence 2377777766677889999999999999999975
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-12 Score=75.00 Aligned_cols=70 Identities=24% Similarity=0.521 Sum_probs=51.9
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+.++.|.|+| ++.. +..+.|+.+... ....+|.|.+++.+|+|.|+|.+.+ ....+.|.|
T Consensus 28 l~C~~~~~~~~v~W~k--~g~~-------~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V 93 (103)
T 2edf_A 28 LRCELSRAGTPVHWLK--DRKA-------IRKSQKYDVVCE--GTMAMLVIRGASLKDAGEYTCEVEA---SKSTASLHV 93 (103)
T ss_dssp ECCEESSSSCCCCEEE--SSCB-------CCCSSSEEEEEE--TTEEEEEESSCCTTTCSEEEEECSS---CEEEEEEEE
T ss_pred EEEEEeCCCCcEEEEE--CCEE-------ccCCCCEEEEEC--CCEEEEEECCCCcccCEEEEEEEcc---CCcEEEEEE
Confidence 6899998338999998 3222 223457777652 3477899999999999999999965 366777888
Q ss_pred EcCC
Q psy3125 81 DDRG 84 (163)
Q Consensus 81 ~~~~ 84 (163)
..++
T Consensus 94 ~~~p 97 (103)
T 2edf_A 94 EEKA 97 (103)
T ss_dssp CCCS
T ss_pred eCCC
Confidence 7664
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-13 Score=100.02 Aligned_cols=143 Identities=8% Similarity=0.046 Sum_probs=83.3
Q ss_pred CceEEecC-C-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGL-G-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~-~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+. | + .|.|+|.+.......... ....++|... .+|.|.+++.+| |.|+|.+.+ .+......
T Consensus 139 L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~ 209 (434)
T 1igy_B 139 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VLQSDLYTLS-------SSVTVPSSPRPS-ETVTCNVAHPASSTKVDK 209 (434)
T ss_dssp EEEEEEEEBSSCCEEEETTTTBCSSEEECCC-EECSSCEEEE-------EEEEEETTTTTS-SCCEEEEECTTTTCCEEE
T ss_pred EEEEEeeecCCCeEEEEeeCCcCCCeEecCc-eecCCcEEEE-------EEEEEcchhcCC-CcEEEEEEeCCCCcccee
Confidence 57999986 6 5 999987321100100000 1111333322 359999999999 999999954 33322222
Q ss_pred EEEEE------------------cCCCceE--eeCCCeEEEecCCCC------ceeEEEEeCCCeEEEec------CC--
Q psy3125 77 MLNVD------------------DRGRGAR--LSAGPLLNFAFPDLL------TTNIYTYTGDARFSVIH------PQ-- 122 (163)
Q Consensus 77 ~l~V~------------------~~~~~~~--v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~-- 122 (163)
.+.+. ..++... +..|..+.+.|.... ...+.|++++..+.... ..
T Consensus 210 ~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~ 289 (434)
T 1igy_B 210 KIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNS 289 (434)
T ss_dssp ECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSS
T ss_pred eccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCC
Confidence 22111 1111112 567888999996321 24688988876432110 00
Q ss_pred -CCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 123 -NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 123 -~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
......|.|.+++.+|+|.|+|.| |..+..
T Consensus 290 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 321 (434)
T 1igy_B 290 TFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA 321 (434)
T ss_dssp SCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred cEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence 012346999999999999999999 766543
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-12 Score=75.09 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=60.8
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCe--------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR--------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
.+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|.
T Consensus 11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 88 (100)
T 3knb_A 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TDDLTTLIIMDVQKQDGGLYTLSLGNEFGS 88 (100)
T ss_dssp CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec--ccceEEEEEcCCCccCCEEEEEEEEECCCE
Confidence 3445677888999999963 45568899987653 33322 234567999999999999999999 99999
Q ss_pred ccEEEEEEEec
Q psy3125 152 MNMAIMLNVDG 162 (163)
Q Consensus 152 ~~~~~~L~V~~ 162 (163)
.+..+.|.|++
T Consensus 89 ~~~~~~l~V~~ 99 (100)
T 3knb_A 89 DSATVNIHIRS 99 (100)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEE
Confidence 99999999975
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-12 Score=77.07 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=53.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|. +..+. ...++.+... ..+..+|.|.+++.+|+|.|+|.+. ..+..+..+.|
T Consensus 29 l~C~~~g~p~p~v~W~~~-g~~~~--------~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 98 (110)
T 2dm3_A 29 MDCKVSGLPTPDLSWQLD-GKPVR--------PDSAHKMLVR-ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98 (110)
T ss_dssp CEEEEECSSCCEEECBBS-SSBCC--------CCSSEEEEEC-TTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEE
T ss_pred EEEEEEEcCCCEEEEEEC-CEECC--------CCCceEEEEe-cCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEE
Confidence 789999999 99999982 22221 2222222221 2346789999999999999999994 45566778888
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|..++.
T Consensus 99 ~V~~~p~ 105 (110)
T 2dm3_A 99 VVAAKES 105 (110)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 8887653
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=76.83 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccC--CCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.|.| +.|.|+| ++..+. .+.++.+.... .....+|.|.+++.+|+|.|+|.+ |..+.....+
T Consensus 25 l~C~~~g~P~p~i~W~k--~g~~l~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 95 (118)
T 1wwc_A 25 IEFVVRGNPPPTLHWLH--NGQPLR-------ESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95 (118)
T ss_dssp EEEEEECSSCCEEEEEE--TTEECC-------CSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEeeeeCCCeEEEEE--CCEECC-------CCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEE
Confidence 579999999 9999998 333222 23333332211 113568999999999999999999 5566666777
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|...+
T Consensus 96 ~l~v~~~P 103 (118)
T 1wwc_A 96 NGHFLKEP 103 (118)
T ss_dssp EECCSCCC
T ss_pred EEEEccCC
Confidence 77766554
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-12 Score=75.65 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=50.6
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+.+..|.|+| ++..+ ....|+.+.. .....+|.|.+++.+|+|.|+|.+.+. ..+..+.|.|
T Consensus 28 l~C~~~~~~~~v~W~k--~g~~~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~~l~V 95 (106)
T 2dlt_A 28 FKCEVSDEKVTGKWYK--NGVEV-------RPSKRITISH--VGRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNF 95 (106)
T ss_dssp CCCEESCSSCEEEEEE--SSCBC-------CCCSSCEEEE--ETTEEEEEESSCCTTTCSCEEEEEETS-CCCCCBCEEE
T ss_pred EEEEEcCCCcceEEEc--CCEEC-------cCCCCEEEEE--eCCEEEEEECCCCcCCCEEEEEEEccC-CceEEEEEEE
Confidence 7899999883399998 32222 2345776664 234678999999999999999999665 4455666776
Q ss_pred Ec
Q psy3125 81 DD 82 (163)
Q Consensus 81 ~~ 82 (163)
..
T Consensus 96 ~~ 97 (106)
T 2dlt_A 96 LE 97 (106)
T ss_dssp EC
T ss_pred EE
Confidence 64
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-12 Score=76.41 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=52.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ +.|.|+| ++..+ ..++|+.+.. ..+..+|.|.+++.+|+|.|+|.+.+ ....+.|
T Consensus 28 l~C~v~~~~~~~~v~W~k--~g~~i-------~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~a~L 93 (104)
T 2eny_A 28 FECVLSHESASDPAMWTV--GGKTV-------GSSSRFQATR--QGRKYILVVREAAPSDAGEVVFSVRG---LTSKASL 93 (104)
T ss_dssp EEEECSSCCCSSCBCCBS--SSSBC-------SBCSSCEEEE--ETTEEEEEECSCCTTTCSCEEEEETT---EEEEECE
T ss_pred EEEEEcCCCCCceeEEEE--CCEEC-------CCCCCEEEEE--cCCEEEEEECCCCHHHCEEEEEEECC---eeEEEEE
Confidence 689999887 4799997 32222 2355777765 23577899999999999999999843 3567778
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|.+++
T Consensus 94 ~V~~~p 99 (104)
T 2eny_A 94 IVRERS 99 (104)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 888764
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=74.15 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=49.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCC----eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDA----RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~ 76 (163)
|.|.+.+.++.|.|+| ++..+. ... ||.+.. .....+|.|.+++.+|+|.|+|.+.+ ....+
T Consensus 28 l~C~~~~~~~~v~W~k--~g~~i~-------~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~ 93 (101)
T 2edk_A 28 MAVEVSEEGAQVMWMK--NGVELT-------REDSFKARYRFKK--DGKRHILIFSDVVQEDRGRYQVITNG---GQCEA 93 (101)
T ss_dssp CCEEESCSSCCCEEEE--SSCBCC-------CSCCSSCCCEEEE--CSSEEEEECSSCCGGGCSBEEEECSS---CEECC
T ss_pred EEEEEeCCCCEEEEEE--CCEECC-------CCCCcceeEEEEE--CCCEEEEEECCCChhhCEEEEEEEcC---CcEEE
Confidence 6899998889999998 322221 222 667664 34567899999999999999999964 33445
Q ss_pred EEEEEcC
Q psy3125 77 MLNVDDR 83 (163)
Q Consensus 77 ~l~V~~~ 83 (163)
.|.|.++
T Consensus 94 ~l~V~~~ 100 (101)
T 2edk_A 94 ELIVEEK 100 (101)
T ss_dssp BEEEECC
T ss_pred EEEEeCC
Confidence 5666654
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=72.55 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=60.9
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+. +.. .......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 89 (99)
T 1g1c_A 11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW-PEDNVCELVIRDVTGEDSASIMVKAINIAGETS 89 (99)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEE-cCCCEEEEEECCCCcCCCEEEEEEEEECCCcEE
Confidence 3445677888889999963 3556788988765322 111 1133557999999999999999999 9999999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.+|
T Consensus 90 ~~~~l~V~~~ 99 (99)
T 1g1c_A 90 SHAFLLVQAK 99 (99)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 9999999986
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-11 Score=73.18 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=51.9
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+. +.|.|+| +... +....|+.+... ....+|.|.+++.+|+|.|+|.+ +.....+.|.|
T Consensus 39 l~C~~~~~-p~v~W~k--~~~~-------l~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l~V 103 (113)
T 2edh_A 39 LRCELSKM-APVEWWK--GHET-------LRDGDRHSLRQD--GARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTV 103 (113)
T ss_dssp EEEEESSC-CCCEEEE--SSSB-------CCCSSSEEEEEE--TTEEEEEECSCCSTTCEEEEEEE---TTEEEEEEEEE
T ss_pred EEEEECCC-CcEEEEE--CCEE-------CCCCCcEEEEEC--CCEEEEEECCCChhhCEEEEEEe---CCCCEEEEEEE
Confidence 57999775 7899998 2222 223568877752 34678999999999999999999 45666778888
Q ss_pred EcCC
Q psy3125 81 DDRG 84 (163)
Q Consensus 81 ~~~~ 84 (163)
..++
T Consensus 104 ~~~p 107 (113)
T 2edh_A 104 RAMP 107 (113)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 7764
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-11 Score=74.70 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=53.8
Q ss_pred CceEEecC----C-CcEEEEEecCC---e--eEEec-ceEec-----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL----G-RPVSWMRKRDL---H--ILTTN-IYTYT-----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~----~-~~v~W~k~~~~---~--~~~~~-~~~~~-----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+... + ..|.|+|.+.. . ++... +.... ..+|+.+......++.+|.|.+++.+|+|.|.|
T Consensus 19 L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 98 (124)
T 1neu_A 19 LHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTC 98 (124)
T ss_dssp ECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhhCEEEEE
Confidence 68998753 4 88999986432 1 22222 22221 146888764323457889999999999999999
Q ss_pred EeeCCCC---eeEEEEEEEEcCC
Q psy3125 65 QVNTEPK---MNMAIMLNVDDRG 84 (163)
Q Consensus 65 ~~~~~~~---~~~~~~l~V~~~~ 84 (163)
.+.+.+. ....+.|.|.+.+
T Consensus 99 ~v~~~~~~~~~~~~v~L~V~~~p 121 (124)
T 1neu_A 99 DVKNPPDIVGKTSQVTLYVFEKV 121 (124)
T ss_dssp EEEC----CCEEEEEEEEEEC--
T ss_pred EEEcCCCCcCcEeeEEEEEecCC
Confidence 9965332 3567788887764
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=73.19 Aligned_cols=69 Identities=16% Similarity=0.382 Sum_probs=51.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ + |.|+| +...+ ....|+.+.. .....+|.|.+++.+|+|.|+|.+ +.....+.|.
T Consensus 28 l~C~~~~~p~~-v~W~k--~~~~l-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~ 92 (103)
T 2e7b_A 28 LRCVLSSVAAP-VKWCY--GNNVL-------RPGDKYSLRQ--EGAMLELVVRNLRPQDSGRYSCSF---GDQTTSATLT 92 (103)
T ss_dssp EEEECSSCCCS-CEEEE--SSSBC-------CCSSSEEEEE--CSSEEEEEECSCCTTTCCCEEEEC---SSCBCCBCEE
T ss_pred EEEEEeCCCCC-eEEEE--CCEEC-------CCCCcEEEEE--cCCEEEEEEccCCcccCEEEEEEE---CCcEEEEEEE
Confidence 689999999 7 99998 22222 2356777775 345778999999999999999994 3345556777
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|.+++
T Consensus 93 V~~~p 97 (103)
T 2e7b_A 93 VTALP 97 (103)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 77664
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-11 Score=71.97 Aligned_cols=69 Identities=14% Similarity=0.335 Sum_probs=51.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+. .| +.|.|+| ++..+ ....|+.+.. .....+|.|.+++.+|+|.|+|.+.+ .+..+.|.
T Consensus 33 L~C~~~-~p~~~v~W~k--~g~~~-------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~ 97 (113)
T 2cpc_A 33 LTCELC-RPWAEVRWTK--DGEEV-------VESPALLLQK--EDTVRRLVLPAVQLEDSGEYLCEIDD---ESASFTVT 97 (113)
T ss_dssp EEEEES-CTTCCCEEEE--TTEEC-------CCBTTBEEEE--CSSEEEEEESSCCTTTCEEEEEESSS---CEEEEEEE
T ss_pred EEEEec-CCCCeEEEEE--CCEEC-------ccCCCEEEEE--CCCEEEEEECCCCcccCEEEEEEEec---CcEEEEEE
Confidence 579996 66 9999998 33222 2345666664 23457899999999999999999965 56677888
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|..++
T Consensus 98 V~~~p 102 (113)
T 2cpc_A 98 VTEPP 102 (113)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 88765
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-11 Score=72.72 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=60.8
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~ 155 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.| |..|..+..
T Consensus 19 ~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 98 (107)
T 3knb_B 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98 (107)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence 3445678889999999964 4556789998765332111 11234567999999999999999999 999999999
Q ss_pred EEEEEec
Q psy3125 156 IMLNVDG 162 (163)
Q Consensus 156 ~~L~V~~ 162 (163)
+.|.|..
T Consensus 99 ~~l~V~~ 105 (107)
T 3knb_B 99 AAVTVLE 105 (107)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999975
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=82.09 Aligned_cols=141 Identities=8% Similarity=0.095 Sum_probs=78.3
Q ss_pred CceEEecC---C-C-cEEEEEecCCeeEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-e
Q psy3125 1 MACTVMGL---G-R-PVSWMRKRDLHILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK-M 72 (163)
Q Consensus 1 l~C~~~~~---~-~-~v~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-~ 72 (163)
|.|.+.+. | + .|.|+|.+ ..+.... ......+++|. ...+|.|.+++.+|+|.|+|++.+... .
T Consensus 37 L~C~~~g~~~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~-------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 37 VTCVVVDISQNDPEVRFSWFIDD-VEVHTAQTHAPEKQSNSTLR-------SVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp EEEEEEEECTTCCCCEEEEEESS-CEECCCEECCCEECTTSCEE-------EEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred EEEEEecCccCCCCCEEEEEECC-ccccCcccccceEcCCCcEE-------EEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 68999987 6 5 89999844 3332110 00111223332 235799999999999999999965322 1
Q ss_pred eEEEEE----EEEcCCCceEe-------eCCCeEEEecCCC---C-ceeEEEEeCCCeEEE--ec----CCCC---ceEE
Q psy3125 73 NMAIML----NVDDRGRGARL-------SAGPLLNFAFPDL---L-TTNIYTYTGDARFSV--IH----PQNS---DEWN 128 (163)
Q Consensus 73 ~~~~~l----~V~~~~~~~~v-------~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~~----~~~~---~~~~ 128 (163)
.....+ .+..++ .+.+ ..|..+.+.|... + ...+.|++++..+.. .. ...+ ....
T Consensus 109 ~~~~~v~~~~~~~~~P-~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~ 187 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGP-QVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSK 187 (239)
T ss_dssp CEEEEECCCSSCCBCC-EEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCcCC-EEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEE
Confidence 111122 111121 1111 1245688888642 2 246889987653310 00 1111 1234
Q ss_pred EEecccCcCCCeeEEEEc-CCCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
|.|.....+|.|.|+|.| +...
T Consensus 188 l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 188 LNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEChhhcCCCCEEEEEEECCCC
Confidence 666666667899999999 6543
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=75.02 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=52.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.| +.|.|+| ++..+ ..+.|+.+... ..+..+|.|.+++.+|+|.|+|.+ +.....+.|.
T Consensus 33 l~C~~~g~p~p~v~W~k--~g~~l-------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~L~ 99 (115)
T 2cr6_A 33 FRCRISPANYEPVHWFL--DKTPL-------HANELNEIDAQ-PGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALR 99 (115)
T ss_dssp CCCEEESTTCCSCEEEE--SSCEE-------CCSSSCCBCCB-TTTBCCBEECSCCTTTCEEEEEEE---TTEECCEEEE
T ss_pred EEEEEcCCCCCccEEEE--CCEEC-------CCCCcEEEEEc-CCCEEEEEEcCCChhhCEEEEEEE---CCeeEEEEEE
Confidence 789999999 8999998 33222 23455555421 234667999999999999999995 3445567888
Q ss_pred EEcCCC
Q psy3125 80 VDDRGR 85 (163)
Q Consensus 80 V~~~~~ 85 (163)
|..++.
T Consensus 100 V~~~p~ 105 (115)
T 2cr6_A 100 VTEKPS 105 (115)
T ss_dssp EECCSS
T ss_pred EECCCc
Confidence 887653
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=92.98 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=76.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeE-EecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CCeeEE
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHIL-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PKMNMA 75 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~~~~~ 75 (163)
|.|.+.+. | +.|.|+|.+ ..+. .........+++|... ..|.|.+++.+| |.|+|++.+. ......
T Consensus 152 L~C~~~g~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~ 222 (457)
T 1hzh_H 152 LGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSNTKVD 222 (457)
T ss_dssp EEEEEESBBSCCCEEEETTTT-BCTTEEEEEEEECTTSCEEEE-------EEEEECSGGGGT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEEeEEeCCCeEEEEEeCC-EeccceEcCceECCCCCEEEE-------EEEEecccccCC-ceEEEEEEeCCCCccee
Confidence 57999987 4 689998732 1110 0011111233444322 369999999999 9999999542 222222
Q ss_pred EEEEEEc------------------------CCCce-EeeCCCeEEEecCCC--Cc----eeEEEEeCCCeEEE------
Q psy3125 76 IMLNVDD------------------------RGRGA-RLSAGPLLNFAFPDL--LT----TNIYTYTGDARFSV------ 118 (163)
Q Consensus 76 ~~l~V~~------------------------~~~~~-~v~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~------ 118 (163)
..+.+.. ++... .+..|..+.+.|... +. ..+.|++++..+..
T Consensus 223 ~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~ 302 (457)
T 1hzh_H 223 KKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 302 (457)
T ss_dssp EECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE
T ss_pred EEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc
Confidence 2222110 11100 134577888888632 22 27889988754321
Q ss_pred ecCCCCc---eEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 119 IHPQNSD---EWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 119 ~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.....+. ...|.|.....+|+|.|+|.| |..+...
T Consensus 303 ~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~ 341 (457)
T 1hzh_H 303 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 341 (457)
T ss_dssp EECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSC
T ss_pred eecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCc
Confidence 1111111 122334444445599999999 6654443
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=71.14 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=60.5
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
..+....+..|..+.+.|.. .+.+.+.|++++..+... .........|.|.+++.+|+|.|+|.| |..|..+
T Consensus 10 ~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~ 89 (99)
T 1u2h_A 10 VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ 89 (99)
T ss_dssp ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCcee
Confidence 34445677888889999963 345678898876532211 011233457999999999999999999 8899999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.++
T Consensus 90 ~~~~l~V~~~ 99 (99)
T 1u2h_A 90 CEARLEVRGE 99 (99)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEEECC
Confidence 9999999985
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=83.69 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=50.3
Q ss_pred cCcCCCeeEEEEeeCCCCeeEEEEEE------EEcCCCceEeeCCCeEEEecCCC--C-----ceeEEEEeCC-------
Q psy3125 54 AQKRDAGIYECQVNTEPKMNMAIMLN------VDDRGRGARLSAGPLLNFAFPDL--L-----TTNIYTYTGD------- 113 (163)
Q Consensus 54 v~~~D~G~Y~C~~~~~~~~~~~~~l~------V~~~~~~~~v~~~~~~~~~~~~~--~-----~~~~~~~~~~------- 113 (163)
++.+|+|.|+|.+. +.....+.+. +...+....+..|..+.+.|... + ...+.|++..
T Consensus 11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~ 88 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR 88 (254)
T ss_dssp -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred ecCCccEEEEEcCc--hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence 68899999999996 2222222222 22224456778899999999632 2 2678898632
Q ss_pred -------------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 114 -------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 114 -------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
.|+.+.. ......|.|.+++.+|+|.|+|.| +..+. ....+.|.|.
T Consensus 89 ~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~ 149 (254)
T 2c1o_A 89 LIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK 149 (254)
T ss_dssp EEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred EEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence 1232221 123557999999999999999999 55332 2223345553
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=72.16 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=47.1
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~ 79 (163)
|.|.+.+.|+.|.|+| ++..+ ..+.|+.+. +.+|.|.+++.+|+|.|+|.+. ..+.....+.|.
T Consensus 29 l~C~~~g~pp~i~W~k--~g~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 93 (95)
T 2ckn_A 29 LRCRLRDDVQSINWLR--DGVQL-------VESNRTRIT------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93 (95)
T ss_dssp EECCEESSCCEEEEEB--TTBCC-------CCCSSEEEC------SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEECCCCCCceEEEE--CCEec-------CCCCCEEEe------CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEE
Confidence 5799999889999998 32222 234566554 3479999999999999999994 445555666665
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 94 V 94 (95)
T 2ckn_A 94 V 94 (95)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=75.41 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=51.6
Q ss_pred CceEEecCC----CcEEEEEecCCe-eEEe-cceEe------cCCCeEEEeccCC-CCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH-ILTT-NIYTY------TGDARFSVIHPQN-SDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~-~~~~-~~~~~------~~~~r~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+...+ ..|.|+|.+... ++.. ..... ...+|+.+..... .++++|.|.+++.+|+|.|+|++.
T Consensus 25 L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~ 104 (125)
T 4gos_A 25 LSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYII 104 (125)
T ss_dssp EEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHCEEEEEEEE
Confidence 689987543 469999854322 2211 11111 1135777765321 347899999999999999999994
Q ss_pred -CCCCeeEEEEEEE
Q psy3125 68 -TEPKMNMAIMLNV 80 (163)
Q Consensus 68 -~~~~~~~~~~l~V 80 (163)
..+.....+.|+|
T Consensus 105 ~~~g~~~~~v~LkV 118 (125)
T 4gos_A 105 TSKGKGNANLEYKT 118 (125)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred eCCCeEEEEEEEEE
Confidence 4445566667766
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=76.08 Aligned_cols=71 Identities=23% Similarity=0.491 Sum_probs=52.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ..+.|+.+.. +.+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 28 l~C~~~g~p~p~i~W~k--~g~~~~------~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 94 (118)
T 2eo9_A 28 LSCVATGSPVPTILWRK--DGVLVS------TQDSRIKQLE-----NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94 (118)
T ss_dssp EECBCCCSSCCEEEEEE--SSSBCC------TTSTTEEEEE-----TTEEEEESCCGGGCCCEEEEEECSSCEEEEECCE
T ss_pred EEEEEEecCCCEEEEEE--CCEECc------CCCCeEEEcc-----CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEE
Confidence 679999999 9999998 322221 1345666654 2379999999999999999994 45566677778
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|.+++
T Consensus 95 ~V~~~~ 100 (118)
T 2eo9_A 95 EVQEFG 100 (118)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 888764
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-11 Score=71.93 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=46.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCC-CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGD-ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+ +.| +.|.|+| ++..+ ..+ .|+.+... .+..+|.|.+++.+|+|.|+|.+.+ ....+.|
T Consensus 36 L~C~~-~~p~~~v~W~k--~g~~l-------~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~~~l 100 (104)
T 1pd6_A 36 LTVEL-ADHDAEVKWLK--NGQEI-------QMSGSKYIFESI--GAKRTLTISQCSLADDAAYQCVVGG---EKCSTEL 100 (104)
T ss_dssp EEEEC-SSSSSCCEEEE--SSSEE-------CCCSSSSEEEEE--TTEEEEEECSCSSSSCEEEEEEETT---EEECCEE
T ss_pred EEEEE-cCCCCEEEEEE--CCEEC-------CCCCCeEEEEec--CCEEEEEECCCCcccCEEEEEEECC---CcEEEEE
Confidence 67999 677 8999998 33222 223 57776642 3467899999999999999999933 3344556
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 101 ~V~ 103 (104)
T 1pd6_A 101 FVK 103 (104)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=71.50 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=58.7
Q ss_pred CceEeeCCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 85 RGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
....+..|..+.+.|.....+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+..+.|.|..
T Consensus 9 ~~~~v~~G~~~~l~C~~~~~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 87 (95)
T 4hwu_A 9 EAYVVAPGESLELQCMLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTD 87 (95)
T ss_dssp EEEEECTTSCEEEECCCCTTCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred CcEEECCCCEEEEEEEeCCCCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeC
Confidence 34567789999999986667788999876543211111111236999999999999999999 8889999999999864
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=72.63 Aligned_cols=69 Identities=17% Similarity=0.337 Sum_probs=49.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~ 79 (163)
|.|.+.+.|+.|.|+|. ...+ ....|+.+. ..+|.|.+++.+|+|.|+|.+. ..+.....+.|.
T Consensus 23 L~C~~~g~pp~i~W~k~--g~~~-------~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 87 (99)
T 2cr3_A 23 LRCRLRDDVQSINWLRD--GVQL-------AESNRTRIT------GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87 (99)
T ss_dssp EECCCCSSCCEEEEEES--SSBC-------CCCSSEEEC------SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEecCCCCeEEEEEC--CEEC-------CCCCcEEEE------CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence 57999987799999983 2222 223455544 2379999999999999999994 445556666677
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|...+
T Consensus 88 V~~~~ 92 (99)
T 2cr3_A 88 VSDAL 92 (99)
T ss_dssp BCSCC
T ss_pred EecCC
Confidence 66553
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-11 Score=79.42 Aligned_cols=140 Identities=8% Similarity=0.115 Sum_probs=72.5
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEEecc---eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-C
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILTTNI---YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K 71 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~ 71 (163)
|.|.+.+.+ ..|.|+| ++..+..+. .....++++.+. ..|.|.....+|+|.|+|++.+.. .
T Consensus 23 L~C~~~g~~p~~~~~~v~W~k--~~~~~~~~~~~~~~~~~~g~~~~~-------~~l~i~~~d~~d~g~Y~C~a~n~~~~ 93 (207)
T 1l6x_A 23 VTCVVVDVSHEDPEVKFNWYV--DGVEVHNAKTKPREEQYNSTYRVV-------SVLTVLHQDWLNGKEYKCKVSNKALP 93 (207)
T ss_dssp EEEEEEEECSSSCCCEEEEEE--TTEEECCCEECCCEECTTSCEEEE-------EEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred EEEEEecccCCCCCeEEEEEE--CCccccCcccCCceeccCCcEEEE-------EEEEEEHHHccCCceEEEEEEcCcCC
Confidence 689999864 3899998 332221110 011112222222 124454555566999999995532 2
Q ss_pred eeEEEEEE----EEcCCCceEee-------CCCeEEEecCCC---C-ceeEEEEeCCCeEEEec------CCCC---ceE
Q psy3125 72 MNMAIMLN----VDDRGRGARLS-------AGPLLNFAFPDL---L-TTNIYTYTGDARFSVIH------PQNS---DEW 127 (163)
Q Consensus 72 ~~~~~~l~----V~~~~~~~~v~-------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~------~~~~---~~~ 127 (163)
......+. +..++ .+.+. .+..+.+.|... + ...+.|++++..+.... ...+ ...
T Consensus 94 ~~~~~~v~~~~~~~~~P-~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s 172 (207)
T 1l6x_A 94 APIEKTISKAKGQPREP-QVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS 172 (207)
T ss_dssp SCEEEEECCCCSCCBCC-EEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEE
T ss_pred cceEEEeccCCCCCcCC-EEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEE
Confidence 21222221 11221 11111 234588888642 2 24788998876432110 1111 123
Q ss_pred EEEecccCcCCCeeEEEEc-CCCC
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
.|.|.....+|+|.|+|.| |...
T Consensus 173 ~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 173 KLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEECHHHcCCCCEEEEEEEcCCc
Confidence 4667777778899999999 6543
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=86.82 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=78.1
Q ss_pred CceEEecC-C--CcEEEEEecCCee-EEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEE
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHI-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~ 75 (163)
|.|.+.+. | +.|.|+|. +..+ ..........+++|... ..|.|.+++.+| |.|+|.+.+ .+.....
T Consensus 140 L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~ 210 (344)
T 1za6_B 140 LGCLVKDYFPEPVTVSWNSG-ALTSGVHTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSNTKVD 210 (344)
T ss_dssp EEEEEEEEBSSCCCEEETTT-TBCTTEEECCCEECTTSCEEEE-------EEEEEETTHHHH-BCEEEEEEEGGGTEEEE
T ss_pred EEEEEeeEECCCeEEEEecC-CccCceeECCCeECCCCCEEEE-------EEEEEcHHHcCC-CcEEEEEEeCCCCccce
Confidence 57999986 5 69999873 2211 01011111234455433 359999999888 999999954 3222221
Q ss_pred EEEE--E---------------------EcCCCceEee-------CCCeEEEecCCC----CceeEEEEeCCCeEEEe--
Q psy3125 76 IMLN--V---------------------DDRGRGARLS-------AGPLLNFAFPDL----LTTNIYTYTGDARFSVI-- 119 (163)
Q Consensus 76 ~~l~--V---------------------~~~~~~~~v~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-- 119 (163)
..+. | ...++.+.+. .+..+.+.|... ....+.|++++..+...
T Consensus 211 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 290 (344)
T 1za6_B 211 KKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT 290 (344)
T ss_dssp EEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEE
T ss_pred EeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEe
Confidence 1111 0 0011111111 234488888642 23568898877643211
Q ss_pred c----CCCC---ceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 120 H----PQNS---DEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 120 ~----~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
. ...+ ....|.|.....+|+|.|+|.| +...
T Consensus 291 ~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l 329 (344)
T 1za6_B 291 TPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 329 (344)
T ss_dssp CCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTS
T ss_pred cceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCC
Confidence 0 1111 1245788888888999999999 6543
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=73.70 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCceEeeCCCeEEEecCC-----CCceeEEEEeCC---------CeEEEecC----CCCceEEEEecccCcCCCeeEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD-----LLTTNIYTYTGD---------ARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
+..+.+..|..+.+.|.. .+.+.+.|+++. .++.+... .......|+|.++.+.|+|.|+|+
T Consensus 19 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce 98 (118)
T 2edn_A 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE 98 (118)
T ss_dssp CCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence 456778889999999853 256799998863 34443221 111257899999999999999999
Q ss_pred c-CCCCCccEEEEEEEec
Q psy3125 146 V-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~~ 162 (163)
| |..+..+..+.|+|+.
T Consensus 99 vsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 99 VKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp EECSSCEEEEEECCEEEC
T ss_pred EEEcCCcEEEEEEEEEEc
Confidence 9 9999999999999975
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-11 Score=70.39 Aligned_cols=68 Identities=28% Similarity=0.464 Sum_probs=48.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~ 79 (163)
|.|.+.+ ++.|.|+| ++..+ ....|+.+.. .+|.|.+++.+|+|.|+|.+. ..+.....+.|.
T Consensus 21 l~C~~~~-~p~v~W~k--~g~~~-------~~~~~~~~~~------~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 84 (95)
T 4hwu_A 21 LQCMLKD-AAVISWTK--DGVHL-------GPNNRTVLIG------EYLQIKGATPRDSGLYACTAARTVDSETWIFMVN 84 (95)
T ss_dssp EECCCCT-TCEEEEEE--TTEEE-------CCCSSEEEET------TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeCC-CCEEEEEE--CCEEC-------CCCceEEEeC------CEEEECcCCcccCEEEEEEEccCCCcEEEEEEEE
Confidence 5788876 48999998 33322 3345666542 369999999999999999994 455666777777
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|.++.
T Consensus 85 V~~~~ 89 (95)
T 4hwu_A 85 VTDAA 89 (95)
T ss_dssp ECCC-
T ss_pred EeCCc
Confidence 77664
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=72.94 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=54.1
Q ss_pred CceEEecCC-C----cEEEEEecCC------eeE-EecceEe-----cCCCeEEEecc-CCCCeEEEEEcccCcCCCeeE
Q psy3125 1 MACTVMGLG-R----PVSWMRKRDL------HIL-TTNIYTY-----TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIY 62 (163)
Q Consensus 1 l~C~~~~~~-~----~v~W~k~~~~------~~~-~~~~~~~-----~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y 62 (163)
|+|.+.+.+ . .|.|+|.+.. .++ ..+.... ...+|+.+... ...++++|.|.+++.+|+|.|
T Consensus 25 L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 104 (126)
T 1eaj_A 25 LPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTY 104 (126)
T ss_dssp ECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCChHHCeEE
Confidence 689998776 3 3999986432 222 2222221 12467777653 223468899999999999999
Q ss_pred EEEeeC-CCCeeEEEEEEEEcC
Q psy3125 63 ECQVNT-EPKMNMAIMLNVDDR 83 (163)
Q Consensus 63 ~C~~~~-~~~~~~~~~l~V~~~ 83 (163)
.|.+.+ .......+.|.|.++
T Consensus 105 ~C~v~~~~~~~~~~~~L~V~~p 126 (126)
T 1eaj_A 105 QCKVKKAPGVANKKIHLVVLVK 126 (126)
T ss_dssp EEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEEcCCccCCcEEEEEEEcC
Confidence 999954 334466777887653
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-11 Score=71.56 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=53.7
Q ss_pred CceEEecCC----CcEEEEEecCC------eeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL------HILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~------~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ ..|.|+|.+.. .++...+ ......+|+.+......++.+|.|.+++.+|+|.|.|.+.+
T Consensus 14 L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~ 93 (109)
T 2oyp_A 14 LPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQF 93 (109)
T ss_dssp ECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECC
T ss_pred EEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEEEEEEEc
Confidence 679988764 34999985421 2222221 12234678887654334578899999999999999999954
Q ss_pred -CCCeeEEEEEEEEc
Q psy3125 69 -EPKMNMAIMLNVDD 82 (163)
Q Consensus 69 -~~~~~~~~~l~V~~ 82 (163)
.......+.|.|.+
T Consensus 94 ~~~~~~~~~~l~V~V 108 (109)
T 2oyp_A 94 PGLMNDKKLELKLDI 108 (109)
T ss_dssp SSTTCCEEEEEEEEE
T ss_pred CCcccceEEEEEEEe
Confidence 33344566666653
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=70.74 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=49.8
Q ss_pred CceEEecCC----CcEEEEEecCCeeEEecceEecCCCeEEEecc----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| +.|.|+| ++.... .. ....|+.+... ......+|.|.+++.+|+|.|+|.+ +..+.
T Consensus 24 L~C~~~g~p~~~~p~v~W~k--~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 97 (108)
T 3cx2_A 24 FSARVAGASLLKPPVVKWFK--GKWVDL-SS---KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF 97 (108)
T ss_dssp EEEEEECC-CCSCCEEEEEE--TTTEEG-GG---GCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred EEEEECCCccCCCcEEEEcc--CCcccc-cc---cCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCc
Confidence 689999876 6899998 322111 10 11235554321 1113678999999999999999999 44666
Q ss_pred eeEEEEEEEE
Q psy3125 72 MNMAIMLNVD 81 (163)
Q Consensus 72 ~~~~~~l~V~ 81 (163)
.+..+.|.|.
T Consensus 98 ~~~~~~L~V~ 107 (108)
T 3cx2_A 98 DCSNFNLTVH 107 (108)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 7778888875
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=71.57 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=45.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. ...+ ... ....+|.|.+++.+|+|.|+|.+.+ .+.....+.|
T Consensus 31 l~C~~~g~p~p~v~W~~--~g~~~~-------~~~~-~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 96 (99)
T 2yr3_A 31 LQCSVRGTPVPRITWLL--NGQPIQ-------YARS-TCE----AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96 (99)
T ss_dssp EECEEEEESCCCCEEEE--SSSBCS-------SCCC-EEE----TTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCE
T ss_pred EEEEEeeeCCCeEEEEE--CCEECc-------ccce-Eee----CCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence 679999999 9999998 222221 1111 111 2467899999999999999999944 4555555555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 97 ~V 98 (99)
T 2yr3_A 97 TV 98 (99)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-11 Score=70.51 Aligned_cols=69 Identities=19% Similarity=0.396 Sum_probs=49.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+. .| +.|.|+| ++.. +..+.|+.+.. .....+|.|.+++.+|+|.|+|.+.+ ....+.|.
T Consensus 31 L~C~~~-~p~~~v~W~k--~g~~-------~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~~---~~~~~~l~ 95 (102)
T 2eo1_A 31 LSCEVA-QAQTEVTWYK--DGKK-------LSSSSKVRVEA--VGCTRRLVVQQAGQAEAGEYSCEAGG---QQLSFRLQ 95 (102)
T ss_dssp ECCBCS-CSSSCCEEEE--TTEE-------CCCCSSEEEEE--ETTEEEEEETTCCTTTCSCEEEEETT---EECCEEEE
T ss_pred EEEEec-CCCCceEEEE--CCEE-------CCCCCCEEEEE--cCCEEEEEECCCCcccCEEEEEEcCC---CcEEEEEE
Confidence 579998 66 9999998 3322 23345777664 23467899999999999999999943 33456777
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|.+++
T Consensus 96 V~~p~ 100 (102)
T 2eo1_A 96 VAGQC 100 (102)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 77653
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-11 Score=72.71 Aligned_cols=82 Identities=22% Similarity=0.418 Sum_probs=53.9
Q ss_pred CceEEecC-C-CcEEEEEecCC------eeEEec-c-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL------HILTTN-I-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~------~~~~~~-~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+... . ..|.|+|.... .++... . ......+|+.+......++++|.|.+++.+|+|.|.|.+.+.+
T Consensus 17 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~ 96 (116)
T 2or8_A 17 LPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPG 96 (116)
T ss_dssp ECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSS
T ss_pred EEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCC
Confidence 67998763 3 78999996421 223221 1 1133567888764334567889999999999999999996543
Q ss_pred -Ce--eEEEEEEEEc
Q psy3125 71 -KM--NMAIMLNVDD 82 (163)
Q Consensus 71 -~~--~~~~~l~V~~ 82 (163)
.. ...+.|.|..
T Consensus 97 ~~~~~~~~~~l~V~p 111 (116)
T 2or8_A 97 WFNDQKVTFSLQVKP 111 (116)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred cccccEEEEEEEECC
Confidence 22 4455555544
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-11 Score=70.59 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=61.0
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 91 (103)
T 3qp3_A 14 RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN--TSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS 91 (103)
T ss_dssp CCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred CCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE--CCCEEEEEEcCCCcccCEEEEEEEEeCCCcEE
Confidence 3455677888889999963 45568889887643 22221 123557999999999999999999 9899999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.|+
T Consensus 92 ~~~~l~V~~~ 101 (103)
T 3qp3_A 92 DYATLDVTGG 101 (103)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEECC
Confidence 9999999875
|
| >3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-11 Score=73.56 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=56.4
Q ss_pred CceEEecCC--CcEEEEEecCC---e-eEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---H-ILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK 71 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~-~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~ 71 (163)
|.|.+.+.. ..|.|+|...+ . ++..... .....+||.+..+...+.++|.|.+++.+|+|.|.|.+.+ .+.
T Consensus 21 L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 100 (129)
T 3rrq_A 21 FTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPK 100 (129)
T ss_dssp EEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGG
T ss_pred EEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCC
Confidence 579998764 67999986432 1 2222211 1112479998865456789999999999999999999943 333
Q ss_pred e----eEEEEEEEEcCC
Q psy3125 72 M----NMAIMLNVDDRG 84 (163)
Q Consensus 72 ~----~~~~~l~V~~~~ 84 (163)
. +..+.|.|.+.+
T Consensus 101 ~~~~~s~~~~L~V~~~~ 117 (129)
T 3rrq_A 101 LQIKESLRAELRVTERR 117 (129)
T ss_dssp CEEEECCCEEEEEECCC
T ss_pred ceeeEeceEEEEEecCc
Confidence 2 456788888763
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-10 Score=68.42 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCceEeeCCCeEEEecCC--CCc---eeEEEEeCC---------CeEEEec----CCCCceEEEEecccCcCCCeeEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLT---TNIYTYTGD---------ARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~---~~~~~~~~~---------~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
+....+..|..+.+.|.. .+. +.+.|++++ .++.+.. ........|.|.+++.+|+|.|+|.
T Consensus 11 p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 90 (108)
T 3cx2_A 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCE 90 (108)
T ss_dssp CCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEE
T ss_pred CCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEE
Confidence 345567788889999863 333 678898764 2333221 1112356799999999999999999
Q ss_pred c-CCCCCccEEEEEEEe
Q psy3125 146 V-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~ 161 (163)
| |..|..+..+.|.|.
T Consensus 91 a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 91 VSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp EECSSCEEEEEEEEEEE
T ss_pred EecCCCceEEEEEEEEe
Confidence 9 999999999999986
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=70.68 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=53.0
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEe--cce--Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCe
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTT--NIY--TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM 72 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~--~~~--~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~ 72 (163)
|+|.+ .+.+ +.|.|+|..+..+... +.. ... ..+|+.+.. .+++|.|.+++.+|+|.|.|.+.+....
T Consensus 23 L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~----~~~sL~I~~v~~~DsG~Y~C~v~~~~~~ 98 (110)
T 2ptt_A 23 LKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE----NNGALHISNVRKEDKGTYYMRVLRETEN 98 (110)
T ss_dssp ECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT----TTCCEEESSCCGGGCEEEEEEEESSSBC
T ss_pred EeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC----CCccEEECCCCcccCeEEEEEEEcCCCc
Confidence 57988 5666 8999999333323321 111 111 125777652 4678999999999999999999655445
Q ss_pred eEEEEEEEEcC
Q psy3125 73 NMAIMLNVDDR 83 (163)
Q Consensus 73 ~~~~~l~V~~~ 83 (163)
...+.|.|.++
T Consensus 99 ~~~~~L~V~dp 109 (110)
T 2ptt_A 99 ELKITLEVFDP 109 (110)
T ss_dssp CEEEEEEEECC
T ss_pred EEEEEEEEEcc
Confidence 56778888764
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=76.81 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=55.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....++.+... .....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 137 l~C~~~g~p~p~v~W~~--~~~~-------~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 206 (212)
T 2r15_A 137 LTCNVWGDPPPEVSWLK--NEKA-------LAQTDHCNLKFE-AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206 (212)
T ss_dssp EEEEEECSSCCEEEEEE--TTEE-------ECCCSSEEEEEE-TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEcCCCCceEEEEE--CCeE-------CccCCCEEEEEc-CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEE
Confidence 579999999 9999998 3322 234556666653 234678999999999999999999 556666777778
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|..+
T Consensus 207 ~V~~P 211 (212)
T 2r15_A 207 SVFIP 211 (212)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 87754
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=72.39 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCceEeeCCCeEEEecCC-----CCceeEEEEeC---------CCeEEEecC----CCCceEEEEecccCcCCCeeEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD-----LLTTNIYTYTG---------DARFSVIHP----QNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~---------~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+....+..|..+.+.|.. .+.+.+.|+++ +.++.+... .......|+|.++++.|+|.|+|
T Consensus 13 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~C 92 (126)
T 2dav_A 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC 92 (126)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred cCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEE
Confidence 3456678889999999852 25689999986 245555321 11235789999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
+| |..+..+..+.|.|..
T Consensus 93 evsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 93 EVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEECSSCEEEECCEEEEEC
T ss_pred EEEeCCCcEEEEEEEEEEe
Confidence 99 8889999999999976
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=71.57 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=54.5
Q ss_pred CceEEecCC----CcEEEEEecCCe-eEEe-cceEe------cCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH-ILTT-NIYTY------TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~-~~~~-~~~~~------~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.+ ..|.|+|.+... +... ..... ...+|+.+.... ..++.+|.|.+++.+|+|.|+|.+.
T Consensus 26 L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 105 (139)
T 1pko_A 26 LPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 105 (139)
T ss_dssp EEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHCEEEEEEEE
Confidence 689998653 689999965322 2211 11111 124688876531 2357899999999999999999995
Q ss_pred C-CCCeeEEEEEEEEcC
Q psy3125 68 T-EPKMNMAIMLNVDDR 83 (163)
Q Consensus 68 ~-~~~~~~~~~l~V~~~ 83 (163)
+ .+.....+.|.|..+
T Consensus 106 ~~~~~~~~~~~L~V~~P 122 (139)
T 1pko_A 106 DHSYQEEAAVELKVEDP 122 (139)
T ss_dssp ETTEEEEEEEEEEEECT
T ss_pred cCCCceEEEEEEEEecC
Confidence 4 334566778888855
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-10 Score=74.25 Aligned_cols=75 Identities=24% Similarity=0.420 Sum_probs=55.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+.| +.+.|+|.+++..+... ..++|+.+.. .....+|.|.+++ .+|+|.|+|.+ +..+.....+.
T Consensus 112 l~C~~~g~p~p~i~W~~~~~g~~~~~~----~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 185 (190)
T 2wv3_A 112 MYCKSVGYPHPEWMWRKKENGVFEEIS----NSSGRFFIIN--KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTV 185 (190)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEECC----CTTSCEEEEE--CSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEeCccCCCceEEEEcCCCceeeee----cCCCeEEEec--CCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEE
Confidence 579999999 99999986444443211 2456777765 3346789999999 79999999999 44566667777
Q ss_pred EEEE
Q psy3125 78 LNVD 81 (163)
Q Consensus 78 l~V~ 81 (163)
|.|.
T Consensus 186 l~V~ 189 (190)
T 2wv3_A 186 LRVR 189 (190)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-11 Score=73.22 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=51.2
Q ss_pred CceEEecCC----CcEEEEEecCCe---eE-Ee-cce-Ee---cCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH---IL-TT-NIY-TY---TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~---~~-~~-~~~-~~---~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|+|.+.+.+ ..|.|+|.+... .+ .. ... .. ...+|+.+.... ..++++|.|.+++.+|+|.|.|++
T Consensus 20 L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v 99 (123)
T 4gjt_B 20 LPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRV 99 (123)
T ss_dssp ECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEE
T ss_pred EEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEE
Confidence 689998765 458899854221 11 11 110 00 013566665432 245789999999999999999999
Q ss_pred eC--CCCeeEEEEEEEEcC
Q psy3125 67 NT--EPKMNMAIMLNVDDR 83 (163)
Q Consensus 67 ~~--~~~~~~~~~l~V~~~ 83 (163)
.+ .+.....+.|.|.+-
T Consensus 100 ~t~~~g~~~~~~~L~VlE~ 118 (123)
T 4gjt_B 100 STFPAGSFQARLRLRVLEH 118 (123)
T ss_dssp EESSSCEEEEEEEEEC---
T ss_pred EECCCCeEEeEEEEEEEEC
Confidence 64 345566777887754
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=71.42 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~ 90 (114)
T 2cqv_A 13 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQ 90 (114)
T ss_dssp CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE--CSSEEEEEETTCCTTTCEEEEEEEECSSCEEE
T ss_pred CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE--cCCEEEEEECCCChhcCEEEEEEEEECCCcEE
Confidence 345567788888999996 345578889987653 33332 133567999999999999999999 8889988
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.++
T Consensus 91 ~~~~l~V~~~ 100 (114)
T 2cqv_A 91 AQVNLTVVDK 100 (114)
T ss_dssp CCEEEEEECS
T ss_pred EEEEEEEECC
Confidence 8999998753
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=69.26 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=50.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+ +.| +.|.|+| +... +....|+.+.. .....+|.|.+++.+|+|.|+|.+ +.....+.|.
T Consensus 28 l~C~~-~~p~~~v~W~k--~~~~-------l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~ 92 (103)
T 2dku_A 28 FTCKT-EHPAATVTWRK--GLLE-------LRASGKHQPSQ--EGLTLRLTISALEKADSDTYTCDI---GQAQSRAQLL 92 (103)
T ss_dssp EEEEC-SSCCSCCEEEE--SSCB-------CCSSSSEEEEE--ETTEEEEEEESCCTTTCSEEEEEC---SSCBCCEEEE
T ss_pred EEEEe-CCCCCeEEEEe--CCEE-------CCCCCeEEEEe--CCCEEEEEECCCCcccCEEEEEEe---CCceEEEEEE
Confidence 57995 677 9999998 2222 22345777764 235678999999999999999994 3445567788
Q ss_pred EEcCC
Q psy3125 80 VDDRG 84 (163)
Q Consensus 80 V~~~~ 84 (163)
|...+
T Consensus 93 V~~~p 97 (103)
T 2dku_A 93 VQGRR 97 (103)
T ss_dssp EECSC
T ss_pred EeCcc
Confidence 88764
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=69.91 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=47.6
Q ss_pred CceEEecCCCcEEEEEecCC-e--eE-EecceEecCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLGRPVSWMRKRDL-H--IL-TTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~-~--~~-~~~~~~~~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.++.|.|+|.... . .+ ..... ....+|+.+.... ..++++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n 92 (113)
T 1h5b_A 21 LRCNFTTTMRSVQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEA 92 (113)
T ss_dssp EEEEESSCCSEEEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCceEEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEec
Confidence 68999876678999986532 1 12 11111 1235788887543 45688999999999999999999954
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=68.27 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=60.2
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC-----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~ 155 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+..
T Consensus 12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (100)
T 2kdg_A 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91 (100)
T ss_dssp CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence 445667788889999974 34567889987654322111 0122357999999999999999999 888999999
Q ss_pred EEEEEecC
Q psy3125 156 IMLNVDGK 163 (163)
Q Consensus 156 ~~L~V~~~ 163 (163)
+.|.|..|
T Consensus 92 ~~l~V~~~ 99 (100)
T 2kdg_A 92 VQLDVLAK 99 (100)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 99999875
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-11 Score=70.93 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+.... ...++.... +..+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 28 l~C~~~g~p~p~v~W~~--~~~~~~~~~----~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 97 (100)
T 3caf_A 28 FRCPAGGNPMPTMRWLK--NGKEFKQEH----RIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97 (100)
T ss_dssp EECCEEEESCCEEEEEE--TTEECCGGG----STTCCEEEG----GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEccccCCCEEEEEE--CCEEccccc----ccccEEEec----CeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEE
Confidence 579999999 9999998 332222110 011222222 2457999999999999999999 445555666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 98 ~V 99 (100)
T 3caf_A 98 DV 99 (100)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ... | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=70.75 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=53.7
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---C
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---K 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~ 71 (163)
|.|.+.+.+ +.|.|+|...+ . ++....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+.. .
T Consensus 21 L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~ 98 (120)
T 1mqk_L 21 ITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPEDFGSYYCQHHYGTPPLT 98 (120)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSSCC
T ss_pred EEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec--cCCEEEEEECCCCHHHCEEEEEEEEeCCCceE
Confidence 689999988 89999996422 2 222211111 1257888764 3468899999999999999999995432 2
Q ss_pred eeEEEEEEEEcC
Q psy3125 72 MNMAIMLNVDDR 83 (163)
Q Consensus 72 ~~~~~~l~V~~~ 83 (163)
....+.|.|...
T Consensus 99 fg~gt~L~V~~~ 110 (120)
T 1mqk_L 99 FGGGTKLEIKRE 110 (120)
T ss_dssp BCCCEEEEEC--
T ss_pred ECCCeEEEEecC
Confidence 334556666544
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=89.55 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=90.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC---CCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT---EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~---~~~~~~~~ 76 (163)
|.|.+.|.| +.|.|.|.+.+... . ...++.+... ..+++.|.+..+...|.|.|.|.... ........
T Consensus 96 v~c~~~g~P~p~i~W~k~g~~~~~-~------~~~~~~i~~~-~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~ 167 (731)
T 2v5y_A 96 VYVKVNNGPLGNPIWNISGDPTRT-W------NRAELAISTF-WPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPH 167 (731)
T ss_dssp EEEEETTCCCCSEEEEECCCCCSS-C------EEEEEEECCC-TTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCE
T ss_pred EEEecCCCCccceeEEEeCCcCCc-e------eEEEEEEeec-CCCceEEEEEEEecCCceEEEEeeEEeeecccccccc
Confidence 469999999 99999984332100 0 0112222210 13456677777778888888875421 00000000
Q ss_pred EEEEEcCCCceEeeCCCeEEEecCC--CCceeEE-EE--eCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 77 MLNVDDRGRGARLSAGPLLNFAFPD--LLTTNIY-TY--TGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 77 ~l~V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~--~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.+ .+....+..|..+.+.|.. .+.+.+. |+ .++..+.... ........|.|.++++.|+|.|+|.|
T Consensus 168 ~~----~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~ 243 (731)
T 2v5y_A 168 FL----RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243 (731)
T ss_dssp EC----CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEE
T ss_pred cc----cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEE
Confidence 01 1234667788899999963 3344555 66 4444332221 11123468999999999999999999
Q ss_pred CCCCC-ccEEEEEEEec
Q psy3125 147 NTEPK-MNMAIMLNVDG 162 (163)
Q Consensus 147 ~~~~~-~~~~~~L~V~~ 162 (163)
|..|. .+..+.|.|..
T Consensus 244 n~~G~~~s~~~~l~V~~ 260 (731)
T 2v5y_A 244 TEGGVGISNYAELVVKE 260 (731)
T ss_dssp ETTEEEECCCEEEEEEC
T ss_pred CCCCCcceeeEEEEEec
Confidence 88786 77778887764
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=69.33 Aligned_cols=70 Identities=9% Similarity=0.164 Sum_probs=51.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCC----------eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDA----------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~----------r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+ .+.+.|+| ++..+. .+. |+.+.. +....+|.|.+++.+|+|.|+|....
T Consensus 28 f~C~vs~-~p~v~W~k--nG~~l~-------~~~~~~~~~~~~~r~~i~~--~g~~~~L~I~~v~~~D~G~Y~~~~~~-- 93 (112)
T 2e6q_A 28 FSLDLST-IIQGTWFL--NGEELK-------SNEPEGQVEPGALRYRIEQ--KGLQHRLILHAVKHQDSGALVGFSCP-- 93 (112)
T ss_dssp EEEEESS-CCCCEEEE--SSCBCC-------SSCCCTTSCTTSCEEEECC--BTTEEEEEEESCCSTTCSEEEEEEET--
T ss_pred EEEEECC-CCeEEEEE--CCEECc-------cCcccccccccccEEEEEe--CCcEEEEEECCCCHHHCccEEEEEEC--
Confidence 6899998 78899998 333332 233 888775 33577899999999999999774422
Q ss_pred CeeEEEEEEEEcCC
Q psy3125 71 KMNMAIMLNVDDRG 84 (163)
Q Consensus 71 ~~~~~~~l~V~~~~ 84 (163)
.....+.|.|..++
T Consensus 94 ~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 94 GVQDSAALTIQESS 107 (112)
T ss_dssp TEEEEEEEEEECSS
T ss_pred CeeEEEEEEEeCCC
Confidence 24567789998774
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=69.01 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEcCCCceEeeCCCeEEEecCC--C-CceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--L-LTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
|..++....+..|..+.+.|.. . +.+.+.|++++. ++.+.. ......|.|.+++.+|+|.|+|.| |..
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY--EDGVAILYVKDITKLDDGTYRCKVVNDY 81 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE--cCCeEEEEEecCChhhCeEEEEEEECCC
Confidence 3455566778889999999963 2 567889988754 333322 123557999999999999999999 999
Q ss_pred CCccEEEEEEEec
Q psy3125 150 PKMNMAIMLNVDG 162 (163)
Q Consensus 150 ~~~~~~~~L~V~~ 162 (163)
|..+..+.|.|.+
T Consensus 82 g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 82 GEDSSYAELFVKG 94 (97)
T ss_dssp CEEEEEEEEEETT
T ss_pred CeEeEEEEEEEEe
Confidence 9999999999875
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=68.15 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=47.6
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ +.|.|+|.... ..+....... ...+|+.+.. ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus 21 L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 21 INCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPEDFAMYICQQHNE 93 (108)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred EEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 689999998 99999996432 2222111111 1246888764 346789999999999999999999553
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=68.37 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+..+.
T Consensus 14 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 93 (100)
T 2edj_A 14 GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAV 93 (100)
T ss_dssp CCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred CcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence 3445677788999999963 445678999887654311100 012235999999999999999999 88899999999
Q ss_pred EEEecC
Q psy3125 158 LNVDGK 163 (163)
Q Consensus 158 L~V~~~ 163 (163)
|.|..+
T Consensus 94 l~V~~~ 99 (100)
T 2edj_A 94 LDVTES 99 (100)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999764
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=71.99 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=52.7
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEe--cceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTT--NIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EP 70 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~--~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~ 70 (163)
|+|.+.+. + ..|.|+|.+. .+..+ .... +. ..+|+.+.. +.+|.|.+++.+|+|.|+|++.+ .+
T Consensus 23 L~C~~~~~~~~~~~v~W~k~~~-~i~~~~~~~~~~~~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~v~~~~~g 96 (117)
T 3q0h_A 23 LQCHLSSTTAQVTQVNWEQQDQ-LLAICNADLGWHISPSFKDRVAPGP-----GLGLTLQSLTVNDTGEYFCIYHTYPDG 96 (117)
T ss_dssp ECEEEESCCCEEEEEEEEETTE-EEEEEETTTEEECCGGGTTTEEECS-----TTCEEECSCCGGGCEEEEEEEEEETTC
T ss_pred EEEEecCCCCCEEEEEEEeCCE-EEEEEECCCCceeCccccCcEEeCC-----ceEEEEeeCChhhCEEEEEEEEECCCC
Confidence 68999983 3 6899998432 22221 1111 11 145777532 56799999999999999999843 45
Q ss_pred CeeEEEEEEEEcCC
Q psy3125 71 KMNMAIMLNVDDRG 84 (163)
Q Consensus 71 ~~~~~~~l~V~~~~ 84 (163)
.....+.|.|..++
T Consensus 97 ~~~~~~~L~V~~pp 110 (117)
T 3q0h_A 97 TYTGRIFLEVLESS 110 (117)
T ss_dssp CEEEEEEEEEECC-
T ss_pred CeEEEEEEEEEccC
Confidence 66778899999875
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-10 Score=69.35 Aligned_cols=83 Identities=16% Similarity=0.291 Sum_probs=52.6
Q ss_pred CceEEe-cCC-Cc----EEEEEecCCe-e-E-Eecc-eEecCCCeEEEeccCC---CCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVM-GLG-RP----VSWMRKRDLH-I-L-TTNI-YTYTGDARFSVIHPQN---SDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~-~~~-~~----v~W~k~~~~~-~-~-~~~~-~~~~~~~r~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+. +.+ +. |.|+|.+... + + ..+. ..+...+|+.+..... .++.+|.|.+++.+|+|.|+|.+.
T Consensus 20 L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 99 (118)
T 3udw_C 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99 (118)
T ss_dssp ECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeEEEEEEE
Confidence 689995 444 43 9999853221 1 1 1111 1122356777765321 127889999999999999999995
Q ss_pred C--CCCeeEEEEEEEEcC
Q psy3125 68 T--EPKMNMAIMLNVDDR 83 (163)
Q Consensus 68 ~--~~~~~~~~~l~V~~~ 83 (163)
+ .+.....+.|.|.++
T Consensus 100 ~~~~~~~~~~~~L~V~~~ 117 (118)
T 3udw_C 100 TFPQGSRSVDIWLRVLAK 117 (118)
T ss_dssp EETTEEEEEEEEEEEEC-
T ss_pred ECCCCCccceEEEEEEeC
Confidence 4 345567778888765
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=70.17 Aligned_cols=69 Identities=20% Similarity=0.415 Sum_probs=50.1
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+. +.|.|+|. +. . +..+.|+.+.. .....+|.|.+++.+|+|.|+|.+.+ ....+.|.|
T Consensus 28 l~C~~~~~-p~v~W~k~-~~-~-------~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V 92 (108)
T 2dm7_A 28 LQCELSKV-APVEWKKG-PE-T-------LRDGGRYSLKQ--DGTRCELQIHDLSVADAGEYSCMCGQ---ERTSATLTV 92 (108)
T ss_dssp EEEEBSSS-CCCEEESS-SS-B-------CCSSSSCEEEE--ETTEEEEEESSCCTTTCSEEEEEETT---EEEEEECEE
T ss_pred EEEEeCCC-CeeEEEEC-CE-E-------CCCCCCEEEEe--cCCEEEEEECCCCcccCEEEEEEEcC---CEEEEEEEE
Confidence 57988765 78999972 22 1 22456777765 23577899999999999999999933 456677888
Q ss_pred EcCC
Q psy3125 81 DDRG 84 (163)
Q Consensus 81 ~~~~ 84 (163)
..++
T Consensus 93 ~~~p 96 (108)
T 2dm7_A 93 RALP 96 (108)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7754
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-10 Score=65.96 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCC--CeE----EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGD--ARF----SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
+....+..|..+.+.|. ..+.+.+.|++++ ..+ .+.. ......|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA--KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA 86 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEE--ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEE
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEe--cCCEEEEEECCCChhcCEEEEEEEEcCCCeEEE
Confidence 34456777888888885 4556788999888 432 1111 123567999999999999999999 99999999
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
.+.|.|+
T Consensus 87 ~~~l~V~ 93 (93)
T 1wit_A 87 IFEVIVQ 93 (93)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999884
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=69.75 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=56.6
Q ss_pred CCceEeeCCCeEEEecCCCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFPDLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|...+.+.+.|++++. ++.+.. ......|.|.+++.+|+|.|+|.| |. ..+.++
T Consensus 14 ~~~~~v~~G~~v~l~C~v~p~p~v~W~k~g~~l~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a 89 (100)
T 2yuz_A 14 LTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQ--KGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPA 89 (100)
T ss_dssp CCCEEEETTSCCCEEEECSSCCCEEEEETTEECCCCSSEEEEE--CSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEE
T ss_pred CCceEEcCCCCEEEEEEeCCCCeEEEEECCEECCCCCcEEEEE--eCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEE
Confidence 3456677888888988765556788998764 333332 234567999999999999999999 65 678889
Q ss_pred EEEEec
Q psy3125 157 MLNVDG 162 (163)
Q Consensus 157 ~L~V~~ 162 (163)
.|.|..
T Consensus 90 ~L~V~~ 95 (100)
T 2yuz_A 90 KVHVIS 95 (100)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998875
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-10 Score=66.27 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=55.6
Q ss_pred CceEeeCCCeEEEecCC--CCceeEEEEeCCC--------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-C
Q psy3125 85 RGARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
....+..|..+.+.|.. .+...+.|++.+. |+.+... ......|.|.+++.+|+|.|+|.| +
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n 92 (108)
T 3m45_A 14 QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFT 92 (108)
T ss_dssp CCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE-SSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred CeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec-CCCcEEEEECCCChhHCeEEEEEEEc
Confidence 34567778888888853 2345677876654 3333221 124678999999999999999999 7
Q ss_pred CCCCccEEEEEEEec
Q psy3125 148 TEPKMNMAIMLNVDG 162 (163)
Q Consensus 148 ~~~~~~~~~~L~V~~ 162 (163)
.+..+..+.|.|.+
T Consensus 93 -~~~~~~~~~L~V~~ 106 (108)
T 3m45_A 93 -MPVKTSKAYLTVLG 106 (108)
T ss_dssp -SSCEEEEEEEEEEC
T ss_pred -CCCcEEEEEEEEEc
Confidence 88889999999975
|
| >2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-10 Score=70.65 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=56.8
Q ss_pred CceEEecCC--CcEEEEEecCC----eeEEecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-Ce
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL----HILTTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KM 72 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~----~~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~ 72 (163)
|+|.+.... ..+.|+|.... .++...+ ......+||.+..+...+.++|.|.+++.+|+|.|.|.+.... ..
T Consensus 22 L~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~ 101 (124)
T 2nms_A 22 VQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDL 101 (124)
T ss_dssp EEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred EEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCc
Confidence 579988654 46999996432 2222211 1111357888876545678999999999999999999995432 34
Q ss_pred eEEEEEEEEcCC
Q psy3125 73 NMAIMLNVDDRG 84 (163)
Q Consensus 73 ~~~~~l~V~~~~ 84 (163)
...+.|.|..++
T Consensus 102 ~~~v~L~V~~~~ 113 (124)
T 2nms_A 102 GVTVQVTIDPAP 113 (124)
T ss_dssp EEEEEEEEECCC
T ss_pred cEEEEEEEeCCC
Confidence 456778877664
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=76.23 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=53.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcc-cCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDY-AQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++.. +...+++.+.. .....+|.|.+ ++.+|+|.|+|.+ +..+..+..+.
T Consensus 124 l~C~~~g~p~p~i~W~~--~~~~-------~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 192 (197)
T 2j8h_A 124 IKIPFSGKPDPVITWQK--GQDL-------IDNNGHYQVIV--TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192 (197)
T ss_dssp EEEEEEEESCCEEEEEE--SSCE-------ECSSSSCEEEE--CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEecCCCcEEEEE--CCEE-------eecCCCEEEEE--cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence 579999999 9999998 3222 23456776654 23577899999 9999999999999 55566677777
Q ss_pred EEEEc
Q psy3125 78 LNVDD 82 (163)
Q Consensus 78 l~V~~ 82 (163)
|.|.+
T Consensus 193 l~V~d 197 (197)
T 2j8h_A 193 LDVAD 197 (197)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77753
|
| >1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-11 Score=74.23 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=54.0
Q ss_pred CceEEe-------cCC-CcEEEEEecCCe----eEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVM-------GLG-RPVSWMRKRDLH----ILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~-------~~~-~~v~W~k~~~~~----~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+. +.. ..|.|+|..... ++...+. .....+|+.+..+...++++|.|.+++.+|+|.|.|
T Consensus 26 L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 105 (132)
T 1nko_A 26 VRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFF 105 (132)
T ss_dssp ECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccCcccCeeEEE
Confidence 689998 334 889999964321 2222211 011247999876433567899999999999999999
Q ss_pred EeeCCC-Ce---eEEEEEEEEcCC
Q psy3125 65 QVNTEP-KM---NMAIMLNVDDRG 84 (163)
Q Consensus 65 ~~~~~~-~~---~~~~~l~V~~~~ 84 (163)
.+.... .. ...+.|.|.+.+
T Consensus 106 ~v~~~~~~~~~~~~~~~l~V~~~~ 129 (132)
T 1nko_A 106 RMEKGNIKWNYKYDQLSVNVTALT 129 (132)
T ss_dssp EEEETTEEEECTTSCEEEEEECCC
T ss_pred EEEcCCCcccccCCceEEEecccC
Confidence 995443 11 235667777654
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-11 Score=80.08 Aligned_cols=66 Identities=23% Similarity=0.411 Sum_probs=47.0
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+. | +.|.|+| ++..+. .+.|+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 136 l~C~v~g~~P~p~i~W~k--~g~~l~-------~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 202 (207)
T 3rbs_A 136 LKCKVANIKKETHIVWYK--DEREIS-------VDEKHDF----KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202 (207)
T ss_dssp EEEEEESCCTTCEEEEEE--TTEEEC-------CCCCCCC----SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCCEEEEEE--CCEECC-------CCCceEc----CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEE
Confidence 68999998 8 9999998 333332 2334321 123567999999999999999999 55556666655
Q ss_pred EE
Q psy3125 78 LN 79 (163)
Q Consensus 78 l~ 79 (163)
|.
T Consensus 203 L~ 204 (207)
T 3rbs_A 203 LV 204 (207)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-09 Score=80.89 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=84.7
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-Ce
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KM 72 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~ 72 (163)
|.|.+.+.. ..|.|+| ++..+..+ ......+++|... .+|.|..+..+|.|.|+|++.+.. ..
T Consensus 317 L~C~v~g~~P~~~~i~W~k--~g~~~~~~~~~~~~~~~~~gt~~~~-------s~L~i~~~~~~d~g~y~C~a~n~~~~~ 387 (512)
T 1zvo_C 317 FTCFVVGSDLKDAHLTWEV--AGKVPTGGVEEGLLERHSNGSQSQH-------SRLTLPRSLWNAGTSVTCTLNHPSLPP 387 (512)
T ss_pred EEEEEeceECCCeEEEEEE--CCEeccCceeccceecCCCCeEEEE-------EEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence 679999863 4899998 33222101 0111123344332 359999999999999999995432 11
Q ss_pred eEEEEEE-EEc----CCCceEee----CCCeEE-EecCCC----CceeEEEEeCCCeEEEec--------CCCCc----e
Q psy3125 73 NMAIMLN-VDD----RGRGARLS----AGPLLN-FAFPDL----LTTNIYTYTGDARFSVIH--------PQNSD----E 126 (163)
Q Consensus 73 ~~~~~l~-V~~----~~~~~~v~----~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~~----~ 126 (163)
. ...+. +.. .++.+.+. .+..+. +.|... ....+.|.+++..+.... ...+. .
T Consensus 388 ~-~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~ 466 (512)
T 1zvo_C 388 Q-RLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAW 466 (512)
T ss_pred C-ceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEE
Confidence 1 11221 111 11222222 355566 888632 224578988866442110 11111 2
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V~ 161 (163)
..|.|.....+|+|.|+|.| +... .......|+|.
T Consensus 467 s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 467 SVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred EEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 45888888888899999999 5543 34455556553
|
| >2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-11 Score=72.18 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=46.8
Q ss_pred CceEEecCC--CcEEEEEecCCe----eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLH----ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.... ..|.|+|..... ++..........+|+.+......+.++|.|.+++.+|+|.|.|.+...
T Consensus 16 L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 90 (110)
T 2q87_A 16 VQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTP 90 (110)
T ss_dssp EEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred EEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecC
Confidence 579987653 689999854321 222111100135788887543456889999999999999999999654
|
| >1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=68.98 Aligned_cols=80 Identities=13% Similarity=0.322 Sum_probs=53.2
Q ss_pred CceEEecC--C-CcEEEEEecCC----eeEEec-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL----HILTTN-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-- 70 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~----~~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-- 70 (163)
|+|.+... . ..+.|+|...+ .++... .......+||.+......+.++|.|.+++.+|+|.|.|.+...+
T Consensus 30 L~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~~~ 109 (122)
T 1hkf_A 30 VRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDN 109 (122)
T ss_dssp EEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTTTC
T ss_pred EEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCC
Confidence 57998754 2 68999996432 223222 22223457999865555678999999999999999999996533
Q ss_pred CeeEEEEEEE
Q psy3125 71 KMNMAIMLNV 80 (163)
Q Consensus 71 ~~~~~~~l~V 80 (163)
.....+.|.+
T Consensus 110 ~~~~~~~l~L 119 (122)
T 1hkf_A 110 SVSKSVRFYL 119 (122)
T ss_dssp CEEEEEEEEE
T ss_pred cccccEEEEE
Confidence 3344444443
|
| >2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ... | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-10 Score=67.54 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ +.|.|+|.... . ++....... ...+||.+.. ..+..+|.|.+++.+|+|.|.|.+.+
T Consensus 23 L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 94 (109)
T 2q20_A 23 ITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG--SGTDFTFTISSLQPEDIATYYCQQYD 94 (109)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--cCCEEEEEECCCChhhCEEEEEEEee
Confidence 689999888 89999996532 1 222111111 1256888764 34688999999999999999999954
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=70.08 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=54.8
Q ss_pred CceEEecC--C-CcEEEEEecC------CeeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRD------LHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~------~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|+|.+... . ..|.|+|... ..++...+. .....+||.+......++++|.|.+++.+|+|.|.|.+...
T Consensus 17 L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~ 96 (115)
T 2or7_A 17 LPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIP 96 (115)
T ss_dssp ECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCT
T ss_pred EEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECC
Confidence 57888753 3 7899998541 333332221 22346788876543446789999999999999999999653
Q ss_pred CC-eeEEEEEEEEcC
Q psy3125 70 PK-MNMAIMLNVDDR 83 (163)
Q Consensus 70 ~~-~~~~~~l~V~~~ 83 (163)
+. ....+.|.|...
T Consensus 97 ~~~~~~~v~L~V~~~ 111 (115)
T 2or7_A 97 GAFHFVDYMLEVKPE 111 (115)
T ss_dssp TSCEEEEEEEEEESC
T ss_pred CceeEEEEEEEEcCC
Confidence 32 355556666544
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-11 Score=74.76 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=51.9
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEeccCCCC--eEEEEEcccCcCCC-eeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSD--EWNMKIDYAQKRDA-GIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~L~i~~v~~~D~-G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+.| +. |.|+| +...+..+ .++|+.+......+ ..+|.|.+++.+|. |.|+|.+ |..+....
T Consensus 33 l~C~~~g~P~p~~i~W~~--~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~ 105 (122)
T 2cry_A 33 IKCFIRSTPPPDRIAWSW--KENVLESG-----TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE 105 (122)
T ss_dssp CCEEECCSSCCSEEEEES--SSCEECSE-----EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEE
T ss_pred EEEEEeecCCCcEeEEEE--CCEEccCC-----CCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEE
Confidence 689999999 77 99997 32222211 13567664211122 55899999999999 9999999 44566666
Q ss_pred EEEEEEEcC
Q psy3125 75 AIMLNVDDR 83 (163)
Q Consensus 75 ~~~l~V~~~ 83 (163)
.+.|.|.++
T Consensus 106 ~~~l~V~~~ 114 (122)
T 2cry_A 106 IIRLKEQGS 114 (122)
T ss_dssp EECCCCSCS
T ss_pred EEEEEECCC
Confidence 666766654
|
| >3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=68.64 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=56.6
Q ss_pred CceEEecCC--CcEEEEEecCC----eeEEec-c-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL----HILTTN-I-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK- 71 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~----~~~~~~-~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~- 71 (163)
|.|.+.... ..|.|+|+..+ .++... . ......+||.+..+...+.++|.|.+++.+|+|.|.|.+.....
T Consensus 29 L~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~ 108 (134)
T 3bik_B 29 FTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPK 108 (134)
T ss_dssp EEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSS
T ss_pred EEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCC
Confidence 579998654 78999997432 122211 1 12234689998754456789999999999999999999954221
Q ss_pred ----eeEEEEEEEEcC
Q psy3125 72 ----MNMAIMLNVDDR 83 (163)
Q Consensus 72 ----~~~~~~l~V~~~ 83 (163)
....+.|.|.+.
T Consensus 109 ~~~~~~~gt~L~V~~~ 124 (134)
T 3bik_B 109 AKIEESPGAELVVTER 124 (134)
T ss_dssp CEEEECCCEEEEEECC
T ss_pred ceEEEcCCEEEEEeCC
Confidence 234567777765
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=65.09 Aligned_cols=79 Identities=14% Similarity=0.291 Sum_probs=59.6
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+....+..|..+.+.|.. .+.+.+.|++++. ++.+.. ......|.|.+++.+|+|.|+|.| |..|..
T Consensus 11 ~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 88 (99)
T 3puc_A 11 TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE--DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV 88 (99)
T ss_dssp ECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred ecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE--eCCEEEEEECCCCcccCEEEEEEEEeCCCcE
Confidence 33445677888889999863 3446788988654 233222 123457999999999999999999 888999
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
+..+.|.|++
T Consensus 89 ~~~~~l~V~~ 98 (99)
T 3puc_A 89 SSSCKLTIKA 98 (99)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEEEe
Confidence 9999999976
|
| >2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.7e-10 Score=67.95 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=52.6
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~ 72 (163)
|.|.+.+.+ +.|.|+|.... ..+....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+... .
T Consensus 23 L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~f 100 (119)
T 2e27_L 23 ITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG--SGRDYSFSISNLEPEDAATYYCLQYDNFTWTF 100 (119)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEECGGGCCEE
T ss_pred EEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--cCCEEEEEECCCChHHCEEEEEEEccCCceEE
Confidence 689999988 99999996422 2222111111 1257888764 34688999999999999999999954221 2
Q ss_pred eEEEEEEEEc
Q psy3125 73 NMAIMLNVDD 82 (163)
Q Consensus 73 ~~~~~l~V~~ 82 (163)
...+.|.|..
T Consensus 101 g~GT~l~v~~ 110 (119)
T 2e27_L 101 GGGTKLEIKR 110 (119)
T ss_dssp CCCEEEEEEC
T ss_pred CCCEEEEEeC
Confidence 2344455544
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=68.43 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=60.9
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
+...+....+..|..+.+.|.. .+.+.+.|++++. ++.+.. ......|.|.+++.+|+|.|+|.| |..|
T Consensus 17 i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 94 (106)
T 1nct_A 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT--TKYKSTFEISSVQASDEGNYSVVVENSEG 94 (106)
T ss_dssp EEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE--CSSEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred EEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE--CCCEEEEEECcCCchhCEEEEEEEEeCCC
Confidence 3445556778888889999863 4556788887654 333332 123568999999999999999999 8889
Q ss_pred CccEEEEEEEe
Q psy3125 151 KMNMAIMLNVD 161 (163)
Q Consensus 151 ~~~~~~~L~V~ 161 (163)
..+..+.|.|.
T Consensus 95 ~~~~~~~l~V~ 105 (106)
T 1nct_A 95 KQEAEFTLTIQ 105 (106)
T ss_dssp BCCEEEEEEEC
T ss_pred eEEEEEEEEEE
Confidence 99999999986
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=68.66 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC-CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
..+....+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+..+.
T Consensus 16 ~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 95 (99)
T 2yr3_A 16 SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAW 95 (99)
T ss_dssp ECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECC
T ss_pred ecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEE
Confidence 34456678889999999964 34567899988764421110 1123567999999999999999999 88899999988
Q ss_pred EEEe
Q psy3125 158 LNVD 161 (163)
Q Consensus 158 L~V~ 161 (163)
|.|+
T Consensus 96 l~V~ 99 (99)
T 2yr3_A 96 VTVH 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8874
|
| >2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L | Back alignment and structure |
|---|
Probab=99.08 E-value=7.8e-10 Score=70.85 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=53.7
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC--e
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK--M 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~ 72 (163)
|.|.+.+.+ +.|.|+|.... ..+........ ..+||.+.. ....++|.|.+++.+|+|.|.|.+.+... .
T Consensus 36 L~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~f 113 (146)
T 2yc1_B 36 LSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG--SGTDFTLTISSLEPEDFAIYYCQQYRYSPRTF 113 (146)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec--CCCEEEEEECCCCHHHCEEEEEEEecCCCCeE
Confidence 689999887 89999996532 22222211111 246888864 34688999999999999999999954322 2
Q ss_pred eEEEEEEEEcCC
Q psy3125 73 NMAIMLNVDDRG 84 (163)
Q Consensus 73 ~~~~~l~V~~~~ 84 (163)
...+.|.|..+.
T Consensus 114 g~GT~L~V~~~~ 125 (146)
T 2yc1_B 114 GQGTKVEIKRAA 125 (146)
T ss_dssp CCCEEEEEC---
T ss_pred CCCEEEEEeCCc
Confidence 344567776553
|
| >2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=71.87 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=81.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC----C
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE----P 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~----~ 70 (163)
|.|.+.+.. ..|.|+|+..+ ..+.. ........+||.+..+...+.++|.|.+++.+|+|.|.|.+... .
T Consensus 23 L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~ 102 (210)
T 2eys_A 23 LQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLG 102 (210)
T ss_dssp EEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSSTTC
T ss_pred EEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCCcc
Confidence 579998877 88999996532 22221 21111236799987655567899999999999999999999642 1
Q ss_pred C--eeEEEEEEEEcCC--Cce--EeeCC--CeEEEecCC--C-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCC
Q psy3125 71 K--MNMAIMLNVDDRG--RGA--RLSAG--PLLNFAFPD--L-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 139 (163)
Q Consensus 71 ~--~~~~~~l~V~~~~--~~~--~v~~~--~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~ 139 (163)
. ....+.|.|.... ..+ .+... ..+.+.|.. . +...+.+ ..+..... .....|.+..+...|.
T Consensus 103 ~~~fg~gt~L~V~~~~~~~~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~-~~~~~~~~-----t~~~~l~~~~~~~~~~ 176 (210)
T 2eys_A 103 RLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQ-SKDSDVYI-----TDKCVLDMRSMDFKSN 176 (210)
T ss_dssp CEEECCCEEEEEECCCSSCCCEEEEECCCSSSSCEEEEEESCCTTCCCCC-CSSTTEEE-----CCCEEEEETTTTEEEE
T ss_pred cceECCCEEEEEECCCCCCCCeEEecCCCCCCceEEEEcccccCCcEecc-ccCcceEc-----cCchhcchhccccccc
Confidence 1 1234567776531 122 22111 122334421 0 1111100 00000000 1223588888999999
Q ss_pred eeEEEEc-CC
Q psy3125 140 GIYECQV-NT 148 (163)
Q Consensus 140 G~Y~C~a-~~ 148 (163)
|.|.|.+ +.
T Consensus 177 ~~~~w~~~~~ 186 (210)
T 2eys_A 177 SAVAWSNKSD 186 (210)
T ss_dssp EEEEEECSTT
T ss_pred chhhccCCCc
Confidence 9999998 54
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=80.50 Aligned_cols=140 Identities=10% Similarity=0.099 Sum_probs=79.5
Q ss_pred CceEEecC---C--CcEEEEEecCCeeEEe-c-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-e
Q psy3125 1 MACTVMGL---G--RPVSWMRKRDLHILTT-N-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK-M 72 (163)
Q Consensus 1 l~C~~~~~---~--~~v~W~k~~~~~~~~~-~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-~ 72 (163)
|.|.+.+. | ..|.|+|.+ +.+... . ......+++|. ...+|.|.+++.+|+|.|+|++.+... .
T Consensus 188 L~C~~~g~~P~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~-------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 188 VTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTQPREEQFNSTFR-------SVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred EEEEEeccccCCCccEEEEEECC-ccccCcccCCCCcccCCcEE-------EEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 67999987 4 479999854 222110 0 00001122222 234699999999999999999965322 2
Q ss_pred eEEEEE----EEEcCCCceEe-------eCCCeEEEecCCC----CceeEEEEeCCCeEEEe------cCCC---CceEE
Q psy3125 73 NMAIML----NVDDRGRGARL-------SAGPLLNFAFPDL----LTTNIYTYTGDARFSVI------HPQN---SDEWN 128 (163)
Q Consensus 73 ~~~~~l----~V~~~~~~~~v-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~---~~~~~ 128 (163)
.....+ .+..++ .+.+ ..+..+.+.|... ....+.|++++..+... .... .....
T Consensus 260 ~~~~~v~~~~~~~~~P-~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~ 338 (376)
T 2aty_A 260 PIEKTISKTKGRPKAP-QLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK 338 (376)
T ss_pred ceEEEEcCCCCCCcCC-eEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence 221222 122222 2222 2355678888642 24578898887543110 0111 11345
Q ss_pred EEecccCcCCCeeEEEEc-CCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
|.|.....+|.|.|+|.| +..
T Consensus 339 L~i~~~~~~~~~~YtC~v~h~~ 360 (376)
T 2aty_A 339 LNVQKSNWEAGNTFTCSVLHEG 360 (376)
T ss_pred EEEcHHHhCCCCcEEEEEEeCC
Confidence 888888888999999999 543
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=66.56 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=44.6
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+. +.| +.|.|+|.+.... .. +.. .. +.+|.|.+++.+|+|.|+|.+.+ .+.....+.
T Consensus 30 l~C~~~~~~p~~~v~W~k~~~~~~---------~~-~~~-~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 93 (98)
T 1gl4_B 30 FICTAKSKSPAYTLVWTRLHNGKL---------PS-RAM-DF-----NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 93 (98)
T ss_dssp EEEEEEESSSCCEEEEEEGGGBCC---------CT-TEE-EE-----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEeCCCCCCCcEEEEEeCCCCCC---------Cc-eee-cC-----CCEEEEeCCChhhCEEEEEEecCCCCccccEEE
Confidence 579999 678 9999998422211 11 111 11 23699999999999999999944 455666666
Q ss_pred EEEE
Q psy3125 78 LNVD 81 (163)
Q Consensus 78 l~V~ 81 (163)
|.|.
T Consensus 94 l~V~ 97 (98)
T 1gl4_B 94 LHVQ 97 (98)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7664
|
| >1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N | Back alignment and structure |
|---|
Probab=99.07 E-value=7.8e-10 Score=67.72 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=46.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|......+. ..+..++||.+..+.....++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~g~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 20 INCVLRDASYALGSTCWYRKKSGEGNE---ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87 (113)
T ss_dssp EEEEECSCSSCCCCEEEEEEETTSCCC---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEECCCcCCCCEEEEEEeCCCCCce---EeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 689998764 689999964321110 01123578887654445689999999999999999999954
|
| >2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-10 Score=67.73 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=46.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.. +.|.|+|......+. ..+...+||.+..+.....++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (108)
T 2coq_A 20 INCVLRDTACALDSTNWYRTKLGSTKE---QTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR 87 (108)
T ss_dssp EEEEECCSSEEEEEEEEEEEETTCCCE---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEeEeCCCcCCCCEEEEEEcCCCCCcE---EEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence 689998763 789999964322110 01123578887654345689999999999999999999953
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=67.38 Aligned_cols=83 Identities=13% Similarity=0.370 Sum_probs=55.4
Q ss_pred CceEEec-C-C-CcEEEEEec-CC-----eeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMG-L-G-RPVSWMRKR-DL-----HILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~-~-~-~~v~W~k~~-~~-----~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|+|.+.. . . ..|.|+|.. .. .++...+ ......+|+.+..+...++++|.|.+++.+|+|.|.|.+...
T Consensus 16 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~ 95 (116)
T 3bia_X 16 LPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVP 95 (116)
T ss_dssp ECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcC
Confidence 5788873 2 3 569999965 32 2232221 223345688876544456889999999999999999999643
Q ss_pred C---CeeEEEEEEEEcC
Q psy3125 70 P---KMNMAIMLNVDDR 83 (163)
Q Consensus 70 ~---~~~~~~~l~V~~~ 83 (163)
+ .....+.|.|..+
T Consensus 96 ~~~~~~~~~v~L~V~~~ 112 (116)
T 3bia_X 96 GWFNDVKKNVRLELRRA 112 (116)
T ss_dssp SSSCCEEEEEEEEEECC
T ss_pred CcccceEEEEEEEEecC
Confidence 3 2345667777665
|
| >1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=66.43 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=47.0
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|...+ ..+........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 92 (107)
T 1i8k_A 21 IRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSEDVGDYYCLQSF 92 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc--cCCEEEEEECCCCHHHCEEEEEEEee
Confidence 689999887 89999996421 22221111111 256888764 34688999999999999999999954
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-10 Score=78.90 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred cCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCceEeeCCCeEEEecCCC-CceeEEEEeCC--C---------------
Q psy3125 54 AQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDL-LTTNIYTYTGD--A--------------- 114 (163)
Q Consensus 54 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~--~--------------- 114 (163)
.+++|.+.|.|++.+ .+.......+.|..++..+.+..|..+.+.|... ....+.|++.. .
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 82 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQ 82 (270)
T ss_dssp -------------------------CCCEEECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEE
T ss_pred chhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCcee
Confidence 467899999999943 3333334445666666677888999999999642 34577887621 1
Q ss_pred -------eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 -------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 -------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+.. ......+|.|.+++.+|+|.|+|.+
T Consensus 83 ~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~~ 120 (270)
T 3qib_D 83 QIDMTEKRFSAEC-PSNSPCSLEIQSSEAGDSALYLCAS 120 (270)
T ss_dssp ECHHHHHHEEEEC-CTTSCEEEEESSCCGGGCEEEEEEE
T ss_pred cCCccCCcEEEEe-CCCcEEEEEECCCCHhHCeEEEEEE
Confidence 444433 2344678999999999999999999
|
| >1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=67.80 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=46.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.... ..+....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 92 (108)
T 1qfw_M 21 LSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG--SATDFTLTISSVQAEDFADYHCGQTY 92 (108)
T ss_dssp EEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB--CSSEEEEEESSCCTTCCSEEEEEECS
T ss_pred EEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc--CCCEEEEEECCCChhhCEEEEEEEcc
Confidence 689999888 89999986432 2222111111 1246888754 34688999999999999999999954
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-10 Score=68.07 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=54.0
Q ss_pred CceEeeCCCeEEEecCCC--CceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 85 RGARLSAGPLLNFAFPDL--LTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
....+..|..+.+.|... +.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+..+.|.
T Consensus 18 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 97 (108)
T 3kvq_A 18 ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97 (108)
T ss_dssp CCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEE
T ss_pred CCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEE
Confidence 445677889999999743 4567899988764421110 0112346999999999999999999 8889999999999
Q ss_pred EecC
Q psy3125 160 VDGK 163 (163)
Q Consensus 160 V~~~ 163 (163)
|.++
T Consensus 98 V~~~ 101 (108)
T 3kvq_A 98 IEGA 101 (108)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 9863
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=71.94 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=48.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~ 75 (163)
|.|.+.+.| +.+.|+|.+.. +. .... ....+....... .....+|.|.+++.+|+|.|+|.+. ..+.....
T Consensus 28 L~C~~~g~p~~~~~i~W~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 103 (122)
T 3s35_X 28 LNCTARTELNVGIDFNWEYPSSK-HQ-HKKL--VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 103 (122)
T ss_dssp EEEEEEECTTCCCEEEEECSCTT-CC-HHHH--BCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEcCCCCcEEEEEECCCcc-cC-Ccee--eeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEE
Confidence 689999844 68899973221 10 0000 001111111000 0125679999999999999999994 45566778
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|.+++
T Consensus 104 ~~l~V~~~p 112 (122)
T 3s35_X 104 TFVRVHEKP 112 (122)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccC
Confidence 888888764
|
| >2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.1e-10 Score=68.30 Aligned_cols=65 Identities=20% Similarity=0.421 Sum_probs=46.5
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + +.|.|+|......+. ......+||.+..+.....++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~r~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 87 (111)
T 2ywz_A 20 IKCVLKDHSCGLSSTTWYRTQLGSTNE---KTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY 87 (111)
T ss_dssp EEEEEESCSSCCCEEEEEEEETTCCCC---EECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEeEECCCCCCCCEEEEEEeCCCCCce---EeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence 68999876 4 899999964322110 01123578887644345689999999999999999999954
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=66.94 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=57.0
Q ss_pred ceEeeCCCeEEEecCC----CCceeEEEEeCCCeEE-----------Eec-CCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 86 GARLSAGPLLNFAFPD----LLTTNIYTYTGDARFS-----------VIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
...+..|..+.+.|.. .+...+.|++++.... ... ........|.|.+++.+|+|.|+|.| |.
T Consensus 17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 96 (122)
T 3s35_X 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG 96 (122)
T ss_dssp CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence 4477789999999964 2335778988766221 000 00113457999999999999999999 88
Q ss_pred CCCccEEEEEEEecC
Q psy3125 149 EPKMNMAIMLNVDGK 163 (163)
Q Consensus 149 ~~~~~~~~~L~V~~~ 163 (163)
.|..+..+.|.|.++
T Consensus 97 ~g~~~~~~~l~V~~~ 111 (122)
T 3s35_X 97 LMTKKNSTFVRVHEK 111 (122)
T ss_dssp SCEEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEecc
Confidence 899999999998753
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=75.13 Aligned_cols=114 Identities=12% Similarity=0.121 Sum_probs=67.4
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCceEee--------CCC-eEEEecCCC---Cc--eeEEE
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGARLS--------AGP-LLNFAFPDL---LT--TNIYT 109 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~v~--------~~~-~~~~~~~~~---~~--~~~~~ 109 (163)
++.+|.|.+++.+|+|.|.|.+.+ .......+.|.|..++. +.+. .|. .+.+.|... +. ..+.|
T Consensus 252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~-V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW 330 (401)
T 3f8u_B 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPK-VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW 330 (401)
T ss_dssp EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE-EEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCe-EeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence 578999999999999999999954 33445567788887643 2222 343 567778531 22 57888
Q ss_pred E-eCC--Ce-EEE------e---cCCC---CceEEEEecccCcCCC-eeEEEEc-CCC-CCccEEEEEE
Q psy3125 110 Y-TGD--AR-FSV------I---HPQN---SDEWNMKIDYAQKRDA-GIYECQV-NTE-PKMNMAIMLN 159 (163)
Q Consensus 110 ~-~~~--~~-~~~------~---~~~~---~~~~~L~i~~v~~~D~-G~Y~C~a-~~~-~~~~~~~~L~ 159 (163)
. +++ .. ... . .... .....|.|...+.+|. +.|+|.| +.. ...++++.+.
T Consensus 331 ~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVt 399 (401)
T 3f8u_B 331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVT 399 (401)
T ss_dssp EEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred EecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence 4 543 11 111 1 0011 1134577777654444 5899999 443 2344444443
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=66.46 Aligned_cols=61 Identities=18% Similarity=0.393 Sum_probs=42.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-CC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-PK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~~-~~~~~~ 77 (163)
|.|.+.+.| +.+.|+| ++..+. .....+|.|.+++.+|+|.|+|.+.+. +. .+..+.
T Consensus 23 l~C~~~g~p~p~i~W~~--~~~~~~------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 82 (91)
T 3bfo_A 23 LQCVAVGSPIPHYQWFK--NELPLT------------------HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82 (91)
T ss_dssp EECEEECSSCCEEEEEE--TTEECT------------------TCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred EEEEeccCCCCEEEEEc--CCeeCC------------------cCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence 679999999 9999998 322211 112346999999999999999999543 32 234455
Q ss_pred EEEE
Q psy3125 78 LNVD 81 (163)
Q Consensus 78 l~V~ 81 (163)
|.|.
T Consensus 83 l~V~ 86 (91)
T 3bfo_A 83 IIID 86 (91)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6554
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-10 Score=68.00 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=58.7
Q ss_pred CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEE-----EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 85 RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFS-----VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
....+..|..+.+.|.. .+.+.+.|++++..+. +. .......|.|.+++.+|+|.|+|.| |..|..+..+
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 109 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVR--TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATI 109 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEE--ECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEE
T ss_pred CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEE--ECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEE
Confidence 44567778888888863 3456788988765332 21 1233566999999999999999999 9999999999
Q ss_pred EEEEecC
Q psy3125 157 MLNVDGK 163 (163)
Q Consensus 157 ~L~V~~~ 163 (163)
.|.|..+
T Consensus 110 ~l~V~~~ 116 (118)
T 2e7c_A 110 RIRVVEK 116 (118)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999764
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=65.97 Aligned_cols=64 Identities=20% Similarity=0.411 Sum_probs=42.2
Q ss_pred CceEEecCC-C-----cEEEEEecCCeeEEe-cceEe------cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-R-----PVSWMRKRDLHILTT-NIYTY------TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~-----~v~W~k~~~~~~~~~-~~~~~------~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.| + .|.|+|.+...++.. .+... ...+|+.+.. ++++|.|.+++.+|+|.|.|.+.
T Consensus 14 L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~sL~I~~v~~~D~G~Y~C~v~ 89 (110)
T 1ncn_A 14 LPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS----DSWTLRLHNLQIKDKGLYQCIIH 89 (110)
T ss_dssp EECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET----TTTEEEECSCCGGGCEEEEEEEE
T ss_pred EEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC----CCEEEEEcCCChHHCEEEEEEEE
Confidence 689988655 2 499998544323221 11111 1135666653 25789999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
+
T Consensus 90 ~ 90 (110)
T 1ncn_A 90 H 90 (110)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=66.33 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=59.2
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCe-------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. .......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 22 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 100 (116)
T 2kkq_A 22 PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ-DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100 (116)
T ss_dssp CCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEE-CTTCEEEEEEEEECGGGCEEEEEEEEETTEEEE
T ss_pred CCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEe-CCCCeEEEEECCCCcccCEEEEEEEEcCCCeEE
Confidence 445677888889999953 34567889887643 33222 1123457999999999999999999 8889999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|..+
T Consensus 101 ~~~~l~V~~~ 110 (116)
T 2kkq_A 101 CNTRLDVTAR 110 (116)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999753
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-10 Score=73.54 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=50.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| ++.. +....++.+... ....+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 123 l~C~~~g~p~~~v~W~~--~~~~-------~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 191 (194)
T 2a38_A 123 LQVRVTGIPTPVVKFYR--DGAE-------IQSSLDFQISQE--GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191 (194)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCCSSSEEEEEE--TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCeEEEEE--CCEE-------CCCCCcEEEEEc--CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEE
Confidence 579999999 9999998 3222 233556666542 34668999999999999999999 445556666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 192 ~V 193 (194)
T 2a38_A 192 LV 193 (194)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-10 Score=69.64 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=51.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-----CeeEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-----KMNMA 75 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-----~~~~~ 75 (163)
|.|.+.+. +.|.|+|+..+..+. ......+||.+.. +...++|.|.+++.+|+|.|.|.+.+.. .....
T Consensus 37 L~C~~~~~-~~v~W~r~~~g~~~~---~l~~~~~r~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~g 110 (133)
T 3khq_A 37 FHCYTNHS-GALTWFRKRGSQQPQ---ELVSEEGRIVQTQ--NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCG 110 (133)
T ss_dssp EEEEESSS-SCEEEEEECTTSCCE---ECCCTTTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEESSCC-------CCC
T ss_pred EEEEeCCC-CEEEEEEeCCCCCCE---EEEEeCCCEEEEc--CCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCC
Confidence 57999988 899999964321110 0011467888875 2457899999999999999999995432 13445
Q ss_pred EEEEEEcC
Q psy3125 76 IMLNVDDR 83 (163)
Q Consensus 76 ~~l~V~~~ 83 (163)
+.|.|...
T Consensus 111 t~L~V~~~ 118 (133)
T 3khq_A 111 TELLVLGF 118 (133)
T ss_dssp EEEEEC--
T ss_pred EEEEEEec
Confidence 66777654
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=61.05 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=53.2
Q ss_pred ceEeeCCCeEEEecCC-CCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEE
Q psy3125 86 GARLSAGPLLNFAFPD-LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 158 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L 158 (163)
.+.+..|..+.+.|.. .+.+.+.|++++..+ .+.. ......|.|.+++.+|+|.|+|.| ++.+..+.|
T Consensus 5 ~v~~~~G~~v~l~C~vs~p~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a---~n~~~~a~l 79 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSGPGGPVRWYKDGERLASQGRVQLEQ--AGARQVLRVQGARSGDAGEYLCDA---PQDSRIFLV 79 (84)
T ss_dssp CEEECTTSCEEEECCCSCCSTTCEEEETTEECCCCSSEEEEE--CSSCEEEEESSCSSTTCEEEEEEC---TTTCEEEEE
T ss_pred EEEEecCCCEEEEEEECCCCcEEEEEECCEEccccccEEEee--cCCeEEEEecCCCCcccEEEEEEE---CCEEEEEEE
Confidence 4567788999999963 345678999876533 3322 234567999999999999999998 335678888
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
.|+.
T Consensus 80 ~V~e 83 (84)
T 2lu7_A 80 SVEE 83 (84)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8864
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=63.09 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=55.3
Q ss_pred EEcCCCceEeeCCCeEEEecCC-CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCc
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD-LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM 152 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~ 152 (163)
+..++....+..|..+.+.|.. ...+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.|.+ .
T Consensus 8 ~~~~~~~~~v~~G~~v~l~C~v~~~~~~v~W~k~g~~i~~~~~~~i~~--~g~~~~L~I~~v~~~D~G~Y~C~a~n---~ 82 (93)
T 1waa_A 8 VEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIE--DGKKHILILHNCQLGMTGEVSFQAAN---T 82 (93)
T ss_dssp EEECCCCEEEETTSCEEEEEEESSSSCCCEEEETTEECCCBTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEETT---E
T ss_pred eeccCcceEEeCCCCEEEEEEECCCCCeEEEEECCEECcCCCCEEEEE--ECCEEEEEECCCChhhCEEEEEEECC---C
Confidence 3445556778889999999963 23457889987643 33322 12356799999999999999999922 3
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
..++.|.|++
T Consensus 83 ~~sa~L~V~~ 92 (93)
T 1waa_A 83 KSAANLKVKE 92 (93)
T ss_dssp EEEEEEEEEC
T ss_pred cEEEEEEEEc
Confidence 4678888875
|
| >2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=67.22 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=46.3
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. + ..|.|+|......+. ..+...+||.+..+.....++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~---~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 86 (121)
T 2i24_N 20 INCVVRDSRCVLSTGYWYRKPPGSRNE---ESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPE 86 (121)
T ss_dssp EEEEECSCCCCEEEEEEEEECTTCSCC---EEECSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEeEccCCCCCCCEEEEEEeCCCCCce---eeEecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEEEe
Confidence 68999876 3 689999965322111 1122457888765445578999999999999999999995
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=66.34 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=53.9
Q ss_pred ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 86 GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
...+..|..+.+.|... ..+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+..+.|.|.
T Consensus 18 ~~~v~~G~~v~l~C~~~g~pp~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 95 (95)
T 2ckn_A 18 SLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95 (95)
T ss_dssp CEEECTTSCEEEECCEESSCCEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eEEEcCCCeEEEEEECCCCCCceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEEC
Confidence 45667788899998632 12578898876533211110011346999999999999999999 888998888888873
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=65.54 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=57.8
Q ss_pred CceEeeCCCeEEEecCC--CCceeEEEEeCCCe-------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 85 RGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
....+..|..+.+.|.. .+.+.+.|++++.. +.+... ......|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~ 94 (110)
T 2dm2_A 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD-LDGTCSLHTTASTLDDDGNYTIMAANPQGRISC 94 (110)
T ss_dssp CCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC-TTCEEEEEESSCCTTTCSCCEEEEECTTCCEEE
T ss_pred cCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC-CCcEEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence 34567778888898863 34567889887543 333321 123457999999999999999999 88899999
Q ss_pred EEEEEEec
Q psy3125 155 AIMLNVDG 162 (163)
Q Consensus 155 ~~~L~V~~ 162 (163)
.+.|.|..
T Consensus 95 ~~~l~V~~ 102 (110)
T 2dm2_A 95 TGRLMVQA 102 (110)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEEC
Confidence 99998875
|
| >1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=66.49 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ +.|.|+|.... . ++....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 24 L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 95 (111)
T 1i3g_L 24 ITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG--SGTDFTLTISNVQSEDLADYFCQQYS 95 (111)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--CCCEEEEEECCCCHHHCEEEEEEEec
Confidence 689999887 89999996532 2 222221111 1246888764 34678999999999999999999954
|
| >2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=67.74 Aligned_cols=67 Identities=13% Similarity=0.323 Sum_probs=47.8
Q ss_pred CceEEecCC-CcEEEEEecCC---eeE-Eecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HIL-TTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~-~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|.... ..+ .... ......+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 20 IHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92 (112)
T ss_dssp ECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred EEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 689998877 88999996532 222 2111 0111257898875445668899999999999999999996
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=66.59 Aligned_cols=77 Identities=17% Similarity=0.057 Sum_probs=55.6
Q ss_pred CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 85 RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
....+..|..+.+.|.. .+...+.|++++...... ........|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 96 (98)
T 1gl4_B 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96 (98)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc-eeecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence 44577888999999963 345678898764321100 00011236999999999999999999 88899999999999
Q ss_pred ec
Q psy3125 161 DG 162 (163)
Q Consensus 161 ~~ 162 (163)
++
T Consensus 97 ~~ 98 (98)
T 1gl4_B 97 QV 98 (98)
T ss_dssp C-
T ss_pred eC
Confidence 75
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-10 Score=67.26 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++..+. ... .......|.|.+++.+|+|.|+|.| |..+..+
T Consensus 15 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 93 (110)
T 2dm3_A 15 APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV-RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNS 93 (110)
T ss_dssp CCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE-CTTSCEEEEESSCCGGGCSBBCEEEECSSCEEE
T ss_pred CCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE-ecCCeEEEEEeeCCcccCEEEEEEEECCCCEEE
Confidence 344566777888888886 34456788887765332 111 1123567999999999999999999 8889999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.++
T Consensus 94 ~~~~l~V~~~ 103 (110)
T 2dm3_A 94 FSLELVVAAK 103 (110)
T ss_dssp ECCEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999764
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-10 Score=64.93 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=57.9
Q ss_pred EEEEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc-c
Q psy3125 78 LNVDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-N 153 (163)
Q Consensus 78 l~V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~ 153 (163)
+.|...+....+..|..+.+.|.. .+.+.+.|++++..+. . .....|.|.+++.+|+|.|+|.| |..+.. +
T Consensus 4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~--~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s 78 (91)
T 3bfo_A 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT--H---ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78 (91)
T ss_dssp CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECT--T---CCSSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCC--c---CCCCeEEECCCCHHhCEEEEEEEEcCCCCEEe
Confidence 345556666778889999999963 4556888998765322 1 12346999999999999999999 777753 3
Q ss_pred EEEEEEEe
Q psy3125 154 MAIMLNVD 161 (163)
Q Consensus 154 ~~~~L~V~ 161 (163)
..+.|.|.
T Consensus 79 ~~~~l~V~ 86 (91)
T 3bfo_A 79 KKVEIIID 86 (91)
T ss_dssp CCEEEEEC
T ss_pred eeEEEEEe
Confidence 56777775
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=72.01 Aligned_cols=71 Identities=11% Similarity=0.310 Sum_probs=52.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc-CCCeeEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+.+.| +.+.|+| +... +....++.+.. .....+|.|.++.. +|+|.|+|.+. ..+.....+.
T Consensus 123 l~C~~~~~p~p~v~W~~--~~~~-------~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 191 (197)
T 3lcy_A 123 LHVMYIGRPVPAMTWFH--GQKL-------LQNSENITIEN--TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191 (197)
T ss_dssp EEEEEEEESCCEEEEEE--TTEE-------CCCCSSEEEEE--CSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEeeeeCCeeEEeE--CCEE-------CCCCCceEEEE--cCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEE
Confidence 579999999 9999998 3322 23455666654 23457899999995 89999999994 4566677777
Q ss_pred EEEEc
Q psy3125 78 LNVDD 82 (163)
Q Consensus 78 l~V~~ 82 (163)
|.|.+
T Consensus 192 l~V~~ 196 (197)
T 3lcy_A 192 VEIQD 196 (197)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87764
|
| >3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=68.39 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=46.8
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+++. + ..+.|+|+..+..+ .......+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~---~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 86 (126)
T 3moq_A 20 INCVLRDASFELKDTGWYRTKLGSTN---EQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF 86 (126)
T ss_dssp EEEEEESCSSCCCEEEEEEEETTCCC---CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeecCccCCceEEEEEeCCCCCc---eEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEE
Confidence 68999876 4 78999996432211 01122457888876545678999999999999999999994
|
| >1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=66.81 Aligned_cols=82 Identities=13% Similarity=0.274 Sum_probs=53.5
Q ss_pred CceEEecC----CCcEEEEEecCC---e-eEEecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C
Q psy3125 1 MACTVMGL----GRPVSWMRKRDL---H-ILTTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P 70 (163)
Q Consensus 1 l~C~~~~~----~~~v~W~k~~~~---~-~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~ 70 (163)
|+|.+... ...+.|+|.... . ++.... ......+|+.+..+...+.++|.|.+++.+|+|.|.|.+... .
T Consensus 20 L~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~ 99 (117)
T 1xed_A 20 ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99 (117)
T ss_dssp EEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGG
T ss_pred EEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence 57888765 267999996432 2 222221 112235788887655567899999999999999999999542 2
Q ss_pred CeeEEEEEEEEc
Q psy3125 71 KMNMAIMLNVDD 82 (163)
Q Consensus 71 ~~~~~~~l~V~~ 82 (163)
.......|.|.+
T Consensus 100 ~l~f~~~~~~~~ 111 (117)
T 1xed_A 100 GLSFDVSLEVLE 111 (117)
T ss_dssp CCEEEEEEEEEC
T ss_pred CeeEEEEEEEee
Confidence 344555566654
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=71.78 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=50.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| ++..+ ....++.+.. .+.+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 118 l~C~~~g~p~~~v~W~~--~g~~~-------~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 184 (189)
T 2v5t_A 118 FSCRASGSPEPAISWFR--NGKLI-------EENEKYILKG----SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184 (189)
T ss_dssp EECEEEEESCCEEEEEE--TTEEC-------CCSSSEEEET----TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEccCCCCeEEEEE--CCEEC-------cCCCcEEEec----CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEE
Confidence 579999999 9999998 33222 2345565543 2457999999999999999999 445566667777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 185 ~V~v 188 (189)
T 2v5t_A 185 QVFV 188 (189)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
|
| >2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=65.61 Aligned_cols=67 Identities=16% Similarity=0.418 Sum_probs=47.1
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEecc---e-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTNI---Y-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~~---~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.+ ..|.|+|...+ . ++.... . .. ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 22 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 22 LSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYYCKAS 101 (121)
T ss_dssp EEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEET
T ss_pred EEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998643 68999996432 2 222111 1 11 1247999886544578999999999999999999985
|
| >1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.3e-10 Score=68.41 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=47.7
Q ss_pred CceEEecC-C-CcEEEEEecCCe----eEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLH----ILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~----~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + ..|.|+|..... ++... .......+||.+..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 20 MDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG 95 (116)
T ss_dssp ECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence 68999887 5 789999965321 22211 111112578988643345688999999999999999999954
|
| >2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.1e-10 Score=69.51 Aligned_cols=84 Identities=18% Similarity=0.364 Sum_probs=52.4
Q ss_pred CceEEecC-C-CcEEEEEecCC--eeEEecceEecCCCeEEEecc---CCCCeEEEEEcccCcCCCeeEEEEeeCCCC--
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL--HILTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQVNTEPK-- 71 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~--~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-- 71 (163)
|.|.+.+. + +.|.|+|.... .++...... ..+|+....+ ......+|.|.+++.+|+|.|.|.+.+...
T Consensus 28 L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~--~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~ 105 (136)
T 2d9c_A 28 LRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPD 105 (136)
T ss_dssp ECCEESCCCSCCCCEEEETTTSSCEEEEESSSC--CCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEECCSSS
T ss_pred EEEEEcCCCCCceEEEEeecCCCeEEEEEcCCC--cccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCc
Confidence 68999876 4 88999995422 122211110 1146554321 112478899999999999999999954221
Q ss_pred -ee----EEEEEEEEcCCCc
Q psy3125 72 -MN----MAIMLNVDDRGRG 86 (163)
Q Consensus 72 -~~----~~~~l~V~~~~~~ 86 (163)
.. ..+.|.|..++..
T Consensus 106 ~~~~~~g~~t~L~V~~~~s~ 125 (136)
T 2d9c_A 106 DVEFKSGAGTELSVRAKPSA 125 (136)
T ss_dssp CEEEEECCCEEEEEECCCCC
T ss_pred ccceeeCCCeEEEEEeCCCC
Confidence 11 4567888876543
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-10 Score=67.96 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=42.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC--eeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK--MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~--~~~~~ 76 (163)
|.|.+.+.| +.|.|+| +...+. ...+.+|.|.+++.+|+|.|+|.+.+ ... .+..+
T Consensus 30 l~C~~~g~p~~~v~W~k--~~~~~~------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 30 LTCEVPAQPSPQIHWMK--DGVPLP------------------LPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp EECCCSSCSSCCCCCEE--SSSBCS------------------SCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred EEEEEccCCCCEEEEEE--CCEECc------------------CCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 579999999 9999998 222111 01245799999999999999999955 333 34455
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 90 ~v~V~ 94 (96)
T 2ens_A 90 SISII 94 (96)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55554
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-10 Score=67.36 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=54.2
Q ss_pred eEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 87 ARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
..+..|..+.+.|... ..+.+.|++++..+............|.|.+++.+|+|.|+|.| |..+..+..+.|.|.+
T Consensus 13 ~~v~~G~~v~L~C~~~g~pp~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 90 (99)
T 2cr3_A 13 FLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD 90 (99)
T ss_dssp CCBCTTSCEEEECCCCSSCCEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCS
T ss_pred eEEeCCCcEEEEEEecCCCCeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEec
Confidence 3466788899999643 23578898876533211100001236999999999999999999 8888888888888865
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=65.64 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=51.1
Q ss_pred CCeEEEecC--CCCceeEEEEeCCCeEEEec---------CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 92 GPLLNFAFP--DLLTTNIYTYTGDARFSVIH---------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
+..+.+.|. ..+.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.| |..|..+.++.|.
T Consensus 16 ~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 95 (103)
T 1wwb_X 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95 (103)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred CcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEE
Confidence 344555553 45667888888765332111 01122455999999999999999999 9999999999999
Q ss_pred EecC
Q psy3125 160 VDGK 163 (163)
Q Consensus 160 V~~~ 163 (163)
|.++
T Consensus 96 V~~~ 99 (103)
T 1wwb_X 96 FMGW 99 (103)
T ss_dssp CSCC
T ss_pred ECCC
Confidence 8753
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=66.71 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=54.3
Q ss_pred ceEeeCCCeEEEecCCC--CceeEEEEeCCCeEE--------------EecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 86 GARLSAGPLLNFAFPDL--LTTNIYTYTGDARFS--------------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
...+..|..+.+.|... +...+.|+..+.... +.. .......|.|.+++.+|+|.|+|.| |.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 88 (124)
T 3rbg_A 10 TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDEGVYKCLHYSD 88 (124)
T ss_dssp EEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE-EETTEEEEEESSCCGGGCEEEEEEEESS
T ss_pred cEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe-CCCCEEEEEECCCChHHCEEEEEEEEcC
Confidence 34566788888888642 446778886554332 111 1123568999999999999999999 77
Q ss_pred CCCccEEEEEEEec
Q psy3125 149 EPKMNMAIMLNVDG 162 (163)
Q Consensus 149 ~~~~~~~~~L~V~~ 162 (163)
+..+..+.|.|.+
T Consensus 89 -g~~~~~~~l~V~~ 101 (124)
T 3rbg_A 89 -SVSTKEVKVIVLA 101 (124)
T ss_dssp -SEEEEEEEEEEEC
T ss_pred -CCCcEEEEEEEEe
Confidence 8889999999875
|
| >2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=65.63 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=46.7
Q ss_pred CceEEe-cCC-CcEEEEEecCC---e-eEEe---cce-Eec--C-CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDL---H-ILTT---NIY-TYT--G-DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~---~-~~~~---~~~-~~~--~-~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+. +.+ ..|.|+|.... . ++.. +.. .+. . .+||.+.. ..+.++|.|.+++.+|+|.|.|.+.
T Consensus 19 L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~~~ 96 (111)
T 2qhl_A 19 MECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV--NDQKFDLNIIGTREDDGGEYFCGEV 96 (111)
T ss_dssp ECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE--SSSBEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE--cCCeEEEEECCCChhHCEEEEEEEc
Confidence 579998 777 88999996432 2 2211 111 111 1 57898875 3468899999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 97 ~ 97 (111)
T 2qhl_A 97 E 97 (111)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7e-09 Score=64.32 Aligned_cols=68 Identities=15% Similarity=0.393 Sum_probs=47.3
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEecc----eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTNI----YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~~----~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|.... . ++.... .... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 22 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 101 (123)
T 2p45_B 22 LSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPEDTATYYCAAG 101 (123)
T ss_dssp EEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGGGCEEEEEEES
T ss_pred EEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998643 78999996532 1 222111 1111 246999886544568999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 102 ~ 102 (123)
T 2p45_B 102 G 102 (123)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=66.34 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=47.6
Q ss_pred CceEEecC-C-CcEEEEEecCC-------eeEEec--c-eEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL-------HILTTN--I-YTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~-------~~~~~~--~-~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+. + ..|.|+|...+ .++... . ..+ ...+||.+..+...++++|.|.+++.+|+|.|.|.
T Consensus 18 L~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~ 97 (115)
T 2atp_B 18 MSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCA 97 (115)
T ss_dssp EEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEE
T ss_pred EEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEe
Confidence 68999876 4 78999986532 122211 1 111 12579998865445678999999999999999999
Q ss_pred eeC
Q psy3125 66 VNT 68 (163)
Q Consensus 66 ~~~ 68 (163)
+..
T Consensus 98 ~~~ 100 (115)
T 2atp_B 98 TVG 100 (115)
T ss_dssp EEC
T ss_pred Ecc
Confidence 954
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.7e-09 Score=65.95 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=57.9
Q ss_pred EEEEEcCCCceEeeCCCeEEEecCCC-----CceeEEEEeCCC-----------------------eEEEecC-CCCceE
Q psy3125 77 MLNVDDRGRGARLSAGPLLNFAFPDL-----LTTNIYTYTGDA-----------------------RFSVIHP-QNSDEW 127 (163)
Q Consensus 77 ~l~V~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------------------~~~~~~~-~~~~~~ 127 (163)
.+.|..++..+.+..|..+.+.|... ....+.|++.+. |+.+... ......
T Consensus 6 ~~~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 85 (139)
T 1pko_A 6 QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKV 85 (139)
T ss_dssp CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEE
T ss_pred EEEEECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeE
Confidence 35566666667788888899998522 124678877653 1111110 011256
Q ss_pred EEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|.+++.+|+|.|+|.+ +..+..+..+.|.|..
T Consensus 86 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~ 121 (139)
T 1pko_A 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121 (139)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEec
Confidence 8999999999999999999 6666777788888863
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-10 Score=70.89 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=53.5
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecc--eEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--C
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNI--YTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--K 71 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~--~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~ 71 (163)
|+|... ... ..|.|+|.+...+..... .... ..+|+.+.. .+.+|.|.+++.+|+|.|.|++.+.. .
T Consensus 24 L~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~----~~~sL~I~nv~~~DsG~Y~c~v~~~~~~~ 99 (121)
T 2edo_A 24 LNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDP----QSGALYISKVQKEDNSTYIMRVLKKTGNE 99 (121)
T ss_dssp ECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECT----TTCCEEESSCCGGGCSEEEEEEEETTTEE
T ss_pred EeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeC----CCceEEEeCCCHHHCeEEEEEEEcCCCcE
Confidence 567663 334 789999865423322211 1111 124655542 35689999999999999999995432 3
Q ss_pred eeEEEEEEEEcCCCceEe
Q psy3125 72 MNMAIMLNVDDRGRGARL 89 (163)
Q Consensus 72 ~~~~~~l~V~~~~~~~~v 89 (163)
....+.|.|.++.+.+.+
T Consensus 100 ~~~~~~L~V~~~~~~P~I 117 (121)
T 2edo_A 100 QEWKIKLQVLDPVPKPVI 117 (121)
T ss_dssp EECCEECEEECCSCCCCC
T ss_pred EEEEEEEEEECCCCCCEE
Confidence 456778899887655544
|
| >1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=65.62 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=47.6
Q ss_pred CceEEecC-C-CcEEEEEecCC---e-eEEe-cceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---H-ILTT-NIYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~-~~~~-~~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+... + ..|.|+|.... . ++.. +.... ...+||.+..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 20 LLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp ECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence 68999865 4 78999986432 1 2221 11111 12579988754345688999999999999999999954
|
| >2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=65.94 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C-CeeEEEEEEEEcC
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P-KMNMAIMLNVDDR 83 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~-~~~~~~~l~V~~~ 83 (163)
.+|..+.. +++|.|++++.+|+|.|+|++.+. . .....+.|+|..+
T Consensus 63 ~gR~~~~~-----ngSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~~ 110 (111)
T 2qsq_A 63 SGREIIYP-----NASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPE 110 (111)
T ss_dssp CSCEEECT-----TSCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred CCcEEEec-----CCcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEecC
Confidence 46877764 558999999999999999999542 3 3567778888753
|
| >3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=67.44 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=50.3
Q ss_pred CceEEecCC-C----cEEEEEecC----CeeEEe--c-ceEecC----CCeEEEeccCC---------CCeEEEEEcccC
Q psy3125 1 MACTVMGLG-R----PVSWMRKRD----LHILTT--N-IYTYTG----DARFSVIHPQN---------SDEWNMKIDYAQ 55 (163)
Q Consensus 1 l~C~~~~~~-~----~v~W~k~~~----~~~~~~--~-~~~~~~----~~r~~~~~~~~---------~~~~~L~i~~v~ 55 (163)
|+|.+...+ + .|.|+|.+. ..+..+ . +..... .+|+.+..... .++++|.|.+++
T Consensus 22 L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~sL~I~~v~ 101 (128)
T 3r0n_A 22 LPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLT 101 (128)
T ss_dssp ECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBCCEEECSCC
T ss_pred EEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCeEEEEccCC
Confidence 689999876 4 899998421 112111 1 111211 36777765321 236799999999
Q ss_pred cCCCeeEEEEeeCC--CCeeEEEEEEE
Q psy3125 56 KRDAGIYECQVNTE--PKMNMAIMLNV 80 (163)
Q Consensus 56 ~~D~G~Y~C~~~~~--~~~~~~~~l~V 80 (163)
.+|+|.|+|.+.+. +.....+.|.|
T Consensus 102 ~~D~G~Y~C~v~~~~~g~~~~~~~L~V 128 (128)
T 3r0n_A 102 VEDEGNYTCEFATFPKGSVRGMTWLRV 128 (128)
T ss_dssp GGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred chhCeEEEEEEEeCCCCCcccEEEEEC
Confidence 99999999998543 34455555554
|
| >3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-09 Score=64.28 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=51.1
Q ss_pred CceEEecC---C-CcEEEEEecCC---e-eEEe--cceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL---G-RPVSWMRKRDL---H-ILTT--NIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~~~~---~-~~~~--~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+... + ..|.|+|.... . ++.. +... .. ..+||.+..+.....++|.|.+++.+|+|.|.|.+.
T Consensus 18 L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~ 97 (116)
T 3bj9_1 18 LTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMG 97 (116)
T ss_dssp EEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCChhHCEEEEEEEe
Confidence 68999864 4 88999996431 2 2221 1111 11 247888875433346799999999999999999995
Q ss_pred CCCC--eeEEEEEEEE
Q psy3125 68 TEPK--MNMAIMLNVD 81 (163)
Q Consensus 68 ~~~~--~~~~~~l~V~ 81 (163)
.... ....+.|.|.
T Consensus 98 ~~~~~~fg~gT~L~V~ 113 (116)
T 3bj9_1 98 ARSTHVFGSGTQLTVL 113 (116)
T ss_dssp CSSCCEECCCEEEEEE
T ss_pred CCCCcEECCCEEEEEe
Confidence 4321 2233445554
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8.7e-09 Score=66.32 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=59.9
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. .......|.|.+++..|+|.|+|.| |..|..+
T Consensus 47 ~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 125 (154)
T 1fhg_A 47 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY-DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125 (154)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE-CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEE-CCCCeEEEEECCCChhcCEEEEEEEEECCCeEE
Confidence 3445678889999999964 34567899987643 33222 1123467999999999999999999 8889999
Q ss_pred EEEEEEEec
Q psy3125 154 MAIMLNVDG 162 (163)
Q Consensus 154 ~~~~L~V~~ 162 (163)
..+.|.|..
T Consensus 126 ~~~~l~V~~ 134 (154)
T 1fhg_A 126 CTAELLVET 134 (154)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEeC
Confidence 999999874
|
| >1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=64.14 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=58.0
Q ss_pred EEEEEcCCCceEeeCCCeEEEecCC-----CCceeEEEEeCCCe----EEEe----------------------cCC-C-
Q psy3125 77 MLNVDDRGRGARLSAGPLLNFAFPD-----LLTTNIYTYTGDAR----FSVI----------------------HPQ-N- 123 (163)
Q Consensus 77 ~l~V~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~----------------------~~~-~- 123 (163)
.+.|..++..+.+..|..+.+.|.. .....+.|++.... +... ... .
T Consensus 4 ~~~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 83 (135)
T 1xt5_A 4 IMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGR 83 (135)
T ss_dssp EEEEECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTT
T ss_pred EEEEeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCc
Confidence 3566666667778888889999852 34456788765432 1110 000 0
Q ss_pred -----CceEEEEecccCcCCCeeEEEEc-CCCC-----CccEEEEEEEecC
Q psy3125 124 -----SDEWNMKIDYAQKRDAGIYECQV-NTEP-----KMNMAIMLNVDGK 163 (163)
Q Consensus 124 -----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-----~~~~~~~L~V~~~ 163 (163)
.....|.|.+++.+|+|.|.|.+ +... .....+.|.|.|.
T Consensus 84 ~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g~ 134 (135)
T 1xt5_A 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 134 (135)
T ss_dssp EEESCTTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEETT
T ss_pred EEEecCCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEecC
Confidence 11356999999999999999999 5433 3348899999874
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=64.93 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=55.6
Q ss_pred EEEcCCCceEeeCCCeEEEecCC-CC--ce----eEEEEeCC-------------------CeEEEecCCC-C--ceEEE
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD-LL--TT----NIYTYTGD-------------------ARFSVIHPQN-S--DEWNM 129 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~-~~--~~----~~~~~~~~-------------------~~~~~~~~~~-~--~~~~L 129 (163)
.|..++. +.+..|..+.+.|.. .. .. .+.|++.+ .|+.+..... . ...+|
T Consensus 3 ~v~~p~~-v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL 81 (118)
T 3udw_C 3 VVQAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81 (118)
T ss_dssp EEECCSE-EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCE
T ss_pred EEeCCCe-EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEE
Confidence 3444443 667778888888864 21 11 47888763 2333322111 1 15679
Q ss_pred EecccCcCCCeeEEEEc-C-CCCCccEEEEEEEec
Q psy3125 130 KIDYAQKRDAGIYECQV-N-TEPKMNMAIMLNVDG 162 (163)
Q Consensus 130 ~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L~V~~ 162 (163)
+|.+++.+|+|.|+|.+ + ..+..+..+.|.|..
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~ 116 (118)
T 3udw_C 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116 (118)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEeecChHHCeEEEEEEEECCCCCccceEEEEEEe
Confidence 99999999999999999 6 567778889999875
|
| >1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.7e-11 Score=71.62 Aligned_cols=68 Identities=15% Similarity=0.339 Sum_probs=47.9
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEecc-eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.+... ++.... .....++||.+..+...++++|.|.+++.+|+|.|.|.+.+
T Consensus 19 L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 92 (110)
T 1u3h_A 19 LNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 92 (110)
Confidence 689998887 899999854221 111111 11224678887754345678999999999999999999954
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-10 Score=76.25 Aligned_cols=139 Identities=10% Similarity=0.115 Sum_probs=75.6
Q ss_pred CceEEecCC----CcEEEEEecCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-ee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK-MN 73 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-~~ 73 (163)
|.|.+.+.+ +.|.| + +..+... +......+++|. ...+|.|.+++.+|+|.|+|++.+... ..
T Consensus 24 L~C~~~g~~p~~~~~v~W-~--~~~~~~~~~~~~~~~~~g~~~-------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~ 93 (214)
T 1ow0_A 24 LTCTLTGLRDASGVTFTW-T--PSSGKSAVQGPPERDLCGCYS-------VSSVLPGCAEPWNHGKTFTCTAAYPESKTP 93 (214)
T ss_dssp CEEEETTCCSCCCCCCCB-S--SCSSCCCEECCCCCCSTTCCC-------EEEECTTTHHHHHHTCEEEEEECCSSCSSC
T ss_pred EEEEEeeeECCCCeEEEE-c--CCCCCCcccCCceECCCCcEE-------EEEEEEEeHHHcCCCCeEEEEEecCCCCCc
Confidence 689999874 48999 5 2222110 000001122221 245799999999999999999954322 12
Q ss_pred EEEEEEE---EcCCCceE--------eeCCCeEEEecCCC---C-ceeEEEEeCCCeEEEe--------cCC--CCc---
Q psy3125 74 MAIMLNV---DDRGRGAR--------LSAGPLLNFAFPDL---L-TTNIYTYTGDARFSVI--------HPQ--NSD--- 125 (163)
Q Consensus 74 ~~~~l~V---~~~~~~~~--------v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~--------~~~--~~~--- 125 (163)
....+.+ ..+ +.+. +..|..+.+.|... + ...+.|++++..+... ... ...
T Consensus 94 ~~~~i~~~~~~~~-P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~ 172 (214)
T 1ow0_A 94 LTATLSKSGNTFR-PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA 172 (214)
T ss_dssp EEEEEECCSSCCC-CEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEE
T ss_pred eeEeeccCCCCCC-CEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEE
Confidence 2223321 111 1221 23456688888642 2 3478899876532110 110 111
Q ss_pred -eEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 126 -EWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 126 -~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
...|.|.....+|.|.|+|.| +...
T Consensus 173 ~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 173 VTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp EEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred EEEEEEECHHHccCCCEEEEEEECCCC
Confidence 234556665556799999999 6543
|
| >1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-09 Score=65.19 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=49.9
Q ss_pred CceEEec---CC-CcEEEEEecCCe---eEEecce----------------EecCC--CeEEEeccCCCCeEEEEEcccC
Q psy3125 1 MACTVMG---LG-RPVSWMRKRDLH---ILTTNIY----------------TYTGD--ARFSVIHPQNSDEWNMKIDYAQ 55 (163)
Q Consensus 1 l~C~~~~---~~-~~v~W~k~~~~~---~~~~~~~----------------~~~~~--~r~~~~~~~~~~~~~L~i~~v~ 55 (163)
|+|.+.. .+ +.|.|+|.+... ++..... ..... +|+.+.. ..+.+|.|.+++
T Consensus 24 L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~sL~I~~v~ 100 (135)
T 1xt5_A 24 LPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN---LAAPTLRLTHVH 100 (135)
T ss_dssp ECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC---TTSCCEEECSCC
T ss_pred EeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec---CCCCeEEECCCC
Confidence 6899864 45 899999965431 2221100 00122 6777653 246789999999
Q ss_pred cCCCeeEEEEeeCCC------CeeEEEEEEEEc
Q psy3125 56 KRDAGIYECQVNTEP------KMNMAIMLNVDD 82 (163)
Q Consensus 56 ~~D~G~Y~C~~~~~~------~~~~~~~l~V~~ 82 (163)
.+|+|.|.|.+.+.. .....+.|.|..
T Consensus 101 ~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g 133 (135)
T 1xt5_A 101 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 133 (135)
T ss_dssp GGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred hhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence 999999999995422 123566676654
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=70.51 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=52.6
Q ss_pred CceEEecCC--CcEEEEEec--CCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG--RPVSWMRKR--DLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+.| +.|.|+|.+ +..++.. ..++|+.+.. ..+..+|.|.+++ .+|+|.|+|.+ +..+....
T Consensus 103 l~C~~~g~p~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~ 175 (184)
T 3b5h_A 103 LVCKSESVPPVTDWAWYKITDSEDKALMN-----GSESRFFVSS--SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175 (184)
T ss_dssp EEEECCCSSCCCEEEEEECCSSSCEECCT-----TGGGTEEEEE--ETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCCeEEEEEcCCCCCEEeec-----CCCCEEEEEe--cCCeeEEEEeeccccccCceEEEEEEeCCCcceE
Confidence 579999988 899999832 2222110 1236787775 2356789999999 99999999999 45556666
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|.|.
T Consensus 176 ~~~l~V~ 182 (184)
T 3b5h_A 176 IITLRVR 182 (184)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6777765
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=63.60 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=54.9
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCC-----CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQN-----SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+..|..+.+.|.. .+.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.| |..|..+..+.|
T Consensus 18 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 97 (100)
T 3caf_A 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97 (100)
T ss_dssp EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEE
Confidence 456678888998864 3456788998765433211111 12346999999999999999999 888999999998
Q ss_pred EEe
Q psy3125 159 NVD 161 (163)
Q Consensus 159 ~V~ 161 (163)
.|.
T Consensus 98 ~Vv 100 (100)
T 3caf_A 98 DVV 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 873
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=73.18 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=42.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.++..+.. ...++|+.+.. +..-..|.|.+++.+|+|.|+|.+.+.......+++
T Consensus 126 l~C~~~G~P~P~v~W~~~~~~~~~~-----~~~~~r~~~~~--~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~v 197 (203)
T 4fa8_A 126 VTCTVNAFPHPHVQWLMPEGVEPAP-----TAANGGVMKEK--DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYV 197 (203)
T ss_dssp EEEEEEEESCCEEEECCC-----------------CCEECT--TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEEE
T ss_pred EEEEcCCCCCCEEEEEECCeeecCc-----ccccceEEEeC--CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 689999999 999998743322111 11245666554 223345667899999999999999554333333343
|
| >2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=64.30 Aligned_cols=68 Identities=16% Similarity=0.423 Sum_probs=47.4
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEecc----eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTTNI----YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~~~----~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|..... ++.... .... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (117)
T 2yc1_A 20 LSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAEDTAVYYCARG 99 (117)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998653 789999965321 222111 1111 246999886544678999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (117)
T 2yc1_A 100 G 100 (117)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-09 Score=63.90 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=45.8
Q ss_pred CceEEecCC-------CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-------RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-------~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ +.|.|+|.... ..+....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 98 (114)
T 1eeq_A 21 INCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSG--SGTDFTLTISSLQAEDVAVYYCQQYY 98 (114)
T ss_dssp EEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEee--cCCEEEEEECCCCcccCEEEEEEEee
Confidence 579988764 68999996432 2222111111 1257888764 34688999999999999999999954
|
| >1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=66.59 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=51.2
Q ss_pred CceEEecC------C-CcEEEEEecCC--eeEEecc-eE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL------G-RPVSWMRKRDL--HILTTNI-YT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~------~-~~v~W~k~~~~--~~~~~~~-~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+... . ..|.|+|...+ .++.... .. ....+|+.+..+...++++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~ 99 (119)
T 1qfo_A 20 IPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFE 99 (119)
T ss_dssp ECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeeCCCccCCCCCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEEEccCCcccCceEEEEEE
Confidence 67988742 2 67899996532 1232221 10 11246998876434568899999999999999999996
Q ss_pred CCCC----eeEEEEEEEE
Q psy3125 68 TEPK----MNMAIMLNVD 81 (163)
Q Consensus 68 ~~~~----~~~~~~l~V~ 81 (163)
..+. ....+.|.|.
T Consensus 100 ~~~~~~~~~~~~~~L~V~ 117 (119)
T 1qfo_A 100 ISDSNRWLDVKGTTVTVT 117 (119)
T ss_dssp CC-CCEEECSSCEEEEEE
T ss_pred eCCCceecccCCeEEEEe
Confidence 5421 1134556654
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=71.96 Aligned_cols=69 Identities=28% Similarity=0.494 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~ 77 (163)
|.|.+.+.| +.+.|+| ++.. +....++.+.. +.+|.|.+++.+|+|.|+|.+.+ .+.. +..+.
T Consensus 120 l~C~~~g~p~~~v~W~~--~~~~-------~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~ 185 (192)
T 2iep_A 120 LPCTTMGNPKPSVSWIK--GDSA-------LRENSRIAVLE-----SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVK 185 (192)
T ss_dssp ECCEEEEESCCEEEEEE--TTEE-------CCCCSSEEECT-----TSCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEEeccCCceEEEEe--CCEE-------ccCCCcEEEec-----CCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEE
Confidence 579999999 9999998 3322 22344555543 23699999999999999999954 4333 44577
Q ss_pred EEEEcC
Q psy3125 78 LNVDDR 83 (163)
Q Consensus 78 l~V~~~ 83 (163)
|.|..+
T Consensus 186 l~V~~p 191 (192)
T 2iep_A 186 LEVEVF 191 (192)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 777654
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-10 Score=68.07 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=32.1
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
..+|.|++++.+|+|.|+|.+ +..+.....+.|.|..
T Consensus 88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~ 125 (126)
T 1eaj_A 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125 (126)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence 356999999999999999999 7667778889998864
|
| >1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-09 Score=67.24 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=47.1
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEecc--e--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTNI--Y--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~~--~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ ..+.|+|...+ . ++.... . ....++||.+..+...+.++|.|.+++.+|+|.|.|.+...
T Consensus 19 L~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 98 (114)
T 1u9k_A 19 VKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHP 98 (114)
T ss_dssp EEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCChHHCEEEEEEEecC
Confidence 579887543 57999996432 1 222111 0 11124799887644456899999999999999999999553
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=82.18 Aligned_cols=70 Identities=17% Similarity=0.368 Sum_probs=56.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+....|+.+... .+..+|.|.++.++|+|.|+|.+ |..+..+..+.|
T Consensus 502 ~~~~v~g~P~P~v~W~k---------~~~el~~s~~~~i~~~--~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l 570 (573)
T 3uto_A 502 FYCRVIASSPPVVTWHK---------DDRELKQSVKYMKRYN--GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570 (573)
T ss_dssp EEEEEECSSCCEEEEEE---------TTEECCSSSSEEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEccCCCeEEEEE---------CCEEcccCCcEEEEEc--CCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEE
Confidence 579999999 9999998 3333345678888763 46889999999999999999999 667778888888
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 571 ~Vt 573 (573)
T 3uto_A 571 NVT 573 (573)
T ss_dssp EEC
T ss_pred EEC
Confidence 773
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=64.68 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=57.2
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
+....+..|..+.+.|.. .+...+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+..+.|
T Consensus 15 p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 94 (118)
T 2eo9_A 15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94 (118)
T ss_dssp CCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCE
T ss_pred CCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEE
Confidence 344567788999999974 345678999876543210000 001226999999999999999999 888998889999
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
.|..
T Consensus 95 ~V~~ 98 (118)
T 2eo9_A 95 EVQE 98 (118)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8875
|
| >1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B | Back alignment and structure |
|---|
Probab=98.92 E-value=7.8e-09 Score=63.91 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=46.6
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEe---cceE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTT---NIYT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~---~~~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|..... ++.. +... . ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (121)
T 1j05_H 20 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF 99 (121)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998653 789999965321 1211 1111 1 1246898875433568899999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (121)
T 1j05_H 100 G 100 (121)
T ss_dssp B
T ss_pred c
Confidence 4
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=73.15 Aligned_cols=68 Identities=15% Similarity=0.355 Sum_probs=47.7
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.+.. . ++.. .......++||.+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus 147 L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 220 (238)
T 2p1y_A 147 LNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAID 220 (238)
T ss_dssp EEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred EEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEee
Confidence 689999999 99999996421 1 1111 1111123568887643345678999999999999999999954
|
| >2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-09 Score=70.69 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=56.4
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEec-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC----C
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTTN-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE----P 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~----~ 70 (163)
|.|.+.+.. ..|.|+|+..+. ++... .......+||.+..+...++++|.|.+++.+|+|.|.|.+... .
T Consensus 20 L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~ 99 (203)
T 2bnu_A 20 LNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSY 99 (203)
T ss_dssp EEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSSTT
T ss_pred EEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCcce
Confidence 679998877 789999965321 22211 1111235799987654567899999999999999999999542 1
Q ss_pred --CeeEEEEEEEEcC
Q psy3125 71 --KMNMAIMLNVDDR 83 (163)
Q Consensus 71 --~~~~~~~l~V~~~ 83 (163)
.....+.|.|...
T Consensus 100 ~~~~g~gt~L~V~~~ 114 (203)
T 2bnu_A 100 IPTFGRGTSLIVHPY 114 (203)
T ss_dssp CCEECCCEEEEEECC
T ss_pred eeeeCCCEEEEEeCC
Confidence 1123457777753
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-09 Score=62.36 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCceEeeCCCeEEEecCC-CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD-LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA 155 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~ 155 (163)
.+....+..|..+.+.|.. .+...+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.|.+ .+..
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~ 88 (103)
T 2edf_A 14 PLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVC--EGTMAMLVIRGASLKDAGEYTCEVEA---SKST 88 (103)
T ss_dssp CCCCEEECTTSCEEECCEESSSSCCCCEEESSCBCCCSSSEEEEE--ETTEEEEEESSCCTTTCSEEEEECSS---CEEE
T ss_pred cCCccEEcCCCCEEEEEEEeCCCCcEEEEECCEEccCCCCEEEEE--CCCEEEEEECCCCcccCEEEEEEEcc---CCcE
Confidence 3445677788889999963 24457889887653 33332 12356799999999999999999933 4778
Q ss_pred EEEEEecC
Q psy3125 156 IMLNVDGK 163 (163)
Q Consensus 156 ~~L~V~~~ 163 (163)
+.|.|..+
T Consensus 89 ~~l~V~~~ 96 (103)
T 2edf_A 89 ASLHVEEK 96 (103)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 88888753
|
| >1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=64.66 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred CceE-EecCC--CcEEEEEecCC-eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACT-VMGLG--RPVSWMRKRDL-HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~-~~~~~--~~v~W~k~~~~-~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|. +.+.+ ..|.|+|.... ..+....... ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 93 (109)
T 1pew_A 20 ISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYD 93 (109)
T ss_dssp EEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 6799 77664 78999986521 1121111111 12478988754456789999999999999999999954
|
| >3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=68.19 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=53.2
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC-Cee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~~ 73 (163)
|.|.+.+.+ ..|.|+|.... . ++...... ....+||.+.. ..++++|.|.+++.+|+|.|.|.+.+.. ...
T Consensus 20 L~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~l~~~DsG~Y~C~~~~~~~~fg 97 (143)
T 3u6r_L 20 LSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSG--SGTDFTLTISNLEPEDFAVYYCQQRSDWVTFG 97 (143)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEECSSBCEEC
T ss_pred EEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEc--cCCEEEEEEccCcccCCEEEEEEEecCCCEEC
Confidence 689999887 88999996421 2 22222111 11257888874 3468999999999999999999995432 223
Q ss_pred EEEEEEEEc
Q psy3125 74 MAIMLNVDD 82 (163)
Q Consensus 74 ~~~~l~V~~ 82 (163)
..+.|.|..
T Consensus 98 ~gt~L~V~~ 106 (143)
T 3u6r_L 98 GGTKVEIKA 106 (143)
T ss_dssp CCEEEEEC-
T ss_pred CCEEEEECC
Confidence 345566654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=77.71 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=50.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccC-----CCCeEEEEEcccCcCCCeeEEEEe-eCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~ 73 (163)
|.|.+.|.| +.|.|+| ++..+. ...+....... ...+.+|.|.+++.+|+|.|+|.| +..+..+
T Consensus 266 l~C~~~g~P~p~i~W~~--~g~~l~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~ 336 (347)
T 2ifg_A 266 IPFSVDGQPAPSLRWLF--NGSVLN-------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336 (347)
T ss_dssp EEEEEEEESCCEEEEEE--TTEECC-------CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEeeecCCCcEEEEe--CCEECC-------CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence 579999999 9999998 333332 11122211100 123678999999999999999999 5566667
Q ss_pred EEEEEEEEcC
Q psy3125 74 MAIMLNVDDR 83 (163)
Q Consensus 74 ~~~~l~V~~~ 83 (163)
..+.|.|.++
T Consensus 337 ~~~~l~V~~~ 346 (347)
T 2ifg_A 337 ASIMAAFMDN 346 (347)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEecCC
Confidence 7777776554
|
| >2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=67.77 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=47.5
Q ss_pred CceEEecC---C-CcEEEEEecCC---e-eEE--ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL---G-RPVSWMRKRDL---H-ILT--TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~~~~---~-~~~--~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. . ..|.|+|...+ . ++. .+... .. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~ 99 (126)
T 2h32_A 20 LTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMG 99 (126)
T ss_dssp EEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCChhHCEEEEEEEE
Confidence 67999875 3 78999996432 2 222 12211 11 146999885444568999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (126)
T 2h32_A 100 A 100 (126)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-09 Score=63.94 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=45.5
Q ss_pred CceEEecCC-----CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ +.|.|+|...+ ..+........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 96 (111)
T 1j05_L 21 MSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQTN 96 (111)
T ss_dssp EEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc--cCCEEEEEECCCCcccCEEEEEEEec
Confidence 679988764 68999996432 22221111111 246888764 34688999999999999999999954
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=60.97 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=54.7
Q ss_pred CceEeeCCCeEEEecCCCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEE
Q psy3125 85 RGARLSAGPLLNFAFPDLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 158 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L 158 (163)
....+..|..+.+.|.....+.+.|++++. ++.+.. ......|.|.+++.+|+|.|+|.| +..+..+.|
T Consensus 27 ~~~~v~~G~~v~l~C~~~~~p~v~W~k~~~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l 101 (113)
T 2edh_A 27 RNEEATEGATAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQ--DGARCELQIRGLVAEDAGEYLCMC---GKERTSAML 101 (113)
T ss_dssp CCCEECTTSCEEEEEEESSCCCCEEEESSSBCCCSSSEEEEE--ETTEEEEEECSCCSTTCEEEEEEE---TTEEEEEEE
T ss_pred CceEEeCCCeEEEEEEECCCCcEEEEECCEECCCCCcEEEEE--CCCEEEEEECCCChhhCEEEEEEe---CCCCEEEEE
Confidence 345677788899999754446788988765 333332 123557999999999999999999 677788889
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
.|..
T Consensus 102 ~V~~ 105 (113)
T 2edh_A 102 TVRA 105 (113)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8875
|
| >1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B | Back alignment and structure |
|---|
Probab=98.90 E-value=8e-09 Score=63.77 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=47.4
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEec---ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTTN---IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~~---~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|..... ++... .. ... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (120)
T 1mfa_H 20 MSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRG 99 (120)
T ss_dssp EEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence 689998643 789999864321 22211 11 111 246999886544678999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (120)
T 1mfa_H 100 G 100 (120)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-09 Score=64.64 Aligned_cols=68 Identities=19% Similarity=0.410 Sum_probs=47.4
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEecc---eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTNI---YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~~---~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ ..|.|+|.... . ++.... .... ..+||.+..+...++++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 99 (121)
T 1kxv_C 20 LSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSL 99 (121)
T ss_dssp EEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence 689998653 67999996432 1 222111 1111 2469998875445689999999999999999999943
|
| >3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-09 Score=64.50 Aligned_cols=68 Identities=16% Similarity=0.441 Sum_probs=47.0
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEec---ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTTN---IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~~---~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|..... ++... .. ... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (120)
T 3b9v_A 20 LSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARW 99 (120)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998643 789999965321 22211 11 111 246999886434568899999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (120)
T 3b9v_A 100 G 100 (120)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=64.03 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=54.4
Q ss_pred CCceEeeCCCeEEEecCC----CCceeEEEEeCCCeEEEe-----cCCCC-------ceEEEEecccCcCCCeeEEEEc-
Q psy3125 84 GRGARLSAGPLLNFAFPD----LLTTNIYTYTGDARFSVI-----HPQNS-------DEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
+....+..|..+.+.|.. .+...+.|++++..+... ..... ....|.|.+++.+|+|.|+|.|
T Consensus 17 p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 96 (112)
T 3so5_A 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96 (112)
T ss_dssp CCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEE
Confidence 444567788889999963 234678898876532100 01111 1467999999999999999999
Q ss_pred CCCCC-ccEEEEEEEe
Q psy3125 147 NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 147 ~~~~~-~~~~~~L~V~ 161 (163)
|..|. .+..+.|.|.
T Consensus 97 n~~g~~~s~~~~l~V~ 112 (112)
T 3so5_A 97 NHFGSSYSVXAXLTIN 112 (112)
T ss_dssp ETTEEEECCCEEEEEC
T ss_pred eCCCcEEEeEEEEEeC
Confidence 87777 5688888873
|
| >1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C | Back alignment and structure |
|---|
Probab=98.90 E-value=9.5e-09 Score=62.72 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=45.5
Q ss_pred CceEEecCC------CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ ..|.|+|.... ..+........ ..+||.+.. ..++++|.|.+++.+|+|.|.|.+.+
T Consensus 21 L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 97 (113)
T 1dlf_L 21 ISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGVYFCSQST 97 (113)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEc--cCCEEEEEECCCChHHCEEEEEEEec
Confidence 579988653 68999986432 22222111111 246888764 34688999999999999999999954
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=74.43 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=48.9
Q ss_pred CceEEecCC-CcEEEEEe---cCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRK---RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~ 75 (163)
|.|.+.+.| +.+.|+|. ++..+...+.........+ .........+|.|.+++.+|+|.|+|.+. ..+.....
T Consensus 134 L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~ 211 (241)
T 3grw_A 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW--ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA 211 (241)
T ss_dssp EEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEE--ECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEe--eeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEE
Confidence 579999999 99999983 2222211111000000000 01111236689999999999999999994 45666777
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|..++
T Consensus 212 ~~l~V~~~p 220 (241)
T 3grw_A 212 FWLSVHGPR 220 (241)
T ss_dssp EEEEC----
T ss_pred EEEEecCCC
Confidence 888887664
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.5e-10 Score=65.14 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L 158 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+.. .....|.|.+++.+|+|.|+|.| |..+ ..+..+.|
T Consensus 17 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v 91 (96)
T 2ens_A 17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL-----PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91 (96)
T ss_dssp STTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSS-----CCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEE
T ss_pred CCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcC-----CCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence 334567889999999974 34457889887664321 12446999999999999999999 6444 35667888
Q ss_pred EEecC
Q psy3125 159 NVDGK 163 (163)
Q Consensus 159 ~V~~~ 163 (163)
.|.++
T Consensus 92 ~V~~~ 96 (96)
T 2ens_A 92 SIIEP 96 (96)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 88764
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-09 Score=62.35 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=30.9
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
..+|+|.+++.+|+|.|.|.+ +..+.....+.|.|..|
T Consensus 71 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~V~V~ 109 (109)
T 2oyp_A 71 DVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109 (109)
T ss_dssp BCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEC
T ss_pred cEeEEEccCCChhCeEEEEEEEcCCcccceEEEEEEEeC
Confidence 457999999999999999999 65556666777777654
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=70.45 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=52.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeE----Ee---cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL----TT---NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~----~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.|.|+|.++...+ .. +...+ ...+|+.+..+......+|.|.+++.+|+|.|+|.+.+
T Consensus 142 L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 221 (242)
T 2znx_A 142 LTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD 221 (242)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred EEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence 689999875 78999996422211 10 11111 12568887754345678999999999999999999964
Q ss_pred CCCeeEEEEEEEE
Q psy3125 69 EPKMNMAIMLNVD 81 (163)
Q Consensus 69 ~~~~~~~~~l~V~ 81 (163)
.........|.|.
T Consensus 222 ~~~fG~gt~l~v~ 234 (242)
T 2znx_A 222 GDYXGQGTLVTVS 234 (242)
T ss_dssp SSCBCCCEEEEEC
T ss_pred CcccCCCeEEEEE
Confidence 3233334445444
|
| >1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-09 Score=64.15 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=47.3
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEec---ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTN---IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~---~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.+ ..|.|+|.... . ++... .. ... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 99 (120)
T 1n4x_H 20 ISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRD 99 (120)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 689998643 78999996532 1 22111 11 111 246898876433568899999999999999999996
Q ss_pred CC
Q psy3125 68 TE 69 (163)
Q Consensus 68 ~~ 69 (163)
..
T Consensus 100 ~~ 101 (120)
T 1n4x_H 100 RH 101 (120)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-09 Score=66.60 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=41.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEe--cCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTY--TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~--~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.| +.|.|+|.+....... .... ....++.+... ....+.+|.|.+++.+|+|.|+|.+.+
T Consensus 41 L~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 111 (137)
T 3qr2_A 41 LHCEAVGSPVPEIQWWFEGQGPNDIC-SQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111 (137)
T ss_dssp EEEEEECSSCCEEEEEEEESSTTCCC-EECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEeeecCCeEEEEECCCCccccc-eeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEe
Confidence 689999999 9999998432211000 0000 00224443321 112367899999999999999999954
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-07 Score=61.27 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=69.5
Q ss_pred eEEEEEcccCcCCCeeEEEEeeCC-CCeeEEEEEEEEcCCCce-------EeeCCCeEEEecCCC---Cc--eeEEEEeC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNTE-PKMNMAIMLNVDDRGRGA-------RLSAGPLLNFAFPDL---LT--TNIYTYTG 112 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~~-------~v~~~~~~~~~~~~~---~~--~~~~~~~~ 112 (163)
...|.|.+++. | |.|.|+++.. ......+.|.|...|..+ .+..|..+.+.|... +. ..+.|+++
T Consensus 49 ~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg 126 (185)
T 1iam_A 49 RKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG 126 (185)
T ss_dssp EEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred eeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeC
Confidence 34589999984 4 9999999654 456677788888765443 355678899999632 22 24799998
Q ss_pred CCeEEEecC-CCCceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 113 DARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 113 ~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
+..+..... .......|++...+.+|...|+|+| +..+
T Consensus 127 ~~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 127 EKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred CEEcccccCCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 876654321 1123446777766666666999999 5533
|
| >1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=62.97 Aligned_cols=68 Identities=18% Similarity=0.412 Sum_probs=47.6
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEe---c--ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTT---N--IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~---~--~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+. . ..|.|+|...+ . ++.. . .. .+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 99 (124)
T 1dlf_H 20 LSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCT 99 (124)
T ss_dssp EEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEE
Confidence 68999854 2 78999996532 1 2222 1 11 121 2479998865445689999999999999999999
Q ss_pred eeC
Q psy3125 66 VNT 68 (163)
Q Consensus 66 ~~~ 68 (163)
+..
T Consensus 100 ~~~ 102 (124)
T 1dlf_H 100 GIY 102 (124)
T ss_dssp EEB
T ss_pred EEe
Confidence 954
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=63.49 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=55.5
Q ss_pred CCceEeeCCCeEEEecCCC--CceeEEEEeCC--------------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 84 GRGARLSAGPLLNFAFPDL--LTTNIYTYTGD--------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~--------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
+....+..|..+.+.|... +...+.|+..+ .|+.+... ......|.|.+++.+|+|.|+|.|
T Consensus 45 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~ 123 (145)
T 1z9m_A 45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYTCSIF 123 (145)
T ss_dssp CCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEE-CSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred CceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecC-CCCeEEEEECCCChhhCEEEEEEEE
Confidence 3456677888899999642 34577887432 23332221 223578999999999999999999
Q ss_pred CCCCCccEEEEEEEec
Q psy3125 147 NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 147 ~~~~~~~~~~~L~V~~ 162 (163)
+. +..+..+.|.|..
T Consensus 124 n~-~~~~~~~~L~V~~ 138 (145)
T 1z9m_A 124 TM-PVRTAKSLVTVLG 138 (145)
T ss_dssp SS-SCEEEEEEEEEEC
T ss_pred cC-CCceEEEEEEEEe
Confidence 76 8888999999875
|
| >2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-09 Score=63.42 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=50.4
Q ss_pred CceEEecCC--CcEEEEEecCCe---eEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLH---ILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|...... ..+.|+|...+. ++.. +.......+||.+... ..+.++|.|.+++.+|+|.|.|.+.... ..
T Consensus 17 l~C~~s~~~~~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~-~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~~~d~ 95 (106)
T 2frg_P 17 VQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL-GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQI 95 (106)
T ss_dssp EEEECCGGGTTSEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEeEecCCcccCcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcC-CCCEEEEEEccCCHHHCEEEEEEeecCCCCCE
Confidence 578886332 568899975442 1111 1111223579987532 3467999999999999999999995433 22
Q ss_pred eEEEEEEEE
Q psy3125 73 NMAIMLNVD 81 (163)
Q Consensus 73 ~~~~~l~V~ 81 (163)
...+.|.|.
T Consensus 96 ~~~v~L~V~ 104 (106)
T 2frg_P 96 LHRVSLNIL 104 (106)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEe
Confidence 345555554
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.8e-09 Score=62.56 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=43.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNM 74 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~ 74 (163)
|.|.+.+.+ +.+.|+| +...+..... ....++..... ......+|.|.+++.+|+|.|+|.+.+ .+. .+.
T Consensus 30 L~C~~~~~~~~~~~i~W~k--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 105 (112)
T 3so5_A 30 FTCSAASSSDSPMTFAWXX--DNEALQDAEM--ENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105 (112)
T ss_dssp EEEEEEESCCCCCEEEEEE--TTEECTTCEE--EEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEEecCCCCCEEEEEcc--CCcccccccc--cceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEEEe
Confidence 579999553 8999998 3322211100 00011110000 001146899999999999999999954 333 345
Q ss_pred EEEEEE
Q psy3125 75 AIMLNV 80 (163)
Q Consensus 75 ~~~l~V 80 (163)
.+.|.|
T Consensus 106 ~~~l~V 111 (112)
T 3so5_A 106 XAXLTI 111 (112)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 556655
|
| >3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-09 Score=64.45 Aligned_cols=49 Identities=29% Similarity=0.576 Sum_probs=36.8
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc----cEEEEEEEecC
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM----NMAIMLNVDGK 163 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~----~~~~~L~V~~~ 163 (163)
||.+.........+|+|.+++.+|+|.|.|.+ +..+.. +..+.|.|.++
T Consensus 63 Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~ 116 (129)
T 3rrq_A 63 RFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTER 116 (129)
T ss_dssp CEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred cEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence 55554334455788999999999999999999 655554 56688888754
|
| >2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.8e-09 Score=65.61 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=52.9
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEec---ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTN---IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~---~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. . ..|.|+|...+ . ++... .. .+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~ 99 (139)
T 2d7t_H 20 VSCKASGYTFTGNYMHWVRQAPGQGLEYMGWINPKSGDTNYAQKFQGRVTMTRDTSISTVYMEVRRLRSDDTAVYYCATG 99 (139)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEeCCcccCCEEEEEEECCCCCCEEEEEEEcCCCceeeCcccCCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEe
Confidence 67999864 2 78999997532 1 22211 11 111 246899886434568999999999999999999995
Q ss_pred CCCC--eeEEEEEEEEcC
Q psy3125 68 TEPK--MNMAIMLNVDDR 83 (163)
Q Consensus 68 ~~~~--~~~~~~l~V~~~ 83 (163)
.... ....+.|.|...
T Consensus 100 ~~~~~~fg~GT~L~V~~~ 117 (139)
T 2d7t_H 100 WWGMDVWGQGTLVTVSSA 117 (139)
T ss_dssp SSSCCEECCCEEEEECC-
T ss_pred eCCcCEECCCEEEEEecc
Confidence 4221 223445666544
|
| >1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=8.8e-09 Score=64.31 Aligned_cols=68 Identities=18% Similarity=0.436 Sum_probs=46.5
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEecc---eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTNI---YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~~---~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. . ..|.|+|.... . ++.... .... ..+||.+..+...++++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 99 (127)
T 1kxt_B 20 LSCAASGYTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGP 99 (127)
T ss_dssp EEEEEC--CCSSSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEeEecCCCccceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEEc
Confidence 67999853 3 78999996432 1 222111 1111 2469998865445789999999999999999999954
|
| >1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=64.33 Aligned_cols=68 Identities=19% Similarity=0.459 Sum_probs=47.4
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEec---c-eEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTN---I-YTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+. . ..|.|+|+..+ . ++... . ... ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~ 99 (148)
T 1jtp_A 20 LSCAASGYTIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSLEPEDTAIYYCAAD 99 (148)
T ss_dssp EEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCccCCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCChhHCEEEEEEEE
Confidence 57999864 3 78999997532 1 22211 1 111 1246999886544678999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (148)
T 1jtp_A 100 S 100 (148)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=68.87 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=55.5
Q ss_pred CceEEecCC-CcEEEEEecCC----eeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC---CC--
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL----HILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT---EP-- 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~----~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~---~~-- 70 (163)
|.|.+.+.. ..|.|+|+..+ .++..........+||.+..+...+.++|.|.+++.+|+|.|.|.+.. ..
T Consensus 19 L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~ 98 (200)
T 2nw2_A 19 INCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIP 98 (200)
T ss_dssp EEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCCCC
T ss_pred EEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcceee
Confidence 579988777 78999996532 222222111112689998765456789999999999999999999953 11
Q ss_pred CeeEEEEEEEEcC
Q psy3125 71 KMNMAIMLNVDDR 83 (163)
Q Consensus 71 ~~~~~~~l~V~~~ 83 (163)
.......|.|...
T Consensus 99 ~fg~gt~L~V~~~ 111 (200)
T 2nw2_A 99 TFGRGTSLIVHPY 111 (200)
T ss_dssp EECCCEEEEEECC
T ss_pred eeCCCEEEEEecC
Confidence 1123456777753
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=66.26 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=41.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEE--EEEcccCcCCCeeEEEEeeC-CCC-eeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWN--MKIDYAQKRDAGIYECQVNT-EPK-MNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~ 75 (163)
|.|.+.|.| +.|.|+| ++..+..... ....+..... +..... |.|.+++.+|+|.|+|.+.+ .+. .+..
T Consensus 29 L~C~~~g~P~p~v~W~k--~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~ 102 (117)
T 2v9t_A 29 LNCKAEGRPTPTIEWYK--GGERVETDKD--DPRSHRMLLP--SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102 (117)
T ss_dssp ECCEEEEESCCEEEEEE--TTEECCCTTT--CSSCSEEECT--TSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCC
T ss_pred EEEECCccCCCeEEEEE--CCEeccccCC--CCcceeEEec--CCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeee
Confidence 689999999 9999998 3332221110 0011222221 112222 23337789999999999944 333 3445
Q ss_pred EEEEEEcC
Q psy3125 76 IMLNVDDR 83 (163)
Q Consensus 76 ~~l~V~~~ 83 (163)
+.|.|..+
T Consensus 103 ~~l~~~~~ 110 (117)
T 2v9t_A 103 ASLEVAAA 110 (117)
T ss_dssp EEEEEC--
T ss_pred EEEEhhhh
Confidence 55665543
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=73.48 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=51.3
Q ss_pred CceEE---ecCC-CcEEEEEecCCe-----eEEecceE----ecC----CCeEEEeccCCCCeEEEEEcccCcCCCeeEE
Q psy3125 1 MACTV---MGLG-RPVSWMRKRDLH-----ILTTNIYT----YTG----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63 (163)
Q Consensus 1 l~C~~---~~~~-~~v~W~k~~~~~-----~~~~~~~~----~~~----~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 63 (163)
|.|.+ .+.| +.|.|+|.+... ++.+.... ... ..|..+.......+.+|.|.+++.+|+|.|+
T Consensus 138 L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 217 (268)
T 3mj6_A 138 MRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217 (268)
T ss_dssp ECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEE
Confidence 57999 5667 999999853321 11110000 001 1244443221234668999999999999999
Q ss_pred EEee-CCCCeeEEEEEEEEcCCC
Q psy3125 64 CQVN-TEPKMNMAIMLNVDDRGR 85 (163)
Q Consensus 64 C~~~-~~~~~~~~~~l~V~~~~~ 85 (163)
|.+. ..+.....+.|.|...++
T Consensus 218 C~a~n~~g~~~~~~~l~V~~~~p 240 (268)
T 3mj6_A 218 CSIYVGKLESRKTIVLHVVQDEF 240 (268)
T ss_dssp EEEEETTEEEEEEEEEEEECC--
T ss_pred EEEEcCCceEEEEEEEEEEcCCC
Confidence 9994 445566777788865543
|
| >1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ... | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-09 Score=64.43 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=47.2
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEec---ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTN---IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~---~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.+ ..|.|+|.... . ++... ...+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 99 (116)
T 1a2y_B 20 ITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER 99 (116)
T ss_dssp EEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEec
Confidence 689998653 78999996532 1 22211 11111 1469988764345689999999999999999999954
|
| >1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-09 Score=63.97 Aligned_cols=68 Identities=18% Similarity=0.413 Sum_probs=46.4
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Eecc---eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TTNI---YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~~~---~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.. ..|.|+|.... ..+ .... ..+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 20 L~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 20 LSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTHY 99 (114)
T ss_dssp EEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEECC
T ss_pred EEEEEcCccccCCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEEc
Confidence 579887642 78999996422 222 2111 1111 2479998865445689999999999999999999954
|
| >2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-09 Score=65.46 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=42.5
Q ss_pred CceEEecC-C-CcEEEEEecCC--eeEEecceEecCCCeEEEecc---CCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL--HILTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~--~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + +.|.|+|.... .++..... ...+|+....+ .....++|.|.+++.+|+|.|.|.+.+
T Consensus 23 L~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 95 (127)
T 2jju_A 23 LRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFR 95 (127)
T ss_dssp ECCEESCCCSCCCEEEEECSSTTCEEEEESSS--SCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCCCCEEEEEecCCCCcEEEEECCC--CccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 68999876 5 89999995422 12221111 01246665321 123477899999999999999999954
|
| >2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-09 Score=65.49 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=42.6
Q ss_pred CceEEecC-C-CcEEEEEecCC--eeEEecceEecCCCeEEEecc---CCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL--HILTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~--~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+. + +.|.|+|.+.. .++...... ..+|+....+ ......+|.|.+++.+|+|.|.|.+..
T Consensus 27 L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~--~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 99 (120)
T 2yz1_A 27 LNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGE--HFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQ 99 (120)
T ss_dssp ECCEESCCCSCCCEEEEESSSTTCEEEEEECEE--CTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred EEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCc--ccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEc
Confidence 68999876 5 89999996422 233221111 1234432211 123467899999999999999999954
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=70.77 Aligned_cols=69 Identities=16% Similarity=0.370 Sum_probs=47.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEe-----cce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTT-----NIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~-----~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.|.|+|.+....+.. ... .....+||.+.........+|.|.+++.+|+|.|+|.+.
T Consensus 154 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 233 (256)
T 3ux9_B 154 LSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARY 233 (256)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 689999865 8999998643221110 000 011245888876544568899999999999999999996
Q ss_pred CC
Q psy3125 68 TE 69 (163)
Q Consensus 68 ~~ 69 (163)
+.
T Consensus 234 ~~ 235 (256)
T 3ux9_B 234 ID 235 (256)
T ss_dssp ET
T ss_pred cC
Confidence 53
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-09 Score=72.72 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=53.1
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.+ +.|.|+|..... .+....... ...+||.+.. .....+|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 158 L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~f 235 (256)
T 3umt_A 158 ITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR--SGSDYSLTISSLESEDFVDYYCLQYASSPPTF 235 (256)
T ss_dssp EEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEECSSSSCEE
T ss_pred EEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec--CCCEEEEEECCCChhHCEEEEEEEeeCCCcEE
Confidence 689999988 899999853221 111111111 1246777764 3457889999999999999999995422 23
Q ss_pred eEEEEEEEEcCC
Q psy3125 73 NMAIMLNVDDRG 84 (163)
Q Consensus 73 ~~~~~l~V~~~~ 84 (163)
...+.|.|..++
T Consensus 236 g~gt~L~V~~~~ 247 (256)
T 3umt_A 236 GGGTKLEIKRAA 247 (256)
T ss_dssp CCCEEEEEC---
T ss_pred CCCEEEEEECCC
Confidence 455667777653
|
| >2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=70.16 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=56.5
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.. ..|.|+|+..+. ++.. ........+||.+..+...+.++|.|.+++.+|+|.|.|.+.... ..
T Consensus 21 L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~ 100 (229)
T 2q86_A 21 LQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALF 100 (229)
T ss_dssp EEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEE
T ss_pred EEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccc
Confidence 579998777 789999975322 2221 111122357999876555678999999999999999999995422 12
Q ss_pred eEEEEEEEEcC
Q psy3125 73 NMAIMLNVDDR 83 (163)
Q Consensus 73 ~~~~~l~V~~~ 83 (163)
...+.|.|...
T Consensus 101 g~gt~L~V~~~ 111 (229)
T 2q86_A 101 GSGTQLIVIPY 111 (229)
T ss_dssp CCCEEEEEECC
T ss_pred cCCEEEEEECc
Confidence 23446777753
|
| >3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-09 Score=65.10 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=54.1
Q ss_pred CceEEe-cCC-CcEEEEEecCC---e-eEEe---cc-eEec--C-CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDL---H-ILTT---NI-YTYT--G-DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~---~-~~~~---~~-~~~~--~-~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+. +.. ..|.|+|+..+ . ++.. +. ..+. . .+||.+.. ..++++|.|.+++.+|+|.|.|.+.
T Consensus 19 L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~ 96 (137)
T 3bdb_A 19 MECSMSKVTNKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV--NDQKFDLNIIGAREDDGGEYFCGEV 96 (137)
T ss_dssp CCCBCTTCCCGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE--SSSBEEEEEESCCSTTCEEEEEEEE
T ss_pred EEeecCCCcCcceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEe--cCCEEEEEECCCCHHHCEEEEEEEc
Confidence 689998 766 88999996432 1 2221 11 1121 1 57998875 3568899999999999999999995
Q ss_pred CCCC--eeEEEEEEEEcC
Q psy3125 68 TEPK--MNMAIMLNVDDR 83 (163)
Q Consensus 68 ~~~~--~~~~~~l~V~~~ 83 (163)
.... ....+.|.|...
T Consensus 97 ~~~~~~fg~GT~L~V~~~ 114 (137)
T 3bdb_A 97 EGIIIKFTSGTRLQFEGS 114 (137)
T ss_dssp CSSCEEEEEEEEECCCCC
T ss_pred cCCeEEECCCEEEEEECC
Confidence 4332 234455666554
|
| >2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=62.62 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=46.4
Q ss_pred CceEEecC-C-CcEEEEEecCC---e-eEEecc---eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---H-ILTTNI---YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~-~~~~~~---~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. + ..|.|+|.... . ++.... .... ..+||.+.. ..++++|.|.+++.+|+|.|.|.+..
T Consensus 21 L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 97 (115)
T 2otu_A 21 LTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISNIQPEDEAIYICGVGD 97 (115)
T ss_dssp EEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEc--cCCEEEEEECCCChhHCEEEEEEEec
Confidence 68999876 5 88999996432 2 222111 1222 146888875 34678999999999999999999953
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=61.49 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=50.3
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...+....+..|..+.+.|.. .+...+.|++.. .|+.+.. ......|.|.+++.+
T Consensus 4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (108)
T 1jhl_L 4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPE 81 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTT
T ss_pred eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 3334445667778888888853 224567777642 2233221 224567999999999
Q ss_pred CCeeEEEEc-CCCC-CccEEEEEEEe
Q psy3125 138 DAGIYECQV-NTEP-KMNMAIMLNVD 161 (163)
Q Consensus 138 D~G~Y~C~a-~~~~-~~~~~~~L~V~ 161 (163)
|+|.|.|.| +... .......|.|+
T Consensus 82 DsG~Y~C~~~n~~~~~fg~gt~L~V~ 107 (108)
T 1jhl_L 82 DFAMYICQQHNEYPWTFGGGTKLEIK 107 (108)
T ss_dssp CCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred HCEEEEEEEccCCccEECCCEEEEEE
Confidence 999999999 5422 22345567665
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=71.61 Aligned_cols=140 Identities=9% Similarity=0.123 Sum_probs=75.4
Q ss_pred CceEEecC---C--CcEEEEEecCCeeEEecc---eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC-
Q psy3125 1 MACTVMGL---G--RPVSWMRKRDLHILTTNI---YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK- 71 (163)
Q Consensus 1 l~C~~~~~---~--~~v~W~k~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~- 71 (163)
|.|.+.+. | ..|.|+| ++..+.... .....+++|.+. ..|.|.....+|.|.|+|++.+...
T Consensus 44 L~C~v~g~~p~P~~i~v~W~k--~g~~l~~~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~d~~~YtC~v~h~~~~ 114 (240)
T 4acp_A 44 VTCVVVDVSHEDPEVKFNWYV--DGVEVHNAKTKPREEQYNSTYRVV-------SVLTVLHQDWLNGKEYKCKVSNKALP 114 (240)
T ss_dssp EEEEEESCCC--CCCEEEEEE--TTEEECCCEECCCEEC---CEEEE-------EEEECCHHHHHHTCCEEEEEECC---
T ss_pred EEEEEeccccCCCccEEEEEE--CCcccCCceeccceECCCCeEEEE-------EEEEEechhccCCCEEEEEEEcCCCC
Confidence 57999985 4 4799998 333221110 011224455443 3588888888899999999965332
Q ss_pred --eeEEEEEEEE-cCCCceEee-------CCCeEEEecCCC---C-ceeEEEEeCCCeEEE---e---cCCCC---ceEE
Q psy3125 72 --MNMAIMLNVD-DRGRGARLS-------AGPLLNFAFPDL---L-TTNIYTYTGDARFSV---I---HPQNS---DEWN 128 (163)
Q Consensus 72 --~~~~~~l~V~-~~~~~~~v~-------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~---~---~~~~~---~~~~ 128 (163)
....+.+.+. ..++.+.+. .+..+.+.|... + ...+.|++++..... . ....+ ....
T Consensus 115 ~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~ 194 (240)
T 4acp_A 115 APIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSK 194 (240)
T ss_dssp -CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred ccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEE
Confidence 2222221110 011112211 256677888532 2 246889887754210 0 00111 1345
Q ss_pred EEecccCcCCCeeEEEEc-CCC
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
|.|......|.|.|+|+| +..
T Consensus 195 L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 195 LTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp EEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEChHHhCCCCEEEEEEEECC
Confidence 778777778899999999 443
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-09 Score=62.18 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCceEeeCCCeEEEecCCC-CceeEEEEeCCCeE--------EEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccE
Q psy3125 84 GRGARLSAGPLLNFAFPDL-LTTNIYTYTGDARF--------SVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 154 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~ 154 (163)
+....+..|..+.+.|... +...+.|++++..+ .+.. ......|.|.+++.+|+|.|+|.|.+ .+.
T Consensus 14 ~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~ 88 (103)
T 1x44_A 14 LEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRV--EGKKHILIIEGATKADAAEYSVMTTG---GQS 88 (103)
T ss_dssp CCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTTCSEEEEE--ETTEEEEEEEEECTTTCSEEEEEETT---EEE
T ss_pred CCCEEEECCCCEEEEEEecCCCCeEEEEECCEECCCCCceEEEEEE--cCCEEEEEECCCCcccCEEEEEEECC---CcE
Confidence 3345677888899998642 44678898876432 2221 12346799999999999999999932 577
Q ss_pred EEEEEEecC
Q psy3125 155 AIMLNVDGK 163 (163)
Q Consensus 155 ~~~L~V~~~ 163 (163)
.+.|.|.++
T Consensus 89 ~~~l~V~~~ 97 (103)
T 1x44_A 89 SAKLSVDLK 97 (103)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 888888753
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-09 Score=71.67 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+ .+.| +.|.|+|.++...+.. .+.. ...+.+|.|.+++.+|+|.|+|.+ +..+..+..+.
T Consensus 141 l~C~~~~g~p~~~v~W~~~~~~~~~~~--------~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 207 (214)
T 3jz7_A 141 LKCEPKEGSLPLQFEWQKLSDSQTMPT--------PWLA-----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLR 207 (214)
T ss_dssp EEEECSBCCSSCEEEEEECSTTCCCCG--------GGGG-----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEecCCCCCCCCEEEEEECCCCCccCc--------ccee-----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEE
Confidence 57999 7888 9999998533322211 1100 112447999999999999999999 44556677777
Q ss_pred EEEEcC
Q psy3125 78 LNVDDR 83 (163)
Q Consensus 78 l~V~~~ 83 (163)
|.|.++
T Consensus 208 l~V~~P 213 (214)
T 3jz7_A 208 LDVVPP 213 (214)
T ss_dssp ECCBCC
T ss_pred EEEeCC
Confidence 777643
|
| >1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=68.38 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=55.2
Q ss_pred CceEEec-CC-CcEEEEEecCC---e-eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-----
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDL---H-ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE----- 69 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~---~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~----- 69 (163)
|.|.+.+ .. ..|.|+|+..+ . ++...... ...+||.+..+...++++|.|.+++.+|+|.|.|.+...
T Consensus 19 L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~ 97 (206)
T 1kgc_D 19 LPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSN-VNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSY 97 (206)
T ss_dssp EEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSS-EECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTTCC
T ss_pred EEEEEcCCCCCccEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCCCc
Confidence 5799987 44 78999997532 2 22221111 126899988655567899999999999999999999542
Q ss_pred C--CeeEEEEEEEEc
Q psy3125 70 P--KMNMAIMLNVDD 82 (163)
Q Consensus 70 ~--~~~~~~~l~V~~ 82 (163)
. .....+.|.|..
T Consensus 98 ~~~~~g~gt~L~V~~ 112 (206)
T 1kgc_D 98 GKLTFGQGTILTVHP 112 (206)
T ss_dssp CCCCCCCCEEEEEEC
T ss_pred ccceECCCEEEEEeC
Confidence 1 122345777765
|
| >1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.7e-09 Score=63.88 Aligned_cols=68 Identities=21% Similarity=0.493 Sum_probs=47.3
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Eec---ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TTN---IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~~---~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ ..|.|+|.... ..+ ... ...+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 99 (124)
T 1yc7_A 20 LSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQC 99 (124)
T ss_dssp EEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence 689998643 67999996532 122 111 11111 2469998865445689999999999999999999954
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-09 Score=76.84 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+ | +.|.|+|.+ +.++... ..+.|+.+ . +.+|.|.+++.+|+|.|+|.+. ..+..+..+.|
T Consensus 266 l~C~~~g-p~p~i~W~~~~-~~~~~~~----~~~~r~~~-~-----~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 333 (361)
T 2xot_A 266 IRCDTKQ-QGMTKVWVSPS-NEQVLSQ----GSNGSVSV-R-----NGDLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333 (361)
T ss_dssp ECCCCSS-TTCEEEEECTT-SCBCCSC----CSSSSEEE-E-----TTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEE
T ss_pred EEeEeeC-CCCeEEEEeCC-CeeEeec----ccCCceEe-e-----cCeEEEeecCcccCEEEEEEEecCCCccEEEEEE
Confidence 5799999 7 999999733 2222111 12347776 2 3469999999999999999994 45566777788
Q ss_pred EEEcCCCceEeeCCCeEEEecCC
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD 101 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~ 101 (163)
.|...+ ..|..+.+.|..
T Consensus 334 ~V~~~~-----~~g~~~~l~C~~ 351 (361)
T 2xot_A 334 KVYNFT-----LHGHHDTLNAAA 351 (361)
T ss_dssp EEESSC-----CC----------
T ss_pred EEEeee-----ccCCceEEEEEe
Confidence 886542 445566777754
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-09 Score=68.52 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=47.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+|.+ ..+ . . ...+|.|.+++.+|+|.|+|.+ +.....+..+.|
T Consensus 117 l~C~~~~~p~~~v~W~~~~-~~~--------------~-~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l 175 (184)
T 2ny1_B 117 LTLESPPGSSPSVQCRSPR-GKN--------------I-Q-----GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175 (184)
T ss_dssp EEEECCTTCCCEEEEECTT-SCE--------------E-E-----ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCCCCCEEEEEeCC-Ccc--------------c-c-----CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEE
Confidence 579999989 999999722 111 1 1 1356999999999999999999 445566777888
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|...+
T Consensus 176 ~V~~~p 181 (184)
T 2ny1_B 176 VVLAFQ 181 (184)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 887764
|
| >2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=61.80 Aligned_cols=68 Identities=10% Similarity=0.268 Sum_probs=45.7
Q ss_pred CceEEecCCCcEEEEEecCC---eeEE-ecce--Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLGRPVSWMRKRDL---HILT-TNIY--TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~---~~~~-~~~~--~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|........|.|+|.... .++. .... ... ..+||.+.. ...+.++|.|.+++.+|+|.|.|.+...
T Consensus 21 L~C~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~~~ 96 (121)
T 2oi9_C 21 LSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASR-PSQENFSLTLESATPSQTSVYFCASGGG 96 (121)
T ss_dssp EEEEESSCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEEC-CSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred EEEEecCCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEc-CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 57986432388999996432 2222 2111 111 256888875 3445799999999999999999999543
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=64.40 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCceEeeCCCeEEEecCCCCceeEEEEeCC------------CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 84 GRGARLSAGPLLNFAFPDLLTTNIYTYTGD------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
+....+..|..+.+.|.......+.|++.. .|+.+.. ......|.|.+++.+|+|.|+|.+ |..+
T Consensus 24 p~~~~v~~G~~v~L~C~~~~~~~v~W~r~~~g~~~~~l~~~~~r~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g 101 (133)
T 3khq_A 24 PRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQ--NGSVYTLTIQNIQYEDNGIYFCKQKCDSA 101 (133)
T ss_dssp CSEEEECTTCCEEEEEEESSSSCEEEEEECTTSCCEECCCTTTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred CceEEEeCCCeEEEEEEeCCCCEEEEEEeCCCCCCEEEEEeCCCEEEEc--CCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence 445566777778888864322667777652 3444433 134677999999999999999999 6544
Q ss_pred ----CccEEEEEEEec
Q psy3125 151 ----KMNMAIMLNVDG 162 (163)
Q Consensus 151 ----~~~~~~~L~V~~ 162 (163)
.....+.|.|.+
T Consensus 102 ~~~~~~g~gt~L~V~~ 117 (133)
T 3khq_A 102 NHNVTDSCGTELLVLG 117 (133)
T ss_dssp ------CCCEEEEEC-
T ss_pred CcceeECCCEEEEEEe
Confidence 235567788765
|
| >3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=64.22 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=46.1
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ ..|.|+|+..+ .++........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~l~~~DsG~Y~C~~~~ 93 (123)
T 3t0v_A 20 IFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK--SGTSASLAISGLRSEDEADYYCLSWD 93 (123)
T ss_dssp EEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc--cCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 579998764 78999996422 22222211111 246888764 35689999999999999999999954
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-09 Score=65.80 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=51.8
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEe--------c---CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVI--------H---PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+.+.|. ..+.+.+.|++++..+... . ......+.|.|.++...|+|.|+|.| |..|..+..+.|
T Consensus 16 ~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l 95 (126)
T 1he7_A 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95 (126)
T ss_dssp CEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEE
Confidence 34556664 5677899999887533211 1 01123567999999999999999999 999999999999
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
.|..
T Consensus 96 ~v~~ 99 (126)
T 1he7_A 96 AFMD 99 (126)
T ss_dssp CCCS
T ss_pred EEEc
Confidence 8764
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-07 Score=72.62 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=77.5
Q ss_pred CceEEecCC-CcEE-EEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCC-eeEEE
Q psy3125 1 MACTVMGLG-RPVS-WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~-W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~-~~~~~ 76 (163)
|.|.+.|.| +.|. |++..++..+...... .+.. .....+|.|.+++.+|+|.|+|.+. ..+. .+..+
T Consensus 184 l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~-------~~~~--~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~ 254 (731)
T 2v5y_A 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-------VTSS--RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254 (731)
T ss_dssp EEEEEESCCCTTCEEEEEESSSCCEEEEEEE-------ECCS--SEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCE
T ss_pred EEEEeCCCCCCceeEEEecCCCccccccceE-------Eecc--ccceEEEEEcccccccCeEEEEEEECCCCCcceeeE
Confidence 689999999 8888 7752233333222111 1111 1124679999999999999999994 4444 55667
Q ss_pred EEEEEcCCCc-----eEeeCCCeEEEecCCCCc--------eeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 77 MLNVDDRGRG-----ARLSAGPLLNFAFPDLLT--------TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 77 ~l~V~~~~~~-----~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
.|.|..++.. ........+.+.|..... -.+.+...+..+..... .....+.|.++.+.+...|+
T Consensus 255 ~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~ 332 (731)
T 2v5y_A 255 ELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQP--VDSTSYKIGHLDPDTEYEIS 332 (731)
T ss_dssp EEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEE--CCSSEEEECSCCTTCEEEEE
T ss_pred EEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEec--cCcceEEEeCCCCCCEEEEE
Confidence 7888876432 122233445555543211 02223222222221111 11245899999998888888
Q ss_pred EEc
Q psy3125 144 CQV 146 (163)
Q Consensus 144 C~a 146 (163)
|.|
T Consensus 333 V~A 335 (731)
T 2v5y_A 333 VLL 335 (731)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=62.08 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=53.3
Q ss_pred CceEEecCC-----CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+.+.+ ..|.|+|... ...+....... ...+||.+.. ..+.++|.|.+++.+|+|.|.|.+.+..
T Consensus 21 L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~~~~ 98 (126)
T 4ffy_L 21 ISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSG--SETDFTLTIDSVETDDAATYYCQQNNED 98 (126)
T ss_dssp EEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--CCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 679998764 6799999642 22222111111 1246888774 3468999999999999999999995432
Q ss_pred --CeeEEEEEEEEcCC
Q psy3125 71 --KMNMAIMLNVDDRG 84 (163)
Q Consensus 71 --~~~~~~~l~V~~~~ 84 (163)
.....+.|.|...+
T Consensus 99 ~~~fg~gT~L~V~~~g 114 (126)
T 4ffy_L 99 PYTFGGGTKLEIKGGG 114 (126)
T ss_dssp SCEECCCEEEEEEC--
T ss_pred CcEECCCEEEEEecCC
Confidence 23345677777653
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-09 Score=69.61 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeE-EEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNM-AIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~-~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+. ....++.+.. .+|.|.+++.+|+|.|+|.+.+ .+.... .+.
T Consensus 130 l~C~~~g~p~p~i~W~~--~~~~~~------~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~ 195 (212)
T 2yd1_A 130 MTCKAIGNPTPNIYWIK--NQTKVD------MSNPRYSLKD------GFLQIENSREEDQGKYECVAENSMGTEHSKATN 195 (212)
T ss_dssp ECCEEECSSCCEEEEEE--TTEECC------TTSTTEEEET------TEEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEeccCCCCeEEEEE--CCeEcc------cCCCeEEccC------CeEEEccCChhhCEEEEEEeecCCCceeEEEEE
Confidence 579999999 9999998 332221 1234554432 2799999999999999999944 444433 478
Q ss_pred EEEEcCC
Q psy3125 78 LNVDDRG 84 (163)
Q Consensus 78 l~V~~~~ 84 (163)
|.|....
T Consensus 196 l~V~~~~ 202 (212)
T 2yd1_A 196 LYVKVRR 202 (212)
T ss_dssp EEEEC--
T ss_pred EEEEecc
Confidence 8888663
|
| >1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-09 Score=63.79 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=51.5
Q ss_pred CceEEecCC----CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~ 71 (163)
|.|.+.+.+ ..|.|+|...+ ..+........ ..+||.+.. ..+.++|.|.+++.+|+|.|.|.+.....
T Consensus 20 L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 97 (120)
T 1oaq_L 20 LTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGNKAALTITGAQTEDEAIYFCALWYSNH 97 (120)
T ss_dssp EEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred EEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEec--CCCeEEEEECCCChhhCeEEEEEEccCCC
Confidence 579988653 78999996432 12221111111 246888775 34688999999999999999999954321
Q ss_pred --eeEEEEEEEEcC
Q psy3125 72 --MNMAIMLNVDDR 83 (163)
Q Consensus 72 --~~~~~~l~V~~~ 83 (163)
....+.|.|...
T Consensus 98 ~~fg~gt~L~V~~~ 111 (120)
T 1oaq_L 98 LVFGGGTKLTVLGQ 111 (120)
T ss_dssp EEECCCEEEEECC-
T ss_pred cEECCCEEEEEcCC
Confidence 223345666543
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-09 Score=68.77 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=47.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|. ...+. .. ..+.. .+.+|.|.+++.+|+|.|+|.+ +..+.....+.|
T Consensus 133 l~C~~~g~p~p~v~W~~~--~~~~~-------~~--~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 197 (201)
T 3s97_C 133 LECFALGNPVPDIRWRKV--LEPMP-------ST--AEIST----SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197 (201)
T ss_dssp EEEEEEEESCCEEEEEET--TBCCC-------TT--CEEET----TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEccCCCCCceEEEeC--CCcCC-------Cc--eeecC----CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEE
Confidence 579999999 99999982 22221 11 22222 2347999999999999999999 445666677777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 198 ~V~ 200 (201)
T 3s97_C 198 YVQ 200 (201)
T ss_dssp EEE
T ss_pred EEe
Confidence 775
|
| >2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=64.62 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=46.4
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEec---ce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTTN---IY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~~---~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ ..|.|+|.... . ++... .. ... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (123)
T 2wzp_D 20 LSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAAR 99 (123)
T ss_dssp EEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence 689998643 67999996432 1 22211 11 111 246999886544457899999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (123)
T 2wzp_D 100 S 100 (123)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=59.83 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=53.2
Q ss_pred eEeeCCCeEEEecCC-CCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD-LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 159 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~ 159 (163)
..+..|..+.+.|.. .+.+.+.|++++..+ .+.. ......|.|.+++.+|+|.|+|.| +..+..+.|.
T Consensus 18 ~~v~~G~~v~l~C~~~~p~~~v~W~k~g~~i~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~ 92 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEH--KGCQRILFINNCQMTDDSEYYVTA---GDEKCSTELF 92 (100)
T ss_dssp EEECTTEEEEEEEEESCTTSCEEEEESSCBCCCBTTEEEEE--ETTEEEEEEEEECTTTCCEEEEEE---TTEEEEEEEE
T ss_pred cEEcCCCcEEEEEEecCCCceEEEEECCEECCCCCCEEEEe--cCCEEEEEEcCCCcCcCEEEEEEE---CCceEEEEEE
Confidence 456778888898863 355688999886533 3322 133457999999999999999999 6677888898
Q ss_pred Eec
Q psy3125 160 VDG 162 (163)
Q Consensus 160 V~~ 162 (163)
|..
T Consensus 93 V~~ 95 (100)
T 2yuv_A 93 VRS 95 (100)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
|
| >3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-08 Score=62.68 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=52.3
Q ss_pred CceEEecCCCcEEEEEe-cCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CC--eeEE
Q psy3125 1 MACTVMGLGRPVSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PK--MNMA 75 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~--~~~~ 75 (163)
|.|.+.+....|.|+|+ ..+..+.. .+...+||.... ..+.++|.|.+++.+|+|.|.|.+... .. ....
T Consensus 38 L~C~~s~~~~~v~Wyrq~~~g~~~~~---l~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~G 112 (134)
T 3kg5_A 38 MHCYMNSASGNVSWLWKQEMDENPQQ---LKLEKGRMEESQ--NESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCG 112 (134)
T ss_dssp EEEECCCTTCCCEEEEESSSSSCCEE---CCCCTTTEEEEE--CSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCC
T ss_pred EEEEECCCCceEEEEEECCCCCCcEE---EEEECCeEEEEc--cCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCC
Confidence 57988775588999997 32211100 001357888775 346899999999999999999999543 11 2344
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|...+
T Consensus 113 T~L~V~~~p 121 (134)
T 3kg5_A 113 TELRVMGFS 121 (134)
T ss_dssp EEEEEECC-
T ss_pred EEEEEecCC
Confidence 567776554
|
| >4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=68.45 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=55.6
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC------
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE------ 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~------ 69 (163)
|.|.+.+.. ..+.|+|+..+ . ++..........+||.+..+...+.++|.|.+++.+|+|.|.|.+...
T Consensus 22 L~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~~~ 101 (208)
T 4ei6_A 22 LNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQG 101 (208)
T ss_dssp CEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSCCC
T ss_pred EEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCcccc
Confidence 689999877 88999996432 2 222211111145799987655567899999999999999999998431
Q ss_pred CCeeEEEEEEEEcC
Q psy3125 70 PKMNMAIMLNVDDR 83 (163)
Q Consensus 70 ~~~~~~~~l~V~~~ 83 (163)
......+.|.|...
T Consensus 102 ~~fG~GT~L~V~~~ 115 (208)
T 4ei6_A 102 LTFGLGTRVSVFPY 115 (208)
T ss_dssp CEECCCEEEEEECC
T ss_pred ccCCCCEEEEEeCc
Confidence 12234457777763
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=59.14 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCceEeeCCCeEEEecCC-CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L 158 (163)
+....+..|..+.+.|.. .+...+.|++++..+..... .......|.|.+++.+|+|.|+|.| +..+..+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---g~~~~~~~l 91 (95)
T 2k1m_A 15 PRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---GSSKVKFDL 91 (95)
T ss_dssp CCCEEEETTSCEEEEEECSSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---TTEEEEEEE
T ss_pred CCcEEEeCCCcEEEEEEeCCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---CCceEEEEE
Confidence 345667788889999975 33457889987664321110 1123467999999999999999999 556777888
Q ss_pred EEe
Q psy3125 159 NVD 161 (163)
Q Consensus 159 ~V~ 161 (163)
.|.
T Consensus 92 ~V~ 94 (95)
T 2k1m_A 92 KVI 94 (95)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
|
| >1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=63.68 Aligned_cols=68 Identities=18% Similarity=0.444 Sum_probs=47.0
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Eecc---e-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TTNI---Y-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~~~---~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|.... ..+ .... . .+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 99 (127)
T 1mqk_H 20 LSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRH 99 (127)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeCCCccCCcEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEe
Confidence 689998643 78999997532 122 1111 1 111 246999886434568999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (127)
T 1mqk_H 100 E 100 (127)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-09 Score=69.53 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=50.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+... ....|+..... ....+|.|.+++.+|+|.|+|.+.+ .+. .+..+.
T Consensus 128 l~C~~~g~p~p~v~W~~--~g~~l~~~----~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~ 199 (212)
T 2yd6_A 128 MLCAASGNPDPEITWFK--DFLPVDTS----NNNGRIKQLRS--ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199 (212)
T ss_dssp EEEEEECSSCCEEEEEE--TTEEC----------CCEEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEecCCCCCeEEEEE--CCccccCc----CCCceEEEEec--CCeEEEEEcCCCcccCEEEEEEEECCCCcccccccc
Confidence 579999999 9999998 33332211 01345555432 3467899999999999999999944 443 345667
Q ss_pred EEEEcC
Q psy3125 78 LNVDDR 83 (163)
Q Consensus 78 l~V~~~ 83 (163)
|.|...
T Consensus 200 l~~~~~ 205 (212)
T 2yd6_A 200 LYVRGT 205 (212)
T ss_dssp EEEEC-
T ss_pred EEEEec
Confidence 777655
|
| >3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama} | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=61.53 Aligned_cols=68 Identities=16% Similarity=0.371 Sum_probs=47.6
Q ss_pred CceEEecCC---CcEEEEEecCC---eeE-Ee-cce--E-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HIL-TT-NIY--T-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~-~~-~~~--~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..+.|+|+... ..+ .. ... . . ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 18 L~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~ 97 (115)
T 3k74_B 18 LSCAASGFTFNNYWMYWVRRAPGKGLEWVSMINPGGIITKYAESVKGRFTISRDNAKNTLYLQMNSLTSEDTAVYYCAKD 97 (115)
T ss_dssp EEEEECSSCGGGSCEEEEEECTTCCEEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEES
T ss_pred EEEEEeCccccCCEEEEEEECCCCCeEEEEEEECCCCceeecccccccEEEEEcCCCCEEEEEECCCChHhCEEEEEEEE
Confidence 579998653 68999996432 222 21 111 1 1 1247999887555578999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 98 ~ 98 (115)
T 3k74_B 98 W 98 (115)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=69.93 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=52.2
Q ss_pred CceEEecCC-CcEEEEEecCCe-e--EEec-ceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH-I--LTTN-IYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~-~--~~~~-~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|.|.+.+.+ +.|.|+|.+++. + +... ... .....||.+.. .....+|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 155 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~ 232 (247)
T 2ghw_B 155 LSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG--SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTF 232 (247)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC--SSSEEEEEECSCCGGGCEEEEEEECSSSSCEE
T ss_pred EEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec--CCCeEEEEECcCCHHHCEEEEEEEccCCCceE
Confidence 689999999 999999853222 1 1111 111 11246887764 3457889999999999999999995432 23
Q ss_pred eEEEEEEEE
Q psy3125 73 NMAIMLNVD 81 (163)
Q Consensus 73 ~~~~~l~V~ 81 (163)
...+.|.|.
T Consensus 233 g~~t~l~V~ 241 (247)
T 2ghw_B 233 GQGTKVEVK 241 (247)
T ss_dssp CCCEEEEEC
T ss_pred cCCEEEEEC
Confidence 345556664
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-09 Score=62.25 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=52.3
Q ss_pred CCCceEeeCCCeEEEecCCC-CceeEEEEeCCCeE----------EEecCCCCceEEEEecccCcCCCeeEEEEcCCCCC
Q psy3125 83 RGRGARLSAGPLLNFAFPDL-LTTNIYTYTGDARF----------SVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 151 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~ 151 (163)
.+....+..|..+.+.|... ....+.|++++..+ .+.. ......|.|.+++.+|+|.|+|.|.+
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n--- 88 (101)
T 2edk_A 14 PLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKK--DGKRHILIFSDVVQEDRGRYQVITNG--- 88 (101)
T ss_dssp CCCCEEEESSCCCBCCEEESCSSCCCEEEESSCBCCCSCCSSCCCEEEE--CSSEEEEECSSCCGGGCSBEEEECSS---
T ss_pred cCCceEEcCCCCEEEEEEEeCCCCEEEEEECCEECCCCCCcceeEEEEE--CCCEEEEEECCCChhhCEEEEEEEcC---
Confidence 34456777888888888632 12678899876533 2221 23356799999999999999999932
Q ss_pred ccEEEEEEEecC
Q psy3125 152 MNMAIMLNVDGK 163 (163)
Q Consensus 152 ~~~~~~L~V~~~ 163 (163)
.+..+.|.|.++
T Consensus 89 ~~~~~~l~V~~~ 100 (101)
T 2edk_A 89 GQCEAELIVEEK 100 (101)
T ss_dssp CEECCBEEEECC
T ss_pred CcEEEEEEEeCC
Confidence 445667777653
|
| >3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-08 Score=65.13 Aligned_cols=69 Identities=17% Similarity=0.436 Sum_probs=47.6
Q ss_pred CceEEecCC-CcEEEEEecCCe-------eEEecce---E-ec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH-------ILTTNIY---T-YT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~-------~~~~~~~---~-~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|.|.+.... ..|.|+|+..+. ++..... . +. ..+||.+..+. .+.++|.|.+++.+|+|.|.|
T Consensus 29 L~C~~s~~~~~~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~~-~~~~sL~I~~vq~eDsG~YyC 107 (166)
T 3dmm_C 29 LVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT-NNKYVLTLNKFSKENEGYYFC 107 (166)
T ss_dssp EEEEEESSSCCEEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECST-TTEEEEEESSCCTTTCEEEEE
T ss_pred EEEEEeCCCCceEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcCC-CCEEEEEECCCChhhCEEEEE
Confidence 579998555 889999864321 2221111 1 11 25789888643 445999999999999999999
Q ss_pred EeeCCC
Q psy3125 65 QVNTEP 70 (163)
Q Consensus 65 ~~~~~~ 70 (163)
.+....
T Consensus 108 a~~~~~ 113 (166)
T 3dmm_C 108 SVISNS 113 (166)
T ss_dssp EEESSS
T ss_pred EECCCC
Confidence 996543
|
| >2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=61.07 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred eEeeCCCeEEEecCCCC--ceeEEEEeCCCe-----E---------EEecC-CCC-----ceEEEEecccCcCCCeeEEE
Q psy3125 87 ARLSAGPLLNFAFPDLL--TTNIYTYTGDAR-----F---------SVIHP-QNS-----DEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~---------~~~~~-~~~-----~~~~L~i~~v~~~D~G~Y~C 144 (163)
+.+..|..+.+.|...+ ...+.|++.... + ..... ..+ ...+|.|++++.+|+|.|+|
T Consensus 10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc 89 (111)
T 2qsq_A 10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTL 89 (111)
T ss_dssp SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEE
Confidence 45677888888886432 345788776421 0 11100 011 13469999999999999999
Q ss_pred Ec-CCCC-CccEEEEEEEec
Q psy3125 145 QV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~-~~~~~~~L~V~~ 162 (163)
++ +..+ .....+.|.|..
T Consensus 90 ~v~~~~~~~~~~~~~L~V~~ 109 (111)
T 2qsq_A 90 HVIKSDLVNEEATGQFRVYP 109 (111)
T ss_dssp EEEETTSCCEEEEEEEEEEC
T ss_pred EEEeCCCcEEEEEEEEEEec
Confidence 99 6544 467788888864
|
| >2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=65.85 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=47.4
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEe--cce-----EecCC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTT--NIY-----TYTGD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~--~~~-----~~~~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.... ..|.|.+ ...+... +.. ....+ +|..+. ..+++|.|.|++.+|+|.|.|++.
T Consensus 19 L~c~~~~~~~~~~i~W~~--~~~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~----~~~~SL~I~nl~~~DsG~Y~c~i~ 92 (111)
T 2pkd_A 19 FPVNIQEPRQVKIIAWTS--KTSVAYVTPGDSETAPVVTVTHRNYYERIHAL----GPNYNLVISDLRMEDAGDYKADIN 92 (111)
T ss_dssp ECCCCCTTCCEEEEEEES--SSEEEEEECCCSSSCCEEEECSGGGTTCEEEC----TTTCCEEECSCCGGGCEEEEEEEE
T ss_pred EeCccCCCCeeeEEEEec--CCEEEEEECCCCCCcceeEEeCCCcCCcEEEe----CCCEEEEECCCCHHHCEEEEEEEE
Confidence 567766423 6889984 2222211 111 11122 455554 247889999999999999999995
Q ss_pred CCC---CeeEEEEEEEEc
Q psy3125 68 TEP---KMNMAIMLNVDD 82 (163)
Q Consensus 68 ~~~---~~~~~~~l~V~~ 82 (163)
... .....+.|.|.+
T Consensus 93 ~~~~~~~~~~~~~L~V~~ 110 (111)
T 2pkd_A 93 TQADPYTTTKRYNLQIYR 110 (111)
T ss_dssp ESSTTSEEEEEEEEEEEC
T ss_pred eCCCCceEEEEEEEEEEc
Confidence 432 245677888864
|
| >3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=66.57 Aligned_cols=143 Identities=12% Similarity=0.139 Sum_probs=79.8
Q ss_pred CceEEecCC-CcEEEEEecCC---eeE-Eec-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCe
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HIL-TTN-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~-~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~ 72 (163)
|.|.+.+.. ..+.|+|+..+ ..+ ... .......+||.+..+...+.++|.|.+++.+|+|.|.|.+... ...
T Consensus 20 L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~f 99 (200)
T 3rgv_A 20 INCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRF 99 (200)
T ss_dssp ECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCCCC
T ss_pred EEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCccccc
Confidence 579999876 88999996432 222 211 1111125799988654567899999999999999999999431 122
Q ss_pred eEEEEEEEEcC--CCceEee----CCCeEEEecCC---CCceeEEEEeCCCeEEE-----ecCCCCceEEEEecccCcCC
Q psy3125 73 NMAIMLNVDDR--GRGARLS----AGPLLNFAFPD---LLTTNIYTYTGDARFSV-----IHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 73 ~~~~~l~V~~~--~~~~~v~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D 138 (163)
...+.|.|... ++.+.|. ......+.|.. .+...+.|...+..+.. ..+.....+.+ .+.-.+
T Consensus 100 G~GT~L~V~~~~~~~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~~t~~~~~~~~~~~~~---~~~w~~ 176 (200)
T 3rgv_A 100 GTGTKLQVVPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNS---AVAWSN 176 (200)
T ss_dssp CCCEEEEEECCCSSCCCEEEEEEESSSSSCEEEEEESCCTTCCCCCCSSTTCEECCCEEEEEGGGTEEEEE---EEEECS
T ss_pred CcCEEEEEeCCCCCCCCeEEEccCCCCCceEEEEcccccCCeEeEeccCCcEEeecceEEccccccccccc---eEEecC
Confidence 34456777753 2222221 11113344521 12455666666554321 11111112222 224466
Q ss_pred CeeEEEEc
Q psy3125 139 AGIYECQV 146 (163)
Q Consensus 139 ~G~Y~C~a 146 (163)
-+.|.|.+
T Consensus 177 ~~~~~c~~ 184 (200)
T 3rgv_A 177 KSDFACAN 184 (200)
T ss_dssp CSSCCTTT
T ss_pred CCceEeee
Confidence 67788877
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-07 Score=65.21 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred CceEEecC-C----CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGL-G----RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~-~----~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+- | ..++|+| ++..+ .....+|.|..+...|+|.|+|++ +..+....
T Consensus 22 LTatVaGGkP~pspyTYqWyK--DG~~I-------------------sGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~t 80 (304)
T 3shs_A 22 LTATVAGDEPLPSNLTYTWTK--DDQPH-------------------ENNTATLTVADATSENAGSYKVTVQDTDTMTSV 80 (304)
T ss_dssp EEEEEEESSSCCCCEEEEEEE--TTEEC-------------------SCCSSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred EEEEecCCCCCCCCceEEEEE--CCccc-------------------cCCcceEEeeeccccCCeEEEEEEEECCCCeee
Confidence 56887754 3 4799998 32211 112346999999999999999999 43332221
Q ss_pred EEEEEEEcC---------CCceEeeCCCeEEEecCC-----CC-----ceeEEEEeCCCeEEEecCCCCceEEEEecccC
Q psy3125 75 AIMLNVDDR---------GRGARLSAGPLLNFAFPD-----LL-----TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ 135 (163)
Q Consensus 75 ~~~l~V~~~---------~~~~~v~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 135 (163)
...+.|... +..+.+..+..+.+.... .+ .....|++++..+ .... .|++....
T Consensus 81 Ss~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~I--sgAq-----~lT~sS~T 153 (304)
T 3shs_A 81 ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--DTTQ-----DITIQEFT 153 (304)
T ss_dssp ECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEE--ESSS-----EEEECSCC
T ss_pred eeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEc--cCcc-----ccceeeEE
Confidence 111222221 222333344444444321 11 3578898887633 2222 38888899
Q ss_pred cCCCeeEEEEc-CCCC
Q psy3125 136 KRDAGIYECQV-NTEP 150 (163)
Q Consensus 136 ~~D~G~Y~C~a-~~~~ 150 (163)
..++|.|.|.+ +..+
T Consensus 154 ateaG~YtV~VTn~~~ 169 (304)
T 3shs_A 154 ADKNGVYTVKVWGESE 169 (304)
T ss_dssp GGGCEEEEEEEESSSG
T ss_pred ecCCeEEEEEEEcCCC
Confidence 99999999999 6654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 163 | ||||
| d1ncna_ | 110 | b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human | 3e-07 | |
| d1ncna_ | 110 | b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human | 7e-07 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 5e-06 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 9e-05 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 1e-04 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 5e-04 |
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 3e-07
Identities = 9/64 (14%), Positives = 25/64 (39%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73
+ + +++ +SD W +++ Q +D G+Y+C ++ +
Sbjct: 36 QENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTG 95
Query: 74 MAIM 77
M +
Sbjct: 96 MIRI 99
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 7e-07
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
+++ +SD W +++ Q +D G+Y+C ++ + M +
Sbjct: 55 HSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 5e-06
Identities = 9/66 (13%), Positives = 22/66 (33%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71
+ W +++ + + + + ++ ++ I + D G YEC V K
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
Query: 72 MNMAIM 77
Sbjct: 90 DAFKRE 95
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 9e-05
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
L + + ++ ++ I + D G YEC V K
Sbjct: 40 LTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 37.7 bits (86), Expect = 1e-04
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 1 MACTVMGLGRPVSWMRKRDLHI---LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
C V +P K + Y + + ++ + + + I
Sbjct: 25 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE 84
Query: 58 DAGIYECQV-NTEPKMNMAIMLNV 80
DAG Y C N+ + L V
Sbjct: 85 DAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.4 bits (81), Expect = 5e-04
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE------WNMKIDYAQKRDAGIYECQ 65
K + + I + ++ + S ++ +D G+Y
Sbjct: 30 AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 66 VNTEP 70
+ E
Sbjct: 90 MTDEN 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.5 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.47 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.46 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.46 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.46 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.45 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.44 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.41 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.39 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.38 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.37 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.37 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.36 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.36 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.35 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.35 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.34 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.34 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.34 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.34 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.32 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.32 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.32 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.31 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.31 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.28 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.27 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.26 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.26 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.26 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.25 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.23 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.23 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.23 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.22 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.22 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.22 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.21 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.21 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.21 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.2 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.2 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.2 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.18 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.17 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.17 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.17 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.17 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.16 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.16 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.15 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.14 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.14 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.14 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.13 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.13 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.13 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.13 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.1 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 99.1 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.1 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 99.1 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.1 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.09 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.07 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.07 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.07 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.07 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 99.07 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 99.06 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.06 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.06 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 99.05 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.05 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.05 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.05 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 99.05 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.04 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.04 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.03 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.02 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.02 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 99.01 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.01 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.01 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 99.01 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.0 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 98.99 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 98.97 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 98.97 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.97 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.97 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.97 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 98.97 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 98.96 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 98.94 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 98.93 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 98.93 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.91 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.91 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 98.9 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.9 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.89 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 98.89 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.89 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.87 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.87 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 98.87 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.86 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 98.86 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.85 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.85 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.83 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.82 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 98.82 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.82 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.82 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.81 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.81 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.81 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.79 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.79 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.77 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.77 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.77 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.76 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 98.75 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.74 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 98.73 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.73 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.71 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.71 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.7 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.7 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.7 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.7 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.7 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.69 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.68 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.68 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.68 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.67 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.67 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.67 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.67 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 98.67 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.66 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.66 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.66 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.65 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.65 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.65 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.65 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.65 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.64 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 98.64 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.64 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.64 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.64 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.63 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.63 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.63 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.63 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.63 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.63 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.63 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.63 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.62 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.62 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.62 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 98.62 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.62 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.61 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.61 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.61 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.61 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 98.61 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.61 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.61 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.61 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.61 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.61 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.6 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.6 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 98.59 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.59 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.58 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.58 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.58 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.57 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.57 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.57 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.57 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.56 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.56 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 98.56 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 98.56 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.55 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.55 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.55 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.54 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.54 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.54 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.54 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 98.54 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.53 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.53 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.53 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.53 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.53 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.52 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.52 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.52 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.51 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.51 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 98.51 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.5 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.5 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.5 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.49 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.49 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 98.49 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.49 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.49 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.49 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.48 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.47 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.47 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.47 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.46 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.46 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.46 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.46 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.46 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.45 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 98.45 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.45 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.45 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.44 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.44 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 98.44 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.42 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.42 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.42 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.41 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.41 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.4 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.4 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.39 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.39 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.39 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.39 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.39 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.39 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.39 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.38 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.35 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.34 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.33 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.33 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.32 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.32 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.32 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.32 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.31 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.31 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.3 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.29 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 98.29 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.29 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.26 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.26 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.26 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.25 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.24 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.23 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.22 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.21 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.2 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.19 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.18 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.16 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.14 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.13 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.09 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.09 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.08 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.07 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.07 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.07 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.04 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.04 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.03 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.01 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.01 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.01 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.0 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.0 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.0 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.99 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.97 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.96 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.95 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.95 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.94 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.91 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.91 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.91 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.9 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.88 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.87 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.86 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.86 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.85 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.85 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.85 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.84 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.83 | |
| d1hnfa1 | 101 | CD2, first domain {Human (Homo sapiens) [TaxId: 96 | 97.83 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.82 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.82 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.8 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.79 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.77 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.77 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.76 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.76 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.76 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.75 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.75 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.74 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.72 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.71 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.69 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.69 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.68 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.68 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.66 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.66 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.65 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.65 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.63 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.63 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.62 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 97.61 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.61 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.6 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.59 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.57 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.57 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.56 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.56 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.56 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.55 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.54 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.54 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.53 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.52 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.52 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.51 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.51 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.5 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.5 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.49 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.48 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.48 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.47 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.47 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.46 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.45 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.44 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.43 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.41 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.41 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.4 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.39 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.36 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.31 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.3 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.28 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.21 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.15 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.12 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.09 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.04 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.01 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 96.98 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 96.96 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.95 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 96.92 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 96.84 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 96.83 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 96.82 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 96.82 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 96.67 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 96.64 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 96.57 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 96.57 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 96.57 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 96.42 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 96.4 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 96.36 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.35 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.33 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 96.32 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 96.31 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 96.3 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 96.29 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.28 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.26 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 96.17 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 96.09 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 96.08 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 96.04 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 95.96 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 95.93 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 95.86 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 95.83 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 95.8 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 95.67 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 95.66 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 95.63 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 95.58 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 95.48 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 95.33 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 95.32 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 95.29 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 95.28 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 95.1 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 94.97 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 94.84 | |
| d1sy6a1 | 81 | CD3 gamma chain ectodomain fragment {Human (Homo s | 94.82 | |
| d1hnfa1 | 101 | CD2, first domain {Human (Homo sapiens) [TaxId: 96 | 94.82 | |
| d3d85d1 | 87 | The p40 domain of interleukin-12 (IL-12 beta chain | 94.57 | |
| d3d85d1 | 87 | The p40 domain of interleukin-12 (IL-12 beta chain | 94.49 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 94.42 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 94.23 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 94.17 | |
| d1pfca_ | 111 | Immunoglobulin heavy chain gamma constant domain 3 | 93.91 | |
| d1jbja1 | 86 | CD3 gamma chain ectodomain fragment {Mouse (Mus mu | 93.88 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 93.81 | |
| d1ow0a1 | 101 | Immunoglobulin heavy chain alpha constant domain 2 | 93.73 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 93.53 | |
| d1l6xa1 | 105 | Immunoglobulin heavy chain gamma constant domain 2 | 92.82 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 91.79 | |
| d1sy6a1 | 81 | CD3 gamma chain ectodomain fragment {Human (Homo s | 88.53 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 86.84 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.5e-14 Score=84.90 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=57.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++.. +....|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 20 l~C~v~g~p~p~v~W~k--~~~~-------l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 88 (101)
T d2cqva1 20 LFGKVTGTQPITCTWMK--FRKQ-------IQESEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 88 (101)
T ss_dssp EEEEEESSSSCEEEEEE--SSSB-------CCCSSSEEEEE--CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred EEEEEEecCCCEEEEEe--Ccee-------eccCCcEEEEE--ecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 3222 23456777765 335678999999999999999999 446677788889
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|.+.+.
T Consensus 89 ~V~~~P~ 95 (101)
T d2cqva1 89 TVVDKPD 95 (101)
T ss_dssp EEECSCS
T ss_pred EEEecCC
Confidence 9987653
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.50 E-value=1.9e-14 Score=84.76 Aligned_cols=73 Identities=21% Similarity=0.406 Sum_probs=56.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ..+.|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 21 l~C~~~g~P~p~v~W~~--~~~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 89 (97)
T d1koaa1 21 FYCRVIASSPPVVTWHK--DDREL-------KQSVKYMKRY--NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89 (97)
T ss_dssp EEEEEECSSCCEEEEEE--TTEEC-------CSBTTBBCCC--STTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEcCCCEEEEEE--eeecc-------ceeeEEEEEe--cCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 33332 3445666554 346788999999999999999999 556667777888
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|...+
T Consensus 90 ~V~~~~ 95 (97)
T d1koaa1 90 NVTRHS 95 (97)
T ss_dssp EEECSC
T ss_pred EEeecC
Confidence 887653
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.47 E-value=1.4e-13 Score=81.76 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=54.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++. .+..+.++.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 28 l~C~~~g~P~p~v~W~k--~~~-------~i~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 97 (102)
T d1fhga_ 28 FDCKVEGYPDPEVMWFK--DDN-------PVKESRHFQIDYD-EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97 (102)
T ss_dssp EEEEEEEESCCEEEEEE--TTE-------ECCCSSSEEEEEC-TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeccCCeEEEEe--eec-------cccceeeEeEEEe-cCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEE
Confidence 689999999 9999998 332 2334567776542 235788999999999999999999 556667777777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 98 ~V~ 100 (102)
T d1fhga_ 98 LVE 100 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.46 E-value=1.4e-13 Score=81.13 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=53.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| +...+ ..+.++..... ..+..+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 24 l~c~v~g~P~p~v~W~k--~~~~i-------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L 93 (98)
T d1g1ca_ 24 FRVRVVGKPDPECEWYK--NGVKI-------ERSDRIYWYWP-EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93 (98)
T ss_dssp EEEEEEEESCCEEEEEE--TTEEC-------CCCSSEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCeEEEEe--CceEE-------eeeeeeEEEec-cceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEE
Confidence 689999999 9999998 33222 23445443321 235778999999999999999999 556677777888
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 94 ~V~~ 97 (98)
T d1g1ca_ 94 LVQA 97 (98)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.46 E-value=3.1e-14 Score=82.88 Aligned_cols=70 Identities=27% Similarity=0.453 Sum_probs=52.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ..+.++.+.. .....+|.|.+++.+|+|.|.|.+ |..+..+..+.|
T Consensus 19 l~C~~~g~P~p~v~W~~--~g~~l-------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 87 (91)
T d1tnna_ 19 FSCDTDGEPVPTVTWLR--KGQVL-------STSARHQVTT--TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 87 (91)
T ss_dssp EEEECCCSSCCCCEEES--SSSTT-------CSSSSCEEEE--CSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred EEEEEEEEeCCeEEEEE--eeccc-------ccccceeeee--ecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999997 22222 2345665554 235788999999999999999999 445666667777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 88 ~V~ 90 (91)
T d1tnna_ 88 TIQ 90 (91)
T ss_dssp ECC
T ss_pred EEE
Confidence 664
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.6e-13 Score=79.73 Aligned_cols=72 Identities=19% Similarity=0.418 Sum_probs=50.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| +...+ ....++.+..........|.|.+++.+|+|.|+|.+.+ .+. .+..+.
T Consensus 16 l~C~v~g~p~p~v~W~k--~g~~l-------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~ 86 (91)
T d1rhfa1 16 LNCSVEGMEEPDIQWVK--DGAVV-------QNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 86 (91)
T ss_dssp EEEEEESCSSCCEEEEE--TTEEC-------CSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEE
T ss_pred EEEEEEecCCceEEEEE--eeccc-------ccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEE
Confidence 689999999 9999998 33332 22334444332233466899999999999999999954 443 456777
Q ss_pred EEEE
Q psy3125 78 LNVD 81 (163)
Q Consensus 78 l~V~ 81 (163)
|.|.
T Consensus 87 l~V~ 90 (91)
T d1rhfa1 87 LTVE 90 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.45 E-value=1.3e-13 Score=79.86 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=51.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....|+.+.. .+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 l~C~~~g~P~p~v~W~k--~g~~i-------~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (89)
T d1cs6a4 21 WSCVASGKPRPAVRWLR--DGQPL-------ASQNRIEVSG------GELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85 (89)
T ss_dssp EECEEEEESCCEEEEEE--TTEEC-------CCCSSEEEET------TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEcCCEEEEEE--eeccc-------cccceeeeee------eeEEEEeecccCCEEEEEEEEeCCCEEEEEEEE
Confidence 689999999 9999998 33322 3456776653 36999999999999999999 556666777778
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 86 ~V~ 88 (89)
T d1cs6a4 86 TVQ 88 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.44 E-value=7.5e-14 Score=81.51 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|. +..+ ..+.++.+... ....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 22 l~c~~~g~P~p~v~W~~~-~~~i--------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 90 (93)
T d1wiua_ 22 LEVDFIGAPDPTATWTVG-DSGA--------ALAPELLVDAK--SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EEEEEECCSSCEEEEECS-SSSC--------BCSTTSEEEEE--TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCeEEEEee-eeec--------eeeeeeeeccc--ccceeeccccccccccEEEEEEEEECCCEEEEEEEE
Confidence 689999999 99999982 2222 23455555542 35778999999999999999999 556666777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 91 ~V 92 (93)
T d1wiua_ 91 IV 92 (93)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=2.5e-13 Score=79.88 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=48.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.+.| +.|.|+| ++..+. .+++..+.........+|.|.+++.+|+|.|+|.+.+ .+. .+..+.
T Consensus 23 l~C~~~g~P~~~v~W~k--~g~~i~-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~ 93 (97)
T d1biha3 23 IYCMYGSNPMGYPNYFK--NGKDVN-------GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 93 (97)
T ss_dssp EEEEEECSSCCCCEEEE--TTEECC-------CCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred EEEEEEEecCCEEEEEE--eeeecc-------ccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEE
Confidence 689999999 9999998 332221 2222222221223456899999999999999999954 444 345677
Q ss_pred EEEE
Q psy3125 78 LNVD 81 (163)
Q Consensus 78 l~V~ 81 (163)
|.|.
T Consensus 94 L~Vl 97 (97)
T d1biha3 94 LTVV 97 (97)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8774
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=1.3e-13 Score=81.57 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=50.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+..... ...+.... ....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 25 l~C~~~g~P~p~i~W~~--~g~~i~~~~~---~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 95 (100)
T d1qz1a3 25 LVCDADGFPEPTMSWTK--DGEPIENEEE---DDEKHIFS----DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95 (100)
T ss_dssp EEEEEEEESCCEEEEEE--TTEECCCC-----CCSSEEEC----TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEecCCEEEEEe--CCcccccccc---cceeEEee----cCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 4333321110 01122222 23568999999999999999999 556667777888
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 96 ~V~~ 99 (100)
T d1qz1a3 96 KVFA 99 (100)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.39 E-value=5.8e-13 Score=77.02 Aligned_cols=64 Identities=25% Similarity=0.478 Sum_probs=48.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ .++|+.+.. .+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 23 l~C~~~g~P~p~v~W~~--~~~~i--------~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 86 (89)
T d1biha4 23 IPCKVTGLPAPNVVWSH--NAKPL--------SGGRATVTD------SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86 (89)
T ss_dssp EECEEEEESCCCCEEEE--TTEEC--------CSSSEEEET------TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCEEEEEe--CCccC--------ccccEEEee------eeEEECCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 33332 345676653 24999999999999999999 555566666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 87 ~V 88 (89)
T d1biha4 87 QV 88 (89)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.9e-13 Score=82.58 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=52.2
Q ss_pred CceEEecCC----CcEEEEEecCCeeEEecceEecCCCeEEEec----cCCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.|.| +.|.|+|.+...... ....++.+.. .......+|.|.+++.+|+|.|+|.+ |..+.
T Consensus 20 l~C~v~g~p~~~~p~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 93 (113)
T d2dava1 20 FIAKVKAEDLLRKPTIKWFKGKWMDLAS------KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 93 (113)
T ss_dssp EEEEEECCCSSSCCEEEEEESSSCCHHH------HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred EEEEEccCCCCCCCEEEEEEeecccccc------ccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCE
Confidence 689999987 689999842211111 0112222211 11123567999999999999999999 45667
Q ss_pred eeEEEEEEEEcCC
Q psy3125 72 MNMAIMLNVDDRG 84 (163)
Q Consensus 72 ~~~~~~l~V~~~~ 84 (163)
.+..+.|.|.+++
T Consensus 94 ~~~~~~L~V~~~~ 106 (113)
T d2dava1 94 DSCSFDLEVHEST 106 (113)
T ss_dssp EEECCEEEEECCC
T ss_pred EEEEEEEEEEcCC
Confidence 7888899998664
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.6e-13 Score=79.13 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=52.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEe--ccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVI--HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.++|.| +.|.|+| ++..+. ...++.+. .........|.|.+++.+|+|.|+|.+ |..+..+..+
T Consensus 22 i~~~v~G~P~P~v~W~~--n~~~i~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 92 (105)
T d1wwca_ 22 IEFVVRGNPPPTLHWLH--NGQPLR-------ESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 92 (105)
T ss_dssp EEEEEECSSCCEEEEEE--TTEECC-------CSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCeEEEEe--CccccC-------CCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEE
Confidence 468999999 9999998 333332 22333222 211223567999999999999999999 5566777777
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..++
T Consensus 93 ~v~V~~~P 100 (105)
T d1wwca_ 93 NGHFLKEP 100 (105)
T ss_dssp EECCSCCC
T ss_pred EEEEEeCC
Confidence 77776553
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=1.5e-12 Score=76.38 Aligned_cols=73 Identities=25% Similarity=0.477 Sum_probs=51.5
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCC-eeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~-~~~~~ 76 (163)
|.|.+.+.| +.|.|+|.++..+. ...+|+.+... .....+|.|.+++.+|+|.|+|.+. ..+. .+..+
T Consensus 20 l~C~v~g~p~~~~v~W~~~~g~~~~-------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv 91 (97)
T d1epfa1 20 FLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV 91 (97)
T ss_dssp EEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEeccCCCEEEEEEeeeeeee-------eccccEEEEee-cCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEE
Confidence 689999987 68999974433222 23456666542 2356789999999999999999994 4443 34566
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|+|.
T Consensus 92 ~l~V~ 96 (97)
T d1epfa1 92 NVKIF 96 (97)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.2e-13 Score=81.06 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=54.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeE--------------------EecceEecCCCeEEEeccCCCCeEEEEEcccCcCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHIL--------------------TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~--------------------~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~ 59 (163)
|.|.+.|.| +.|.|+|.+..... ..........+|+.+.. ..+..+|.|.+++.+|+
T Consensus 29 L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~ 106 (130)
T d1gxea_ 29 LDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET--TKDRSIFTVEGAEKEDE 106 (130)
T ss_dssp CEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEE--ETTEEEEECSCCCTTTC
T ss_pred EEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEE--CCCEEEEEECcCChhcC
Confidence 789999999 99999984211000 00011112234566654 23578899999999999
Q ss_pred eeEEEEe-eCCCCeeEEEEEEEE
Q psy3125 60 GIYECQV-NTEPKMNMAIMLNVD 81 (163)
Q Consensus 60 G~Y~C~~-~~~~~~~~~~~l~V~ 81 (163)
|.|+|.+ |..+.....+.|.|.
T Consensus 107 G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 107 GVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEEEE
Confidence 9999999 556677777788775
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.36 E-value=5.6e-13 Score=79.82 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=49.1
Q ss_pred CceEEecCC-CcEEEEEecCCe--eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH--ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.|.| +.|.|+|..... .+...........+.............|.|.+++.+|+|.|+|.| |..+.....+
T Consensus 25 l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 104 (109)
T d2fdbp2 25 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 104 (109)
T ss_dssp EEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEE
Confidence 689999999 999999843211 111011000000011111111234678999999999999999999 5567777788
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 105 ~L~Vl 109 (109)
T d2fdbp2 105 WLTVL 109 (109)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88773
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.9e-12 Score=76.13 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=49.5
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~ 76 (163)
|.|.+.+.| |.|.|+|.+....... ...+.............|.|.+++.+|+|.|+|.+.+ .+.. +..+
T Consensus 23 L~C~v~g~p~~P~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~ 96 (104)
T d2aw2a1 23 LECPVKYCANRPHVTWCKLNGTTCVKL------EDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHST 96 (104)
T ss_dssp EEEEEECSSSCCEEEEEEECSSCEEEC------CSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred EEEEEEeeCCCCEEEEEecCccccccc------ceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEE
Confidence 689999987 7999998543322211 1112222222223466799999999999999999954 4443 4467
Q ss_pred EEEEEc
Q psy3125 77 MLNVDD 82 (163)
Q Consensus 77 ~l~V~~ 82 (163)
.|.|.+
T Consensus 97 ~l~V~e 102 (104)
T d2aw2a1 97 TLYVTD 102 (104)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 777764
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.1e-13 Score=81.26 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=51.5
Q ss_pred CceEEecCC----CcEEEEEecCCeeEEecceEecCCCeEEEec----cCCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| +.|.|+|.+ ...+... ...++.... .......+|.|.+++.+|+|.|+|.+ |..+.
T Consensus 24 l~C~v~g~p~~~~p~v~W~k~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 97 (110)
T d2avga1 24 FSARVAGASLLKPPVVKWFKGK-WVDLSSK-----VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF 97 (110)
T ss_dssp EEEEEECCSCSSSCEEEEECST-TCCSTTT-----CSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEE
T ss_pred EEEeecCCCCCCCCEEEEEeCc-eeeeccc-----CCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCe
Confidence 689999988 579999732 1111100 111222211 11123567999999999999999999 55677
Q ss_pred eeEEEEEEEEcC
Q psy3125 72 MNMAIMLNVDDR 83 (163)
Q Consensus 72 ~~~~~~l~V~~~ 83 (163)
.+..++|.|.++
T Consensus 98 ~~~~~~L~V~~~ 109 (110)
T d2avga1 98 DCSNFNLTVHEA 109 (110)
T ss_dssp EEEEEEEEEESC
T ss_pred EEEEEEEEEEec
Confidence 888899998865
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.34 E-value=7.5e-13 Score=76.84 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.++... .++ ...+.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 25 l~C~~~g~P~p~i~W~k~~~~~~-----------~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 87 (91)
T d1cs6a3 25 LECFAFGNPVPQIKWRKLDGSQT-----------SKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87 (91)
T ss_dssp EECEEEEESCCEEEEEECCSCCS-----------CCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEccCCEEEEEecccccc-----------eEe------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998432210 010 123457999999999999999999 555666777777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 88 ~V~ 90 (91)
T d1cs6a3 88 IIH 90 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-12 Score=77.28 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=52.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEec--c-CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIH--P-QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
+.|.+.|.| +.|.|+| ++..+. .+.++.+.. . ......+|.|.+++.+|+|.|+|.+ |..+..+..
T Consensus 21 i~~~v~G~P~P~i~W~~--~g~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 91 (103)
T d1wwbx_ 21 IPFTVKGNPKPALQWFY--NGAILN-------ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91 (103)
T ss_dssp EEEEEECSSCCEEEEEE--TTEEEC-------CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEeCCCEEEEEE--CCEEee-------eeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence 469999999 9999998 444433 223332221 1 1122467999999999999999999 556677777
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|...|
T Consensus 92 ~~v~V~~~P 100 (103)
T d1wwbx_ 92 ISAHFMGWP 100 (103)
T ss_dssp EEECCSCCC
T ss_pred EEEEEEeCC
Confidence 777776654
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.34 E-value=1.4e-13 Score=81.00 Aligned_cols=70 Identities=20% Similarity=0.429 Sum_probs=48.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.... ....+... ....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 25 l~C~~~g~P~p~i~W~k--ng~~l~~~~----~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 94 (97)
T d3dara1 25 FRCPAGGNPMPTMRWLK--NGKEFKQEH----RIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94 (97)
T ss_dssp EECCEEEESCCEEEEEE--TTEECCGGG----STTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeEECCCEEEEEE--CCEeccccC----ceeeEEEc----CCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 433332111 01112222 13567999999999999999999 555666777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 95 ~V 96 (97)
T d3dara1 95 DV 96 (97)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.1e-12 Score=74.76 Aligned_cols=67 Identities=15% Similarity=0.309 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|++.+.. ++ .+.... .....+|.|.+++.+|+|.|+|.+ +..+..+..+.|
T Consensus 21 l~C~~~g~p~p~i~W~~~~~~-~~---------~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v 86 (90)
T d1vcaa2 21 LTCSTTGCESPFFSWRTQIDS-PL---------NGKVTN----EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (90)
T ss_dssp EEEEEESCSSCEEEEEETTCC-CC---------SSEEEE----ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEeccCCCCceEEEEecCcc-ce---------eeeeee----ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence 689999999 99999984322 11 111111 124678999999999999999999 556667777777
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 87 ~V~ 89 (90)
T d1vcaa2 87 EIY 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.4e-12 Score=73.45 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-cc
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MN 153 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~ 153 (163)
|....+..|..+.+.|. ..+.+.+.|++++..+ .+..........|.|.+++++|+|.|+|.| |..|. .+
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S 82 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS 82 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence 34456777888889886 3456788898876532 222223334567999999999999999999 88786 47
Q ss_pred EEEEEEEec
Q psy3125 154 MAIMLNVDG 162 (163)
Q Consensus 154 ~~~~L~V~~ 162 (163)
..++|.|+|
T Consensus 83 ~~~~l~V~G 91 (91)
T d1rhfa1 83 QPVWLTVEG 91 (91)
T ss_dssp CCEEEEEEC
T ss_pred EEEEEEEEC
Confidence 899999987
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.8e-12 Score=74.03 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+.. +.. +..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 19 L~C~~~g~p~P~i~W~~~~~~-~~~--------------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v 77 (84)
T d2nxyb2 19 LTLESPPGSSPSVQCRSPRGK-NIQ--------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 77 (84)
T ss_dssp EEEECCTTCCCEEEEECTTCC-EEE--------------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeEcCCchheEEEeeccc-cee--------------------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence 689999999 99999973221 110 1335899999999999999999 556667777778
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|...
T Consensus 78 ~V~~~ 82 (84)
T d2nxyb2 78 VVLAF 82 (84)
T ss_dssp CEECC
T ss_pred EEEec
Confidence 77754
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.3e-12 Score=76.02 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=45.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| +...+.. ....++.... +.+|.|.+++.+|+|.|+|++.+ .........+
T Consensus 21 l~C~v~g~p~p~v~W~~--~~~~i~~-----~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i 88 (92)
T d1epfa2 21 IVCDVVSSLPPTIIWKH--KGRDVIL-----KKDVRFIVLS-----NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88 (92)
T ss_dssp ECCEEECSSCCEEEEEE--TTEEGGG-----GCCTTEEECT-----TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred EEEEEeecCCCeEEEEE--cCccccc-----ccceeeeeee-----eeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEE
Confidence 689999999 9999998 2222111 1122343332 23599999999999999999954 3444445555
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 89 ~Vi 91 (92)
T d1epfa2 89 QVI 91 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.2e-12 Score=76.37 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=51.2
Q ss_pred ceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEe--ccC---CCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 2 ACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVI--HPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 2 ~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~--~~~---~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
.|.++|.| +.|.|+| ++..+. .+.++... ... ......|.|.++..+|+|.|.|.+ |..+....
T Consensus 21 ~~~v~G~P~P~v~W~~--ng~~l~-------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~ 91 (107)
T d1he7a_ 21 PFSVDGQPAPSLRWLF--NGSVLN-------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91 (107)
T ss_dssp EEEECCSSCCEEEEEE--TTEECC-------CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEEecCCeEEEEE--eeeEcc-------CccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEE
Confidence 57999999 9999998 333332 22222221 111 112467999999999999999999 55667777
Q ss_pred EEEEEEEcCC
Q psy3125 75 AIMLNVDDRG 84 (163)
Q Consensus 75 ~~~l~V~~~~ 84 (163)
.+.|.|..+|
T Consensus 92 ~i~v~v~~~P 101 (107)
T d1he7a_ 92 SIMAAFMDNP 101 (107)
T ss_dssp EEEECCCSCT
T ss_pred EEEEEEEcCC
Confidence 7888877765
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4e-12 Score=73.55 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=61.5
Q ss_pred EEEcCCCceEeeCCCeEEEecC---CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
.+..+++...+..|..+.+.|. ..+.+.+.|.+.+..+.... .......|+|.+++.+|+|.|+|.| |..+..+.
T Consensus 5 ~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~ 83 (90)
T d1gsma1 5 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ-SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH 83 (90)
T ss_dssp EEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEE-EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeee-ccCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence 4455555677889999999995 24467899987765432111 1234567999999999999999999 88899999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
++.|.|
T Consensus 84 s~~l~V 89 (90)
T d1gsma1 84 TVQLLV 89 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999987
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.28 E-value=5.8e-12 Score=73.95 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=61.5
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++..+. ... .......|.|.++..+|+|.|+|.| |..|..+
T Consensus 10 ~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 88 (98)
T d1g1ca_ 10 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW-PEDNVCELVIRDVTGEDSASIMVKAINIAGETS 88 (98)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred CCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEe-ccceEEEEEeccCccccCEEEEEEEEECCcEEE
Confidence 344567788888999986 34567889998764322 111 1134567999999999999999999 9999999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|++|
T Consensus 89 ~~~~L~V~~k 98 (98)
T d1g1ca_ 89 SHAFLLVQAK 98 (98)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEEEC
Confidence 9999999986
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=5.6e-12 Score=72.90 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=47.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+ | +.|.|+| ++..+.. ....++.+.. ..+.++|.|.+++.+|+|.|+|.+.+ ....+.|.
T Consensus 20 l~C~v~~-p~~~v~W~k--~~~~~~~-----~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~a~l~ 86 (90)
T d1x44a1 20 LECEVSE-DDANVKWFK--NGEEIIP-----GPKSRYRIRV--EGKKHILIIEGATKADAAEYSVMTTG---GQSSAKLS 86 (90)
T ss_dssp EEEECSS-SSCCCEEEE--TTEECCC-----STTCSEEEEE--ETTEEEEEEEEECTTTCSEEEEEETT---EEEEEEEE
T ss_pred EEEEECC-CCceEEEEE--eecccCC-----CCCccEEEEE--eCCccEEEECccccccCEEEEEEEec---ceEEEEEE
Confidence 6899954 6 9999998 3322211 1223565554 34678999999999999999999954 34456676
Q ss_pred EEc
Q psy3125 80 VDD 82 (163)
Q Consensus 80 V~~ 82 (163)
|..
T Consensus 87 V~~ 89 (90)
T d1x44a1 87 VDL 89 (90)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.26 E-value=3.3e-12 Score=73.72 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+............|.|.++..+|+|.|+|.| |..|..+..+.|.
T Consensus 7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (89)
T d1cs6a4 7 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86 (89)
T ss_dssp CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEE
Confidence 4445677888999999963 455678999876533211111111235999999999999999999 9999999999999
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|+
T Consensus 87 V~ 88 (89)
T d1cs6a4 87 VQ 88 (89)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1e-11 Score=73.31 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=48.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEE--ecceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILT--TNIYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~--~~~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|.|.+.+.| +.|.|+|.+...... .+.... ....|.... +.+|.|.+++.+|+|.|+|.+ +..+.....
T Consensus 21 l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 94 (102)
T d1f97a1 21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS------SSGITFSSVTRKDNGEYTCMVSEEGGQNYGE 94 (102)
T ss_dssp EECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE------TTEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred EEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec------CCEEEEeECCccCCEEEEEEEEECCCCEEEE
Confidence 689999999 999999865443322 111111 112333332 346999999999999999999 445555544
Q ss_pred EEEEE
Q psy3125 76 IMLNV 80 (163)
Q Consensus 76 ~~l~V 80 (163)
+.|+|
T Consensus 95 ~~v~v 99 (102)
T d1f97a1 95 VSIHL 99 (102)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4e-11 Score=70.64 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=61.6
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 83 (101)
T d2cqva1 6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQ 83 (101)
T ss_dssp CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE--CSSEEEEEETTCCTTTCEEEEEEEECSSCEEE
T ss_pred eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE--ecceeEEEEeeCCcccCEEEEEEEEECCCEEE
Confidence 345567788888999986 345568899987653 33332 234567999999999999999999 9999999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
..+.|.|.++
T Consensus 84 ~~~~l~V~~~ 93 (101)
T d2cqva1 84 AQVNLTVVDK 93 (101)
T ss_dssp CCEEEEEECS
T ss_pred EEEEEEEEec
Confidence 9999999864
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.7e-11 Score=72.16 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=51.9
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.+.| + .+.|+|.+....... ......|+.+... .+..+|.|.++. .+|+|.|+|.+ |..+..+..+
T Consensus 22 l~C~v~g~P~p~~i~W~k~~~~~~~~~---~~~~~~~~~~~~~--~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~ 96 (101)
T d3b5ha1 22 LVCKSESVPPVTDWAWYKITDSEDKAL---MNGSESRFFVSSS--QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 96 (101)
T ss_dssp EEEECCCSSCCCEEEEEECCSSSCEEC---CTTGGGTEEEEEE--TTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEecCCeeEEEEEeccceeeeec---ccCCCceEEEEeC--CCEEEEEEeccccccCCEEEEEEEEECCCEEEEEE
Confidence 689999998 5 699998432211110 0112456766653 357789999998 57999999999 5566667777
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 97 ~L~V 100 (101)
T d3b5ha1 97 TLRV 100 (101)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.25 E-value=1.1e-11 Score=71.71 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=60.6
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
.+|....+..|..+.+.|.. .+.+.+.|++++..+ .+.. ......|.|.+++.+|+|.|+|.| |..|..
T Consensus 4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T d1tnna_ 4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT--TKYKSTFEISSVQASDEGNYSVVVENSEGKQ 81 (91)
T ss_dssp BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE--CSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee--ecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence 34556778889999999853 455688999876533 2222 234667999999999999999999 999999
Q ss_pred cEEEEEEEe
Q psy3125 153 NMAIMLNVD 161 (163)
Q Consensus 153 ~~~~~L~V~ 161 (163)
+..+.|.|+
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1tnna_ 82 EAEFTLTIQ 90 (91)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEEEE
Confidence 999999986
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=7.3e-12 Score=73.24 Aligned_cols=71 Identities=18% Similarity=0.408 Sum_probs=50.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l 78 (163)
|.|.+.+.++.|.|+| ++ ..+....++.+.. ...+|.|.+++.+|+|.|+|++.+ .+.. +..+.|
T Consensus 23 l~C~~~~~~~~v~W~~--~~-------~~l~~~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L 89 (96)
T d1l6za2 23 LTCLSNDIGANIQWLF--NS-------QSLQLTERMTLSQ----NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 89 (96)
T ss_dssp EEECCCCSSCEEEEEE--TT-------EECCCCTTEEEET----TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred EEEccCCCCCCEEEEE--ee-------eecccccceeccC----CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence 6799877569999998 32 2223456666654 245799999999999999999954 3332 456778
Q ss_pred EEEcCC
Q psy3125 79 NVDDRG 84 (163)
Q Consensus 79 ~V~~~~ 84 (163)
.|..+|
T Consensus 90 ~V~~~P 95 (96)
T d1l6za2 90 DIIFDP 95 (96)
T ss_dssp EECCSC
T ss_pred EEEcCC
Confidence 876553
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.8e-11 Score=69.74 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=58.7
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
..+..|..+.+.|. ..+.+.+.|+.++....... ..|.|.++..+|+|.|+|.| |..|..+..+.|.|.+
T Consensus 9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~------~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~ 81 (84)
T d2nxyb2 9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 81 (84)
T ss_dssp SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES------SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred eEEECCCeEEEEEEeEcCCchheEEEeecccceeee------eeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEe
Confidence 46778999999996 45678999998877665332 24999999999999999999 9999999999999976
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.23 E-value=1.2e-11 Score=71.85 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEE
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~ 155 (163)
+.....+..|..+.+.|. ..+.+.+.|++++..+..... .......|.|++++.+|+|.|+|.| |..|..+..
T Consensus 8 ~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 87 (93)
T d1wiua_ 8 ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI 87 (93)
T ss_dssp CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEE
Confidence 345567788888888885 455678899988764432111 1134567999999999999999999 999999999
Q ss_pred EEEEEe
Q psy3125 156 IMLNVD 161 (163)
Q Consensus 156 ~~L~V~ 161 (163)
+.|.|+
T Consensus 88 ~~l~V~ 93 (93)
T d1wiua_ 88 FEVIVQ 93 (93)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999985
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4e-12 Score=73.99 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=40.5
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 74 (163)
|.|.+.+.+ +.|.|+|.+ ..+ ....|..... +.+|.|.+++.+|+|.|+|.+.+....+.
T Consensus 26 L~C~~~g~~~~~~i~W~k~~-~~l--------~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~~~t~ 87 (93)
T d1n26a1 26 LTCPGVEPEDNATVHWVLRK-PAA--------GSHPSRWAGM-----GRRLLLRSVQLHDSGNYSCYRAGRPAGTV 87 (93)
T ss_dssp EECTTSCTTCCSEEEEEEEC-SSS--------SCCCEEEEEE-----SSEEEECSCCGGGCEEEEEESSSSCSCEE
T ss_pred EEEEeecCCCCceEEEEEcc-ccc--------cceeeEEecC-----CCEEEECCCChhcCEEEEEEECCccccEE
Confidence 679999876 589999832 222 1223333222 34699999999999999999965433333
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.22 E-value=5.9e-11 Score=70.00 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|.. .+.+.+.|++++. ++.+.. .......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 14 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 92 (102)
T d1fhga_ 14 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY-DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 92 (102)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE-CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred CCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEE-ecCceeeeEecCCCHHhCEEEEEEEEECCcEEE
Confidence 4445677889999999863 4556889998764 333322 2234677999999999999999999 9999999
Q ss_pred EEEEEEEe
Q psy3125 154 MAIMLNVD 161 (163)
Q Consensus 154 ~~~~L~V~ 161 (163)
.++.|.|+
T Consensus 93 ~~~~L~V~ 100 (102)
T d1fhga_ 93 CTAELLVE 100 (102)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999986
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.8e-11 Score=71.23 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=46.9
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V 80 (163)
|.|.+.+.++.|.|+| ++..+. ..+.++.+... .+..+|.|.++..+|+|.|+|.+.+ ....+.|.|
T Consensus 26 l~c~v~~p~~~v~W~k--~g~~i~------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~n---~~~s~~l~V 92 (94)
T d1pd6a_ 26 LTVELADHDAEVKWLK--NGQEIQ------MSGSKYIFESI--GAKRTLTISQCSLADDAAYQCVVGG---EKCSTELFV 92 (94)
T ss_dssp EEEECSSSSSCCEEEE--SSSEEC------CCSSSSEEEEE--TTEEEEEECSCSSSSCEEEEEEETT---EEECCEEEE
T ss_pred EEEEECCCCceEEEEE--cCccce------eeeeeEeeecc--CCeEEeecCCCCceecEEEEEEEee---EEEEEEEEE
Confidence 6799966339999998 322221 12345666652 3578999999999999999999944 234455665
Q ss_pred E
Q psy3125 81 D 81 (163)
Q Consensus 81 ~ 81 (163)
.
T Consensus 93 ~ 93 (94)
T d1pd6a_ 93 K 93 (94)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=7.1e-12 Score=74.36 Aligned_cols=74 Identities=15% Similarity=0.301 Sum_probs=46.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEe--cceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTT--NIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~--~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|.|.+.+.| +.|.|+|.+....... .... .....|.... +.+|.|.+++.+|+|.|+|.+ +..+.....
T Consensus 24 L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~ 97 (105)
T d1nbqa1 24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL------PTGITFKSVTREDTGTYTCMVSEEGGNSYGE 97 (105)
T ss_dssp EECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE------TTEEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred EEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec------CceEEEecccccceeeEEEEEEECCCCEEEE
Confidence 689999999 9999998543322111 1110 1112233322 236999999999999999999 455555544
Q ss_pred EEEEE
Q psy3125 76 IMLNV 80 (163)
Q Consensus 76 ~~l~V 80 (163)
+.|+|
T Consensus 98 ~~v~v 102 (105)
T d1nbqa1 98 VKVKL 102 (105)
T ss_dssp CEEEC
T ss_pred EEEEE
Confidence 44443
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.21 E-value=1.5e-12 Score=75.29 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+. .| +.|.|+| ++.. +..++|+.+..+ .+..+|.|.+++.+|+|.|+|.+.+. ...+.|.
T Consensus 21 ~~c~vs-~p~~~v~W~k--~g~~-------i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~l~ 85 (89)
T d1tiua_ 21 FEIELS-EPDVHGQWKL--KGQP-------LTASPDCEIIED--GKKHILILHNCQLGMTGEVSFQAANA---KSAANLK 85 (89)
T ss_dssp EEEBCS-SSSCCCBCCS--SSCC-------CCSSSSCEEEEC--SSCEEEECCSCCSCCCSEECCBCSSC---BCCEEEE
T ss_pred EEEEEC-CCCcEEEEEE--eeee-------cccceeEEEEee--ceeEEEEEcCCChhcCEEEEEEECce---EEEEEEE
Confidence 679985 56 9999997 2222 235678888763 46789999999999999999999542 2345566
Q ss_pred EEc
Q psy3125 80 VDD 82 (163)
Q Consensus 80 V~~ 82 (163)
|.+
T Consensus 86 V~e 88 (89)
T d1tiua_ 86 VKE 88 (89)
T ss_dssp EEC
T ss_pred EEE
Confidence 653
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.21 E-value=1.6e-11 Score=71.06 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++.+..... ........|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 89 (91)
T d1cs6a3 12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89 (91)
T ss_dssp CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce--EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence 445677889999999963 45567899987653321 12223456999999999999999999 99999999999998
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 90 ~ 90 (91)
T d1cs6a3 90 H 90 (91)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.9e-11 Score=70.60 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=57.1
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe-cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+..|..+.+.|. ..+.+.+.|+..+...... .........|.|.+++.+|+|.|+|.| |..|..+.++.|+|.
T Consensus 11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~ 89 (90)
T d1vcaa2 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (90)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence 45567999999996 4566788998876543110 011134567999999999999999999 999999999999884
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.20 E-value=2.2e-11 Score=71.23 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEE
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~ 155 (163)
.+....+..|..+.+.|. ..+.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.| |..|..+..
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 86 (97)
T d1koaa1 7 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 86 (97)
T ss_dssp CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence 344567778888999986 34556789998876443221 12345667999999999999999999 999999999
Q ss_pred EEEEEec
Q psy3125 156 IMLNVDG 162 (163)
Q Consensus 156 ~~L~V~~ 162 (163)
+.|.|..
T Consensus 87 ~~l~V~~ 93 (97)
T d1koaa1 87 VFLNVTR 93 (97)
T ss_dssp ECCEEEC
T ss_pred EEEEEee
Confidence 9999875
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.6e-11 Score=70.69 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
+....+..|..+.+.|.. .+.+.+.|++++....... .......|.|.+++.+|+|.|+|.| |..|..+..+.|.
T Consensus 9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 87 (89)
T d1gl4b_ 9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87 (89)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-cEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 445678889999999963 3456889988765432111 1112335999999999999999999 9999999999999
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|+
T Consensus 88 V~ 89 (89)
T d1gl4b_ 88 VQ 89 (89)
T ss_dssp EC
T ss_pred EC
Confidence 85
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.3e-11 Score=68.67 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=44.6
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~ 77 (163)
|.|.+. +.| +.|.|+|.+.. + ..+.. .....+|.|.+++.+|+|.|+|.+.+ .+..+..+.
T Consensus 23 l~C~~~~g~p~p~v~W~~~~~~-~----------~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~ 86 (90)
T d1gsma1 23 LTCRLACADRGASVQWRGLDTS-L----------GAVQS-----DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 86 (90)
T ss_dssp EEEEECCSSTTCEEEEESSTTT-T----------CCEEE-----ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCccEEEEEEeeee-e----------eeeec-----cCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEE
Confidence 679886 777 99999873322 1 01111 12467899999999999999999954 445566666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 87 l~V 89 (90)
T d1gsma1 87 LLV 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=5.7e-11 Score=68.26 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=44.3
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~ 77 (163)
|.|.+. +.| +.|.|+|.+ ..+. ..+.... +.+|.|.+++.+|+|.|+|.+. ..+..+..+.
T Consensus 22 l~C~~~~~~p~~~v~W~k~~-~~~~---------~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 85 (89)
T d1gl4b_ 22 FICTAKSKSPAYTLVWTRLH-NGKL---------PSRAMDF------NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85 (89)
T ss_dssp EEEEEEESSSCCEEEEEEGG-GBCC---------CTTEEEE------TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEccCCCCCCEEEEecCC-ceee---------ccccEee------ceEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence 689997 677 899999832 2111 1222222 3469999999999999999994 4555666666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 86 l~V 88 (89)
T d1gl4b_ 86 LHV 88 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=9e-11 Score=68.57 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=57.9
Q ss_pred EEEcCCCceEeeCCCeEEEecCC--CC-ceeEEEEeCCCeE--------EEecCCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD--LL-TTNIYTYTGDARF--------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~--~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
+|...|....+..|..+.+.|.. .+ .+.+.|++++... .+.. .......|.|.+++.+|+|.|+|.|
T Consensus 2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~ 80 (97)
T d1epfa1 2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-NDDDSSTLTIYNANIDDAGIYKCVVT 80 (97)
T ss_dssp CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEe-ecCcceEEEcccCchhhceEEEEEEE
Confidence 45555667788899999999953 23 3578898755432 2221 1133567999999999999999999
Q ss_pred CCCCCc-cEEEEEEEe
Q psy3125 147 NTEPKM-NMAIMLNVD 161 (163)
Q Consensus 147 ~~~~~~-~~~~~L~V~ 161 (163)
|..|.. +..+.|+|.
T Consensus 81 N~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 81 AEDGTQSEATVNVKIF 96 (97)
T ss_dssp ETTTEEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEEE
Confidence 887764 456787773
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.17 E-value=9e-11 Score=67.38 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=55.7
Q ss_pred ceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V 160 (163)
...+..|..+.+.|.. .+.....|++++..+.... ....|.|.+++.+|+|.|.|.| |..+. .+..+.|.|
T Consensus 9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~----~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V 84 (88)
T d2fcba2 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR----SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV 84 (88)
T ss_dssp CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES----SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc----cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEE
Confidence 3557789999999964 2345788888876554332 2345999999999999999999 77665 467899999
Q ss_pred ec
Q psy3125 161 DG 162 (163)
Q Consensus 161 ~~ 162 (163)
++
T Consensus 85 ~~ 86 (88)
T d2fcba2 85 QA 86 (88)
T ss_dssp CC
T ss_pred eC
Confidence 86
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=7.8e-12 Score=71.30 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=43.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|. +..++ .. +.+.+++++|+|.|.|.+ |..+..+..+.|
T Consensus 24 l~C~a~G~P~P~v~W~k~-g~~~~--------~~---------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l 79 (84)
T d2oz4a3 24 PMCQAWGNPLPELKCLKD-GTFPL--------PI---------------GESVTVTRDLEGTYLCRARSTQGEVTREVTV 79 (84)
T ss_dssp CCCCCEEESCCEEEEEET-TTEEC--------CT---------------TSCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeEcCccEEEEEEe-eccce--------ee---------------eeeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence 789999999 99999982 22111 01 234567899999999999 556667777888
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|..+
T Consensus 80 ~V~~P 84 (84)
T d2oz4a3 80 NVLSP 84 (84)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87653
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=2.4e-11 Score=72.64 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=47.2
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe--e
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM--N 73 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~--~ 73 (163)
|.|.+. +.| +.|.|+|. +..+.......... ..++... ....+|.|.+++.+|+|.|+|++.+ .+.. +
T Consensus 22 L~C~~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s 96 (110)
T d1f97a2 22 LTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFTID----PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96 (110)
T ss_dssp EEEECSCCBSCCEEEEEET-TEESBC-----CBSCSSSCEEEC----TTTCCEEESSCCGGGCEEEEEEEECSSSCCEEC
T ss_pred EEEEeecCCCCCEEEEEeC-CeEecCCCceeEEeecCceEEEe----ecccceEECCCCccCCEEEEEEEEECCCcEEEE
Confidence 689985 788 99999982 22222211111111 1222222 2355799999999999999999954 4433 3
Q ss_pred EEEEEEEEcC
Q psy3125 74 MAIMLNVDDR 83 (163)
Q Consensus 74 ~~~~l~V~~~ 83 (163)
..+.|+|.+.
T Consensus 97 ~~v~l~V~~l 106 (110)
T d1f97a2 97 EAAHMDAVEL 106 (110)
T ss_dssp CCEEEEEESS
T ss_pred EEEEEEEEec
Confidence 4667777654
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.3e-10 Score=69.70 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCCceEeeCCCeEEEecCCC--C---ceeEEEEeCCC---------eEEEe----cCCCCceEEEEecccCcCCCeeEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPDL--L---TTNIYTYTGDA---------RFSVI----HPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~--~---~~~~~~~~~~~---------~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+....+..|..+.+.|... + .+.+.|++++. ++... .........|.|.+++.+|+|.|+|
T Consensus 6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 85 (113)
T d2dava1 6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC 85 (113)
T ss_dssp CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence 34567788899999999632 2 35789987643 23222 1222335679999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEec
Q psy3125 145 QV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~~ 162 (163)
.| |..|..+..+.|.|..
T Consensus 86 ~a~N~~G~~~~~~~L~V~~ 104 (113)
T d2dava1 86 EVTYKDKFDSCSFDLEVHE 104 (113)
T ss_dssp EEECSSCEEEECCEEEEEC
T ss_pred EEEeCCCEEEEEEEEEEEc
Confidence 99 9999999999999974
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=4.4e-11 Score=70.31 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=56.2
Q ss_pred eeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC------CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 89 LSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 89 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+..+.|.
T Consensus 17 ~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 96 (100)
T d1qz1a3 17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96 (100)
T ss_dssp TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 3457888888863 345678899876644321111 123457999999999999999999 9999999999999
Q ss_pred EecC
Q psy3125 160 VDGK 163 (163)
Q Consensus 160 V~~~ 163 (163)
|..|
T Consensus 97 V~~K 100 (100)
T d1qz1a3 97 VFAK 100 (100)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9876
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.3e-11 Score=71.70 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecce--EecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIY--TYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~--~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~ 75 (163)
|.|.+. .| +.|.|++.+ ..+...... ...+ ..|..+. ..+++|.|.+++.+|+|.|.|++.+. ..+..
T Consensus 15 l~c~~~-~p~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~----~~~~sL~I~~l~~~DsG~Y~c~~~n~-~~t~~ 87 (93)
T d1ccza1 15 FHVPSN-VPLKEVLWKKQK-DKVAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDEDEYEMESPNI-TDTMK 87 (93)
T ss_dssp ECCCCS-SCCSCEEEEETT-EEEEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGCEEEEEECTTC-CSCEE
T ss_pred EEecCC-CCCcEEEEEEec-cccceeeecceeeCCCccceEEEc----CCeeEEEEEecChhhCEEEEEEEECC-CcEEE
Confidence 578765 46 999999833 223221111 1111 1233332 34678999999999999999999543 33455
Q ss_pred EEEEEE
Q psy3125 76 IMLNVD 81 (163)
Q Consensus 76 ~~l~V~ 81 (163)
++|.|.
T Consensus 88 ~~l~V~ 93 (93)
T d1ccza1 88 FFLYVL 93 (93)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 667663
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.8e-10 Score=67.93 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCceEeeCCCeEEEecCC--CC---ceeEEEEeCCC---------eEEEe----cCCCCceEEEEecccCcCCCeeEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LL---TTNIYTYTGDA---------RFSVI----HPQNSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~---~~~~~~~~~~~---------~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
+....+..|..+.+.|.. .+ .+.+.|++++. ++... .......+.|.|.+++..|+|.|+|.
T Consensus 11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 90 (110)
T d2avga1 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCE 90 (110)
T ss_dssp CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEE
T ss_pred CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEE
Confidence 455778889999999963 22 35688987643 22221 11222356799999999999999999
Q ss_pred c-CCCCCccEEEEEEEec
Q psy3125 146 V-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V~~ 162 (163)
| |..|..+.++.|.|..
T Consensus 91 a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 91 VSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEETTEEEEEEEEEEEES
T ss_pred EEECCCeEEEEEEEEEEe
Confidence 9 9999999999999974
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.7e-11 Score=72.30 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=50.2
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|+|.+. +.+ +.|.|+|.+....+.. ....|+... +.+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 22 l~C~~~~~~~~~~i~W~k~~~~~~~~~-----~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 90 (101)
T d1iray1 22 RPCPLNPNEHKGTITWYKDDSKTPVST-----EQASRIHQH------KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 90 (101)
T ss_dssp ECCCCCGGGCSSEEEEECSSTTSBCCC-----CTTSSEEEE------TTEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEeeCCCCCCCceEEEEECCccccccc-----ccceEEecc------CCEEEeccceecCCEEEEEEEECCCCeEEEEEE
Confidence 579875 556 9999998433222110 112333322 346999999999999999999 55666777888
Q ss_pred EEEEcCC
Q psy3125 78 LNVDDRG 84 (163)
Q Consensus 78 l~V~~~~ 84 (163)
|.|....
T Consensus 91 L~V~~~~ 97 (101)
T d1iray1 91 AKFVENE 97 (101)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 9998653
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.6e-11 Score=69.31 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=44.5
Q ss_pred CceEEecCC-CcEEEEEe-cCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCe-eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKM-NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~-~~~~ 76 (163)
|.|.+.|.| +.+.|++. ++..... ..+...... .....+|.|.+++.+|+|.|+|.+. ..+.. +..+
T Consensus 21 l~C~~~g~p~p~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a 91 (96)
T d2c9aa1 21 FQCSAIGRTVAGDRLWLQGIDVRDAP--------LKEIKVTSS-RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 91 (96)
T ss_dssp EEEEEESCCCSSCEEEEEETTBCCCC--------EEEEEEEET-TEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeecCCCcEEEEEeeeeeeeec--------CCceeEEEe-ecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEE
Confidence 689999999 76665543 2222211 112211111 2235679999999999999999994 44443 4556
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 92 ~L~V 95 (96)
T d2c9aa1 92 ELVV 95 (96)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.13 E-value=1.5e-10 Score=68.86 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeE------------EE-----ecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARF------------SV-----IHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
|....+..|..+.+.|. ..+.+.+.|++.+... .. ........+.|.|.+++.+|+|.|+|
T Consensus 12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 91 (109)
T d2fdbp2 12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 91 (109)
T ss_dssp SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEE
Confidence 34566777888888885 4556778887653211 10 01112235679999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEe
Q psy3125 145 QV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~ 161 (163)
.| |..|....+++|.|.
T Consensus 92 ~a~N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 92 LAGNSIGISFHSAWLTVL 109 (109)
T ss_dssp EEECSSCEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEC
Confidence 99 999999999999983
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.13 E-value=2e-10 Score=66.00 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=57.1
Q ss_pred EEEEcCCCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-c
Q psy3125 78 LNVDDRGRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-M 152 (163)
Q Consensus 78 l~V~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~ 152 (163)
|.++.+ ...+..|..+.+.|.. .+.....|++++..+..... ...|.|.+++.+|+|.|.|.| |..+. .
T Consensus 5 Lilq~p--~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~----~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~ 78 (89)
T d1fnla2 5 LLLQAP--RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH----NSDFHIPKATLKDSGSYFCRGLVGSKNVS 78 (89)
T ss_dssp EEEECS--CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE----CCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEECC--CCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceecc----ccccEECccceeccceEEEEEEeCCCCeE
Confidence 444433 3567789999999953 34457889888876654332 224999999999999999999 66654 4
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
+..+.|.|+.
T Consensus 79 S~~v~itV~E 88 (89)
T d1fnla2 79 SETVNITITQ 88 (89)
T ss_dssp CCCEEEEEEC
T ss_pred EeeEEEEEEe
Confidence 5778888863
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.13 E-value=3.4e-11 Score=69.36 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=54.9
Q ss_pred CceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 85 RGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
....+..|..+.+.|.. .+.+.+.|++++..+.. .+.......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 88 (89)
T d1biha4 11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88 (89)
T ss_dssp SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence 34567788999999963 44567899987653310 000001124999999999999999999 99999999999887
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.8e-11 Score=70.14 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=39.4
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+.+.++.+.|++. +..+.. ..+++.+.. +.+|.|.+++.+|+|.|+|.+.+
T Consensus 17 l~C~~~g~~~~v~W~~~-g~~l~~-------~~~~~~~~~-----~~~L~I~~v~~~DsG~Y~C~A~n 71 (92)
T d1olza1 17 LKCSQKSNLARVFWKFQ-NGVLKA-------ESPKYGLMG-----RKNLLIFNLSEGDSGVYQCLSEE 71 (92)
T ss_dssp ECCCCSCTTCEEEEEES-SSBCCC-------CSSSBCCTT-----TTCEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeeccCCceeeecC-ccccee-------eeeeeecce-----eeEEEECCCCHHHCcEEEEEEEE
Confidence 68999995599999983 332221 234554432 33599999999999999999943
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2.9e-10 Score=69.33 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=52.3
Q ss_pred CceEEecCC----CcEEEEEecCCee--EEecceEec------CCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHI--LTTNIYTYT------GDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~--~~~~~~~~~------~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.... ..|.|+|.+.... +...+.... ...|..+.... ..++++|.|.+++.+|+|.|.|++.
T Consensus 22 L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 101 (126)
T d1pkoa_ 22 LPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 101 (126)
T ss_dssp EEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeEEEEEEE
Confidence 689987433 5689998543322 111111111 12355554422 2458999999999999999999995
Q ss_pred C-CCCeeEEEEEEEEcC
Q psy3125 68 T-EPKMNMAIMLNVDDR 83 (163)
Q Consensus 68 ~-~~~~~~~~~l~V~~~ 83 (163)
+ ....+..+.|.|.++
T Consensus 102 ~~~~~~~~~v~L~V~~P 118 (126)
T d1pkoa_ 102 DHSYQEEAAVELKVEDP 118 (126)
T ss_dssp ETTEEEEEEEEEEEECT
T ss_pred ECCCEEEEEEEEEEeCC
Confidence 4 344566778888876
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.10 E-value=1.9e-10 Score=67.17 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=56.7
Q ss_pred CceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe------cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc-cE
Q psy3125 85 RGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI------HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NM 154 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~ 154 (163)
+...+..|..+.+.|. ..+.+.+.|++++..+... .........|.|++++++|+|.|+|.| |..|.. +.
T Consensus 11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 90 (97)
T d1biha3 11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90 (97)
T ss_dssp CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence 3567778899999995 4456678999886644321 112223457999999999999999999 888875 46
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
++.|+|.
T Consensus 91 s~~L~Vl 97 (97)
T d1biha3 91 SLKLTVV 97 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 7889883
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=5.1e-10 Score=67.25 Aligned_cols=68 Identities=24% Similarity=0.472 Sum_probs=49.7
Q ss_pred CceEEecCC--CcEEEEEecCCe----eEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLH----ILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~----~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+++.. ..|.|+|+..+. ++. .+......++||.+......+.++|.|.+++.+|+|.|.|.+..
T Consensus 19 l~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 94 (114)
T d3bp5a1 19 FTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS 94 (114)
T ss_dssp EEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEe
Confidence 689987654 678999964322 222 22223445789998876566789999999999999999999853
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.10 E-value=5.4e-11 Score=69.58 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=56.4
Q ss_pred EeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCC-----CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 88 RLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQN-----SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 88 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+..|..+.+.|.. .+.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.| |..|..+..+.|.
T Consensus 16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 95 (97)
T d3dara1 16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95 (97)
T ss_dssp EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 45678889999863 3556789998876543222111 12457999999999999999999 9999999999998
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|.
T Consensus 96 Vl 97 (97)
T d3dara1 96 VV 97 (97)
T ss_dssp EC
T ss_pred EC
Confidence 83
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=7.9e-11 Score=67.90 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=56.3
Q ss_pred cCCCceEeeCCCeEEEecCC-CCceeEEEEeCCCeEEEec------CCCCceEEEEecccCcCCCeeEEEEcCCCCCccE
Q psy3125 82 DRGRGARLSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIH------PQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 154 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~ 154 (163)
.+.....+..|..+.+.|.. .+.+.+.|++++..+.... ........|.|++++.+|+|.|+|.| ++.+.
T Consensus 5 ~~l~~~~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---~n~~~ 81 (90)
T d1x44a1 5 KQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT---TGGQS 81 (90)
T ss_dssp BCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEE---TTEEE
T ss_pred cCCCCEEEeCCCcEEEEEEECCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEE---ecceE
Confidence 34456778889999999964 3446788998765332111 11234667999999999999999999 22467
Q ss_pred EEEEEEecC
Q psy3125 155 AIMLNVDGK 163 (163)
Q Consensus 155 ~~~L~V~~~ 163 (163)
++.|.|+.|
T Consensus 82 ~a~l~V~~k 90 (90)
T d1x44a1 82 SAKLSVDLK 90 (90)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 889998865
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5.8e-10 Score=65.40 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=54.1
Q ss_pred CceEeeCCCeEEEecCCC--Cce-eEEEEeCCC------------eEEEecCCCCceEEEEecccC-cCCCeeEEEEc-C
Q psy3125 85 RGARLSAGPLLNFAFPDL--LTT-NIYTYTGDA------------RFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQV-N 147 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~~~-~~~~~~~~~------------~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a-~ 147 (163)
....+..|..+.+.|... +.+ .+.|++.+. ++.+... .....|.|.++. .+|+|.|+|.| |
T Consensus 10 ~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~~D~G~Y~C~A~N 87 (101)
T d3b5ha1 10 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS--QGRSELHIENLNMEADPGQYRCNGTS 87 (101)
T ss_dssp SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE--TTEEEEEECSCCTTTSSEEEEEEEEE
T ss_pred CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC--CCEEEEEEeccccccCCEEEEEEEEE
Confidence 345567788888888643 333 577876542 2222221 235679999998 57999999999 9
Q ss_pred CCCCccEEEEEEEe
Q psy3125 148 TEPKMNMAIMLNVD 161 (163)
Q Consensus 148 ~~~~~~~~~~L~V~ 161 (163)
..|..+..+.|+|+
T Consensus 88 ~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 88 SKGSDQAIITLRVR 101 (101)
T ss_dssp TTEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEC
Confidence 99999999999986
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=9.2e-11 Score=69.53 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=47.3
Q ss_pred CCCceeEEEEeCCCeE------E--EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 101 DLLTTNIYTYTGDARF------S--VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
..+.+.+.|++++..+ . .........+.|.|.+++.+|+|.|+|.| |..|..+.++.|.|.++
T Consensus 28 G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~ 99 (105)
T d1wwca_ 28 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99 (105)
T ss_dssp CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeC
Confidence 4556788898876532 1 11222233567999999999999999999 99999999999998754
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.07 E-value=9.3e-11 Score=68.07 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=38.8
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.| + .|.|+| ++..+. ....++.... .+.+|.|.+++.+|+|.|+|.+.+
T Consensus 22 l~C~~~g~p~p~~v~W~~--~g~~l~------~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N 79 (94)
T d1biha1 22 LECIIEGNDQGVKYSWKK--DGKSYN------WQEHNAALRK----DEGSLVFLRPQASDEGHYQCFAET 79 (94)
T ss_dssp ECCCEESCCSSCEEEEEE--SSSBCC------TTTTTEEECT----TSCCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEecCCCCeeEEEEEe--eeeeee------eecceeeecc----cceEEEEeccChhcCeEEEEEEEe
Confidence 689999998 5 689998 333322 1122333222 245799999999999999999944
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.1e-11 Score=70.63 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.|.| +.|.|+|.+ ..+.. . . .........+|.|.+++.+|.| .|+|.+ |..+.....+.
T Consensus 22 l~C~~~g~P~p~v~W~~~~-~~~~~-~---------~--~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~ 88 (92)
T d2ifga1 22 LRCQVEGRGLEQAGWILTE-LEQSA-T---------V--MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ 88 (92)
T ss_dssp EEEEEECSSCCCCCEEESC-CCSSE-E---------E--CCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred EeeeccCCCCcEEEEEECC-ceeee-e---------e--eeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEE
Confidence 689999999 999999832 21111 0 0 0011234678999999999999 799999 55555555555
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 89 l~V 91 (92)
T d2ifga1 89 VNV 91 (92)
T ss_dssp CCC
T ss_pred EEE
Confidence 543
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5.1e-10 Score=66.60 Aligned_cols=68 Identities=16% Similarity=0.410 Sum_probs=47.0
Q ss_pred CceEEecCC---CcEEEEEecC-Ce---eE-EecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRD-LH---IL-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~-~~---~~-~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|...... ..+.|+|... .. ++ ..+.......+|+.+...+..+.++|.|.+++.+|+|.|.|.+..
T Consensus 16 l~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~ 91 (108)
T d1hkfa_ 16 VRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR 91 (108)
T ss_dssp EEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEec
Confidence 579876554 5678998532 22 11 122222334578877766667899999999999999999999953
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=99.06 E-value=3e-10 Score=65.94 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=50.2
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..|.|+|+..+ . ++..........+||........+..+|.|.+++.+|+|.|.|.+.
T Consensus 6 l~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~ 77 (94)
T d2gj6d1 6 LNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT 77 (94)
T ss_dssp EEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence 679988877 88999996432 2 2333333344567888876556678999999999999999999984
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.06 E-value=1.1e-10 Score=67.02 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=43.7
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~ 76 (163)
|.|.+.+ .| +.+.|+| ++..+.. ...+..|.|.+++.+|+|.|.|.+.+ .+. .+..+
T Consensus 20 L~C~~~~~~p~~~~~W~k--~g~~~~~-----------------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v 80 (88)
T d2fcba2 20 LRCHSWKDKPLVKVTFFQ--NGKSKKF-----------------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV 80 (88)
T ss_dssp EEEEEGGGCCCEEEEEEE--TTEEEEE-----------------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred EEEEecCCCCCcEEEEEe--ecccccc-----------------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence 6899974 45 7899998 3332211 11244699999999999999999954 333 34566
Q ss_pred EEEEEcC
Q psy3125 77 MLNVDDR 83 (163)
Q Consensus 77 ~l~V~~~ 83 (163)
.|.|..|
T Consensus 81 ~l~V~~P 87 (88)
T d2fcba2 81 TITVQAP 87 (88)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 7777654
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.06 E-value=4.2e-11 Score=70.03 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=44.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCe-eEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKM-NMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~-~~~~~ 77 (163)
|.|.+.|.| +.|.|+| ++..+... .+.++... +...|.|..++.+|+|.|+|.+. ..+.. +..+.
T Consensus 27 l~C~~~g~P~p~v~W~~--ng~~i~~~-----~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~ 94 (97)
T d1cs6a1 27 LTCRARANPPATYRWKM--NGTELKMG-----PDSRYRLV-----AGDLVISNPVKAKDAGSYQCVATNARGTVVSREAS 94 (97)
T ss_dssp ECCEEEEESCCEEEEEE--TTEECCCS-----TTSSEEEE-----TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEEEEeCCCEEEEEE--eeeeccCC-----CCceEEee-----eeeEEEEecccccCCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 33333211 12333332 24568899999999999999994 44433 34555
Q ss_pred EE
Q psy3125 78 LN 79 (163)
Q Consensus 78 l~ 79 (163)
|+
T Consensus 95 L~ 96 (97)
T d1cs6a1 95 LR 96 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.1e-10 Score=66.95 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=50.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEec-----CCCeEEEeccC-CCCeEEEEEcccCcCCCeeEEEEeeCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYT-----GDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~-----~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~ 73 (163)
|+|...... ..+.|++.+...++........ ..+|+.+.... ...+++|.|.+++.+|+|.|.|++... .
T Consensus 14 L~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~---~ 90 (97)
T d2nxyb1 14 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ---K 90 (97)
T ss_dssp ECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTE---E
T ss_pred EEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEecC---C
Confidence 689888777 8899998665554443322211 23466554322 234788999999999999999999532 3
Q ss_pred EEEEEEE
Q psy3125 74 MAIMLNV 80 (163)
Q Consensus 74 ~~~~l~V 80 (163)
..+.|.|
T Consensus 91 ~~v~L~V 97 (97)
T d2nxyb1 91 EEVQLLV 97 (97)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 4445544
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.5e-10 Score=68.40 Aligned_cols=84 Identities=8% Similarity=0.137 Sum_probs=60.7
Q ss_pred EEEEcCCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEec--------CCCC----ceEEEEecccCcCCCeeEE
Q psy3125 78 LNVDDRGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIH--------PQNS----DEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 78 l~V~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~L~i~~v~~~D~G~Y~ 143 (163)
+.|...++.+.+..|..+.+.|. ..+.+.+.|++++....... .... ....|.|.+++.+|+|.|+
T Consensus 5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (105)
T d1nbqa1 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT 84 (105)
T ss_dssp CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence 45666666778889999999995 34567788988765443211 0011 1236999999999999999
Q ss_pred EEc-CCCCCccEEEEEEEe
Q psy3125 144 CQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 144 C~a-~~~~~~~~~~~L~V~ 161 (163)
|.| |..|.....+.|.|.
T Consensus 85 C~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 85 CMVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp EEEEETTSSCEECCEEECC
T ss_pred EEEEECCCCEEEEEEEEEE
Confidence 999 888888877777664
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.2e-10 Score=69.33 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=34.1
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
....|.|.+++.+|+|.|+|.| |..|..+..+.|.|.
T Consensus 92 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 3567999999999999999999 999999999999985
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=6.2e-10 Score=64.26 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=57.3
Q ss_pred EEcCCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCCC---CceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 80 VDDRGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQN---SDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
....|....+..|..+.+.|. ..+.+.+.|++++..+....... .....|.|.+++++|+|.|+|.| |..+...
T Consensus 4 F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~ 83 (92)
T d1epfa2 4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 83 (92)
T ss_dssp EEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEE
T ss_pred EEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEE
Confidence 345566778889999999996 45567889998865332111000 11234999999999999999999 7667666
Q ss_pred EEEEEEEe
Q psy3125 154 MAIMLNVD 161 (163)
Q Consensus 154 ~~~~L~V~ 161 (163)
....+.|.
T Consensus 84 ~~~~i~Vi 91 (92)
T d1epfa2 84 NFKDIQVI 91 (92)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66666664
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=2.1e-10 Score=67.11 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=44.3
Q ss_pred CcEEEEEecCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCe--eEEEEEEEEc
Q psy3125 10 RPVSWMRKRDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKM--NMAIMLNVDD 82 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~--~~~~~l~V~~ 82 (163)
..|.|+|. ...+... +......+.|+.+.. +++|.|.+++.+|+|.|+|++. ..+.. ...+.|.|.+
T Consensus 27 ~~I~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~-----ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~E 98 (98)
T d1hnga1 27 DEVRWERG-STLVAEFKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE 98 (98)
T ss_dssp EEEEEEET-TEEEEEEETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred heeeeecc-ccceeEEccCCccccCCCeEEECC-----CccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEEC
Confidence 67999983 2223221 222333455666543 5679999999999999999994 44443 5677788764
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=6.3e-10 Score=65.38 Aligned_cols=83 Identities=8% Similarity=0.186 Sum_probs=58.6
Q ss_pred EEEcCCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe--------cC-CCC---ceEEEEecccCcCCCeeEEE
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI--------HP-QNS---DEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~-~~~---~~~~L~i~~v~~~D~G~Y~C 144 (163)
.|..+++...+..|..+.+.|. ..+.+.+.|++.+...... .. ... ....|.|.+++.+|+|.|+|
T Consensus 3 sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C 82 (102)
T d1f97a1 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTC 82 (102)
T ss_dssp EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEE
T ss_pred CEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEE
Confidence 3455566677888999999995 3455688898765533221 00 000 12359999999999999999
Q ss_pred Ec-CCCCCccEEEEEEEe
Q psy3125 145 QV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 145 ~a-~~~~~~~~~~~L~V~ 161 (163)
.| |..|.....+.|.|.
T Consensus 83 ~a~n~~g~~~~~~~v~v~ 100 (102)
T d1f97a1 83 MVSEEGGQNYGEVSIHLT 100 (102)
T ss_dssp EEEETTSSSEEEEEEEEE
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 99 888888887777664
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.04 E-value=1.6e-10 Score=66.43 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=43.4
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC-CeeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP-KMNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~-~~~~~~ 76 (163)
|.|.+.+ .| +.+.|+| ++..+.. .. .+..|.|.+++.+|+|.|.|++.+ .+ ..+..+
T Consensus 22 L~C~~~~~~p~~~~~W~k--ng~~~~~-------------~~----~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v 82 (89)
T d1fnla2 22 LRCHSWKNTALHKVTYLQ--NGKDRKY-------------FH----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 82 (89)
T ss_dssp EEEEECTTCCCEEEEEEE--TTEEEEE-------------EE----ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred EEEEecCCCCCcEEEEEE--cccccce-------------ec----cccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence 6899874 45 7899998 3332211 00 123589999999999999999944 32 345677
Q ss_pred EEEEEcC
Q psy3125 77 MLNVDDR 83 (163)
Q Consensus 77 ~l~V~~~ 83 (163)
.|.|.++
T Consensus 83 ~itV~Ea 89 (89)
T d1fnla2 83 NITITQA 89 (89)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7888753
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=6.3e-10 Score=65.41 Aligned_cols=78 Identities=21% Similarity=0.133 Sum_probs=57.7
Q ss_pred ceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCC----CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 86 GARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQN----SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
......+..+.+.|.. .+...+.|++++.......... .....|.|.+++.+|+|.|+|.| |..|....++.
T Consensus 11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 90 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 90 (101)
T ss_dssp CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEE
Confidence 3456678888899953 3556799998875433221111 12346999999999999999999 99999999999
Q ss_pred EEEecC
Q psy3125 158 LNVDGK 163 (163)
Q Consensus 158 L~V~~~ 163 (163)
|.|..+
T Consensus 91 L~V~~~ 96 (101)
T d1iray1 91 AKFVEN 96 (101)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999753
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.4e-10 Score=67.44 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=35.5
Q ss_pred EEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 4 TVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 4 ~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
.+.+.| |.|.|+| ++..+.. ...++... +.+|.|.+++.+|+|.|+|.+.
T Consensus 28 ~~~~~p~P~i~W~k--dg~~l~~------~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~ 78 (103)
T d1iray2 28 KNENNELPKLQWYK--DCKPLLL------DNIHFSGV------KDRLIVMNVAEKHRGNYTCHAS 78 (103)
T ss_dssp CBTTTBCCCCEEEE--TTEECCC------CSSSEEEE------TTEEEESSCCGGGCEEEEEEEE
T ss_pred ccCCCCCCEEEEEE--CCccccC------CCcEEEec------CCEEEEcccccccCcEEEEEEE
Confidence 567888 9999998 4433321 12233333 2359999999999999999993
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.5e-10 Score=64.98 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred ceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V 160 (163)
...+..|..+.+.|.. .+.....|++++..+... .....|.|.+++.+|+|.|.|.| |..+. .+..+.|.|
T Consensus 9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V 84 (89)
T d1f2qa2 9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 84 (89)
T ss_dssp CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc----cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEE
Confidence 3457789999999953 344677788877644321 22346999999999999999999 66554 467788888
Q ss_pred ec
Q psy3125 161 DG 162 (163)
Q Consensus 161 ~~ 162 (163)
..
T Consensus 85 ~~ 86 (89)
T d1f2qa2 85 IK 86 (89)
T ss_dssp EC
T ss_pred Ee
Confidence 75
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.5e-10 Score=67.61 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=54.5
Q ss_pred CceEEecCC----CcEEEEEecCC---eeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL---HILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP 70 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~---~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~ 70 (163)
|+|.+.... ..+.|+|.... .++.... ......+|+.+......++++|.|.+++.+|+|.|.|.+.. ..
T Consensus 19 L~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~ 98 (116)
T d1xeda_ 19 ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 98 (116)
T ss_dssp EEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGG
T ss_pred EEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCC
Confidence 578876442 67889985321 1222221 11223567777766667789999999999999999999953 22
Q ss_pred CeeEEEEEEEEcCC
Q psy3125 71 KMNMAIMLNVDDRG 84 (163)
Q Consensus 71 ~~~~~~~l~V~~~~ 84 (163)
.....+.|.|.+..
T Consensus 99 ~~~~~v~L~V~~~~ 112 (116)
T d1xeda_ 99 GLSFDVSLEVLEHH 112 (116)
T ss_dssp CCEEEEEEEEECCC
T ss_pred CceEeEEEEEECCC
Confidence 34456778887653
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.4e-10 Score=63.96 Aligned_cols=74 Identities=5% Similarity=0.125 Sum_probs=53.2
Q ss_pred CCCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIM 157 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~ 157 (163)
.+....+..|..+.+.|.. .+.+ .+.|++++..+.... ...+.|.....+|+|.|+|.| |..|. .++.++
T Consensus 7 ~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~ 81 (85)
T d1rhfa2 7 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 81 (85)
T ss_dssp CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEE
T ss_pred eCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcEEEEEEE
Confidence 3455678889999999963 3444 689999876543221 223667777788999999999 88884 466888
Q ss_pred EEEe
Q psy3125 158 LNVD 161 (163)
Q Consensus 158 L~V~ 161 (163)
|.|+
T Consensus 82 v~Vk 85 (85)
T d1rhfa2 82 VHLQ 85 (85)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=8.2e-10 Score=65.17 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=55.1
Q ss_pred ceEeeCCCeEEEecCC--CC-ceeEEEEeCCCeEEEe---------cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 86 GARLSAGPLLNFAFPD--LL-TTNIYTYTGDARFSVI---------HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...+..|..+.+.|.. .+ .+.+.|++++...... .........|.|.+++.+|+|.|+|.| |..|..
T Consensus 12 ~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 91 (104)
T d2aw2a1 12 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI 91 (104)
T ss_dssp EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred eEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence 4467788999999964 33 3578998876543321 112223456999999999999999999 877764
Q ss_pred -cEEEEEEEe
Q psy3125 153 -NMAIMLNVD 161 (163)
Q Consensus 153 -~~~~~L~V~ 161 (163)
+.++.|.|.
T Consensus 92 ~s~~~~l~V~ 101 (104)
T d2aw2a1 92 ESHSTTLYVT 101 (104)
T ss_dssp ECCCEEEEEE
T ss_pred EEEEEEEEEE
Confidence 568888885
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=1.4e-09 Score=65.62 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=51.1
Q ss_pred CceEEecCC-----CcEEEEEecCC-----eeEEe-cceEec-----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL-----HILTT-NIYTYT-----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~-----~~~~~-~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.... ..|.|+|.... .+... +..... ..+|+.+......++++|.|.+++.+|+|.|.|
T Consensus 19 L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 98 (119)
T d1neua_ 19 LHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTC 98 (119)
T ss_dssp ECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCChHHCEEEEE
Confidence 679876432 58999985321 12211 111111 135778766545568899999999999999999
Q ss_pred EeeCCC---CeeEEEEEEEEc
Q psy3125 65 QVNTEP---KMNMAIMLNVDD 82 (163)
Q Consensus 65 ~~~~~~---~~~~~~~l~V~~ 82 (163)
.+.+.+ .....+.|.|.+
T Consensus 99 ~v~~~~~~~~~~~~v~L~V~e 119 (119)
T d1neua_ 99 DVKNPPDIVGKTSQVTLYVFE 119 (119)
T ss_dssp EEEC----CCEEEEEEEEEEC
T ss_pred EEEECCCcCceEEEEEEEEEC
Confidence 996533 233456676653
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.00 E-value=1.1e-10 Score=69.14 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=38.8
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+ .+.| +.|.|+|.+..... ..+.|..... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 24 l~C~~~~~~p~~~v~W~k~g~~~~~-------~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~ 81 (105)
T d1cs6a2 24 FTCSPPPHYPALSYRWLLNEFPNFI-------PADGRRFVSQ----TTGNLYIAKTEASDLGNYSCFAT 81 (105)
T ss_dssp ECCCCCSEESCCEEEEEESSTTCBC-------CCCSSEEECT----TTCCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEccCCCCCCEEEEEEeeccccc-------cccceeeeec----CCCEEeecccccccCcEEEEEEE
Confidence 67987 6778 99999983222111 1234443332 24569999999999999999994
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.3e-10 Score=65.20 Aligned_cols=60 Identities=12% Similarity=0.365 Sum_probs=38.0
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCC-eeEEE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPK-MNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~-~~~~~ 76 (163)
|.|.+.|.| | .|.|+| ++..+. ... .+. +.|.....+|+|.|+|.+. ..+. .+..+
T Consensus 21 l~C~~~g~P~P~~i~W~k--~g~~i~-------~~~---------~~~--~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~ 80 (85)
T d1rhfa2 21 LSCEAVGPPEPVTIVWWR--GTTKIG-------GPA---------PSP--SVLNVTGVTQSTMFSCEAHNLKGLASSRTA 80 (85)
T ss_dssp EEEEEECSSSCCEEEEEE--TTEECS-------CSE---------ESS--EEEEECCCSSCEEEEEEEEETTEEEECCCE
T ss_pred EEEEEecCCcceEEEEEE--CCEECC-------CCC---------Ccc--eEEecCCccccEEEEEEEEcCCCcEEEEEE
Confidence 689999999 6 899998 333221 110 112 4455556679999999994 4442 34456
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 81 ~v~V 84 (85)
T d1rhfa2 81 TVHL 84 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.1e-10 Score=65.21 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=45.3
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC-C-CeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE-P-KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~-~-~~~~~~ 76 (163)
|.|.+.+.+ ..+.|+| ++..+.. .....+|.|.+++.+|+|.|.|++.+. . ..+..+
T Consensus 20 L~C~~~~~~~~~~~~w~k--~g~~~~~-----------------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v 80 (89)
T d1f2qa2 20 LRCHGWRNWDVYKVIYYK--DGEALKY-----------------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 80 (89)
T ss_dssp EEEEEGGGCCEEEEEEEE--TTEECCS-----------------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred EEEEecCCCCCeEEEEEE--eeecccc-----------------ccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence 689997654 8899998 3322210 112446999999999999999999542 2 245677
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..+|
T Consensus 81 ~i~V~~~P 88 (89)
T d1f2qa2 81 NITVIKAP 88 (89)
T ss_dssp EEEEECSC
T ss_pred EEEEEeCC
Confidence 88888764
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=3.3e-10 Score=65.95 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=53.8
Q ss_pred eEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCc-cEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~L~V~ 161 (163)
..+..|..+.+.|... ....+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..+.. +..+.|+|.
T Consensus 13 ~~v~~g~~v~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~ 92 (96)
T d1l6za2 13 TTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92 (96)
T ss_dssp SEECTTSCEEEEECCCCSSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEEC
T ss_pred eEEeCCCeEEEEEccCCCCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEE
Confidence 4567788899999642 3457889888654321110 0112346999999999999999999 777755 567899986
Q ss_pred c
Q psy3125 162 G 162 (163)
Q Consensus 162 ~ 162 (163)
.
T Consensus 93 ~ 93 (96)
T d1l6za2 93 F 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=3.8e-09 Score=64.19 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=57.5
Q ss_pred EEEEcCCCceEeeCCCeEEEecC-----CCCceeEEEEeCCC-----------------------eEEEecC-CCCceEE
Q psy3125 78 LNVDDRGRGARLSAGPLLNFAFP-----DLLTTNIYTYTGDA-----------------------RFSVIHP-QNSDEWN 128 (163)
Q Consensus 78 l~V~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------------------~~~~~~~-~~~~~~~ 128 (163)
++|..+...+.+..|..+.+.|. ......+.|++.+. |..+... ......+
T Consensus 3 ~~V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~s 82 (126)
T d1pkoa_ 3 FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA 82 (126)
T ss_dssp CEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEE
T ss_pred EEEECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEE
Confidence 35666666677778899999984 12223467775532 1111111 1123578
Q ss_pred EEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 129 MKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.|++++.+|+|.|+|.+ +..+..+..+.|.|..
T Consensus 83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~ 117 (126)
T d1pkoa_ 83 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117 (126)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence 999999999999999999 7667778888898864
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.97 E-value=1.3e-09 Score=61.79 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCceEeeCCCeEEEecCCC--CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPDL--LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|+...+..|..+.+.|... +.....|++.++...... ...|.|.+++.+|+|.|+|+| +. ..|..++|.|
T Consensus 12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~~s--~~S~~v~L~V 84 (84)
T d1fnla1 12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-----ASSYFIDAATVNDSGEYRCQTNLS--TLSDPVQLEV 84 (84)
T ss_dssp SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-----CSEEEESSCCGGGCEEEEEECSSS--CCCCCEEEEE
T ss_pred CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec-----ceeeEecCCcccCCEEEEEEccCC--CccccEEEEC
Confidence 3356788899999999643 334445544444433222 235999999999999999999 54 3466777776
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.97 E-value=6.9e-10 Score=66.68 Aligned_cols=68 Identities=15% Similarity=0.293 Sum_probs=49.5
Q ss_pred CceEEecCC-CcEEEEEecCC----eeEE-ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL----HILT-TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~----~~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|..+... ..|.|+|+... .++. .........+||........+.++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~ 93 (114)
T d2cdea1 20 LQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSD 93 (114)
T ss_dssp EEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEEC
T ss_pred EEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeec
Confidence 679988877 88999996432 2222 12222233578888776667799999999999999999999953
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.2e-10 Score=63.76 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=50.8
Q ss_pred eEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+..|..+.+.|... +.+.+.|++++..+...... ......|.|.+++++|+|.|+|.| |..+..+....|
T Consensus 7 ~~~~~G~~~~l~C~~~g~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l 82 (92)
T d1olza1 7 HFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV 82 (92)
T ss_dssp EEEETTSCEEECCCCSCTTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred eeEeCCCEEEEEEEeeccCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence 3577889999999743 44688898887765432211 112235999999999999999999 777766554443
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.1e-11 Score=71.42 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=43.6
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee--E
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN--M 74 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~--~ 74 (163)
|.|.+. +.| +.+.|+|. +..+....... .....++.. ......|.|.+++.+|+|.|+|.+.+ .+... .
T Consensus 22 l~C~~~~g~p~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~~----~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 96 (104)
T d1nbqa2 22 LTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVL----NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN 96 (104)
T ss_dssp ECCCCCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCC----CTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred EEEEeecCCCCCEEEEEEC-CEEccCCCceeEEeeCCcEEE----eecccceEECCCCcccCcEEEEEEEECCCceEEEE
Confidence 579884 788 99999983 22222111110 111111111 12345799999999999999999944 44433 3
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|+|.
T Consensus 97 ~v~v~v~ 103 (104)
T d1nbqa2 97 AVRMEAV 103 (104)
T ss_dssp CBCCEEE
T ss_pred EEEEEEE
Confidence 4444443
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.3e-10 Score=65.44 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=58.4
Q ss_pred ceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe--cCCCCceEEEEecccCcCCCe-eEEEEc-CCCCCccEEEEEE
Q psy3125 86 GARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI--HPQNSDEWNMKIDYAQKRDAG-IYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G-~Y~C~a-~~~~~~~~~~~L~ 159 (163)
...+..|..+.+.|. ..+.+.+.|++++...... .........|.|.+++.+|+| .|+|.| |..|..+.++.|.
T Consensus 11 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~ 90 (92)
T d2ifga1 11 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90 (92)
T ss_dssp SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence 456778888999995 4566788999887644322 222345667999999999999 699999 9999999999887
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 91 V 91 (92)
T d2ifga1 91 V 91 (92)
T ss_dssp C
T ss_pred E
Confidence 7
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.6e-10 Score=64.76 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=55.3
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+.. . +.+.+++++|+|.|.|.| |..|..+..+.|+|
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~-~--------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V 81 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-I--------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC-T--------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee-e--------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEE
Confidence 344567789999999974 46678999988765431 1 345678999999999999 99999999999999
Q ss_pred ec
Q psy3125 161 DG 162 (163)
Q Consensus 161 ~~ 162 (163)
..
T Consensus 82 ~~ 83 (84)
T d2oz4a3 82 LS 83 (84)
T ss_dssp EC
T ss_pred EC
Confidence 74
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.8e-09 Score=62.71 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=48.6
Q ss_pred ceEeeCCCeEEEecCC--CCceeEEE-E-eCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc-c
Q psy3125 86 GARLSAGPLLNFAFPD--LLTTNIYT-Y-TGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-N 153 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~~~~~~~-~-~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~ 153 (163)
...+..|..+.+.|.. .+.+...| + ..+.. ..... .......|.|.+++++|+|.|+|.| |..|.. +
T Consensus 10 ~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 88 (96)
T d2c9aa1 10 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS-SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS 88 (96)
T ss_dssp CEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEE-TTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred CEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEE-eecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence 4567778888888853 23233332 2 22221 11111 2233567999999999999999999 888875 5
Q ss_pred EEEEEEEe
Q psy3125 154 MAIMLNVD 161 (163)
Q Consensus 154 ~~~~L~V~ 161 (163)
..+.|.|+
T Consensus 89 ~~a~L~Vk 96 (96)
T d2c9aa1 89 NYAELVVK 96 (96)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 66899885
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.91 E-value=5.5e-10 Score=63.42 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=39.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +.+.|+++++. .+. ....+|.|.+++.+|+|.|+|++.+. ..+..+.|.
T Consensus 25 L~C~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~l~i~~~~~~d~G~Y~C~a~~s-~~S~~v~L~ 83 (84)
T d1fnla1 25 LKCQGAYSPEDNSTQWFHNES-LIS-------------------SQASSYFIDAATVNDSGEYRCQTNLS-TLSDPVQLE 83 (84)
T ss_dssp EEEECCCBTTBCCCEEEETTE-EEE-------------------SSCSEEEESSCCGGGCEEEEEECSSS-CCCCCEEEE
T ss_pred EEEEeccCCCCeEEEEeeece-eee-------------------ecceeeEecCCcccCCEEEEEEccCC-CccccEEEE
Confidence 689999988 65555443322 211 12346999999999999999999542 334555555
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 84 V 84 (84)
T d1fnla1 84 V 84 (84)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.2e-09 Score=64.19 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=50.9
Q ss_pred CceEEecCC-----CcEEEEEecCCe-------eEEecceEec-----CCCeEEEeccC-CCCeEEEEEcccCcCCCeeE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLH-------ILTTNIYTYT-----GDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIY 62 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~-------~~~~~~~~~~-----~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~Y 62 (163)
|+|.+...+ ..|.|++..... +......... ..+|+.+.... ..++++|.|.+++.+|+|.|
T Consensus 24 L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 103 (124)
T d1eaja_ 24 LPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTY 103 (124)
T ss_dssp ECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccEEccCEEE
Confidence 689987554 358898743211 1111222221 13566665432 23578899999999999999
Q ss_pred EEEeeC-CCCeeEEEEEEEE
Q psy3125 63 ECQVNT-EPKMNMAIMLNVD 81 (163)
Q Consensus 63 ~C~~~~-~~~~~~~~~l~V~ 81 (163)
.|.+.. .+.....+.|.|.
T Consensus 104 ~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 104 QCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEECCCeEEeEEEEEEE
Confidence 999953 4455667777775
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.1e-09 Score=62.57 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.0
Q ss_pred CCCceeEEEEeCCCeEE------E--ec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 101 DLLTTNIYTYTGDARFS------V--IH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~------~--~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
..+.+.+.|++++..+. + .. ........|.|.+++.+|+|.|+|.| |..|..+..+.|.|.++
T Consensus 27 G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~ 99 (103)
T d1wwbx_ 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCC
T ss_pred EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeC
Confidence 45566788888765432 1 11 11122456999999999999999999 99999999999998764
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-10 Score=70.10 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=53.8
Q ss_pred EeeCCCeEEEecCC---CCceeEEEEeCCCeEE--------Ee--cCCCCceEEEEecccCcCC-CeeEEEEc-CCCCCc
Q psy3125 88 RLSAGPLLNFAFPD---LLTTNIYTYTGDARFS--------VI--HPQNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKM 152 (163)
Q Consensus 88 ~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~L~i~~v~~~D-~G~Y~C~a-~~~~~~ 152 (163)
.+..|..+.+.|.. .+.....|++++..+. +. .........|.|.+++.+| +|.|+|.| |..|..
T Consensus 17 ~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~ 96 (115)
T d2crya1 17 HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 96 (115)
T ss_dssp CCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEE
T ss_pred EEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeE
Confidence 45567888888853 2234567777665332 11 1122234579999999999 79999999 999999
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
+..+.|.|++
T Consensus 97 ~~~~~L~V~~ 106 (115)
T d2crya1 97 TEIIRLKEQG 106 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEEEEEEC
Confidence 9999999976
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.89 E-value=1.4e-09 Score=62.93 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=52.8
Q ss_pred CCCceEeeCCCeEEEecCC--CCc-eeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCc-cE
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLT-TNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NM 154 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~ 154 (163)
.+....+..|..+.+.|.. .+. ..+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.. ++
T Consensus 8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~ 87 (94)
T d1biha1 8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 87 (94)
T ss_dssp CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEE
Confidence 3455678889999999974 233 35788887664321110 0122346999999999999999999 888753 45
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|..
T Consensus 88 ~v~l~~ 93 (94)
T d1biha1 88 VISFRK 93 (94)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 666653
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.7e-09 Score=60.32 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=51.6
Q ss_pred eEeeCCCeEEEecCC-CCceeEEEEeCCCeEEEecC-----CCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
..+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.++..+|+|.|+|.| ++.+.++.|.|
T Consensus 16 ~~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a---~n~~~s~~l~V 92 (94)
T d1pd6a_ 16 YQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV---GGEKCSTELFV 92 (94)
T ss_dssp EEEETTSCEEEEEECSSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE---TTEEECCEEEE
T ss_pred EEECcCCeEEEEEEECCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEE---eeEEEEEEEEE
Confidence 456788889999863 34567899998875542211 1134667999999999999999999 22455667777
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
+
T Consensus 93 ~ 93 (94)
T d1pd6a_ 93 K 93 (94)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.1e-09 Score=64.92 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=44.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCC----CCeEEEEEcccCcCCCee-EEEEe-eCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQN----SDEWNMKIDYAQKRDAGI-YECQV-NTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~L~i~~v~~~D~G~-Y~C~~-~~~~~~~ 73 (163)
|.|.+.+.| +.|.|++ ++..+....... ...+........ ....+|.|.+++.+|.|. |+|.| |..+..+
T Consensus 22 l~C~v~g~P~p~i~W~~--~g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~ 98 (107)
T d1iray3 22 LICNVTGQLSDIAYWKW--NGSVIDEDDPVL-GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 98 (107)
T ss_dssp EEEEEEECTTCEEEEEE--TTEECCTTCSSE-EEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEE
T ss_pred EEEEeccCCCCeEEEEE--CCccccccccee-eeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCeEE
Confidence 689999999 9999997 333221110000 000011111000 013479999999999995 99999 4455555
Q ss_pred EEEEEE
Q psy3125 74 MAIMLN 79 (163)
Q Consensus 74 ~~~~l~ 79 (163)
..+.|.
T Consensus 99 ~~i~L~ 104 (107)
T d1iray3 99 AYIQLI 104 (107)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=6.1e-10 Score=62.92 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=38.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +...|+.+++..+ ...+.+|.|.+++.+|+|.|.|++.+. ..+..+.|.
T Consensus 21 L~C~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~i~~v~~~d~G~Y~C~a~~s-~~S~~v~l~ 79 (82)
T d1f2qa1 21 LTCNGNNFFEVSSTKWFHNGSLS--------------------EETNSSLNIVNAKFEDSGEYKCQHQQV-NESEPVYLE 79 (82)
T ss_dssp EECCTTCC----CCEEEETTEEC--------------------SCCSSEEEECSCCGGGCEEEEEECTTS-SCCCCEEEE
T ss_pred EEEEEeeeeeecceeeeeeeeee--------------------ecccceeEECCCChhhCCcEEEEecCC-CCcccEEEE
Confidence 679999998 5444443332211 012346999999999999999999542 345566777
Q ss_pred EE
Q psy3125 80 VD 81 (163)
Q Consensus 80 V~ 81 (163)
|.
T Consensus 80 V~ 81 (82)
T d1f2qa1 80 VF 81 (82)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.3e-08 Score=59.87 Aligned_cols=78 Identities=8% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCceEeeCCCeEEEecCCC---Cc--eeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFPDL---LT--TNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|... +. ..+.|++++..+.... ........|.|..++.+|+|.|+|+| |..+....++
T Consensus 11 p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~ 90 (103)
T d1iama1 11 PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 90 (103)
T ss_dssp CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred CCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence 3345688899999999632 22 3567888877665433 22334667999999999999999999 8888877777
Q ss_pred EEEEe
Q psy3125 157 MLNVD 161 (163)
Q Consensus 157 ~L~V~ 161 (163)
.++|.
T Consensus 91 ~~~~s 95 (103)
T d1iama1 91 FENTS 95 (103)
T ss_dssp EEEEC
T ss_pred eeeEc
Confidence 77764
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=7.8e-10 Score=64.00 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=42.5
Q ss_pred CceEeeCCCeEEEecCCC--C-ceeEEEEeCCCeEEEecC-CCCceEEEEecccCcCCCeeEEEEcC
Q psy3125 85 RGARLSAGPLLNFAFPDL--L-TTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVN 147 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~ 147 (163)
....+..|..+.+.|... + ...+.|++++..+..... .......|.|.+++.+|+|.|+|.|.
T Consensus 14 ~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 80 (93)
T d1n26a1 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA 80 (93)
T ss_dssp TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESS
T ss_pred CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEEC
Confidence 345667789999999743 2 246889987653321100 00112359999999999999999993
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.86 E-value=1.7e-09 Score=63.95 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=51.2
Q ss_pred CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 85 RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+...+..|..+.+.|.. .+.+.+.|++++........ .......|.|.+++++|+|.|+|.| |..+..+.++
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v 91 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV 91 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence 44678889999999974 24567889988754322110 0112335999999999999999999 8777776554
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=98.86 E-value=6.6e-10 Score=63.77 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=53.3
Q ss_pred EcCCCceEeeCCCeEEEecCC-CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 81 DDRGRGARLSAGPLLNFAFPD-LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+.....+..|..+.+.|.. .+.+.+.|++++.. +.+... .....|.|.+++.+|+|.|+|.| |.
T Consensus 5 ~~~l~d~~v~~G~~~~~~c~vs~p~~~v~W~k~g~~i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~n~---- 78 (89)
T d1tiua_ 5 EKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIED--GKKHILILHNCQLGMTGEVSFQAANA---- 78 (89)
T ss_dssp SBCCCCEEEETTSCCCEEEBCSSSSCCCBCCSSSCCCCSSSSCEEEEC--SSCEEEECCSCCSCCCSEECCBCSSC----
T ss_pred EcCCcCEEEeCCCcEEEEEEECCCCcEEEEEEeeeecccceeEEEEee--ceeEEEEEcCCChhcCEEEEEEECce----
Confidence 344556678888889999863 34467788877653 333332 34667999999999999999999 43
Q ss_pred cEEEEEEEe
Q psy3125 153 NMAIMLNVD 161 (163)
Q Consensus 153 ~~~~~L~V~ 161 (163)
..++.|.|+
T Consensus 79 ~~sa~l~V~ 87 (89)
T d1tiua_ 79 KSAANLKVK 87 (89)
T ss_dssp BCCEEEEEE
T ss_pred EEEEEEEEE
Confidence 345677775
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.85 E-value=6.9e-10 Score=66.35 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=42.4
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe---eEEEEeeC-CCCeeE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG---IYECQVNT-EPKMNM 74 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G---~Y~C~~~~-~~~~~~ 74 (163)
|.|.+ .|.| +.|.|+|.+..... .........++.+.. +.+|.|.+++.+|+| .|.|.+.+ .+....
T Consensus 22 L~C~v~~G~P~p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~ 94 (111)
T d1biha2 22 LDCVLPNAYPKPLITWKKRLSGADP--NADVTDFDRRITAGP-----DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 94 (111)
T ss_dssp ECCCCCEEESCCEEEEEEEETTSCG--GGCCCCCCTTEEECT-----TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred EEEEcccCCCCCEEEEEeCCccccc--cccceeeeeeecccc-----ccccEEeeeEeeccCCceEEEEEEEeCCCCceE
Confidence 68986 8999 99999985333211 111111223344332 456999999998877 79999954 344443
Q ss_pred E
Q psy3125 75 A 75 (163)
Q Consensus 75 ~ 75 (163)
.
T Consensus 95 ~ 95 (111)
T d1biha2 95 V 95 (111)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.1e-09 Score=60.65 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=47.5
Q ss_pred CCceEeeCCCeEEEecCCCC--ce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPDLL--TT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
|+...+..|..+.+.|.... .. ...|++++..+. .....|.|.+++.+|+|.|+|.| +. ..+..+.|.
T Consensus 8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~v~~~d~G~Y~C~a~~s--~~S~~v~l~ 79 (82)
T d1f2qa1 8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE------ETNSSLNIVNAKFEDSGEYKCQHQQV--NESEPVYLE 79 (82)
T ss_dssp SSCSEEETTCCEEEECCTTCC----CCEEEETTEECS------CCSSEEEECSCCGGGCEEEEEECTTS--SCCCCEEEE
T ss_pred CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee------cccceeEECCCChhhCCcEEEEecCC--CCcccEEEE
Confidence 34567888999999997432 23 344455443221 22345999999999999999999 54 445677888
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|.
T Consensus 80 V~ 81 (82)
T d1f2qa1 80 VF 81 (82)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.83 E-value=6.2e-09 Score=62.12 Aligned_cols=64 Identities=17% Similarity=0.379 Sum_probs=46.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|+..+..+ ...+..++|+........+.++|.|.+++.+|+|+|.|.+.
T Consensus 19 l~C~~s~~s~~~~~i~WYrq~~g~~~---~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~ 85 (112)
T d1sq2n_ 19 INCVLRDASYALGSTCWYRKKSGEGN---EESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG 85 (112)
T ss_dssp EEEEECSCSSCCCCEEEEEEETTSCC---CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEECCCcccCCceEEEEeecccee---eeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence 579887543 78999996533211 11233467887776555678999999999999999999984
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.82 E-value=5.2e-09 Score=62.60 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=47.0
Q ss_pred CceEEecCC-CcEEEEEecCCee----E-EecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHI----L-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~----~-~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+++.. ..+.|+|+..+.- + ..+.......+|+..........++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~ 92 (113)
T d2bnqd1 20 LNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVR 92 (113)
T ss_dssp EEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEe
Confidence 689998888 8899999643221 1 11222222345666655545678999999999999999999984
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.6e-09 Score=62.67 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=46.0
Q ss_pred CCCceeEEEEeCCCeE------E--EecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 101 DLLTTNIYTYTGDARF------S--VIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~------~--~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
..+.+.+.|++++..+ . .... .......|.|.++..+|+|.|+|.| |..|..+.++.|.|..+
T Consensus 26 G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~ 100 (107)
T d1he7a_ 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100 (107)
T ss_dssp CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSC
T ss_pred EecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcC
Confidence 4556778888776432 1 1111 1123456999999999999999999 99999999999988653
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.82 E-value=3.8e-09 Score=63.44 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=47.0
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..+... ..+.|+|+..+ ..+. ..........||.+..+...+...|.|.+++.+|+|.|.|.+.
T Consensus 21 L~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 93 (115)
T d1lp9e1 21 LNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALF 93 (115)
T ss_dssp ECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEE
Confidence 689998777 88999996432 2221 1111122356777765545567889999999999999999884
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.82 E-value=2.2e-09 Score=60.97 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=40.2
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.+ + .+.|+| ++..+. ..+..|.|.+++.+|+|.|+|++.+. ..+..+.|
T Consensus 24 L~C~~~~~~~~~~~~w~~--~g~~~~-------------------~~~~~l~i~~v~~~dsG~Y~C~a~ns-~~S~~v~l 81 (85)
T d2fcba1 24 LTCRGTHSPESDSIQWFH--NGNLIP-------------------THTQPSYRFKANNNDSGEYTCQTGQT-SLSDPVHL 81 (85)
T ss_dssp EEEECSSCCCTTCCEEEE--TTEECT-------------------TCCSSEEEEECCGGGCEEEEEECTTS-BCCCCEEE
T ss_pred EEEEEeeccceeEEEeec--cccccc-------------------ccccceEEeeccccCCcEEEEECCCC-cccccEEE
Confidence 689999988 4 566665 222221 12334899999999999999999543 34556667
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 82 ~V~ 84 (85)
T d2fcba1 82 TVL 84 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=6.3e-10 Score=66.77 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=49.3
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEecc--CCCCeEEEEEcccCcCC-CeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~i~~v~~~D-~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+.+ +.+.|++ ++..+.. + ...++.+... ......+|.|.+++.+| +|.|+|.| |..+..+.
T Consensus 26 l~C~v~~~~p~~~v~W~~-~~~~i~~-~-----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~ 98 (115)
T d2crya1 26 IKCFIRSTPPPDRIAWSW-KENVLES-G-----TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE 98 (115)
T ss_dssp CCEEECCSSCCSEEEEES-SSCEECS-E-----EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEE
T ss_pred EEEEeecCCCeeEEEEee-eeeeEee-e-----eeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEE
Confidence 789999965 6788886 2222221 1 1234443321 11223579999999999 69999999 55677777
Q ss_pred EEEEEEEcC
Q psy3125 75 AIMLNVDDR 83 (163)
Q Consensus 75 ~~~l~V~~~ 83 (163)
.+.|.|...
T Consensus 99 ~~~L~V~~~ 107 (115)
T d2crya1 99 IIRLKEQGS 107 (115)
T ss_dssp EECCCCSCS
T ss_pred EEEEEEECC
Confidence 777777644
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.81 E-value=1.8e-08 Score=60.41 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=46.6
Q ss_pred CceEEecCC--CcEEEEEecC---CeeEE-e-cceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRD---LHILT-T-NIYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~---~~~~~-~-~~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.++..- ..+.|+|+.. ...+. . +.... ...+||.+........++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 97 (116)
T d1tvda_ 20 LLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp ECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccceeeEec
Confidence 679887653 8899998632 22222 1 11111 13468988765455678999999999999999998853
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.81 E-value=4e-09 Score=59.85 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred CceEeeCCCeEEEecCCC--Cc-eeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 85 RGARLSAGPLLNFAFPDL--LT-TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
....+..|..+.+.|... +. ....|+.++..+. .....|.|.+++.+|+|.|+|.| +. ..+..+.|.|
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~------~~~~~l~i~~v~~~dsG~Y~C~a~ns--~~S~~v~l~V 83 (85)
T d2fcba1 12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP------THTQPSYRFKANNNDSGEYTCQTGQT--SLSDPVHLTV 83 (85)
T ss_dssp CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT------TCCSSEEEEECCGGGCEEEEEECTTS--BCCCCEEEEE
T ss_pred CCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc------ccccceEEeeccccCCcEEEEECCCC--cccccEEEEE
Confidence 356778899999999742 22 3455665554321 11234999999999999999999 55 3456677777
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 84 ~ 84 (85)
T d2fcba1 84 L 84 (85)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.79 E-value=1e-08 Score=61.30 Aligned_cols=64 Identities=17% Similarity=0.378 Sum_probs=46.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+++.. ..+.|+|+..+..+. ..+...+|+....+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~~~Wyrq~~g~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~ 86 (113)
T d1vesa_ 20 INCVLRDASFELKDTGWYRTKLGSTNE---QSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF 86 (113)
T ss_dssp EEEEEESCSSCCCEEEEEEEETTCCCC---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCcccCCccceeeeeccccce---eeeeecccccceeECCCCceeeeecccccCCcceEeeeee
Confidence 689998654 669999864432111 1123456777776555678899999999999999999983
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.3e-08 Score=60.00 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=40.8
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEE-ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILT-TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~-~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.++... ..+.|.+. +..++. ..... ..+ .+|..+.. .++++|.|.+++.+|+|.|.|.+.+
T Consensus 14 L~C~~~~~~~~~~~~~v~w~~~-~~~v~~~~~~~~~~~~~~~~r~~~~~---~g~~sL~I~~v~~~D~G~Y~C~V~~ 86 (105)
T d1dr9a1 14 LSCGHNVSVEELAQTRIYWQKE-KKMVLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRPSDEGTYECVVLK 86 (105)
T ss_dssp ECCSCCCCTTHHHHCEEEEEET-TEEEEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEECCcccceeEEEEEEEec-ceEEEEEEeccceeecceeeeeeecc---CCcEEEEECcCChHHCeEEEEEEEe
Confidence 678876543 57788773 323322 22221 111 34665543 3578999999999999999999953
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.1e-09 Score=63.96 Aligned_cols=24 Identities=33% Similarity=0.948 Sum_probs=21.7
Q ss_pred CCeEEEEEcccCcCCCeeEEEEee
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
.++.+|.|.+++.+|+|.|.|++.
T Consensus 66 ~~~~sL~I~~v~~~D~G~Y~C~V~ 89 (110)
T d1ncna_ 66 SDSWTLRLHNLQIKDKGLYQCIIH 89 (110)
T ss_dssp TTTTEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEEEECCCChhHCEEEEEEEE
Confidence 357889999999999999999994
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=7.3e-09 Score=61.93 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=45.9
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEec-c-eE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTTN-I-YT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~~-~-~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+++.. ..+.|+|.... .++... . .. ....+||.+..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 19 l~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~ 97 (113)
T d1smoa_ 19 VKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ 97 (113)
T ss_dssp EEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred EEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEEEEEC
Confidence 578876443 67899996432 222211 1 11 111358888765566789999999999999999999854
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.7e-09 Score=63.08 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
.+|+.+......++++|.|.+++.+|+|.|.|++...
T Consensus 69 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 69 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred ceEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeC
Confidence 4688887755567899999999999999999999543
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.76 E-value=1.5e-08 Score=60.66 Aligned_cols=68 Identities=19% Similarity=0.398 Sum_probs=45.9
Q ss_pred CceEEecCC--CcEEEEEecC---CeeE---E---ecceE-e---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRD---LHIL---T---TNIYT-Y---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~---~~~~---~---~~~~~-~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.. ..|.|+|+.. ...+ . ..... + ....|+........+..+|.|.+++.+|+|.|.|.
T Consensus 18 l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 97 (115)
T d2atpb1 18 MSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCA 97 (115)
T ss_dssp EEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEE
T ss_pred EEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCCcEEEEe
Confidence 679998754 7899998632 2211 1 01111 1 12457776665566788999999999999999999
Q ss_pred eeC
Q psy3125 66 VNT 68 (163)
Q Consensus 66 ~~~ 68 (163)
+..
T Consensus 98 ~~~ 100 (115)
T d2atpb1 98 TVG 100 (115)
T ss_dssp EEC
T ss_pred EcC
Confidence 853
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=5.2e-09 Score=62.13 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=50.6
Q ss_pred EeeCCCeEEEecCC---CCceeEEEEeCCCeEEEec------C------CCCceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 88 RLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIH------P------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 88 ~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
.+..|..+.+.|.. .+...+.|++++..+.... . .......|.|.+++.+|+|.|+|.| |..|.
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 92 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 92 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence 46678889999953 3567888988754321110 0 0112345999999999999999999 88886
Q ss_pred ccE--EEEEEEe
Q psy3125 152 MNM--AIMLNVD 161 (163)
Q Consensus 152 ~~~--~~~L~V~ 161 (163)
... .++|.|.
T Consensus 93 ~~~s~~v~l~V~ 104 (110)
T d1f97a2 93 AMRSEAAHMDAV 104 (110)
T ss_dssp CEECCCEEEEEE
T ss_pred EEEEEEEEEEEE
Confidence 644 6667664
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.7e-09 Score=61.72 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=47.9
Q ss_pred EeeCCCeEEEecC--------CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCc----c
Q psy3125 88 RLSAGPLLNFAFP--------DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM----N 153 (163)
Q Consensus 88 ~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~----~ 153 (163)
.+..|....+.|. ..+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..+.. +
T Consensus 10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~vt 89 (103)
T d1iray2 10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 89 (103)
T ss_dssp EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEEE
Confidence 3556677777783 3345789999976644211100 011235999999999999999999 776643 4
Q ss_pred EEEEEEEe
Q psy3125 154 MAIMLNVD 161 (163)
Q Consensus 154 ~~~~L~V~ 161 (163)
..+.|.|.
T Consensus 90 ~~i~~~v~ 97 (103)
T d1iray2 90 RVIEFITL 97 (103)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 45555553
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3.2e-09 Score=62.41 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=52.6
Q ss_pred eEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC-----------CCCceEEEEecccCcCCCeeEEEEc-CCCCC
Q psy3125 87 ARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP-----------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~ 151 (163)
..+..|..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.
T Consensus 12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 91 (104)
T d1nbqa2 12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 91 (104)
T ss_dssp SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence 346678999999964 34567889988765432110 0112356999999999999999999 98888
Q ss_pred ccEEEEEEEe
Q psy3125 152 MNMAIMLNVD 161 (163)
Q Consensus 152 ~~~~~~L~V~ 161 (163)
...++.++|+
T Consensus 92 ~~~s~~v~v~ 101 (104)
T d1nbqa2 92 PMTSNAVRME 101 (104)
T ss_dssp CEECCCBCCE
T ss_pred eEEEEEEEEE
Confidence 8665554443
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=1.2e-07 Score=56.60 Aligned_cols=49 Identities=31% Similarity=0.558 Sum_probs=33.3
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc----cEEEEEEEecC
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM----NMAIMLNVDGK 163 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~----~~~~~L~V~~~ 163 (163)
|+.+.........+|.|.+++++|+|.|.|.+ ...+.. ..-..|.|..|
T Consensus 61 rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V~~k 114 (114)
T d3bp5a1 61 RFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTER 114 (114)
T ss_dssp TEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECSSSSCCCEECCCEEEEEECC
T ss_pred cceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeCCCCcceEECcCeEEEEEEC
Confidence 55555444555678999999999999999998 332221 23456666654
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2e-08 Score=60.04 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=44.3
Q ss_pred CceEEecCC--CcEEEEEecCC----ee--EEecce--Eec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL----HI--LTTNIY--TYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~----~~--~~~~~~--~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.... ..|.|+|+..+ .+ +..... ... ...||.+... .+.++|.|.+++.+|+|+|.|.+.
T Consensus 20 L~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~--~~~~~L~I~~l~~~Dsg~YyCa~~ 97 (114)
T d1akjd_ 20 LKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRL--GDTFVLTLSDFRRENEGYYFCSAL 97 (114)
T ss_dssp EEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECC--CCChhcEEccCCCCCCEEEeEeEc
Confidence 689987665 67999996421 11 211111 111 2357777653 458899999999999999999985
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 98 ~ 98 (114)
T d1akjd_ 98 S 98 (114)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.71 E-value=3.9e-08 Score=58.82 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=44.3
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+ . ++.. +.......+++........+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 l~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 93 (115)
T d1i9ea_ 20 LRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS 93 (115)
T ss_dssp ECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccccc
Confidence 579988776 88899986322 2 2221 222222233444443334568899999999999999999874
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.71 E-value=2e-08 Score=59.28 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=44.8
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+ ..+....... ....||.... ..+.++|.|.+++.+|+|.|.|...
T Consensus 21 l~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (106)
T d1i8ka_ 21 IRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSEDVGDYYCLQS 91 (106)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CCCeeeecccCCccccCEEEeEecC
Confidence 579887766 78999986432 2222222221 1345787654 3468999999999999999999874
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.70 E-value=1.5e-08 Score=60.18 Aligned_cols=67 Identities=16% Similarity=0.380 Sum_probs=43.8
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEE-e-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILT-T-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~-~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..+... ..+.|+|+..+. .+. . .........|+........+.++|.|.+++.+|+|.|.|.+.
T Consensus 19 l~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (110)
T d1u3ha1 19 LNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS 91 (110)
T ss_dssp EEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred EEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeec
Confidence 579988777 779999964322 111 1 111111233555444334568899999999999999999873
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=1.4e-08 Score=60.65 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=45.2
Q ss_pred CceEEecCC-------CcEEEEEecCC--ee-EEecce---EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-------RPVSWMRKRDL--HI-LTTNIY---TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-------~~v~W~k~~~~--~~-~~~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.... ..+.|++.... .. +..... .....+|+.+......++++|.|.+++.+|+|.|.|++.
T Consensus 20 l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~ 99 (118)
T d1qfoa_ 20 IPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFE 99 (118)
T ss_dssp ECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEE
Confidence 689886321 45567774322 12 211111 112356888887655679999999999999999999995
Q ss_pred CC
Q psy3125 68 TE 69 (163)
Q Consensus 68 ~~ 69 (163)
..
T Consensus 100 ~~ 101 (118)
T d1qfoa_ 100 IS 101 (118)
T ss_dssp CC
T ss_pred eC
Confidence 43
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.70 E-value=2.9e-08 Score=58.66 Aligned_cols=65 Identities=18% Similarity=0.389 Sum_probs=45.2
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEe-cceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTT-NIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~-~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+. ++.. .... .....||.... ..++++|.|.+++.+|+|.|.|...
T Consensus 21 L~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (107)
T d1j1pl_ 21 LSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQA 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCcCCCEEEEEEcC
Confidence 579887766 789999975322 2221 1111 11246888765 3468999999999999999999873
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.70 E-value=4.1e-08 Score=59.45 Aligned_cols=66 Identities=21% Similarity=0.455 Sum_probs=47.3
Q ss_pred CceEEecCC---CcEEEEEecCC---e-eEEe---cceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---H-ILTT---NIYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~-~~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+++.. ..|.|+|+..+ . ++.. +..... ..+||.+..+...+...|.|.+++.+|+|+|.|..
T Consensus 21 LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~ 99 (123)
T d1hxmb1 21 LECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCAL 99 (123)
T ss_dssp EEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEEEEee
Confidence 689999865 78999996432 2 2221 122221 24689988755566889999999999999999987
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.70 E-value=3.8e-08 Score=58.11 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=45.7
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..|.|+|+..+ .++..+..... ...||.... ..++++|.|.+++.+|+|.|.|.+.
T Consensus 21 l~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (107)
T d1ospl1 21 ITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD--SGKDYTLSITSLQTEDVATYFCQQY 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSSEEEEESSCCGGGCSEEEEEEC
T ss_pred EEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec--CCCeEEeEEcccccccCCcEEEeec
Confidence 579888776 77999996432 22222222221 235888765 3568999999999999999999884
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.69 E-value=1.3e-08 Score=60.98 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=44.7
Q ss_pred CceEEecCC--CcEEEEEecCC-e---eEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL-H---ILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~-~---~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|..+... ..|.|+|+..+ . ++... .......+|+.+......+..+|.|.+++.+|+|.|.|.+.
T Consensus 19 l~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 93 (115)
T d1fo0a_ 19 MDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMR 93 (115)
T ss_dssp ECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceee
Confidence 679887554 67899996432 2 11111 11111235777765444568899999999999999999984
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.68 E-value=2e-08 Score=59.69 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=42.7
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..|.|+|+..+ ..+.. .........++.+.. .....+|.|.+++.+|+|.|.|.+.
T Consensus 18 l~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 89 (110)
T d2esvd1 18 LPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITE--DRKSSTLILPHATLRDTAVYYCIVV 89 (110)
T ss_dssp EEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECT--TCSEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecc--cCCeeeehhcccccCCceEEEEEEe
Confidence 579877654 56889996432 22222 122222334554443 4578999999999999999999883
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.68 E-value=3.9e-08 Score=58.48 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..++.. ..+.|+|+..+ ..+. .........+|+........+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 l~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 92 (111)
T d1bd2d1 20 LNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAM 92 (111)
T ss_dssp EEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeecc
Confidence 579888777 77899996432 2221 1111122346777766556679999999999999999999884
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.68 E-value=7e-08 Score=56.95 Aligned_cols=66 Identities=20% Similarity=0.412 Sum_probs=49.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. .+... +.. .+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 20 LSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN 98 (116)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEEEEcc
Confidence 689999987 899999975443221 12222 221 3599998876678899999999999999999975
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=6.8e-08 Score=55.38 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred eeCCCeEEEecCC-CCceeEEEEeCCCeEEEec--------CC------CCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 89 LSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIH--------PQ------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 89 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...|..+.+.|.. .+...+.|.+++....... .. ....++|+|++++++|+|.|+|.| +..+
T Consensus 7 ~~~G~sVtl~c~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~-- 84 (93)
T d1ccza1 7 GVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD-- 84 (93)
T ss_dssp EETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS--
T ss_pred EEECCCEEEEecCCCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc--
Confidence 3456778888863 3345778887765432111 00 122456999999999999999999 5544
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
+..+.|.|
T Consensus 85 t~~~~l~V 92 (93)
T d1ccza1 85 TMKFFLYV 92 (93)
T ss_dssp CEEEEEEE
T ss_pred EEEEEEEE
Confidence 44566666
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1e-07 Score=56.94 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCceEeeCCCeEEEecCCCC-----ceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcCC
Q psy3125 84 GRGARLSAGPLLNFAFPDLL-----TTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
|+.+....|..+.+.|.-.. .....|++.. .|+.+.........+|+|.+++.+|
T Consensus 6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D 85 (116)
T d1xeda_ 6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 85 (116)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence 34456667888888885221 1234565432 1333333333456789999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|.|.+ .........+.|.|..
T Consensus 86 sG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 86 SGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp CEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred CEEEEEEEEcCCCCceEeEEEEEEC
Confidence 99999998 3433445567888754
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.67 E-value=2.1e-08 Score=59.96 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=43.3
Q ss_pred CceEEecCC--CcEEEEEecCC---e-eEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---H-ILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~-~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+ . ++... .......+|+.+......+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 94 (114)
T d2ak4d1 20 LDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALS 94 (114)
T ss_dssp ECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeCC
Confidence 579877554 67899996422 1 22111 11111234555554445568999999999999999999873
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=3e-08 Score=57.76 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=41.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E--ecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T--TNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~--~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..|.|+|+.++.-+ . .++..+. ..+||.+..+...+...|.|.+++.+|+++|.|..
T Consensus 7 LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr 85 (103)
T d1oari_ 7 LSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCAR 85 (103)
T ss_dssp EEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEEEEEE
T ss_pred EEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEEEeEE
Confidence 689999876 68999997543222 1 1222222 24799999876677889999999999999999975
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.67 E-value=1.1e-08 Score=59.44 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=46.9
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-CCCCCc-cEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIMLN 159 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~L~ 159 (163)
..+.+.|.. .+.+.+.|++++..+...... ......|.|..++.+|+|.|+|.| |..|.+ ++.+.|+
T Consensus 23 ~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 23 EKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96 (97)
T ss_dssp CEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred CeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence 568888863 456788899877644322110 012346889999999999999999 888865 5677775
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.66 E-value=4.6e-08 Score=58.99 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=48.2
Q ss_pred CceEEecCC---CcEEEEEec---CCeeEEecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKR---DLHILTTNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~---~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+++.. ..+.|+|+. ....+......... .+||....+...+..+|.|.+++.+|+|+|.|....
T Consensus 21 L~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 21 LRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT 96 (120)
T ss_dssp EEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCccc
Confidence 689998665 669999863 23333333332222 358887765455689999999999999999998854
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.66 E-value=3.3e-08 Score=58.36 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=44.1
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|...... .-+.|+|+..+. .+....... ....|+.... ..++++|.|.+++.+|+|+|.|.+..
T Consensus 21 l~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCa~~~ 92 (107)
T d1c5cl1 21 LTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SGSDYSLTISSLESEDFADYYCLQYA 92 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cCCEEEEEEhhhcccCCeEEEEecCc
Confidence 679888766 679999964322 122222111 1234666554 34688999999999999999998743
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.8e-08 Score=59.20 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=42.3
Q ss_pred CceEEecC-C-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEE
Q psy3125 1 MACTVMGL-G-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~-~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~ 75 (163)
|.|.+.|. | + .+.|+| +...+..+.. . ......+|.|..++.+|.|.|+|+|. ..+.....
T Consensus 24 L~C~v~g~~P~p~~~v~W~~--~~~~l~~~~~----------~--~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~ 89 (103)
T d1iama1 24 LRCQVEGGAPRAQLTVVLLR--GEKELKREPA----------V--GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLE 89 (103)
T ss_dssp EEEEEECCBCGGGEEEEEEE--TTEEEEEEEC----------C--TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred EEEEecCCCCCCceEEEEcc--cccccccccc----------c--cccceEEEEEeeehhHCCCEEEEEEEeCCCCccCe
Confidence 68999974 5 4 578988 4443321110 0 12235679999999999999999994 34444444
Q ss_pred EEEEEE
Q psy3125 76 IMLNVD 81 (163)
Q Consensus 76 ~~l~V~ 81 (163)
+.+.|.
T Consensus 90 ~~~~~s 95 (103)
T d1iama1 90 LFENTS 95 (103)
T ss_dssp EEEEEC
T ss_pred EeeeEc
Confidence 445543
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.65 E-value=7.3e-08 Score=57.12 Aligned_cols=67 Identities=15% Similarity=0.318 Sum_probs=48.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecc-eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNI-YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~-~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..|.|+|+.++..+. .+. ..+. ..+||.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr~ 99 (115)
T d1f3dh1 20 VSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAND 99 (115)
T ss_dssp EEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEEEEecc
Confidence 579999876 789999975443221 111 1221 136999987666778899999999999999999753
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.65 E-value=8.3e-08 Score=56.90 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=49.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 19 LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr 97 (117)
T d1um5h1 19 MSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCAR 97 (117)
T ss_dssp EEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEEEEee
Confidence 689999876 78999997543322 1 12222 11 24799998876677889999999999999999975
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.65 E-value=1.2e-07 Score=56.48 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=45.4
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|..+.+..|..+.+.|.. .....+.|++.. .++...........+|+|.+++.+
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~ 82 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS 82 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence 4455556777788888888852 122456777432 133333334456778999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 83 Dsg~Y~Ca~ 91 (114)
T d2cdea1 83 DSASYICVV 91 (114)
T ss_dssp GCSEEEEEE
T ss_pred hCcccceee
Confidence 999999999
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.65 E-value=3.2e-08 Score=58.76 Aligned_cols=67 Identities=13% Similarity=0.299 Sum_probs=46.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+ .++.. .........||........+.+.|.|.+++.+|+|.|.|.+.
T Consensus 20 l~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~ 92 (110)
T d1ac6a_ 20 IHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92 (110)
T ss_dssp ECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEE
T ss_pred EEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeec
Confidence 579888766 78999996432 22221 111111245777766555668899999999999999999884
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.65 E-value=8.3e-08 Score=57.29 Aligned_cols=67 Identities=16% Similarity=0.322 Sum_probs=49.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEe-------cce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTT-------NIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~-------~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..+.|+|+.++..+.. +.. .+. ..+|+.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 20 ISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE 99 (120)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence 589999887 6799999755443221 111 111 246999987766788999999999999999999863
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.65 E-value=8e-08 Score=56.17 Aligned_cols=67 Identities=19% Similarity=0.492 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------ec---ce-EecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------TN---IY-TYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~~---~~-~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.|.. ..|.|+|+.++.-+. .+ .. .+.+ .+||++..+...+...|.|.+++.+|++.|.|.
T Consensus 20 LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCA 99 (109)
T d2ck0h1 20 LSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTGIYYCV 99 (109)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCEEEEEE
Confidence 689999987 799999976543222 11 11 1221 469999987667889999999999999999998
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
-.
T Consensus 100 r~ 101 (109)
T d2ck0h1 100 RG 101 (109)
T ss_dssp EE
T ss_pred Ec
Confidence 53
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.65 E-value=7.1e-08 Score=57.47 Aligned_cols=66 Identities=20% Similarity=0.422 Sum_probs=48.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------Eec-ceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------TTN-IYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~~~-~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ ..+ ...+.. .+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr 97 (120)
T d1dn0b1 20 LTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR 97 (120)
T ss_dssp EEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEEEEe
Confidence 689999987 78999997543222 111 122222 4699999876677899999999999999999964
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.1e-08 Score=60.48 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.2
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
...|+|++++.+|+|.|.|.+ +..+..+..+.|.|.
T Consensus 87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 356999999999999999999 777777888888885
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.65 E-value=9.7e-08 Score=56.78 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..|.|+|+.++.-+ . .+... +.. .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~ 99 (119)
T d1rz7h1 20 ISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD 99 (119)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence 689999987 78999997543222 1 12222 221 36999998767788999999999999999999874
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.64 E-value=1.9e-08 Score=60.24 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCC---e-eEEec--ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H-ILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~-~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...... ..|.|+|+..+ . ++... .......+|+..........+.|.|.+++.+|+|.|.|.+..
T Consensus 20 l~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (115)
T d1j8hd1 20 LRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSE 94 (115)
T ss_dssp ECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEES
T ss_pred EEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecC
Confidence 579988776 78999996432 2 22211 112223456665543334577899999999999999999843
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.64 E-value=2.4e-07 Score=55.93 Aligned_cols=68 Identities=16% Similarity=0.419 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ec-ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TN-IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~-~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+ ...+. ..+||.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~ 99 (135)
T d1ieha_ 20 VSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKY 99 (135)
T ss_dssp EEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEB
T ss_pred EEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceeeEEEEe
Confidence 689999876 779999975432221 11 12222 247999998766778999999999999999999874
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 100 ~ 100 (135)
T d1ieha_ 100 S 100 (135)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.64 E-value=8.3e-08 Score=57.41 Aligned_cols=67 Identities=18% Similarity=0.420 Sum_probs=47.2
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEE-------ecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILT-------TNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~-------~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+..+..+. .+...+. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr 99 (120)
T d2agjh1 20 LTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCAR 99 (120)
T ss_dssp EEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred EEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceEEeeEe
Confidence 689998754 458899975433211 1212221 14799998766667899999999999999999975
Q ss_pred e
Q psy3125 67 N 67 (163)
Q Consensus 67 ~ 67 (163)
.
T Consensus 100 ~ 100 (120)
T d2agjh1 100 T 100 (120)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.64 E-value=8.5e-08 Score=56.76 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=49.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|+++|.. ..+.|+|+.++.-+ . .+... +.. .+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr 98 (117)
T d1jnhb1 20 LSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR 98 (117)
T ss_dssp EEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEEEEee
Confidence 589999886 78999997543322 1 12222 222 3699999876677899999999999999999975
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=2.5e-08 Score=60.37 Aligned_cols=66 Identities=20% Similarity=0.466 Sum_probs=44.0
Q ss_pred CceEEecCC-CcEEEEEecCCe-------eEEecc----eEec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH-------ILTTNI----YTYT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~-------~~~~~~----~~~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|.|.+.+.. ..|.|+|+..+. ++.... ..+. ...|+..... ..+.++|.|.+++.+|+|.|.|
T Consensus 21 L~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~L~I~~~~~~Dsg~YyC 99 (122)
T d1nezg_ 21 LVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD-TNNKYVLTLNKFSKENEGYYFC 99 (122)
T ss_dssp EEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE-TTTEEEEEESSCCGGGCEEEEE
T ss_pred EEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECC-CCCEeEEEEcccccCCCEEEEe
Confidence 689999888 889999853211 222111 1111 1235665542 3467899999999999999999
Q ss_pred Eee
Q psy3125 65 QVN 67 (163)
Q Consensus 65 ~~~ 67 (163)
.+.
T Consensus 100 a~~ 102 (122)
T d1nezg_ 100 SVI 102 (122)
T ss_dssp EEE
T ss_pred eEe
Confidence 984
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.63 E-value=1.2e-07 Score=56.13 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=50.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+ . .+... + ...+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~ 99 (117)
T d1iqdb1 20 VSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVP 99 (117)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEEEEeEc
Confidence 589999986 78999997543322 1 11122 2 1357999998766778899999999999999999874
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.63 E-value=1e-07 Score=56.53 Aligned_cols=67 Identities=18% Similarity=0.374 Sum_probs=49.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+.. .+. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~ 99 (118)
T d2fbjh1 20 LSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARL 99 (118)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEEEeeEe
Confidence 689999987 789999975443221 1112 222 247999998766788999999999999999999863
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=5.1e-09 Score=61.94 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=34.7
Q ss_pred CceEEecC---C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL---G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|. | +.|.|+| +...+...... ............|.|.....+|.|.|+|+|.+
T Consensus 22 l~C~v~g~~p~p~~~i~W~~--~~~~i~~~~~~-------~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n 84 (106)
T d1zxqa1 22 IECRVPTVEPLDSLTLFLFR--GNETLHYETFG-------KAAPAPQEATATFNSTADREDGHRNFSCLAVL 84 (106)
T ss_dssp EEEEECSCBCGGGEEEEEEE--TTEEEEEEECC-------SSTTCTTCEEEEEEEECCGGGGGCEEEEEEEE
T ss_pred EEEEEeCcccCCCceEEEEc--CCEEeeecccc-------eEeecccceeEEEEEeeehhcCCcEEEEEEEe
Confidence 68999973 3 6899998 44433211111 01111111234577777777888899999943
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=1.5e-07 Score=54.56 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=46.5
Q ss_pred CCCeEEEecCCC----CceeEEEEeCCCeEEEecCC------C-----CceEEEEecccCcCCCeeEEEEc-CCCCCc--
Q psy3125 91 AGPLLNFAFPDL----LTTNIYTYTGDARFSVIHPQ------N-----SDEWNMKIDYAQKRDAGIYECQV-NTEPKM-- 152 (163)
Q Consensus 91 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~-----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-- 152 (163)
.|..+.+.|... ....+.|.+++..+...... . ....+|+|++++.+|+|.|+|.+ +..|..
T Consensus 9 ~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~ 88 (98)
T d1hnga1 9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 88 (98)
T ss_dssp TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred cCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEE
Confidence 467788887521 12467787765544221100 0 11245999999999999999999 666655
Q ss_pred cEEEEEEEe
Q psy3125 153 NMAIMLNVD 161 (163)
Q Consensus 153 ~~~~~L~V~ 161 (163)
+..+.|.|.
T Consensus 89 ~~~~~L~V~ 97 (98)
T d1hnga1 89 NKALDLRIL 97 (98)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 677778775
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.63 E-value=3.2e-07 Score=54.80 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=45.5
Q ss_pred EEEcCCCceEeeCCCeEEEecCC---CCceeEEEEeC--C---------------------CeEEEecCCCCceEEEEec
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD---LLTTNIYTYTG--D---------------------ARFSVIHPQNSDEWNMKID 132 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~--~---------------------~~~~~~~~~~~~~~~L~i~ 132 (163)
+|...+..+.+..|..+.+.|.. .....+.|++. + .|+.+.........+|+|.
T Consensus 2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (116)
T d1tvda_ 2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS 81 (116)
T ss_dssp EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence 45666667788888888888842 22345667642 1 1333322222345679999
Q ss_pred ccCcCCCeeEEEEc
Q psy3125 133 YAQKRDAGIYECQV 146 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a 146 (163)
+++.+|+|.|.|.+
T Consensus 82 ~~~~~Dsg~YyCa~ 95 (116)
T d1tvda_ 82 PVRTEDSATYYCAF 95 (116)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred CccccccccceeeE
Confidence 99999999999988
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.63 E-value=9.7e-08 Score=56.93 Aligned_cols=67 Identities=16% Similarity=0.361 Sum_probs=49.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------Ee--cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------TT--NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~~--~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..|.|+|+.++.-+ .. +...+. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 21 LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 21 VSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD 100 (122)
T ss_dssp EEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence 689999987 78999997543322 11 122222 147999998767788999999999999999999764
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.63 E-value=5.4e-08 Score=57.43 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=44.6
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..|.|+|+.. ...+...... .....||.... ..+++.|.|.+++.+|+|+|.|.+.
T Consensus 21 l~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~DsA~YyCa~~ 91 (107)
T d1mexl1 21 VTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SGTDFTLTINNVQSEDLAEYFCQQY 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred EEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CCCeeeeeechhheecceeEEEeEC
Confidence 579877665 7799999643 2222222211 11245787764 3468999999999999999999874
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.63 E-value=5.1e-08 Score=57.27 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=42.3
Q ss_pred CceEEecCCCcEEEEEecC---CeeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRD---LHILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~---~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.....-..+.|+|+.. ...+........ ...+|.... ..++++|.|.+++.+|+|+|.|...
T Consensus 20 l~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 89 (104)
T d1yqvl1 20 MTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMETEDAATYYCQQW 89 (104)
T ss_dssp EEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCcccCCeEEEEec
Confidence 5787654336679999643 222222222222 234566554 3468999999999999999999873
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.62 E-value=8.1e-08 Score=56.85 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=49.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+...+. ..+|+.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~ 98 (116)
T d7fabh1 20 LTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN 98 (116)
T ss_dssp EEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEEeeee
Confidence 689999886 78999997543322 1 1222222 147999987666778999999999999999999864
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.62 E-value=5e-08 Score=57.50 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=44.8
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...... ..+.|+|+..+. .+........ ...|+.... ..++++|.|.+++.+|+|+|.|.+..
T Consensus 20 l~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~L~I~~~~~~DsA~YyCa~~~ 91 (106)
T d1a0ql1 20 ITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG--SGRDYSFSISNLEPEDIATYYCLQYY 91 (106)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred EEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec--CCCEeeeEehhhcccCCEeEEEEEeC
Confidence 579887766 679999964322 2222222111 234777664 34688999999999999999999743
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=6.8e-08 Score=56.90 Aligned_cols=65 Identities=22% Similarity=0.401 Sum_probs=45.1
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+.. ...+....... ....||.... +.++..|.|.+++.+|+|.|.|...
T Consensus 20 L~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 90 (106)
T d1lk3l1 20 ISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIYFCQQS 90 (106)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--CCCEEEeEECCcChhhCCCcccccc
Confidence 679998766 7899999743 22222222111 1245777765 3468899999999999999999874
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.62 E-value=5.3e-08 Score=56.85 Aligned_cols=67 Identities=16% Similarity=0.404 Sum_probs=47.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+.++.-+. .+...+.. .+|+.+..+...+...|.|.+++.+|++.|.|...
T Consensus 13 LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~ 91 (107)
T d1sjva_ 13 LSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTH 91 (107)
T ss_dssp EEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEEC
T ss_pred EEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeeeEecc
Confidence 579999875 788999975433221 12222222 36999998766778999999999999999999763
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.62 E-value=1.2e-07 Score=55.89 Aligned_cols=66 Identities=18% Similarity=0.512 Sum_probs=49.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecce-EecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIY-TYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~-~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+.. .+.+ .+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~ 98 (114)
T d1indh1 20 LSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS 98 (114)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred EEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence 689999987 78999997544322 1 1222 2222 4699999876678899999999999999999976
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.62 E-value=6.5e-08 Score=57.21 Aligned_cols=67 Identities=15% Similarity=0.352 Sum_probs=49.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ec-ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TN-IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~-~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+ ...+. ..+||.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~ 99 (117)
T d1jpth1 20 LSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARD 99 (117)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEEEEeec
Confidence 689999987 789999975443221 11 22222 247999998766788999999999999999999753
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.61 E-value=8.1e-08 Score=57.84 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=46.5
Q ss_pred CceEEecCC---CcEEEEEecCC----eeEEe--cc-eE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL----HILTT--NI-YT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~----~~~~~--~~-~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|+..+ .++.. +. .. ....+|+.+..+...+.+.|.|.+++.+|+|.|.|...
T Consensus 21 L~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 21 ISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG 99 (120)
T ss_dssp EEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred EEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEEEEEc
Confidence 579887654 67999996432 22221 11 11 12346888876555678999999999999999999874
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.61 E-value=7.1e-08 Score=57.68 Aligned_cols=67 Identities=18% Similarity=0.409 Sum_probs=49.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..|.|+|+.++.-+. .+.. .+. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~ 99 (122)
T d1bz7b1 20 LSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRG 99 (122)
T ss_dssp EEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEEEeecC
Confidence 689999987 789999975433221 1111 222 247999987656678899999999999999999763
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.61 E-value=8.3e-08 Score=56.63 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=44.7
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEec-ceEec-CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTN-IYTYT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~-~~~~~-~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+.. ...+... ..... ...|+.... ..+...|.|.+++.+|+|+|.|.+.
T Consensus 21 l~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DSa~YyCa~~ 91 (107)
T d1kcvl1 21 LNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG--SATDFTLTISSVQADDDADYYCGQS 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec--cCCeeecEEHhheecCCceEEEEec
Confidence 579988777 7799999642 2222211 11111 245777654 3468999999999999999999974
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.61 E-value=9.6e-08 Score=57.00 Aligned_cols=67 Identities=18% Similarity=0.410 Sum_probs=48.1
Q ss_pred CceEEecCC---CcEEEEEecCCee---E---E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI---L---T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~---~---~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..|.|+|+.++.. + . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 20 MSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIH 99 (119)
T ss_dssp EEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred EEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEEEEEEe
Confidence 689999876 6799999744322 2 1 11222 11 236999987666778899999999999999999763
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.61 E-value=1.2e-07 Score=56.43 Aligned_cols=67 Identities=16% Similarity=0.383 Sum_probs=49.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------e--cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------T--NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~--~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. . +...+. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~ 99 (121)
T d2p49b1 20 LSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG 99 (121)
T ss_dssp EEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEEEEEES
T ss_pred EEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEEeeecc
Confidence 689999876 788999975433221 1 111122 136999998766778999999999999999999873
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.61 E-value=1.3e-07 Score=56.14 Aligned_cols=67 Identities=18% Similarity=0.351 Sum_probs=50.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-EecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. .-+.|+|+.++.-+. .+.. .+.+ .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~ 99 (120)
T d1ad9b1 20 VSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE 99 (120)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence 689999987 789999975543321 1112 2222 47999988767789999999999999999999763
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=1.1e-07 Score=56.25 Aligned_cols=67 Identities=27% Similarity=0.453 Sum_probs=49.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------EecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------TTNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+ ..++.. +. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~ 98 (117)
T d1c5db1 20 LTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE 98 (117)
T ss_dssp EEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEEEecc
Confidence 689999887 78999997543322 112222 22 246999998766778999999999999999999753
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.61 E-value=7.3e-08 Score=56.87 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=44.6
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEec-ceEec-CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTN-IYTYT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~-~~~~~-~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+.. ...+... ..... ...|+.... ..+.+.|.|.+++.+|+|+|.|...
T Consensus 21 L~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsA~YyCa~~ 91 (107)
T d1tjgl1 21 ITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG--SGTEFTLTISTLRPEDFATYYCQQL 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred EEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec--cCCEEEEEeccceeCcCceEEEEEC
Confidence 679888766 8999999643 2222222 21111 234777654 3468999999999999999999874
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.61 E-value=1.2e-07 Score=55.94 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=43.3
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecc-eEec-CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNI-YTYT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~-~~~~-~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+ ..+.... .... ...++.... +.++.+|.|.+++.+|+|.|.|...
T Consensus 21 L~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~l~~~Dsa~YyCA~~ 91 (108)
T d1jhll_ 21 INCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPEDFAMYICQQH 91 (108)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTTCCSEEEEEEC
T ss_pred EEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC--CCCEEEeEeeeeEeccceEEEEeeC
Confidence 679988776 78999996432 2222222 1111 233555443 3468899999999999999999874
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=9.4e-09 Score=60.84 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=30.3
Q ss_pred CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEEEEE
Q psy3125 34 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIMLNV 80 (163)
Q Consensus 34 ~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V 80 (163)
+|..+.. +++|.|.+++.+|+|.|+|++.+.. .....+.|+|
T Consensus 63 gR~~l~~-----ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 63 GREIIYS-----NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp SSEEECT-----TSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred eEEEEcc-----cccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence 5777653 5679999999999999999995433 2334455554
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.60 E-value=2.6e-07 Score=54.96 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred CceEEecCCCcEEEEEecCCe---e-EEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH---I-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~---~-~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..+.....|.|+|+..+. . +.....................+..+|.|.+++.+|+|.|.|.+.
T Consensus 21 l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (113)
T d1h5ba_ 21 LRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE 91 (113)
T ss_dssp EEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEec
Confidence 579887644779999964322 1 111111111111222222223467789999999999999999984
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=1.3e-07 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=27.3
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~V~ 161 (163)
..+|+|++++.+|+|.|.|.+ +.. ......+.|.|.
T Consensus 80 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 456999999999999999999 432 344556788774
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=98.59 E-value=1.2e-07 Score=56.57 Aligned_cols=66 Identities=17% Similarity=0.345 Sum_probs=47.4
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEE------e-cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILT------T-NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~------~-~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+.++.-+. . +...+. ..+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr 99 (120)
T d1ai1h1 20 LTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR 99 (120)
T ss_dssp EEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeEEEEEe
Confidence 689999864 368899975433221 1 111111 13699998876677899999999999999999975
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.59 E-value=1.2e-07 Score=56.36 Aligned_cols=67 Identities=19% Similarity=0.416 Sum_probs=49.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------e-cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------T-NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~-~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. . +...+.. .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 19 LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~ 97 (119)
T d1kxvc_ 19 LSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPS 97 (119)
T ss_dssp EEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEeeeec
Confidence 689999876 678899975433221 1 1222221 36999988766778999999999999999999863
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.59 E-value=9.2e-08 Score=56.61 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=45.3
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+.. ..++...... .....||.... +.+...|.|.+++.+|+|+|.|.+.
T Consensus 23 L~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~l~~~Dsa~YyCA~~ 93 (109)
T d1bwwa_ 23 ITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG--SGTDYTFTISSLQPEDIATYYCQQY 93 (109)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC--CCCEeEEEEeeceeCcCceEEEeec
Confidence 679988776 7889999643 2233222211 11246787765 3467899999999999999999974
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.59 E-value=8.2e-08 Score=57.41 Aligned_cols=66 Identities=18% Similarity=0.409 Sum_probs=47.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..|.|+|+.++.-+ . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr 98 (121)
T d1j05b_ 20 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAP 98 (121)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEEEeEe
Confidence 689999877 78999997544322 1 11122 11 24699988765567889999999999999999976
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.59 E-value=1.6e-07 Score=55.65 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=48.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------e-cce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------T-NIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~-~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. . +.. .+. ..+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 20 MSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR 98 (117)
T ss_dssp EEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence 689999877 789999975443221 1 111 222 24588988776677889999999999999999975
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.58 E-value=1.1e-07 Score=56.55 Aligned_cols=65 Identities=15% Similarity=0.345 Sum_probs=43.3
Q ss_pred CceEEecCC--CcEEEEEecC---CeeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRD---LHILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~---~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..|.|+|+.. ...+.... .......|+.+.. +.....|.|.+++.+|+|.|.|.+.
T Consensus 18 l~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~Dsa~YyCa~~ 89 (112)
T d1kgcd1 18 LPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE--DRKSSTLILHRATLRDAAVYYCILP 89 (112)
T ss_dssp EEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT--TSSEEEEEESSCCGGGCEEEEEECC
T ss_pred EEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecc--cCCeeEEEEeecccccceeEeeeEe
Confidence 679987655 5699999642 22222111 1122234566554 4567899999999999999999874
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.58 E-value=9.2e-08 Score=56.71 Aligned_cols=66 Identities=17% Similarity=0.371 Sum_probs=48.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ec-ceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TN-IYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~-~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+ ...+.+ .+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr 98 (118)
T d2jelh1 20 ISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR 98 (118)
T ss_dssp EEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceeeeEEE
Confidence 589999987 789999975543221 11 222222 3699998866677889999999999999999964
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.58 E-value=1.2e-07 Score=56.09 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=44.5
Q ss_pred CceEEecCC-CcEEEEEecCCe----eEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH----ILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+. ++...... .....||.... ..+.+.|.|.+++.+|+|+|.|.+.
T Consensus 21 L~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DSa~YyCA~~ 91 (109)
T d1mqkl_ 21 ITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPEDFGSYYCQHH 91 (109)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccccCCeeEEEeee
Confidence 579888766 779999964322 22211111 11235777654 3568999999999999999999874
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.57 E-value=1.2e-07 Score=56.68 Aligned_cols=67 Identities=19% Similarity=0.449 Sum_probs=49.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+ . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~ 99 (123)
T d1mqkh_ 20 LSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRH 99 (123)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccceeEEec
Confidence 689999987 78999997544322 1 12222 21 246999987656778899999999999999999763
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.57 E-value=2.6e-09 Score=62.09 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=44.7
Q ss_pred CceEEecCCCcEEEEEecCCe----eEE-ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILT-TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..+.....|.|+|+..+. ++. ..+......+||.+..+...+..+|.|.+++.+|+|+|.|.+.
T Consensus 13 L~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~ 84 (96)
T d1ymmd1 13 MNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATD 84 (96)
T ss_dssp BCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEE
T ss_pred EEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEe
Confidence 678876544779999864222 111 1222223456777665444567889999999999999999874
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.57 E-value=3.9e-07 Score=54.20 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=44.6
Q ss_pred EEEcCCCceEeeCCCeEEEecCC---CCceeEEEEeCCC---------------------eEEEecCCCCceEEEEeccc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD---LLTTNIYTYTGDA---------------------RFSVIHPQNSDEWNMKIDYA 134 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~L~i~~v 134 (163)
+|...+..+.+..|..+.+.|.. .....+.|++..+ ++.+..........|.|+++
T Consensus 2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (114)
T d2ak4d1 2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS 81 (114)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence 35566666778888888888841 2223456775321 11222222344667999999
Q ss_pred CcCCCeeEEEEc
Q psy3125 135 QKRDAGIYECQV 146 (163)
Q Consensus 135 ~~~D~G~Y~C~a 146 (163)
+.+|+|.|.|.+
T Consensus 82 ~~~Dsg~YyCa~ 93 (114)
T d2ak4d1 82 QVVDSAVYFCAL 93 (114)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccCCCceEeC
Confidence 999999999987
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.57 E-value=3.5e-07 Score=54.50 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=44.8
Q ss_pred EEcCCCceEeeCCCeEEEecCC---CCceeEEEEeCCC---------------------eEEEecCCCCceEEEEecccC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD---LLTTNIYTYTGDA---------------------RFSVIHPQNSDEWNMKIDYAQ 135 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~L~i~~v~ 135 (163)
|...+..+.+..|..+.+.|.- .....+.|++... ++.+..........|.|.+++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 5566667788889999999942 1223467875321 222222222345679999999
Q ss_pred cCCCeeEEEEc
Q psy3125 136 KRDAGIYECQV 146 (163)
Q Consensus 136 ~~D~G~Y~C~a 146 (163)
.+|+|.|.|.+
T Consensus 82 ~~Dsa~YyCa~ 92 (115)
T d1fo0a_ 82 IEDSAVYFCAM 92 (115)
T ss_dssp GGGCEEEEEEE
T ss_pred cccccccccee
Confidence 99999999987
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=5e-08 Score=57.80 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=46.6
Q ss_pred CceEEecCC---CcEEEEEecCCe----eEEecc--e--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH----ILTTNI--Y--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~----~~~~~~--~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+++.. ..+.|.|..++. ++..+. . .....+|+.+..++..+.++|.|.+++.+|+|.|.|.+..
T Consensus 15 l~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~ 93 (110)
T d1u9ka_ 15 VKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYH 93 (110)
T ss_dssp EEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEEEEeC
Confidence 578887643 678999964321 222111 1 1111368988876566789999999999999999999843
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.56 E-value=8.4e-08 Score=56.50 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=45.0
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+..+ .++........ ...||.... ..+...|.|.+++.+|+|.|.|...
T Consensus 20 L~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 90 (106)
T d1op3k1 20 ITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--SGTEFTLTISGLQFDDFATYHCQHY 90 (106)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGCSEEEEEEE
T ss_pred EEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--cCCEEEEEEccccccCCCcEeeeeC
Confidence 579887766 77999997432 23322222211 235777664 3567899999999999999999874
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.56 E-value=1.2e-07 Score=56.30 Aligned_cols=66 Identities=20% Similarity=0.414 Sum_probs=48.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------Ee-c-ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------TT-N-IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~~-~-~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ .. + ...+. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr 98 (119)
T d1eapb1 20 ISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR 98 (119)
T ss_dssp EEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence 689999987 78999997543322 11 1 11222 14699998766677889999999999999999975
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.56 E-value=1.1e-07 Score=56.24 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=48.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ec-ceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TN-IYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~-~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..|.|+|+.++.-+. .+ ...+. ..+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr 98 (118)
T d1nlbh1 20 ISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFCAR 98 (118)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEEEEee
Confidence 689999987 789999975443221 11 11221 24799999866677899999999999999999964
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.56 E-value=1.5e-07 Score=55.90 Aligned_cols=67 Identities=22% Similarity=0.437 Sum_probs=49.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEe---------cceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTT---------NIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~---------~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.|.. ..+.|+|+.++.-+.. +... +. ..+||.+..+...+...|.|.+++.+|++.|.|.
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA 99 (120)
T d1dlfh_ 20 LSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCT 99 (120)
T ss_dssp EEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCceEEEee
Confidence 689999886 7899999765433221 1112 21 2369999887667889999999999999999997
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
..
T Consensus 100 ~~ 101 (120)
T d1dlfh_ 100 GI 101 (120)
T ss_dssp EE
T ss_pred Ee
Confidence 63
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.56 E-value=1.1e-07 Score=56.96 Aligned_cols=66 Identities=21% Similarity=0.444 Sum_probs=49.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceEe-c--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYTY-T--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~~-~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+.... . ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 19 LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr 97 (124)
T d1zvya1 19 LSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGA 97 (124)
T ss_dssp EEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEEEEee
Confidence 689999887 78899997543322 1 122222 2 24799998876677899999999999999999986
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.56 E-value=4e-07 Score=54.44 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecc-eEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNI-YTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~-~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+. ..+.. .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~ 99 (125)
T d1op3h1 20 LSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK 99 (125)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeEeEeec
Confidence 689999987 789999975443221 121 12222 46999988766789999999999999999999863
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.55 E-value=2.3e-07 Score=55.36 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=45.0
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...+..+.+..|..+.+.|.. .....+.|++.. .++.+..........|+|.+++++
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 5566666778889889998852 223457777542 122222222233456999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 84 Dsg~YyCa~ 92 (115)
T d1lp9e1 84 DSALYYCAL 92 (115)
T ss_dssp GCEEEEEEE
T ss_pred cCccceEEE
Confidence 999999987
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=98.55 E-value=1.1e-07 Score=56.23 Aligned_cols=67 Identities=22% Similarity=0.432 Sum_probs=49.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+...+.+ .+|+.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~ 98 (116)
T d1a2yb_ 20 ITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARE 98 (116)
T ss_dssp EEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEEEEEe
Confidence 689999987 789999975433221 12222221 46899987666778999999999999999999864
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.55 E-value=7.3e-08 Score=57.62 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=44.6
Q ss_pred CceEEecCCCcEEEEEecCCe----eEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.-..|.|+|+..+. ++.. .........|+.+........++|.|.+++.+|+|+|.|.+.
T Consensus 20 l~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (115)
T d1ogad1 20 VYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGA 91 (115)
T ss_dssp EEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEccccc
Confidence 578876544789999964322 1111 111112234666555555678999999999999999999874
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.55 E-value=2.1e-07 Score=55.54 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=49.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR 98 (124)
T d1yedb1 20 LSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFCTR 98 (124)
T ss_dssp EEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred EEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEEEecc
Confidence 689999987 78999997543222 1 11122 22 24799998876778899999999999999999976
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.55 E-value=2.2e-07 Score=55.83 Aligned_cols=67 Identities=19% Similarity=0.446 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+.++.-+. .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~ 99 (127)
T d2fb4h1 20 LSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARD 99 (127)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEEEEEEe
Confidence 689999987 789999975433321 12122 11 247999998767788999999999999999999763
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.54 E-value=7.4e-08 Score=56.94 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=43.7
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.... ..+.|+|+..+ ..+..+... .....|+.... ..+.+.|.|.+++.+|+|.|.|.+.
T Consensus 21 l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 92 (108)
T d2fx7l1 21 LSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--SGTDFTLTISRLEPEDFAVYYCQQY 92 (108)
T ss_dssp EEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred EEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--CCCEEEEEehHheecccEEEeeecC
Confidence 579887654 67899997532 223222211 11234776654 3467899999999999999999874
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.54 E-value=1.8e-07 Score=55.54 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=42.7
Q ss_pred CceEEecCC-----CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.... ..+.|+|+..+ ..+........ ...|+.... ..++++|.|.+++.+|+|+|.|.+.
T Consensus 21 l~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 95 (111)
T d1j05a_ 21 MSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQT 95 (111)
T ss_dssp EEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec--CCCEEEEEEcccccccCccEEEeec
Confidence 578876432 45999997432 22222222111 234666654 4568999999999999999999874
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.54 E-value=2.5e-07 Score=55.52 Aligned_cols=66 Identities=18% Similarity=0.374 Sum_probs=49.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. .+... +. ..+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR 98 (127)
T d2fx7h1 20 VSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAR 98 (127)
T ss_dssp EEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEEEEee
Confidence 689999876 779999975543221 12222 22 14799999876778899999999999999999976
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.54 E-value=2.5e-07 Score=55.45 Aligned_cols=66 Identities=17% Similarity=0.425 Sum_probs=49.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..|.|+|+.++.-+. .+.. .+. ..+|+.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr 98 (126)
T d1dfbh1 20 LSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK 98 (126)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEEEEEe
Confidence 689999987 789999975443221 1111 222 24799999876678899999999999999999975
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.54 E-value=2.1e-07 Score=55.48 Aligned_cols=67 Identities=16% Similarity=0.427 Sum_probs=49.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------e-cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------T-NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~-~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. . +...+. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~ 99 (121)
T d1ol0a_ 20 LSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE 99 (121)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence 689999877 789999975433221 1 112221 246999998766788999999999999999999763
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.53 E-value=1.7e-07 Score=55.25 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=44.0
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEec-ceEe-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTN-IYTY-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~-~~~~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+. .+... .... ....||.... ...+.+|.|.+++.+|+|.|.|...
T Consensus 21 l~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (107)
T d1d5il1 21 ITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SGQDYSLTISSLEYEDMGIYYCLQY 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cCCEEEccccccCCcCCEEEEeeec
Confidence 579887766 778999964322 22211 1111 1235787665 3467899999999999999999874
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.53 E-value=1.8e-07 Score=56.24 Aligned_cols=67 Identities=15% Similarity=0.314 Sum_probs=50.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..|.|+|+.++.-+ . .+... +.+ .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~ 99 (128)
T d2nxyd1 20 VSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGV 99 (128)
T ss_dssp EEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEEEEeEE
Confidence 689999988 67899997543222 1 12222 222 47999998767788999999999999999999863
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.53 E-value=3.1e-07 Score=55.16 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=49.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-Eec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. .... .+. ..+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR 98 (125)
T d1rihh1 20 MSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYCAR 98 (125)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEEEEee
Confidence 689999987 789999975443221 1111 121 23699998876678899999999999999999986
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=3.1e-08 Score=58.52 Aligned_cols=34 Identities=12% Similarity=0.344 Sum_probs=27.1
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V 160 (163)
.+|.|.+++.+|+|.|+|.+ +.. +..+..+.|.|
T Consensus 71 gSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp SCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred ccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence 45999999999999999999 443 45566677766
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.53 E-value=1.9e-07 Score=55.67 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=49.4
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ec--ceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TN--IYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~--~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|++.|.. ..+.|+|+.++.-+. .+ ... +. ..+||.+..+...+...|.|.+++.+|++.|.|.
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCa 99 (122)
T d1q9rb1 20 LSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCA 99 (122)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcceEEEEE
Confidence 689999987 689999975433221 11 112 22 2379999987677889999999999999999998
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
..
T Consensus 100 r~ 101 (122)
T d1q9rb1 100 RD 101 (122)
T ss_dssp EC
T ss_pred ec
Confidence 73
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.52 E-value=2.3e-07 Score=55.57 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=49.4
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+... +.+ .+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 19 LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr 97 (126)
T d1lmka1 19 ISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR 97 (126)
T ss_dssp EEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence 689999987 77899997544322 1 22222 222 4799998876778999999999999999999975
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.52 E-value=9.9e-08 Score=56.66 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=46.1
Q ss_pred CceEEecCC---CcEEEEEecCCee---EEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHI---LTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~---~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. .-+.|+|+.+... +...... ....+|+....+...+...|.|.+++.+|+|.|.|...
T Consensus 20 L~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~ 94 (111)
T d1cd0a_ 20 ISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSY 94 (111)
T ss_dssp EEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEeec
Confidence 579988765 5699999743222 1111111 11245787776556679999999999999999999873
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.3e-07 Score=53.76 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=49.9
Q ss_pred EeeCCCeEEEecC--CCCceeEEEEeCCCeEE-----------EecCCC-----CceEEEEecccCcCCCee-EEEEc-C
Q psy3125 88 RLSAGPLLNFAFP--DLLTTNIYTYTGDARFS-----------VIHPQN-----SDEWNMKIDYAQKRDAGI-YECQV-N 147 (163)
Q Consensus 88 ~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~L~i~~v~~~D~G~-Y~C~a-~ 147 (163)
.+..|..+.+.|. ..+.+.+.|..++..+. ...... .....|.|.+++.+|.|. |+|.| |
T Consensus 13 ~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N 92 (107)
T d1iray3 13 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 92 (107)
T ss_dssp ECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEEC
T ss_pred EEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEe
Confidence 4556777888885 34456778876543210 001011 123569999999999995 99999 9
Q ss_pred CCCCccEEEEEEE
Q psy3125 148 TEPKMNMAIMLNV 160 (163)
Q Consensus 148 ~~~~~~~~~~L~V 160 (163)
..|..+..+.|..
T Consensus 93 ~~G~~~~~i~L~~ 105 (107)
T d1iray3 93 THGIDAAYIQLIY 105 (107)
T ss_dssp SSCEEEEEEEEEC
T ss_pred CCCeEEEEEEEEC
Confidence 9999999888864
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=98.51 E-value=2.5e-07 Score=54.77 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=49.4
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~ 98 (118)
T d1lo4h1 20 LSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCARG 98 (118)
T ss_dssp EEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEEeccc
Confidence 689999887 789999975433221 12122 21 136999988766778999999999999999999763
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.51 E-value=2.4e-07 Score=55.77 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=49.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+..+.-+ . .++.. +. ..+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr 98 (130)
T d1rzga1 20 VSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVFYCAS 98 (130)
T ss_dssp EEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEEEEEE
Confidence 679999887 78999997543322 1 12222 11 24799998876678899999999999999999986
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.51 E-value=3.1e-07 Score=54.92 Aligned_cols=66 Identities=14% Similarity=0.351 Sum_probs=49.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecc-eEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNI-YTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~-~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. .+. ..+.. .+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR 98 (124)
T d2b1hh1 20 ISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR 98 (124)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence 689999987 689999975443221 111 12222 4799998876677899999999999999999964
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.50 E-value=8.1e-07 Score=52.71 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=43.0
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--C------------------eEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--A------------------RFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|..+.+..|..+.+.|.. .....+.|++.. . ++............|+|.+++.+
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 4444555667777777787742 222345666532 1 22222223455678999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 83 Dsg~YyCa~ 91 (113)
T d2bnqd1 83 DSATYLCAV 91 (113)
T ss_dssp GCEEEEEEE
T ss_pred CCcEEeEeE
Confidence 999999998
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=98.50 E-value=2.4e-07 Score=54.89 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=49.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------Ee--cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------TT--NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~~--~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.|.. ..+.|+|+.++.-+ .. +...+.. .+|+.+..+...+...|.|.+++.+|++.|.|.-.
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~ 99 (118)
T d1ct8b1 20 LSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY 99 (118)
T ss_dssp EEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEEEEeee
Confidence 689999877 78999997554322 11 1222222 36888887666778999999999999999999763
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.50 E-value=2.8e-07 Score=55.52 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=49.7
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecce-EecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIY-TYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~-~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+.++.-+. .+.. .+.. .+|+.+..+...+...|.|.+++.+|+++|.|.-.
T Consensus 19 LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~ 98 (130)
T d1rhhb1 19 VSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVYYCARD 98 (130)
T ss_dssp EEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence 689999876 789999975543221 1222 2221 46999998777788999999999999999999763
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.49 E-value=1.9e-07 Score=55.95 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=48.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. .+... +. ..+|+.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR 98 (127)
T d1n0xh1 20 VSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCAR 98 (127)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence 689999987 789999975432221 12122 22 24699999876677899999999999999999974
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.49 E-value=3.3e-07 Score=54.37 Aligned_cols=66 Identities=20% Similarity=0.404 Sum_probs=48.5
Q ss_pred CceEEecCC----CcEEEEEecCCeeEE------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILT------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+... +. ..+|+.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr 98 (119)
T d1ncwh1 20 LTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCAG 98 (119)
T ss_dssp EEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEEEEeE
Confidence 689999986 357899975543321 12222 21 13699999876778899999999999999999976
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.49 E-value=2.3e-07 Score=55.69 Aligned_cols=67 Identities=13% Similarity=0.383 Sum_probs=46.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeE------E-ec-ceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL------T-TN-IYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~------~-~~-~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+.++.-+ . .+ ...+.+ .+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 19 LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~ 98 (126)
T d1rjca1 19 LSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAAD 98 (126)
T ss_dssp EEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCceeEEEee
Confidence 689999876 78899997544322 1 11 122222 36999988766778899999999999999999864
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.49 E-value=2.3e-07 Score=55.96 Aligned_cols=66 Identities=24% Similarity=0.435 Sum_probs=46.2
Q ss_pred CceEEecCC-----CcEEEEEecCCeeE---E---ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHIL---T---TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~---~---~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+..+..+ . .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr 99 (126)
T d1etzb1 20 LTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTATYHCAR 99 (126)
T ss_dssp EEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccceEEEEE
Confidence 689999764 35679986432221 1 11222 11 24699998766677899999999999999999985
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.49 E-value=9.8e-08 Score=56.56 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=44.0
Q ss_pred CceEEecCC----CcEEEEEecCCe---eEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH---ILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+++.. ..|.|+|+..+. .+....... ....||..... .++..|.|.+++.+|+|.|.|...
T Consensus 20 l~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~--~~~~~L~I~~~~~~Dsa~YyCa~~ 93 (110)
T d1oaql_ 20 LTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI--GNKAALTITGAQTEDEAIYFCALW 93 (110)
T ss_dssp EEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE--TTEEEEEEESCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc--ccceeeecCCCCccccEeEEEEcc
Confidence 579987543 349999965322 222222221 12468877653 468999999999999999999974
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.49 E-value=4e-07 Score=54.55 Aligned_cols=66 Identities=17% Similarity=0.399 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEE-e---cceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILT-T---NIYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~-~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..|.|+|+..+. ++. . +..... ...||.+... ..+.+.|.|.+++.+|+|.|.|.+.
T Consensus 21 L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i~~~~~~Dsa~YyCa~~ 97 (118)
T d2ij0c1 21 IECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHA-SPTLSTLTVTSAHPEDSGFYVCSAL 97 (118)
T ss_dssp EEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEEC-SSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecc-ccccccccccccccccCceEEEEEe
Confidence 689988777 889999975322 221 1 111111 2457877642 3567899999999999999999984
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.48 E-value=3e-07 Score=54.50 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=42.3
Q ss_pred CceEEecCCCcEEEEEecCCe----eEE-ecce-Eec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILT-TNIY-TYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~-~~~~-~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.-..|.|+|+..+. ++. .... ... ...||..... .....+|.|.+++.+|+|.|.|.+.
T Consensus 19 l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i~~~~~~Dsa~YyCa~~ 93 (111)
T d2esve1 19 LRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT-GGTYSTLKVQPAELEDSGVYFCASS 93 (111)
T ss_dssp EEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC-CCCEEEEEECCcccCCCceEEEeee
Confidence 578754333789999975322 221 1111 111 2456766542 3456899999999999999999863
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.8e-07 Score=56.25 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=30.9
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCC----ccEEEEEEE
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK----MNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~----~~~~~~L~V 160 (163)
|+.+.........+|+|++++++|+|.|.|.+...+. ....+.|.|
T Consensus 71 R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V 120 (121)
T d2g5ra1 71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 120 (121)
T ss_dssp TEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred EEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence 4444433334466799999999999999999933221 235566666
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.47 E-value=9.7e-08 Score=56.33 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=43.3
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..+.|+|+..+. .+...... .....||.... ..+.++|.|.+++.+|+|+|.|...
T Consensus 21 l~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~ 91 (107)
T d3cx5k1 21 ISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG--SGTDYSLTISNLEPEDIATYFCQHH 91 (107)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE--ETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred EEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc--cCCEEEEEEeEeeecCCCcEEeeeC
Confidence 579887776 679999964322 12211111 11234665443 3468899999999999999999874
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.47 E-value=1.8e-07 Score=55.99 Aligned_cols=66 Identities=21% Similarity=0.413 Sum_probs=45.9
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEE------e-cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILT------T-NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~------~-~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+..+..+. . +...+.+ .+||.+..+...+...|.|.+++.+|+++|.|..
T Consensus 20 LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr 99 (123)
T d1r0ah1 20 LTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQ 99 (123)
T ss_dssp EEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceEEeecc
Confidence 679999765 357899974432211 1 1112221 3689988765567889999999999999999986
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.46 E-value=3.5e-07 Score=54.38 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=43.0
Q ss_pred CceEEecCC-------CcEEEEEecC---CeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-------RPVSWMRKRD---LHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-------~~v~W~k~~~---~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.- .-|.|+|+.. ..++...... .....|+.... ..+.++|.|.+++.+|+|+|.|...
T Consensus 21 L~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~--s~~~~~L~I~~l~~~Dsa~YyCA~~ 97 (113)
T d1q9ra1 21 MSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG--SGTDFTLTITSVQAEDLAVYYCKQS 97 (113)
T ss_dssp EEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC--CCCeEeEEecccccCCCeEEEeccc
Confidence 578776431 4599999643 2333322222 11245776654 3568899999999999999999874
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.46 E-value=3.8e-07 Score=54.24 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=46.0
Q ss_pred EEcCCCceEeeCCCeEEEecCC----CCceeEEEEeCC------------CeEEEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD----LLTTNIYTYTGD------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
|...|..+...+|..+.+.|.. .....+.|++.. .++...........+|+|.+++.+|+|.|.
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 4455556777788889999942 223456777431 233333333455678999999999999999
Q ss_pred EEc
Q psy3125 144 CQV 146 (163)
Q Consensus 144 C~a 146 (163)
|.+
T Consensus 83 Ca~ 85 (113)
T d1vesa_ 83 CQA 85 (113)
T ss_dssp EEE
T ss_pred eee
Confidence 998
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=7.4e-07 Score=52.39 Aligned_cols=25 Identities=16% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 122 QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 122 ~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.......|.|.+++++|+|.|.|.+
T Consensus 65 ~~~~~~~L~I~~l~~~DsG~Y~C~v 89 (108)
T d1hkfa_ 65 PDAGFFTVTMTDLREEDSGHYWCRI 89 (108)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEEEEhhhCCCCCEEEEEEE
Confidence 3445678999999999999999998
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.46 E-value=3.4e-07 Score=55.31 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=49.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|++.|.. ..+.|+|+..+.-+. .+... +. ..+||.+..+...+...|.|.+++.+|++.|.|...
T Consensus 19 LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~ 98 (133)
T d1rzfh1 19 VSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDTAVYYCASN 98 (133)
T ss_dssp EEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCCEEEEeeec
Confidence 689999887 678999975442221 12222 21 247999998766788999999999999999999763
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.46 E-value=5.6e-07 Score=52.93 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=43.9
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|....+..|..+.+.|.. .....+.|++.. .|+.... ......|.|++++.+
T Consensus 4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~ 81 (107)
T d1ospl1 4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD--SGKDYTLSITSLQTE 81 (107)
T ss_dssp EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSSEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec--CCCeEEeEEcccccc
Confidence 4455556677778888888842 222346777432 2444432 344678999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 82 Dsa~YyCa~ 90 (107)
T d1ospl1 82 DVATYFCQQ 90 (107)
T ss_dssp GCSEEEEEE
T ss_pred cCCcEEEee
Confidence 999999988
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.45 E-value=8.5e-08 Score=56.81 Aligned_cols=66 Identities=26% Similarity=0.472 Sum_probs=47.6
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE------e-cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT------T-NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~------~-~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|++.|.. ..+.|+|+.++.-+. . +...+.+ .+||.+..+...+...|.|.+++.+|+++|.|..
T Consensus 20 LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr 97 (116)
T d1fn4b1 20 LTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTR 97 (116)
T ss_dssp CEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEEEEE
T ss_pred EEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEEEEe
Confidence 689999876 789999974433221 1 2111111 3688888766667889999999999999999975
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.45 E-value=3.2e-07 Score=55.30 Aligned_cols=67 Identities=24% Similarity=0.554 Sum_probs=48.5
Q ss_pred CceEEecCC---CcEEEEEecCCe---eEEe---------cceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---ILTT---------NIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~~~---------~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y 62 (163)
|.|++.|.. ..|.|+|+.++. .+.. +... +. ..+||.+..+...+...|.|.+++.+|++.|
T Consensus 20 LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~eDtAvY 99 (127)
T d1i3ua_ 20 LSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPEDTAVY 99 (127)
T ss_dssp EEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred EEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecccccceeEE
Confidence 689999886 789999975432 2210 1111 11 2369999876667789999999999999999
Q ss_pred EEEee
Q psy3125 63 ECQVN 67 (163)
Q Consensus 63 ~C~~~ 67 (163)
.|...
T Consensus 100 YCAr~ 104 (127)
T d1i3ua_ 100 YCAAK 104 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99863
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.45 E-value=7.1e-07 Score=53.15 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=43.5
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC----eE-----------------EEecCCCCceEEEEecccCc
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA----RF-----------------SVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~~L~i~~v~~ 136 (163)
|...+..+.+..|..+.+.|.. .....+.|++..+ .+ ............|+|++++.
T Consensus 3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1j8hd1 3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM 82 (115)
T ss_dssp EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence 5555666778888888888853 2234577775321 11 11111122344699999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 83 ~Dsa~YyCa~ 92 (115)
T d1j8hd1 83 SDAAEYFCAV 92 (115)
T ss_dssp GGCEEEEEEE
T ss_pred cCCccceeee
Confidence 9999999998
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.45 E-value=7.1e-08 Score=56.51 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=43.3
Q ss_pred CceEEecCC-CcEEEEEecCCee---EEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHI---LTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~---~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|...+.. ..+.|+|+..+.. +...... .....|+.... +.+...|.|.+++.+|+|.|.|.+.
T Consensus 18 l~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCA~~ 88 (103)
T d8faba1 18 ITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST--SGTTVTLTISGVQAEDEADYYCQAW 88 (103)
T ss_dssp EEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC--CCCccCceEcCcchhHCceEEeeec
Confidence 579887666 7899999754322 2111111 11234666654 3457899999999999999999874
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.44 E-value=4.7e-07 Score=53.65 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=42.7
Q ss_pred CceEEecCC-----CcEEEEEecCCe---eEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLH---ILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~---~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..+..- ..|.|+|+..+. .+........ ...||.... ..+++.|.|.+++.+|+|.|.|.+.
T Consensus 21 L~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~~~~~~L~I~~~~~~DsA~YyCa~~ 95 (111)
T d2gsia1 21 ISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--SGTDFTLNIHPVEEEDAATYYCSHI 95 (111)
T ss_dssp EEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--CCCchhcccccccccCCceEEEEEC
Confidence 579876432 459999974322 2222222111 235887664 3468999999999999999999874
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.44 E-value=1.1e-07 Score=56.50 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=43.7
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+.. ..|.|+|+..+ ..+.... .......|+.... +.+.++|.|.+++.+|+|.|.|.+.
T Consensus 20 l~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsa~YyCA~~ 92 (111)
T d1rzfl1 20 ISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGLQTGDEADYYCGTW 92 (111)
T ss_dssp EEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEE
T ss_pred EEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeeeccccCcceEEeec
Confidence 579887654 56999996432 2222111 1111245777665 3468899999999999999999884
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.44 E-value=5.5e-07 Score=54.60 Aligned_cols=67 Identities=16% Similarity=0.398 Sum_probs=47.1
Q ss_pred CceEEecCC-----CcEEEEEecCCee---EE---e-cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHI---LT---T-NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~---~~---~-~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. .-+.|+|+..+.. +. . +...+. ..+||.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr 99 (132)
T d1tjgh1 20 LTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAH 99 (132)
T ss_dssp EEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceEEEEEE
Confidence 689999765 3588999743222 21 1 111111 24799988765667889999999999999999986
Q ss_pred e
Q psy3125 67 N 67 (163)
Q Consensus 67 ~ 67 (163)
.
T Consensus 100 ~ 100 (132)
T d1tjgh1 100 R 100 (132)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=4.9e-07 Score=53.19 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=43.7
Q ss_pred EEEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
.|...|..+.+.+|..+.+.|.. .....+.|++..+ ++.... ......|.|.+++.
T Consensus 3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~ 80 (107)
T d1j1pl_ 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET 80 (107)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCc
Confidence 34455556677788888888852 2233566764422 333322 23457899999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 81 ~Dsa~YyCa~ 90 (107)
T d1j1pl_ 81 EDFGMYFCQQ 90 (107)
T ss_dssp GGCEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999999987
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.42 E-value=1.1e-06 Score=52.04 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred CceEEecCCCcEEEEEecCCeeE---E--ecce-Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHIL---T--TNIY-TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~---~--~~~~-~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.-..|.|+|+..+..+ . .... .. ....|+.... ......+|.|.+++.+|+|.|.|.+.
T Consensus 19 l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCA~~ 92 (113)
T d2ntsp1 19 LSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ-FSNSRSEMNVSTLELGDSALYLCASS 92 (113)
T ss_dssp EEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeecc-CcCCeeEEEECCCCcccceeeeeeee
Confidence 57876543378899996432221 1 1111 11 1234554443 23457899999999999999999884
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.42 E-value=4.5e-07 Score=53.71 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=41.5
Q ss_pred CceEeeCCCeEEEecCCC----CceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcCCCe
Q psy3125 85 RGARLSAGPLLNFAFPDL----LTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~D~G 140 (163)
+.+.+.+|..+.+.|... ....+.|++.. .++............|.|++++.+|+|
T Consensus 8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa 87 (111)
T d1cd0a_ 8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA 87 (111)
T ss_dssp SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence 346677777788888421 12236666432 244444334456788999999999999
Q ss_pred eEEEEc
Q psy3125 141 IYECQV 146 (163)
Q Consensus 141 ~Y~C~a 146 (163)
.|.|.+
T Consensus 88 ~YyCA~ 93 (111)
T d1cd0a_ 88 DYYCQS 93 (111)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 999987
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.42 E-value=5.4e-07 Score=53.45 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=45.1
Q ss_pred EEcCCCceEeeCCCeEEEecCC----CCceeEEEEeCC------------CeEEEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD----LLTTNIYTYTGD------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
|...|..+.+..|..+.+.|.. .....+.|++.. .++...........+|.|++++.+|+|.|.
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence 4445556667778888888841 123467787531 234333323345678999999999999999
Q ss_pred EEc
Q psy3125 144 CQV 146 (163)
Q Consensus 144 C~a 146 (163)
|.+
T Consensus 82 CA~ 84 (112)
T d1sq2n_ 82 CGL 84 (112)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=1.5e-07 Score=56.41 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=40.1
Q ss_pred CceEEecCC----CcEEEEEecCCee---EE--ec-ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHI---LT--TN-IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~---~~--~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|...... ..|.|+|+..+.. +. .. .......+++......+.+..+|.|.+++.+|+|.|.|.+.
T Consensus 19 L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~ 95 (117)
T d1dqta_ 19 FPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVE 95 (117)
T ss_dssp EEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEEEEe
Confidence 689987554 3588999653321 21 10 11111122222222223468899999999999999999884
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.7e-07 Score=53.39 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.0
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+.........+|+|.+++.+|+|.|.|.+
T Consensus 64 R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav 95 (113)
T d1smoa_ 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI 95 (113)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEEECCCCEEEEEEccCCcccCceEEEEE
Confidence 44444434455678999999999999999998
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.40 E-value=5.4e-07 Score=54.35 Aligned_cols=67 Identities=18% Similarity=0.434 Sum_probs=49.9
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEe---------cceE-ec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTT---------NIYT-YT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~---------~~~~-~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|++.|.. ..|.|+|+.++.-+.. +... +. ..+||.+..+...+...|.|.+++.+|+++|.|.
T Consensus 20 LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCA 99 (131)
T d3c2ah1 20 LTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCT 99 (131)
T ss_dssp EEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccCCceEEEEe
Confidence 689999887 7999999754432211 1112 22 2479999887667889999999999999999998
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
..
T Consensus 100 R~ 101 (131)
T d3c2ah1 100 TD 101 (131)
T ss_dssp EE
T ss_pred cc
Confidence 63
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.40 E-value=6.9e-07 Score=52.69 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=44.1
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|..+.+..|..+.+.|.. .....+.|++..+ ++............|.|++++.+
T Consensus 2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 4555666777888888888852 2223566775321 11222222344678999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 82 Dsa~YyCa~ 90 (110)
T d1u3ha1 82 DSATYFCAA 90 (110)
T ss_dssp SCSEEEECC
T ss_pred CceeEeeee
Confidence 999999988
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.39 E-value=4.4e-07 Score=54.44 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=48.0
Q ss_pred CceEEecCC----CcEEEEEecCCeeEE-------ecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHILT-------TNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~~-------~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+...+. ..+|+.+..+...+...|.|.+++.+|++.|.|..
T Consensus 20 LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr 98 (127)
T d3cx5j1 20 LTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCAR 98 (127)
T ss_dssp EEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEEEeee
Confidence 689999875 468999975443321 1222222 23688888766678899999999999999999975
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.39 E-value=7e-07 Score=52.41 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=42.4
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|..+.+..|..+.+.|.. .....+.|+...+ ++.... .....+|+|++++++
T Consensus 3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG--SGRDYSFSISNLEPE 80 (106)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGG
T ss_pred eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec--CCCEeeeEehhhccc
Confidence 4444556667788888888842 2223467775321 222221 134567999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 81 DsA~YyCa~ 89 (106)
T d1a0ql1 81 DIATYYCLQ 89 (106)
T ss_dssp GCSEEEEEE
T ss_pred CCEeEEEEE
Confidence 999999988
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.39 E-value=2.7e-07 Score=54.96 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred CceEEecCC---CcEEEEEecCC---eeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDL---HILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~---~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. ..|.|+|+..+ .++...... .....|+.... +.+++.|.|.+++.+|+|+|.|...
T Consensus 20 L~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~DsA~YyCA~~ 92 (114)
T d2rhea_ 20 ISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGLESEDEADYYCAAW 92 (114)
T ss_dssp EEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEecccCcccCceEEEeec
Confidence 579887654 67999996432 222211111 11234777664 3468999999999999999999884
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.39 E-value=8e-07 Score=52.77 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=43.4
Q ss_pred CceEEecCC------CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG------RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+.. ...+....... ....||.... ..++++|.|.+++.+|+|.|.|...
T Consensus 22 l~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DsavYyCa~~ 97 (113)
T d1n4xl_ 22 ISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGIYYCFQG 97 (113)
T ss_dssp EEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCccCCCCcccCEEEEEEEC
Confidence 578876532 5799999643 22232222211 1245777654 4568999999999999999999764
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.39 E-value=1.4e-07 Score=55.82 Aligned_cols=66 Identities=17% Similarity=0.429 Sum_probs=47.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-------ecceE-ecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-------TNIYT-YTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-------~~~~~-~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.|.. ..+.|+|+.++.-+. .+... +.. .+||.+..+...+...|.|.+++.+|++.|.|.-
T Consensus 20 LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr 98 (117)
T d1b2wh1 20 LSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR 98 (117)
T ss_dssp EEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred EEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence 579999876 678899975433211 11111 111 3699999876678899999999999999999965
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.39 E-value=1.1e-06 Score=51.67 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=44.6
Q ss_pred EEEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--C------------------eEEEecCCCCceEEEEecccCc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--A------------------RFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
.|...|..+.+..|..+.+.|.. .....+.|++.. + ++.... ......|.|.+++.
T Consensus 3 ~~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~ 80 (107)
T d1kcvl1 3 VMTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG--SATDFTLTISSVQA 80 (107)
T ss_dssp CEEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred CEECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec--cCCeeecEEHhhee
Confidence 34455666778889999999952 222457787532 1 222221 23456799999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 81 ~DSa~YyCa~ 90 (107)
T d1kcvl1 81 DDDADYYCGQ 90 (107)
T ss_dssp GGCEEEEEEE
T ss_pred cCCceEEEEe
Confidence 9999999987
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.39 E-value=2.1e-06 Score=50.79 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=42.1
Q ss_pred CceEEecCCCcEEEEEecCCe---e-EE-ecceE-e---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH---I-LT-TNIYT-Y---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~---~-~~-~~~~~-~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.....-..|.|+|+..+. . +. ..... . ....|+.... ...+..+|.|.+++.+|+|.|.|.+..
T Consensus 19 l~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 19 LRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQRTQQEDSAVYLCASSL 94 (112)
T ss_dssp EEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECCCCcCCCEEEEEeeeC
Confidence 578754323789999964322 2 21 11111 1 1234666553 234578999999999999999999843
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.3e-07 Score=53.83 Aligned_cols=74 Identities=5% Similarity=0.049 Sum_probs=51.2
Q ss_pred eEeeCCCeEEEecCCC-----CceeEEEEeCCCeEEEecC------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 87 ARLSAGPLLNFAFPDL-----LTTNIYTYTGDARFSVIHP------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
..+..|..+.+.|... +...+.|+.++..+..... .......|.|...+.+|+|.|+|+| |..+....
T Consensus 12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~ 91 (106)
T d1zxqa1 12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG 91 (106)
T ss_dssp SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence 4577899999999643 3456889998876653321 1123456888888899999999999 77665555
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.+++
T Consensus 92 ~~~~~~ 97 (106)
T d1zxqa1 92 NIFHKH 97 (106)
T ss_dssp CEEEEE
T ss_pred eeEecc
Confidence 555544
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=1.1e-06 Score=51.64 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=43.4
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|....+..|..+.+.|.. .....+.|++.. .|+.... ......|.|++++++
T Consensus 4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~ 81 (107)
T d1mexl1 4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SGTDFTLTINNVQSE 81 (107)
T ss_dssp EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CCCeeeeeechhhee
Confidence 4455556677788888888842 222356777432 1333322 134577999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 82 DsA~YyCa~ 90 (107)
T d1mexl1 82 DLAEYFCQQ 90 (107)
T ss_dssp GCSEEEEEE
T ss_pred cceeEEEeE
Confidence 999999987
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.37 E-value=8.5e-07 Score=52.56 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=42.9
Q ss_pred CceEEecC-----C-CcEEEEEecCC---eeEEecceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGL-----G-RPVSWMRKRDL---HILTTNIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~-----~-~~v~W~k~~~~---~~~~~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.+. . ..|.|+|+..+ ..+........ ...|+.... ..+.++|.|.+++.+|+|+|.|...
T Consensus 21 L~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~--s~~~~~L~Is~~~~~DsAvYyCa~~ 96 (112)
T d1mjul1 21 ISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG--SGTAFTLRISRVEAEDVGVYYCLQH 96 (112)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec--CCCEEEEEECCccccCCceEEEEeC
Confidence 57987653 2 57999986432 22222222111 234676654 4568999999999999999999763
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.5e-07 Score=54.28 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=41.0
Q ss_pred CceEEecCC----CcEEEEEecCCe---eEEecc--eE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH---ILTTNI--YT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~---~~~~~~--~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. .++-|++..++. ++...+ .. .....|+.+......+..+|.|.+++.+|+|.|.|.+.
T Consensus 20 L~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~ 97 (118)
T d1yjdc1 20 LSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIE 97 (118)
T ss_dssp EEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred EEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeEEEEEEe
Confidence 579887654 344455543322 221111 11 11234666655445578899999999999999999873
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.35 E-value=1.4e-06 Score=51.44 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...++.+.+.+|..+.+.|.. .....+.|+... .++...........+|.|++++.+
T Consensus 3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (111)
T d1bd2d1 3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG 82 (111)
T ss_dssp EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence 3444455556667777777731 112234455321 133333233455788999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 83 Dsa~YyCa~ 91 (111)
T d1bd2d1 83 DSAVYFCAA 91 (111)
T ss_dssp GCEEEEEEE
T ss_pred ccEEEEeec
Confidence 999999987
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.4e-07 Score=54.86 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.5
Q ss_pred CceEEecCC----CcEEEEEecCCe---eEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH---ILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~---~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.... ..|.|+|+..+. ++. ..........++........+..+|.|.+++.+|+|.|.|.+.
T Consensus 19 L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~ 95 (118)
T d1i8lc_ 19 FVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVE 95 (118)
T ss_dssp EEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEEEEeEe
Confidence 579886554 359999975432 221 1111111112222222234568899999999999999999884
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=3.5e-07 Score=54.85 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=44.3
Q ss_pred CceEEecCC-CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...+.. ..+.|+|+.. ...+....... ....||.... ..+.++|.|.+++.+|+|+|.|....
T Consensus 21 l~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DsavYyCa~~~ 92 (119)
T d1f3rb2 21 LSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQPEDVATYFCYQYN 92 (119)
T ss_dssp EEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred EEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC--CCCEEEEEcccCccCCCeEEEeeccC
Confidence 579887766 7899999643 22222221111 1235666554 34578999999999999999998743
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=9.6e-07 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|+|++++.+|+|.|.|.+
T Consensus 80 ~~~~L~I~~~~~~Dsg~YyCa~ 101 (122)
T d1nezg_ 80 NKYVLTLNKFSKENEGYYFCSV 101 (122)
T ss_dssp TEEEEEESSCCGGGCEEEEEEE
T ss_pred CEeEEEEcccccCCCEEEEeeE
Confidence 3467999999999999999998
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.2e-06 Score=50.10 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=51.9
Q ss_pred eEeeCCCeEEEecCCCCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc--CCC--CCccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPDLLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV--NTE--PKMNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~--~~~~~~~~L~V~ 161 (163)
..|..|..+.+.|...... ...+++++...............+.|.+++.+|+|.|+|.. ... ...|..+.|.|.
T Consensus 13 ~~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt 92 (93)
T d1olla2 13 PEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 92 (93)
T ss_dssp SEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CcccCCCcEEEEECCCCCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence 4678899999999865433 44445444322222222245678999999999999999976 222 355788899887
Q ss_pred c
Q psy3125 162 G 162 (163)
Q Consensus 162 ~ 162 (163)
|
T Consensus 93 G 93 (93)
T d1olla2 93 G 93 (93)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.32 E-value=1.1e-06 Score=52.31 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=41.3
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--C--eE-----------------EEecCCCCceEEEEecccCc
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--A--RF-----------------SVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--~--~~-----------------~~~~~~~~~~~~L~i~~v~~ 136 (163)
|..++..+.+..|..+.+.|.. .......|++.. + .+ ............|.|++++.
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 4555556677778888888842 223345566421 1 11 11111223456799999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 83 ~Dsg~YyCa~ 92 (115)
T d1i9ea_ 83 SDSAVYFCAV 92 (115)
T ss_dssp GGCEEEEEEE
T ss_pred cccceecccc
Confidence 9999999987
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.32 E-value=3.1e-06 Score=49.84 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=38.6
Q ss_pred ceEeeCCCeEEEecCCC---CceeEEEEeCC--C--eE--------------EEecCCCCceEEEEecccCcCCCeeEEE
Q psy3125 86 GARLSAGPLLNFAFPDL---LTTNIYTYTGD--A--RF--------------SVIHPQNSDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~---~~~~~~~~~~~--~--~~--------------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 144 (163)
.+.+..|..+.+.|... ....+.|++.. + .+ .+..........|.|.+++.+|+|.|.|
T Consensus 7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 86 (110)
T d2esvd1 7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC 86 (110)
T ss_dssp EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence 45666777777777421 22345676432 1 11 1111223456789999999999999999
Q ss_pred Ec
Q psy3125 145 QV 146 (163)
Q Consensus 145 ~a 146 (163)
.+
T Consensus 87 a~ 88 (110)
T d2esvd1 87 IV 88 (110)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.32 E-value=3.5e-07 Score=53.91 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=43.6
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...... ..|.|+|+..+. .+..... .-...+||..... ....+|.|.+++.+|+|.|.|.+.
T Consensus 19 l~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~--~~~~~L~I~~l~~~Dsa~YyCA~~ 89 (108)
T d1nfde1 19 ITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS--GTTATLTISGAQPEDEAAYYCLSS 89 (108)
T ss_dssp EEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEETTCCGGGCSEEEEEEE
T ss_pred EEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCC--CCEeeeeEcCccccCCceEEEEee
Confidence 578776555 779999975332 2221111 1112358887653 457899999999999999999874
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.4e-06 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=24.8
Q ss_pred eEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
..+|+|++++.+|+|.|+|.+.. .+..+.|.|
T Consensus 66 ~~sL~I~~l~~~DsG~Y~C~v~~---~~~~v~L~V 97 (97)
T d2nxyb1 66 NFPLIIKNLKIEDSDTYICEVED---QKEEVQLLV 97 (97)
T ss_dssp BCCEEECSCCGGGCEEEEEEETT---EEEEEEEEE
T ss_pred EEEEEECCCChHHCEEEEEEEec---CCeEEEEEC
Confidence 45699999999999999999932 245566654
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.8e-06 Score=48.68 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=51.6
Q ss_pred eEeeCCCeEEEecCCCCce-eEEEEeCCCeEEEec-C--CCCceEEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLTT-NIYTYTGDARFSVIH-P--QNSDEWNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLN 159 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~ 159 (163)
..|..|..+.+.|...... ...+++.+....... . .......+.|.+++.+|+|.|+|.. +.. ...|..+.|.
T Consensus 13 ~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~ 92 (95)
T d1olla1 13 FMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92 (95)
T ss_dssp SEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred CcccCCCcEEEEEecCCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEE
Confidence 4577899999999865543 445555544333221 1 2234568999999999999999998 432 3567788888
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|.
T Consensus 93 VT 94 (95)
T d1olla1 93 VT 94 (95)
T ss_dssp EE
T ss_pred Ee
Confidence 75
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.31 E-value=3.6e-06 Score=50.37 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=42.2
Q ss_pred EEcCCCceEeeCCCeEEEecCCC----CceeEEEEeCC------------------------CeEEEecCCCCceEEEEe
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL----LTTNIYTYTGD------------------------ARFSVIHPQNSDEWNMKI 131 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~L~i 131 (163)
|..++..+....|..+.+.|... ....+.|++.. .|+.+..........|+|
T Consensus 4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I 83 (120)
T d1ypzf1 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (120)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence 34444455556677777777421 11235566431 244444334445678999
Q ss_pred cccCcCCCeeEEEEc
Q psy3125 132 DYAQKRDAGIYECQV 146 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a 146 (163)
.+++.+|+|.|.|.+
T Consensus 84 ~~l~~~Dsa~YyCA~ 98 (120)
T d1ypzf1 84 YSLEEEDEAIYYCSY 98 (120)
T ss_dssp CSCCGGGCSEEEEEE
T ss_pred cccccccceeEEEEE
Confidence 999999999999987
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.30 E-value=4.1e-07 Score=53.98 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=43.0
Q ss_pred CceEEecCC----CcEEEEEecCCe---eEEecc--eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH---ILTTNI--YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~---~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..|.|+|+..+. .+.... .......++.... ..++.+|.|.+++.+|+|.|.|...
T Consensus 20 l~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCa~~ 93 (112)
T d1lgva1 20 VSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGLQAEDEADYYCSSY 93 (112)
T ss_dssp EEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcCccccCEEEEEeee
Confidence 579887653 469999964322 221111 1111235666654 3468999999999999999999884
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.30 E-value=1.3e-06 Score=51.72 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=42.1
Q ss_pred CceEEecCC------CcEEEEEecCCe---eEEec-ceEec-CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLH---ILTTN-IYTYT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~---~~~~~-~~~~~-~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.. .-+.|+++..+. .+... ..... ...||.... ..+++.|.|.+++.+|+|.|.|...
T Consensus 21 l~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~--~~~~~~L~I~~~~~eDsAvYYC~~~ 96 (112)
T d1ncwl1 21 ISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG--SGTDFTLKISRVEAEDLGVYYCWQG 96 (112)
T ss_dssp EEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC--CCCEEEEEECccccCcCEeEEEEcC
Confidence 578865432 468999974322 22222 22111 235776654 3468999999999999999999763
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.29 E-value=3.4e-06 Score=49.96 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=40.4
Q ss_pred CceEEecCCCcEEEEEecCCee---EEe---cce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHI---LTT---NIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~---~~~---~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|........+.|+|+..+.. +.. +.. ......++..... .....+|.|.+++.+|+|.|.|...
T Consensus 19 l~C~~s~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~DSa~YyCa~~ 92 (114)
T d1ogae1 19 LSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSAQKNPTAFYLCASS 92 (114)
T ss_dssp ECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSCCSCCCEEEEEEEE
T ss_pred EEEEEecCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcc-cCCeEEEEECcCCcCCceeEEEeec
Confidence 5798753338899999754322 211 011 1111234443332 3457789999999999999999874
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.29 E-value=5.3e-07 Score=53.53 Aligned_cols=66 Identities=20% Similarity=0.389 Sum_probs=48.7
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEe---------cc-eEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTT---------NI-YTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~---------~~-~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.|.. ..+.|+|+.++.-+.. +. ..+. ..+|+.+..+...+...|.|.+++.+|++.|.|.
T Consensus 20 LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCA 99 (121)
T d1nfdf1 20 VSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCT 99 (121)
T ss_dssp EEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCGGGCEECEEE
T ss_pred EEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCCCcceEEEEe
Confidence 689999987 6789999754433211 11 1121 2468888887667888999999999999999997
Q ss_pred e
Q psy3125 66 V 66 (163)
Q Consensus 66 ~ 66 (163)
.
T Consensus 100 r 100 (121)
T d1nfdf1 100 R 100 (121)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=1.1e-06 Score=51.48 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=40.3
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcCCC
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKRDA 139 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~D~ 139 (163)
..|..+.+..|..+.+.|.. .....+.|++.. .|+.... .....+|+|++++.+|+
T Consensus 6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~Ds 83 (106)
T d1i8ka_ 6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSEDV 83 (106)
T ss_dssp EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGC
T ss_pred eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CCCeeeecccCCccccC
Confidence 33445566777777777742 112346666431 1333322 12467799999999999
Q ss_pred eeEEEEc
Q psy3125 140 GIYECQV 146 (163)
Q Consensus 140 G~Y~C~a 146 (163)
|.|.|.+
T Consensus 84 a~YyCa~ 90 (106)
T d1i8ka_ 84 GDYYCLQ 90 (106)
T ss_dssp EEEEEEE
T ss_pred EEEeEec
Confidence 9999987
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.29 E-value=2.6e-06 Score=50.34 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=41.5
Q ss_pred EEcCCCceEeeCCCeEEEecCC---C---CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecc
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD---L---LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDY 133 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~---~---~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~ 133 (163)
+...|..+.+.+|..+.+.|.. . ....+.|++..+ |+.... ......|+|++
T Consensus 4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~~~~~~L~I~~ 81 (111)
T d2gsia1 4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--SGTDFTLNIHP 81 (111)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--CCCchhccccc
Confidence 3344455667788888888831 1 112367775421 222221 12356799999
Q ss_pred cCcCCCeeEEEEc
Q psy3125 134 AQKRDAGIYECQV 146 (163)
Q Consensus 134 v~~~D~G~Y~C~a 146 (163)
++++|+|.|.|.+
T Consensus 82 ~~~~DsA~YyCa~ 94 (111)
T d2gsia1 82 VEEEDAATYYCSH 94 (111)
T ss_dssp CCGGGCEEEEEEE
T ss_pred ccccCCceEEEEE
Confidence 9999999999987
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=1.5e-06 Score=51.06 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=42.4
Q ss_pred EEcCCCceEeeCCCeEEEecCCC--CceeEEEEeCC--C------------------eEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGD--A------------------RFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
+...|..+.+..|..+.+.|... ....+.|++.. + ++.... ......|.|++++.+
T Consensus 4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~ 81 (107)
T d1c5cl1 4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SGSDYSLTISSLESE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cCCEEEEEEhhhccc
Confidence 33445556677888888888532 22346777532 2 111111 234568999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 82 Dsa~YyCa~ 90 (107)
T d1c5cl1 82 DFADYYCLQ 90 (107)
T ss_dssp GCSEEEEEE
T ss_pred CCeEEEEec
Confidence 999999987
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.29 E-value=2.1e-06 Score=50.49 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=40.5
Q ss_pred cCCCceEeeCCCeEEEecCC--C-CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCC
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--L-LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
..|....+..|..+.+.|.. . ....+.|++..+ ++.... ......|+|++++.+|
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--SGTDFTLTISRLEPED 83 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--CCCEEEEEehHheecc
Confidence 44455667777888888842 1 223566765421 222221 1235679999999999
Q ss_pred CeeEEEEc
Q psy3125 139 AGIYECQV 146 (163)
Q Consensus 139 ~G~Y~C~a 146 (163)
+|.|.|.+
T Consensus 84 sa~YyCa~ 91 (108)
T d2fx7l1 84 FAVYYCQQ 91 (108)
T ss_dssp CSEEEEEE
T ss_pred cEEEeeec
Confidence 99999988
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.29 E-value=2.5e-06 Score=50.33 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=49.8
Q ss_pred EeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCC--------CCceEEEEecccCcCCCe---eEEEEc-CCCCCc
Q psy3125 88 RLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQ--------NSDEWNMKIDYAQKRDAG---IYECQV-NTEPKM 152 (163)
Q Consensus 88 ~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G---~Y~C~a-~~~~~~ 152 (163)
.+.+|..+.+.|.. .+.+.+.|++++......... ......|.|.+++.+|+| .|.|.| |..+..
T Consensus 13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~ 92 (111)
T d1biha2 13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 92 (111)
T ss_dssp CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence 34579999999964 366789998875433211100 011235999999998877 799999 888888
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
+..+.+.+
T Consensus 93 ~~~~~~~~ 100 (111)
T d1biha2 93 EVVLVEYE 100 (111)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEE
Confidence 77664443
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.28 E-value=2.6e-06 Score=50.49 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=42.5
Q ss_pred EEcCCCceEeeCCCeEEEecCCC--------CceeEEEEeCCC--------------------eEEEecCCCCceEEEEe
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL--------LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKI 131 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i 131 (163)
|...|..+.+.+|..+.+.|... ....+.|++... ++... .......|.|
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~s~~~~~L~I 81 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGTDFTLTI 81 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEE
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--CCCCeEeEEe
Confidence 44445566777888888888311 123477775421 22221 1234567999
Q ss_pred cccCcCCCeeEEEEc
Q psy3125 132 DYAQKRDAGIYECQV 146 (163)
Q Consensus 132 ~~v~~~D~G~Y~C~a 146 (163)
++++++|+|.|.|.+
T Consensus 82 ~~l~~~Dsa~YyCA~ 96 (113)
T d1q9ra1 82 TSVQAEDLAVYYCKQ 96 (113)
T ss_dssp SSCCGGGCEEEEEEE
T ss_pred cccccCCCeEEEecc
Confidence 999999999999987
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.27 E-value=2e-06 Score=50.44 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=41.5
Q ss_pred EEcCCCceEeeCCCeEEEecCCC--CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...|..+.+.+|..+.+.|... ......|++..+ +|.... ......|.|.+++.+
T Consensus 4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~ 81 (107)
T d1d5il1 4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SGQDYSLTISSLEYE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cCCEEEccccccCCc
Confidence 34444556677788888888522 123456664321 333222 134567999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|+|.+
T Consensus 82 Dsa~YyCa~ 90 (107)
T d1d5il1 82 DMGIYYCLQ 90 (107)
T ss_dssp GCEEEEEEE
T ss_pred CCEEEEeee
Confidence 999999987
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=2.9e-06 Score=50.16 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=39.8
Q ss_pred CceEEecCCCcEEEEEecCCe---eEEe---cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH---ILTT---NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~---~~~~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|........|.|+|+..+. ++.. ...... ...++.... ......+|.|.+++.+|+|.|.|.+.
T Consensus 18 L~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~Dsa~YyCA~~ 91 (112)
T d2cdeb1 18 LECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR-IRTEHFPLTLESARPSHTSQYLCASS 91 (112)
T ss_dssp CEEEETTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC-SSSSBCCEEBSSCCTTTCSEEEEEEE
T ss_pred EEEEEeCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec-CCCCceEeeeccccccccccEEEEEe
Confidence 689865333789999975322 2211 111111 112333332 23456789999999999999999874
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.26 E-value=1.8e-06 Score=50.88 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=44.5
Q ss_pred EEcCCCceEeeCCCeEEEecCC--CCceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKR 137 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~ 137 (163)
|...+..+.+..|..+.+.|.. .....+.|++.. .++............|.|++++++
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 5555666778888888888842 122346676432 123333333344567999999999
Q ss_pred CCeeEEEEc
Q psy3125 138 DAGIYECQV 146 (163)
Q Consensus 138 D~G~Y~C~a 146 (163)
|+|.|.|.+
T Consensus 83 Dsa~YyCA~ 91 (110)
T d1ac6a_ 83 DSAVYYCAL 91 (110)
T ss_dssp GCEEEEEEE
T ss_pred CCcccceee
Confidence 999999987
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=2.1e-06 Score=50.73 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=24.3
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEcC
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 147 (163)
|+.+.........+|+|.+++.+|+|.|.|.+.
T Consensus 67 r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~ 99 (118)
T d1qfoa_ 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFE 99 (118)
T ss_dssp TEEECSCGGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred CeEEEEeCcCCEEEEEECCCChhHCEEEEEEEE
Confidence 344433333345679999999999999999993
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.26 E-value=4.7e-07 Score=53.26 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=43.1
Q ss_pred EEEcCCCceEeeCCCeEEEecCCC--CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
+|...|....+.+|..+.+.|... ......|++... ++... .......|+|.++++
T Consensus 3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~ 80 (107)
T d1tjgl1 3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS--GSGTEFTLTISTLRP 80 (107)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCG
T ss_pred cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe--ccCCEEEEEecccee
Confidence 344445566677788888888532 234666765321 22222 123467799999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 81 ~DsA~YyCa~ 90 (107)
T d1tjgl1 81 EDFATYYCQQ 90 (107)
T ss_dssp GGCSEEEEEE
T ss_pred CcCceEEEEE
Confidence 9999999987
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.26 E-value=1.7e-06 Score=51.03 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=40.5
Q ss_pred CceEEecCCCcEEEEEecCCe----eEEe--cce-Eec-CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH----ILTT--NIY-TYT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~----~~~~--~~~-~~~-~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.-..|.|+|+..+. ++.. ... ... ...++..... ....++|.|.+++.+|+|.|.|...
T Consensus 21 l~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~ 94 (110)
T d2aq2a1 21 LSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRP-SQEQFSLILESATPSQTSVYFCASG 94 (110)
T ss_dssp EEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEE-ETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEec-cCCEEEEEECCCCHhhCEEEEEeeC
Confidence 579876533789999975432 2211 111 111 1223333321 2457899999999999999999884
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.25 E-value=3.3e-07 Score=54.12 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=43.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|...... ..+.|+|+..+ ..+....... ....|+.... +.+..+|.|.+++.+|+|.|.|...
T Consensus 20 l~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsavYyCA~~ 90 (109)
T d1w72l1 20 ITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN--SGNMATLTISRVEAGDEADYYCQVW 90 (109)
T ss_dssp EEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec--CCCccceEEeeeccCCCEEEEEEec
Confidence 578876655 78999996432 2222111111 1235666654 3468899999999999999999984
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.25 E-value=3.2e-06 Score=49.46 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=40.0
Q ss_pred CceEeeCCCeEEEecCCC--CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 85 RGARLSAGPLLNFAFPDL--LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
+.+.+.+|..+.+.|... ....+.|++..+ ++.... ......|.|++++++|+|.|
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~Y 85 (106)
T d1lk3l1 8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIY 85 (106)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--CCCEEEeEECCcChhhCCCc
Confidence 356777888888888532 223566764421 222222 13456899999999999999
Q ss_pred EEEc
Q psy3125 143 ECQV 146 (163)
Q Consensus 143 ~C~a 146 (163)
.|.+
T Consensus 86 yCa~ 89 (106)
T d1lk3l1 86 FCQQ 89 (106)
T ss_dssp EEEE
T ss_pred cccc
Confidence 9977
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.24 E-value=7.8e-06 Score=48.29 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=41.5
Q ss_pred EEcCCCceEeeCCCeEEEecCCC-CceeEEEEeCC--CeE-----------------EEecCCCCceEEEEecccCcCCC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL-LTTNIYTYTGD--ARF-----------------SVIHPQNSDEWNMKIDYAQKRDA 139 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~L~i~~v~~~D~ 139 (163)
|...|..+.+..|..+.+.|... ....+.|++.. +.. ............|.|++++.+|+
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS 83 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred eEECCCEEEEcCCCCEEEEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence 44445556677778888888522 22356676532 111 11111223456799999999999
Q ss_pred eeEEEEc
Q psy3125 140 GIYECQV 146 (163)
Q Consensus 140 G~Y~C~a 146 (163)
|.|.|.+
T Consensus 84 a~YyCa~ 90 (113)
T d1h5ba_ 84 GTYFCAA 90 (113)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999988
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.23 E-value=4.9e-06 Score=49.99 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=25.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|+|.|.|.+
T Consensus 67 ~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~ 99 (123)
T d1hxmb1 67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCAL 99 (123)
T ss_dssp TSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceeEEeeeccccceeecccccccccCcEEEEee
Confidence 356655444445678999999999999999986
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.22 E-value=3.4e-06 Score=49.61 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=40.3
Q ss_pred cCCCceEeeCCCeEEEecCCC--CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCC
Q psy3125 82 DRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDA 139 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~ 139 (163)
..|..+.+.+|..+.+.|... ....+.|++..+ ++.... ......|.|++++++|+
T Consensus 6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DS 83 (109)
T d1mqkl_ 6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPEDF 83 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGC
T ss_pred CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccccCC
Confidence 334455666777777777432 223466765321 222221 23467799999999999
Q ss_pred eeEEEEc
Q psy3125 140 GIYECQV 146 (163)
Q Consensus 140 G~Y~C~a 146 (163)
|.|.|.+
T Consensus 84 a~YyCA~ 90 (109)
T d1mqkl_ 84 GSYYCQH 90 (109)
T ss_dssp EEEEEEE
T ss_pred eeEEEee
Confidence 9999987
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.22 E-value=5.4e-06 Score=49.00 Aligned_cols=66 Identities=12% Similarity=0.233 Sum_probs=40.4
Q ss_pred CceEEecCCCcEEEEEecCCe---eEEe---cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLH---ILTT---NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~---~~~~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|........+.|+|+..+. ++.. +..... ...++..... ......|.|.+++.+|+|.|.|.+.
T Consensus 20 l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~Dsa~YyCa~~ 93 (113)
T d1j8he1 20 LECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSRE-KKERFSLILESASTNQTSMYLCASS 93 (113)
T ss_dssp ECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECS-STTBCEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEec-cCcEeeeEeccCccCCcccEEeeEc
Confidence 578764323778999975432 2211 111111 1234444432 3457889999999999999999984
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.21 E-value=2.7e-06 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|+|.+++.+|+|.|.|.+
T Consensus 76 ~~~~~L~I~~~~~~Dsg~Y~Ca~ 98 (115)
T d2atpb1 76 SRRPFLSIMNVKPEDSDFYFCAT 98 (115)
T ss_dssp SSSCEEEECSCCGGGCEEEEEEE
T ss_pred CCeEEEeecccCCCCCcEEEEeE
Confidence 44567999999999999999988
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.20 E-value=1.4e-06 Score=51.28 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=43.3
Q ss_pred EEEcCCCceEeeCCCeEEEecCCCC--ceeEEEEeCCC----eEEEe--------------cCCCCceEEEEecccCcCC
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDLL--TTNIYTYTGDA----RFSVI--------------HPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~--------------~~~~~~~~~L~i~~v~~~D 138 (163)
+|...|..+.+..|..+.+.|.... ...+.|+.... .+.+. ........+|+|++++.+|
T Consensus 3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D 82 (108)
T d1jhll_ 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED 82 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence 3445555667778888888885322 23567774421 11110 0112345679999999999
Q ss_pred CeeEEEEc
Q psy3125 139 AGIYECQV 146 (163)
Q Consensus 139 ~G~Y~C~a 146 (163)
+|.|.|.+
T Consensus 83 sa~YyCA~ 90 (108)
T d1jhll_ 83 FAMYICQQ 90 (108)
T ss_dssp CSEEEEEE
T ss_pred ceEEEEee
Confidence 99999987
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.20 E-value=1.6e-06 Score=51.43 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=41.0
Q ss_pred CceEEecCCCcEEEEEecCC---eeE-E-e-cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDL---HIL-T-T-NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~---~~~-~-~-~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.....-..|.|+|+..+ ..+ . . +..... ...||..... .....+|.|.+++.+|+|.|.|.+.
T Consensus 21 l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~ 94 (113)
T d1nfdb1 21 LTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALELEDSAMYFCASS 94 (113)
T ss_dssp EEEECCTTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEEC-TTSCEEEECCSCCGGGCEEECEEEE
T ss_pred EEEEeCCCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcC-CCCeEEEEecccCcCCceeEEEEee
Confidence 57875433377999996432 222 1 1 111111 1346655432 2346799999999999999999874
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.20 E-value=1.2e-06 Score=51.15 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCCceEeeCCCeEEEecCCC-CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCee
Q psy3125 83 RGRGARLSAGPLLNFAFPDL-LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|..+.+..|..+.+.|... ......|++..+ ++.... .....+|.|.+++.+|+|.
T Consensus 6 sP~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~ 83 (104)
T d1yqvl1 6 SPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMETEDAAT 83 (104)
T ss_dssp ESSEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred cCCeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCcccCCe
Confidence 34445566677777777421 122345664321 222221 2345779999999999999
Q ss_pred EEEEc
Q psy3125 142 YECQV 146 (163)
Q Consensus 142 Y~C~a 146 (163)
|.|.+
T Consensus 84 YyCa~ 88 (104)
T d1yqvl1 84 YYCQQ 88 (104)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99987
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=2.4e-06 Score=50.68 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...|+|++++.+|+|.|.|.+
T Consensus 76 ~~~L~I~~l~~~Dsg~YyCa~ 96 (114)
T d1akjd_ 76 TFVLTLSDFRRENEGYYFCSA 96 (114)
T ss_dssp EEEEEESSCCGGGCEEEEEEE
T ss_pred ChhcEEccCCCCCCEEEeEeE
Confidence 567999999999999999998
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.1e-06 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.6
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..+|.|++++.+|+|.|.|.+
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~V 84 (105)
T d1dr9a1 64 NLSIVILALRPSDEGTYECVV 84 (105)
T ss_dssp TTEEEECSCCGGGCEEEEEEE
T ss_pred cEEEEECcCChHHCeEEEEEE
Confidence 457999999999999999998
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.19 E-value=1.6e-06 Score=51.29 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=41.6
Q ss_pred EEcCCCceEeeCCCeEEEecCC---C---CceeEEEEeCCC----eEEE--------------ecCCCCceEEEEecccC
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPD---L---LTTNIYTYTGDA----RFSV--------------IHPQNSDEWNMKIDYAQ 135 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~---~---~~~~~~~~~~~~----~~~~--------------~~~~~~~~~~L~i~~v~ 135 (163)
|...|+.+.+.+|..+.+.|.. . ....+.|++... ++.+ ..........|.|++++
T Consensus 4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 83 (111)
T d1j05a_ 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE 83 (111)
T ss_dssp EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence 3344555667778888888841 1 112366775421 1111 11122356789999999
Q ss_pred cCCCeeEEEEc
Q psy3125 136 KRDAGIYECQV 146 (163)
Q Consensus 136 ~~D~G~Y~C~a 146 (163)
.+|+|.|.|.+
T Consensus 84 ~~Dsa~YyCa~ 94 (111)
T d1j05a_ 84 ADDVATYYCQQ 94 (111)
T ss_dssp GGGCEEEEEEE
T ss_pred cccCccEEEee
Confidence 99999999988
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.18 E-value=1.9e-06 Score=51.64 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=43.8
Q ss_pred EEEcCCCceEeeCCCeEEEecCCC----CceeEEEEeCC--------------------CeEEEecCCCCceEEEEeccc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDL----LTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYA 134 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v 134 (163)
+|...+..+.+..|..+.+.|... ....+.|++.. .|+............|.|.++
T Consensus 3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~ 82 (120)
T d1hxma1 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (120)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence 344555566677788888888421 12346676431 133333222234578999999
Q ss_pred CcCCCeeEEEEc
Q psy3125 135 QKRDAGIYECQV 146 (163)
Q Consensus 135 ~~~D~G~Y~C~a 146 (163)
+++|+|.|.|..
T Consensus 83 ~~~Dsa~YyCA~ 94 (120)
T d1hxma1 83 SERDEGSYYCAC 94 (120)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccCCceeecCc
Confidence 999999999988
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.18 E-value=2.5e-06 Score=50.46 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=41.9
Q ss_pred cCCCceEeeCCCeEEEecCC-------CCceeEEEEeCCC--------------------eEEEecCCCCceEEEEeccc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD-------LLTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYA 134 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v 134 (163)
..|+.+.+.+|..+.+.|.. .....+.|+...+ |+... .......|.|+++
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~--~s~~~~~L~Is~~ 83 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS--GSGTAFTLRISRV 83 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--ECSSEEEEEESSC
T ss_pred ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee--cCCCEEEEEECCc
Confidence 44556677788888888842 1134567774421 22222 1234677999999
Q ss_pred CcCCCeeEEEEc
Q psy3125 135 QKRDAGIYECQV 146 (163)
Q Consensus 135 ~~~D~G~Y~C~a 146 (163)
+.+|++.|.|..
T Consensus 84 ~~~DsAvYyCa~ 95 (112)
T d1mjul1 84 EAEDVGVYYCLQ 95 (112)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccCCceEEEEe
Confidence 999999999966
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.16 E-value=4.4e-06 Score=49.58 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=38.8
Q ss_pred CceEeeCCCeEEEecCCCC-ceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCeeEE
Q psy3125 85 RGARLSAGPLLNFAFPDLL-TTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 143 (163)
..+.+..|..+.+.|.... ...+.|++... ++.+..........|.|.+++.+|+|.|+
T Consensus 8 ~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (115)
T d1ogad1 8 QFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL 87 (115)
T ss_dssp SEEEEETTCCEEEEEECSSCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred CeEEECCCCCEEEEEEECCCCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence 3455666667777774321 23455554311 22222233445778999999999999999
Q ss_pred EEc
Q psy3125 144 CQV 146 (163)
Q Consensus 144 C~a 146 (163)
|.+
T Consensus 88 Ca~ 90 (115)
T d1ogad1 88 CAG 90 (115)
T ss_dssp EEE
T ss_pred ccc
Confidence 987
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.14 E-value=2.5e-06 Score=50.42 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=40.5
Q ss_pred CceEEecCCCcEEEEEecCCee---E---EecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHI---L---TTNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~---~---~~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|........|.|+|+..+.. + ......... ..++.... ...++.+|.|.+++.+|+|.|.|...
T Consensus 19 l~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsavYyCA~~ 92 (112)
T d2bnub1 19 LQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR-STTEDFPLRLLSAAPSQTSVYFCASS 92 (112)
T ss_dssp EEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC-SSSSBCCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEec-CCCCEEEEEECCCCHHHCEEEEEeec
Confidence 5798764447899999643321 1 111111111 13333332 23456789999999999999999873
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.13 E-value=3.8e-06 Score=49.15 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCceEeeCCCeEEEecCCC--CceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcCCCee
Q psy3125 84 GRGARLSAGPLLNFAFPDL--LTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
|..+.+.+|..+.+.|... ....+.|++.. .++.... ......|.|.+++++|+|.
T Consensus 7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~ 84 (106)
T d1op3k1 7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--SGTEFTLTISGLQFDDFAT 84 (106)
T ss_dssp CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGCSE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--cCCEEEEEEccccccCCCc
Confidence 3445566777777777421 12345566432 1333222 2345679999999999999
Q ss_pred EEEEc
Q psy3125 142 YECQV 146 (163)
Q Consensus 142 Y~C~a 146 (163)
|.|.+
T Consensus 85 YyCa~ 89 (106)
T d1op3k1 85 YHCQH 89 (106)
T ss_dssp EEEEE
T ss_pred Eeeee
Confidence 99987
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.13 E-value=4.7e-06 Score=49.12 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=40.1
Q ss_pred CceEeeCCCeEEEecCCC----CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCe
Q psy3125 85 RGARLSAGPLLNFAFPDL----LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G 140 (163)
+.+.+.+|..+.+.|... ....+.|++..+ |+.... .....+|.|.+++++|+|
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsa 85 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGLQTGDEA 85 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCS
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeeeccccCc
Confidence 356777788888888432 123467774421 232222 234578999999999999
Q ss_pred eEEEEc
Q psy3125 141 IYECQV 146 (163)
Q Consensus 141 ~Y~C~a 146 (163)
.|.|.+
T Consensus 86 ~YyCA~ 91 (111)
T d1rzfl1 86 DYYCGT 91 (111)
T ss_dssp EEEEEE
T ss_pred ceEEee
Confidence 999988
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.13 E-value=5.8e-06 Score=48.55 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=40.2
Q ss_pred EEEcCCCceEeeCCCeEEEecCCC--CceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
+|...|..+.+..|..+.+.|... ....+.|++.. .++.... ......|+|++++.
T Consensus 5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~l~~ 82 (109)
T d1bwwa_ 5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG--SGTDYTFTISSLQP 82 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC--CCCEeEEEEeecee
Confidence 344444455666677777777422 12345566431 1333222 12356799999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 83 ~Dsa~YyCA~ 92 (109)
T d1bwwa_ 83 EDIATYYCQQ 92 (109)
T ss_dssp GGCEEEEEEE
T ss_pred CcCceEEEee
Confidence 9999999987
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.09 E-value=5.7e-06 Score=47.26 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=26.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+...........+|+|++++++|+|.|.|.+
T Consensus 44 ~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~ 76 (94)
T d2gj6d1 44 GRFTAQLNKASQYVSLLIRDSQPSDSATYLCAV 76 (94)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcEEEEecCCCCEEeEEeeccccCcCccceeeE
Confidence 355554434455678999999999999999988
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.09 E-value=9.1e-06 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.5
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|.|.+++++|+|.|.|.+
T Consensus 74 ~~~~~L~i~~~~~~Dsa~YyCa~ 96 (118)
T d2ij0c1 74 PTLSTLTVTSAHPEDSGFYVCSA 96 (118)
T ss_dssp SSEEEEEECSCCGGGCEEEEEEE
T ss_pred cccccccccccccccCceEEEEE
Confidence 34567999999999999999988
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=9.4e-06 Score=47.71 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=26.2
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+.........+|+|.+++.+|+|.|.|..
T Consensus 60 R~sis~d~~~~~~~lti~~L~~eDsa~YyCa~ 91 (110)
T d1u9ka_ 60 KFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVI 91 (110)
T ss_dssp TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEECCCCEEEEEECccccCCCEEEEEEE
Confidence 56665544456788999999999999999987
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.07 E-value=8.3e-06 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|+|.+++++|+|.|.|.+
T Consensus 71 ~~~~L~I~~~~~~Dsa~YyCa~ 92 (112)
T d1kgce1 71 SVSTLKIQRTQQEDSAVYLCAS 92 (112)
T ss_dssp SCEEEEESSCCGGGCEEEEEEE
T ss_pred CEEEEEECCCCcCCCEEEEEee
Confidence 4567999999999999999988
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.07 E-value=9.6e-06 Score=48.00 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=41.3
Q ss_pred CceEeeCCCeEEEecCCC----CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCe
Q psy3125 85 RGARLSAGPLLNFAFPDL----LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAG 140 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G 140 (163)
+.+.+.+|..+.+.|... ....+.|++..+ ++.... ......|.|.+++.+|++
T Consensus 8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~DsA 85 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGLESEDEA 85 (114)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCE
T ss_pred CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEecccCcccCc
Confidence 356777888899998531 234577885532 222221 133567999999999999
Q ss_pred eEEEEc
Q psy3125 141 IYECQV 146 (163)
Q Consensus 141 ~Y~C~a 146 (163)
.|+|.+
T Consensus 86 ~YyCA~ 91 (114)
T d2rhea_ 86 DYYCAA 91 (114)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 999987
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.07 E-value=7.3e-06 Score=48.13 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=40.8
Q ss_pred CceEeeCCCeEEEecCCCC--ceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 85 RGARLSAGPLLNFAFPDLL--TTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
+.+.+.+|..+.+.|.... ...+.|++..+ ++.... ......|.|.+++.+|+|.|
T Consensus 8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsavY 85 (109)
T d1w72l1 8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN--SGNMATLTISRVEAGDEADY 85 (109)
T ss_dssp SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec--CCCccceEEeeeccCCCEEE
Confidence 3566778888888886322 34677874422 121111 13456799999999999999
Q ss_pred EEEc
Q psy3125 143 ECQV 146 (163)
Q Consensus 143 ~C~a 146 (163)
.|.+
T Consensus 86 yCA~ 89 (109)
T d1w72l1 86 YCQV 89 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9988
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.04 E-value=2.1e-05 Score=46.36 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=42.1
Q ss_pred EEEcCCCceEeeCCCeEEEecCC-CCceeEEEEeCCC-----------------------eEEEecCCCCceEEEEeccc
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPD-LLTTNIYTYTGDA-----------------------RFSVIHPQNSDEWNMKIDYA 134 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~L~i~~v 134 (163)
+|...|....+..|..+.+.|.. .....+.|++..+ ++.... .......|.|.++
T Consensus 2 ~V~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~ 80 (113)
T d1j8he1 2 KVTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EKKERFSLILESA 80 (113)
T ss_dssp CEEESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SSTTBCEEEESSC
T ss_pred EEEccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-ccCcEeeeEeccC
Confidence 35555555667778888888852 2223556664321 111111 2233467999999
Q ss_pred CcCCCeeEEEEc
Q psy3125 135 QKRDAGIYECQV 146 (163)
Q Consensus 135 ~~~D~G~Y~C~a 146 (163)
+.+|+|.|.|.+
T Consensus 81 ~~~Dsa~YyCa~ 92 (113)
T d1j8he1 81 STNQTSMYLCAS 92 (113)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccCCcccEEeeE
Confidence 999999999988
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.04 E-value=1.3e-05 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|+|++++.+|+|.|.|.+
T Consensus 70 ~~~~~L~i~~~~~~Dsa~YyCa~ 92 (111)
T d2esve1 70 GTYSTLKVQPAELEDSGVYFCAS 92 (111)
T ss_dssp SSSEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEEECCcccCCCceEEEee
Confidence 34568999999999999999986
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.03 E-value=1.8e-05 Score=46.59 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=39.6
Q ss_pred CCceEeeCCCeEEEecCCC-------CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCc
Q psy3125 84 GRGARLSAGPLLNFAFPDL-------LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~ 136 (163)
|..+.+..|..+.+.|... ....+.|+...+ ++... .......|.|+++++
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~--~~~~~~~L~I~~~~~ 85 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS--GSGTDFTLKISRVEA 85 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCG
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee--CCCCEEEEEECcccc
Confidence 4456677788888888421 123467775422 22111 112456799999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|+|..
T Consensus 86 eDsAvYYC~~ 95 (112)
T d1ncwl1 86 EDLGVYYCWQ 95 (112)
T ss_dssp GGCEEEEEEE
T ss_pred CcCEeEEEEc
Confidence 9999999976
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=6.3e-06 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|.|++++.+|+|.|.|.+
T Consensus 71 ~~~~L~I~~~~~~Dsa~YyCa~ 92 (110)
T d1oaql_ 71 NKAALTITGAQTEDEAIYFCAL 92 (110)
T ss_dssp TEEEEEEESCCGGGCEEEEEEE
T ss_pred cceeeecCCCCccccEeEEEEc
Confidence 4578999999999999999987
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.01 E-value=1.2e-05 Score=47.49 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=41.8
Q ss_pred EEcCCCceEeeCCCeEEEecCCC-------CceeEEEEeCCC--------------------eEEEecCCCCceEEEEec
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL-------LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKID 132 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~ 132 (163)
|...|....+..|..+.+.|... ....+.|++... +|.... ......|.|+
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~ 82 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKIS 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEES
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCccC
Confidence 33444556677788888888521 113467774421 222221 2345789999
Q ss_pred ccCcCCCeeEEEEc
Q psy3125 133 YAQKRDAGIYECQV 146 (163)
Q Consensus 133 ~v~~~D~G~Y~C~a 146 (163)
+++.+|+|.|+|..
T Consensus 83 ~~~~~DsavYyCa~ 96 (113)
T d1n4xl_ 83 RVEAEDLGIYYCFQ 96 (113)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred CCCcccCEEEEEEE
Confidence 99999999999976
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.01 E-value=3.5e-05 Score=45.26 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=40.2
Q ss_pred CceEeeCCCeEEEecCCC-----CceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCC
Q psy3125 85 RGARLSAGPLLNFAFPDL-----LTTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDA 139 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~ 139 (163)
..+.+.+|..+.+.|... ....+.|++..+ ++.... ......|.|.+++++|+
T Consensus 8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Ds 85 (112)
T d1lgva1 8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGLQAEDE 85 (112)
T ss_dssp SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcCccccC
Confidence 456677788888888532 123467875421 222221 13467799999999999
Q ss_pred eeEEEEc
Q psy3125 140 GIYECQV 146 (163)
Q Consensus 140 G~Y~C~a 146 (163)
|.|+|.+
T Consensus 86 a~YyCa~ 92 (112)
T d1lgva1 86 ADYYCSS 92 (112)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9999988
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.00 E-value=1.6e-05 Score=47.00 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=40.9
Q ss_pred EcCCCceEeeCCCeEEEecCCC-CceeEEEEeCCC----e-------------------EEEecCCCCceEEEEecccCc
Q psy3125 81 DDRGRGARLSAGPLLNFAFPDL-LTTNIYTYTGDA----R-------------------FSVIHPQNSDEWNMKIDYAQK 136 (163)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~~L~i~~v~~ 136 (163)
...|....+..|..+.+.|... ....+.|++..+ + +.... ......+|+|++++.
T Consensus 3 tQsP~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~ 81 (114)
T d1ogae1 3 TQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR-EKKESFPLTVTSAQK 81 (114)
T ss_dssp ECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECC-SSTTBCCEEECSCCS
T ss_pred EEcCCeEEEcCCCCEEEEEEEecCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEc-ccCCeEEEEECcCCc
Confidence 3444556677788888888532 223566764422 1 11111 123345699999999
Q ss_pred CCCeeEEEEc
Q psy3125 137 RDAGIYECQV 146 (163)
Q Consensus 137 ~D~G~Y~C~a 146 (163)
+|+|.|.|.+
T Consensus 82 ~DSa~YyCa~ 91 (114)
T d1ogae1 82 NPTAFYLCAS 91 (114)
T ss_dssp CCCEEEEEEE
T ss_pred CCceeEEEee
Confidence 9999999987
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.00 E-value=6.6e-07 Score=51.55 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...|.|.+++.+|+|.|.|.+
T Consensus 63 ~~~L~I~~~~~~Dsa~YyCA~ 83 (96)
T d1ymmd1 63 SSSLLITASRAADTASYFCAT 83 (96)
T ss_dssp BCCBCCSSCCSTTCSCCEEEE
T ss_pred ecccCcCCCCcccCEEEeEeE
Confidence 456999999999999999988
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.00 E-value=1e-05 Score=47.77 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.4
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....+|+|++++++|+|.|.|.+
T Consensus 69 ~~~~~L~I~~~~~~Dsa~YyCA~ 91 (113)
T d2ntsp1 69 NSRSEMNVSTLELGDSALYLCAS 91 (113)
T ss_dssp TSCEEEEECSCCGGGCEEEEEEE
T ss_pred CCeeEEEECCCCcccceeeeeee
Confidence 34567999999999999999987
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=5.6e-06 Score=47.72 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=47.6
Q ss_pred eEeeCCCeEEEecCCCCc-eeEEEEeCCC-eEEEe----cCCCCceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT-TNIYTYTGDA-RFSVI----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIM 157 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~ 157 (163)
..|..|..+.+.|..... ....+++.+. ..... .........+.|.+++.+|+|.|+|.. +... ..|..+.
T Consensus 16 ~~V~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~ 95 (99)
T d1ucta1 16 PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE 95 (99)
T ss_dssp SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEE
T ss_pred CceeCCCeEEEEEcCCCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEE
Confidence 467789999999976443 3455555433 12111 111233456999999999999999998 4432 3567777
Q ss_pred EEE
Q psy3125 158 LNV 160 (163)
Q Consensus 158 L~V 160 (163)
|.|
T Consensus 96 L~V 98 (99)
T d1ucta1 96 LVV 98 (99)
T ss_dssp EEE
T ss_pred EEe
Confidence 776
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=3.7e-05 Score=44.84 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=26.3
Q ss_pred eEEEEecccCcCCCeeEEEEcC-CC--CC---ccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQVN-TE--PK---MNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a~-~~--~~---~~~~~~L~V~ 161 (163)
..+|+|++++.+|+|.|.|.+. .. +. ....+.|.|.
T Consensus 68 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred eEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence 3569999999999999999982 22 22 1446677764
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.96 E-value=2.8e-05 Score=46.54 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=27.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|++++.+|++.|+|..
T Consensus 67 ~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr 99 (126)
T d1etzb1 67 SRLTVSKDTSSNQVFLKITSVDTSDTATYHCAR 99 (126)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EeeEEecccCCcEEEcceecccccccceEEEEE
Confidence 467776655566788999999999999999975
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.95 E-value=1.5e-06 Score=51.01 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=43.7
Q ss_pred EEEcCCCceEeeCCCeEEEecCCC--CceeEEEEeCCC--eEE--Ee--------------cCCCCceEEEEecccCcCC
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDL--LTTNIYTYTGDA--RFS--VI--------------HPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~--~~--------------~~~~~~~~~L~i~~v~~~D 138 (163)
+|...|..+.+..|..+.+.|... ....+.|++... ... +. ........+|.|++++++|
T Consensus 3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 82 (107)
T d3cx5k1 3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED 82 (107)
T ss_dssp CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence 344555567778888899998522 223577875432 111 10 0011235689999999999
Q ss_pred CeeEEEEc
Q psy3125 139 AGIYECQV 146 (163)
Q Consensus 139 ~G~Y~C~a 146 (163)
+|.|.|.+
T Consensus 83 sa~YyCa~ 90 (107)
T d3cx5k1 83 IATYFCQH 90 (107)
T ss_dssp CSEEEEEE
T ss_pred CCcEEeee
Confidence 99999987
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=9.3e-06 Score=46.54 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=48.5
Q ss_pred eEeeCCCeEEEecCCC-Cc-eeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC-C----CCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDL-LT-TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT-E----PKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~-~----~~~~~~~~L 158 (163)
..|..|..+.+.|... .. ....+++++...............+.|.+++.+|+|.|+|.. .. . ...|..+.|
T Consensus 14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL 93 (96)
T d1ucta2 14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALEL 93 (96)
T ss_dssp SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEE
T ss_pred CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEE
Confidence 4688899999999743 22 345566665422211111234567999999999999999987 22 2 344667777
Q ss_pred EE
Q psy3125 159 NV 160 (163)
Q Consensus 159 ~V 160 (163)
.|
T Consensus 94 ~V 95 (96)
T d1ucta2 94 VV 95 (96)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.94 E-value=3.1e-05 Score=46.06 Aligned_cols=33 Identities=9% Similarity=0.295 Sum_probs=27.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR 98 (124)
T d2b1hh1 66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR 98 (124)
T ss_dssp TTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred eeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence 466666655566788999999999999999965
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.91 E-value=4.2e-05 Score=45.39 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=27.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|++++.+|++.|+|..
T Consensus 67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr 99 (120)
T d2agjh1 67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCAR 99 (120)
T ss_dssp SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred cccceecccccceeeeeEEeeeeccceEEeeEe
Confidence 466666555556788999999999999999975
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.6e-05 Score=47.18 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCceEEEEecccCcCCCeeEEEEc
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
......|.|.+++.+|+|.|.|.+
T Consensus 73 ~~~~~~L~I~~l~~~DsavYyCa~ 96 (118)
T d1yjdc1 73 GNESVTFYLQNLYVNQTDIYFCKI 96 (118)
T ss_dssp CSSEEEEEEESCCGGGCEEEEEEE
T ss_pred CCCeEEEEECCCCcccCeEEEEEE
Confidence 345667999999999999999987
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.91 E-value=3.9e-06 Score=50.14 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCceEeeCCCeEEEecCCCC--ceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCee
Q psy3125 84 GRGARLSAGPLLNFAFPDLL--TTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
|..+.+..|..+.+.|.... ...+.|++..+ ++... .......|.|.+++.+|+|.
T Consensus 8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~--~~~~~~~L~I~~~~~~Dsav 85 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--GSGTDYTLTISSLQPEDVAT 85 (119)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EEBTEEEEEECSCCGGGCSE
T ss_pred CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc--CCCCEEEEEcccCccCCCeE
Confidence 34455667777777775322 23466764421 22221 12235679999999999999
Q ss_pred EEEEc
Q psy3125 142 YECQV 146 (163)
Q Consensus 142 Y~C~a 146 (163)
|+|.+
T Consensus 86 YyCa~ 90 (119)
T d1f3rb2 86 YFCYQ 90 (119)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 99987
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.91 E-value=2.1e-05 Score=46.64 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=26.1
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..........|+|++++.+|++.|+|..
T Consensus 67 R~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~ 98 (119)
T d1qnzh_ 67 KAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAI 98 (119)
T ss_dssp TEEEEEETTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred cceeecccccceeeeeecccCccceeEEEEEE
Confidence 66665545556778999999999999999976
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=8.2e-06 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|.|.+++.+|+|.|.|.+
T Consensus 73 ~~~~L~I~~l~~~Dsa~YyCa~ 94 (117)
T d1dqta_ 73 SRVNLTIQGLRAVDTGLYLCKV 94 (117)
T ss_dssp TEEEEEECSCCGGGCEEEEEEE
T ss_pred CEEEEEhhcCccccCEeEEEEE
Confidence 3567999999999999999987
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.88 E-value=1.8e-05 Score=46.47 Aligned_cols=22 Identities=14% Similarity=0.516 Sum_probs=19.8
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|+|.+++.+|+|.|.|.+
T Consensus 72 ~~~~L~I~~~~~~Dsa~YyCa~ 93 (110)
T d2aq2a1 72 EQFSLILESATPSQTSVYFCAS 93 (110)
T ss_dssp TEEEEEESSCCGGGCEEEEEEE
T ss_pred CEEEEEECCCCHhhCEEEEEee
Confidence 3567999999999999999987
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.87 E-value=5.5e-05 Score=44.38 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=37.9
Q ss_pred ceEeeCCCeEEEecCC--CC-ceeEEEEeCCC--------------------eEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 86 GARLSAGPLLNFAFPD--LL-TTNIYTYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~-~~~~~~~~~~~--------------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
.+.+.+|..+.+.|.. .. ...+.|++..+ ++.+. .......|.|.+++.+|+|.|
T Consensus 7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~Dsa~Y 84 (112)
T d1kgcd1 7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA--EDRKSSTLILHRATLRDAAVY 84 (112)
T ss_dssp EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC--TTSSEEEEEESSCCGGGCEEE
T ss_pred EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec--ccCCeeEEEEeecccccceeE
Confidence 4556677777777742 11 22366765321 22222 233456799999999999999
Q ss_pred EEEc
Q psy3125 143 ECQV 146 (163)
Q Consensus 143 ~C~a 146 (163)
.|.+
T Consensus 85 yCa~ 88 (112)
T d1kgcd1 85 YCIL 88 (112)
T ss_dssp EEEC
T ss_pred eeeE
Confidence 9987
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=5.8e-06 Score=47.42 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=48.9
Q ss_pred eEeeCCCeEEEecCCCCce-eEEEEeCCCeEEEe-cCC--CCceEEEEecccCcCCCeeEEEEc-CC-C--CCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLTT-NIYTYTGDARFSVI-HPQ--NSDEWNMKIDYAQKRDAGIYECQV-NT-E--PKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~-~--~~~~~~~~L 158 (163)
..|..|..+.+.|+..... ....++++...... ... ......+.|.+++..|+|.|+|.. .. . ...+..+.|
T Consensus 13 ~~V~~G~~VTL~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL 92 (96)
T d1ugna1 13 SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 92 (96)
T ss_dssp SEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred CccCCCCcEEEEEeCCCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEE
Confidence 4678899999999864433 33334443311111 101 123456999999999999999997 22 1 356778888
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
.|.|
T Consensus 93 ~VtG 96 (96)
T d1ugna1 93 VVTG 96 (96)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8876
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.86 E-value=3.3e-05 Score=45.43 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=26.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|++++.+|++.|+|..
T Consensus 66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr 98 (115)
T d1f3dh1 66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN 98 (115)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence 366666555566778999999999999999965
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.85 E-value=2.3e-05 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|.|++++.+|+|.|.|.+
T Consensus 66 ~~~~L~I~~l~~~Dsa~YyCA~ 87 (103)
T d8faba1 66 TTVTLTISGVQAEDEADYYCQA 87 (103)
T ss_dssp TEEEEEETTCCGGGCEEEEEEE
T ss_pred CccCceEcCcchhHCceEEeee
Confidence 4567999999999999999987
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.85 E-value=4e-05 Score=45.41 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=27.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr 98 (120)
T d1pg7x1 66 DKATLTVDRSSTTAYIELVRLTSNDSAVYYCAR 98 (120)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred hcceeeeccCcceEEccccccCCCcceEEEeee
Confidence 366666555566788999999999999999986
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.85 E-value=5.2e-05 Score=45.23 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 ~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR 98 (125)
T d1rihh1 66 DKAILTADRSSNTAFMYLNSLTSEDSAVYYCAR 98 (125)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeEEecccCcceEeeeeeccCcccceEEEEee
Confidence 367776655567788999999999999999975
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=9e-05 Score=39.98 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=37.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~ 77 (163)
|.|....++ .--.|+| ++.++.-.. .+ ...-.+.|.. .+|+|.|.|.+.+.|.....+.
T Consensus 17 LtCnLt~s~~~i~ghrW~K--~gkvl~ed~-----~~---------~~~tey~V~~--~D~SGeY~CVFl~~P~~~a~Ie 78 (80)
T d3b5ha2 17 LTCSLNDSATEVTGHRWLK--GGVVLKEDA-----LP---------GQKTEFKVDS--DDQWGEYSCVFLPEPMGTANIQ 78 (80)
T ss_dssp EEEEEESCSSCCCEEEEES--SSEEEECTT-----CC---------CSEEEEEECG--GGCCEEEEEEEESTTSCEEEEE
T ss_pred EEEECCCCCCceeeeEEee--CCEEccccC-----CC---------CCceEEEEec--CCCCceEEEEEcCCCcceeEEE
Confidence 579998877 4456998 555553111 11 1233456654 7799999999987777665543
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.84 E-value=3.1e-05 Score=45.93 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=28.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR 98 (124)
T d1yedb1 66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTR 98 (124)
T ss_dssp TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred eeEEEEccCCcceEEecccccCCCcceEEEecc
Confidence 477777666667889999999999999999976
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.83 E-value=3.1e-05 Score=46.05 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=28.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr 98 (125)
T d1op3h1 66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCAR 98 (125)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEeccCccceEeeeeeccCCccceeEeEee
Confidence 478887766667889999999999999999986
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=6.1e-05 Score=42.26 Aligned_cols=67 Identities=16% Similarity=0.339 Sum_probs=47.1
Q ss_pred CcEEEEEe-cCCeeEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCe--eEEEEEEEE
Q psy3125 10 RPVSWMRK-RDLHILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM--NMAIMLNVD 81 (163)
Q Consensus 10 ~~v~W~k~-~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~--~~~~~l~V~ 81 (163)
..|.|.|. +...+.. -+...+.+...|.++. +++|.|+++.++|+|+|.-.+ ++.+.. ...+.|.|+
T Consensus 28 ddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~-----nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~ 100 (101)
T d1hnfa1 28 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 100 (101)
T ss_dssp EEEEEEEGGGCCEEEEECGGGCEEESCTTEEECT-----TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred ceeEEEecCCCcceeeecccCCCCCCCceEEEcc-----CCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence 57889883 2233332 3444566677788875 667999999999999999999 555543 456667765
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.82 E-value=0.00023 Score=42.34 Aligned_cols=33 Identities=12% Similarity=0.390 Sum_probs=28.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR 98 (127)
T d2fx7h1 66 GRITITADRSTSTAYLELNSLRPEDTAVYYCAR 98 (127)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEeccCccceEeeeecccCcccceEEEEee
Confidence 477777666667889999999999999999976
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.82 E-value=2.6e-05 Score=45.96 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.3
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...|+|++++.+|+|.|.|.+
T Consensus 73 ~~~L~I~~~~~~Dsa~YyCa~ 93 (113)
T d1nfdb1 73 HSEMNMSALELEDSAMYFCAS 93 (113)
T ss_dssp CEEEECCSCCGGGCEEECEEE
T ss_pred eEEEEecccCcCCceeEEEEe
Confidence 467999999999999999987
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.9e-05 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=20.7
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|.|++++.+|+|.|.|.+
T Consensus 72 ~~~~~L~I~~l~~~Dsa~YyCa~ 94 (118)
T d1i8lc_ 72 GNQVNLTIQGLRAMDTGLYICKV 94 (118)
T ss_dssp SSEEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEEEeeccccCCCEEEEEeE
Confidence 34678999999999999999988
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.79 E-value=7.1e-05 Score=44.56 Aligned_cols=33 Identities=15% Similarity=0.443 Sum_probs=28.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr 98 (126)
T d1dfbh1 66 GRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK 98 (126)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEeccCCCcEEEeeeeeeccCcceEEEEEe
Confidence 477777766667889999999999999999975
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.77 E-value=2.5e-05 Score=45.67 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=37.6
Q ss_pred CceEeeCCCeEEEecCCC--CceeEEEEeCC--------------------CeEEEecCCCCceEEEEecccCcCCCeeE
Q psy3125 85 RGARLSAGPLLNFAFPDL--LTTNIYTYTGD--------------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIY 142 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 142 (163)
+.+.+.+|..+.+.|... ....+.|++.. .||..... .....|.|.+++++|+|.|
T Consensus 7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~--~~~~~L~I~~l~~~Dsa~Y 84 (108)
T d1nfde1 7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS--GTTATLTISGAQPEDEAAY 84 (108)
T ss_dssp SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEETTCCGGGCSEE
T ss_pred CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCC--CCEeeeeEcCccccCCceE
Confidence 345566677777777421 12245666432 13333221 2356799999999999999
Q ss_pred EEEc
Q psy3125 143 ECQV 146 (163)
Q Consensus 143 ~C~a 146 (163)
.|.+
T Consensus 85 yCA~ 88 (108)
T d1nfde1 85 YCLS 88 (108)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.77 E-value=1.8e-05 Score=46.62 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=19.1
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...|.|.+++++|+|.|.|.+
T Consensus 71 ~~~L~I~~~~~~DsavYyCA~ 91 (112)
T d2bnub1 71 DFPLRLLSAAPSQTSVYFCAS 91 (112)
T ss_dssp BCCEEESSCCGGGCEEEEEEE
T ss_pred EEEEEECCCCHHHCEEEEEee
Confidence 456999999999999999987
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.76 E-value=8.4e-05 Score=42.38 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=46.9
Q ss_pred eEeeCCCeEEEecCCCCce-eEEEEeCCCe-E--EEe--cCCCCceEEEEecccCcCCCeeEEEEc--CCC----CCccE
Q psy3125 87 ARLSAGPLLNFAFPDLLTT-NIYTYTGDAR-F--SVI--HPQNSDEWNMKIDYAQKRDAGIYECQV--NTE----PKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~----~~~~~ 154 (163)
..|..|..+.+.|...... ....++++.. . ... .........+.|.+++..|+|.|+|.. ... ...|.
T Consensus 11 ~~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSd 90 (96)
T d1nkra1 11 PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSD 90 (96)
T ss_dssp SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCC
T ss_pred CccCCCCcEEEEECCCCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcccCCCC
Confidence 5688899999999865443 4444444431 1 111 112234567999999999999999987 221 23466
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 91 pLeL~V 96 (96)
T d1nkra1 91 PLDIVI 96 (96)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 666655
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.76 E-value=4.2e-05 Score=44.93 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=40.5
Q ss_pred CceEEecCC-CcEEEEEecCCe---eEEe---cceE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLH---ILTT---NIYT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~---~~~~---~~~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|..++.. ..|.|+|+..+. .+.. .+.. .....||..... ++..|.|..++.+|++.|.|...
T Consensus 21 L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~l~l~~~~~~dsa~Y~Ca~~ 94 (112)
T d1fo0b_ 21 LRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTELRLQVANMSQGRTLYCTCS 94 (112)
T ss_dssp EEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETTEEEEEEESCCSCEEEEEEEE
T ss_pred EEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc---cccEEEEecCCccCCccEEEEEe
Confidence 679988777 889999975322 1211 1111 112346665532 23468888888999999999973
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.76 E-value=1.9e-05 Score=46.50 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=19.6
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|.|.+++++|+|.|.|.+
T Consensus 69 ~~~~L~i~~~~~~Dsa~YyCA~ 90 (112)
T d2cdeb1 69 EHFPLTLESARPSHTSQYLCAS 90 (112)
T ss_dssp SBCCEEBSSCCTTTCSEEEEEE
T ss_pred CceEeeeccccccccccEEEEE
Confidence 3456999999999999999987
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.75 E-value=5.6e-05 Score=44.82 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=25.5
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..........|+|++++.+|++.|+|..
T Consensus 67 R~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr 98 (121)
T d1j05b_ 67 KATITADTSSNTAYLQLTSLTSEDTAVYYCAP 98 (121)
T ss_dssp TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEeecCCceeeecccccCcCcceEEEeEe
Confidence 56665544455678999999999999999975
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.75 E-value=8.1e-05 Score=43.93 Aligned_cols=33 Identities=18% Similarity=0.464 Sum_probs=28.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr 96 (119)
T d1kxvc_ 64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKP 96 (119)
T ss_dssp TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEecccCCcceecccccCCcCCcceEeeee
Confidence 477777766667888999999999999999976
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.74 E-value=8.7e-05 Score=43.75 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=28.5
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr 98 (119)
T d1rz7h1 66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAA 98 (119)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEecccCceEEEeeeeccCcccceEEEEee
Confidence 477777766677889999999999999999977
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.73 E-value=5.7e-05 Score=44.40 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=27.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr 98 (118)
T d1nlbh1 66 GRFAFSLETSASTAYLQINSLKNEDTATYFCAR 98 (118)
T ss_dssp SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeEEEecCCceeEEeeeeecccCcceEEEEee
Confidence 467776655566788999999999999999965
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=0.00022 Score=39.08 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=40.5
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEe-ccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|-|+.-. |.|.|-|.++........ +..++.-= ....-.-+.|....+-.+|.|.|+|.++-
T Consensus 23 leCPVkYC~~RPnVtWCKlngt~cv~Le~----~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf 89 (104)
T d1xaua_ 23 IECPVKYCVHRPNVTWCKHNGTIWVPLEV----GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 89 (104)
T ss_dssp EEEEEECSSSCCCEEEEEECSSSEEECCC----BTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred ecCcchhhcCCCCcEEEEeCCcEEEEeec----CCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence 468888666 999999976554332111 01122221 11122356788889999999999999953
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.71 E-value=0.00011 Score=43.20 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=27.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~ 98 (117)
T d1iqdb1 66 GSVTMTADTSTNIAYMELSSLRSDDTAVYYCAV 98 (117)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeeeecccccceEEEeecccCcCcceEEEEeE
Confidence 366666655566788999999999999999987
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.69 E-value=0.00014 Score=42.90 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=28.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr 98 (121)
T d2p49b1 66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAA 98 (121)
T ss_dssp TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EeEEEeecCCceEEEEEeeeccccceeEEeeec
Confidence 478888766677889999999999999999986
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.69 E-value=0.00011 Score=43.79 Aligned_cols=33 Identities=12% Similarity=0.346 Sum_probs=28.5
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr 98 (128)
T d2nxyd1 66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAG 98 (128)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeecCCCceEEeeeeeccccCceEEEEeE
Confidence 577887766667889999999999999999986
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.68 E-value=0.00011 Score=43.27 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+......+...|+|.+++.+|++.|+|..
T Consensus 66 gRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr 98 (120)
T d1ad9b1 66 GRATLTVDTSTNTAYMELSSLRSEDTAFYFCAR 98 (120)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEEecCcceEEeccccccCCCcceEEEEEE
Confidence 477777656667889999999999999999976
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.68 E-value=9.5e-05 Score=43.67 Aligned_cols=33 Identities=15% Similarity=0.458 Sum_probs=27.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|++++.+|++.|+|..
T Consensus 65 gRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr 97 (120)
T d1dn0b1 65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR 97 (120)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeEEeccCchheecccccccccccccEEEEEe
Confidence 478777656667888999999999999999964
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.67 E-value=0.00015 Score=42.51 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=28.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr 98 (117)
T d1jnhb1 66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR 98 (117)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEeccCccceeeecccccCCCcceEEEEee
Confidence 477777666667889999999999999999976
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.66 E-value=9e-05 Score=42.85 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=28.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|++++.+|++.|+|..
T Consensus 58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~ 90 (107)
T d1sjva_ 58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYT 90 (107)
T ss_dssp TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred cceEEecCCceeEEEEeecCCCcccceeeeEec
Confidence 478888766667888999999999999999976
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.66 E-value=0.00011 Score=43.13 Aligned_cols=33 Identities=12% Similarity=0.476 Sum_probs=28.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|++++.+|++.|+|..
T Consensus 65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr 97 (116)
T d7fabh1 65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCAR 97 (116)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ecceeecccchhhhhccccccccccceEEEeee
Confidence 477777656667888999999999999999986
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.65 E-value=6.1e-05 Score=44.59 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=27.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr 99 (122)
T d1vgeh1 67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCAR 99 (122)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EeeEEeccCCcceeeecccccCCCcceEEEEee
Confidence 477777656667888999999999999999976
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.65 E-value=0.00012 Score=42.87 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=28.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr 97 (117)
T d1c5db1 65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTR 97 (117)
T ss_dssp SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEecccccceeeccccccccCcceEEEEec
Confidence 478877766667889999999999999999976
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.63 E-value=9.6e-05 Score=43.45 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.5
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr 98 (118)
T d2jelh1 66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCAR 98 (118)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccEEEecccCcceEeecccccccCcceeeeEEE
Confidence 366666555556788999999999999999954
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.63 E-value=0.00018 Score=41.20 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=46.4
Q ss_pred eEeeCCCeEEEecCCCCc-eeEEEEeCCCeEEE---ecCCCCceEEEEecccCcCCCeeEEEEc--CCC----CCccEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT-TNIYTYTGDARFSV---IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTE----PKMNMAI 156 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~----~~~~~~~ 156 (163)
..|..|..+.+.|+.... ....+++++..... ..........+.|..+...|+|.|+|.. ... ...|..+
T Consensus 15 ~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpL 94 (99)
T d1nkra2 15 PTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPL 94 (99)
T ss_dssp SEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCE
T ss_pred CcccCCCeEEEEECCCCCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccCCCCCE
Confidence 467889999999975433 34455555432111 1112233556788889999999999976 222 3446677
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 95 eL~V 98 (99)
T d1nkra2 95 LVSV 98 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7766
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.62 E-value=0.00023 Score=42.29 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|++.|+|..
T Consensus 65 gRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr 97 (126)
T d1lmka1 65 GKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR 97 (126)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence 577777666667889999999999999999974
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=9.1e-05 Score=42.10 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=26.8
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEEEEEE
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIMLNVD 81 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~l~V~ 81 (163)
....+.|.+|+.+|+|.|+|...+.. ..+..+.|.|.
T Consensus 55 ~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 94 (95)
T ss_dssp CEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred cEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence 35679999999999999999974321 23455666664
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.61 E-value=0.00014 Score=42.17 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=27.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|.-
T Consensus 68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr 100 (109)
T d2ck0h1 68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVR 100 (109)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cCceeccccccceeEecccCCCHhHCEEEEEEE
Confidence 477777656667788999999999999999975
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.60 E-value=0.00015 Score=42.79 Aligned_cols=33 Identities=12% Similarity=0.344 Sum_probs=27.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr 99 (120)
T d1ai1h1 67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR 99 (120)
T ss_dssp TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred ccceeccccccceeecceeeeeccceeEEEEEe
Confidence 477777655666788999999999999999975
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=5.8e-05 Score=43.26 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=24.9
Q ss_pred eEEEEEcccCcCCCeeEEEEeeCCCC---eeEEEEEEE
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNTEPK---MNMAIMLNV 80 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~~~~---~~~~~~l~V 80 (163)
...+.|.+|+.+|+|.|+|...+... .+..+.|.|
T Consensus 61 ~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 61 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV 98 (99)
T ss_dssp CCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred eEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence 45699999999999999999843211 234555554
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.57 E-value=0.00013 Score=41.94 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 53 ~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr 85 (103)
T d1oari_ 53 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCAR 85 (103)
T ss_dssp TTEEEEC----CEEEEEECCC---CCSEEEEEE
T ss_pred eceEEeccccccEEEeeeeeccccccEEEEeEE
Confidence 578887766667888999999999999999976
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.57 E-value=0.00018 Score=42.83 Aligned_cols=33 Identities=21% Similarity=0.534 Sum_probs=28.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr 98 (127)
T d2fb4h1 66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCAR 98 (127)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEeccCCccEEEeeeeeeeecceeEEEEEE
Confidence 477777766667889999999999999999976
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.56 E-value=0.00017 Score=43.42 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=27.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|++++.+|++.|+|..
T Consensus 67 ~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr 99 (132)
T d1tjgh1 67 TRLTITKDTSKNQVVLVMTRVSPVDTATYFCAH 99 (132)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ecceecccccccEEEcccccCCcccceEEEEEE
Confidence 477776545556788999999999999999976
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.56 E-value=0.00011 Score=43.04 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=27.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+......+...|+|++++.+|++.|+|..
T Consensus 66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr 98 (117)
T d1jpth1 66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCAR 98 (117)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEEeccccceEEecccccCCCCceEEEEee
Confidence 477777655567788999999999999999966
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.56 E-value=0.00011 Score=43.30 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=27.1
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr 98 (119)
T d1eapb1 66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR 98 (119)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence 367776655566788999999999999999975
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00014 Score=41.58 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=38.0
Q ss_pred eEeeCCCeEEEecCCCCceeEE-EEeCCCeEE--E---e-cCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 87 ARLSAGPLLNFAFPDLLTTNIY-TYTGDARFS--V---I-HPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~---~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|..|..+.+.|+........ .++.+.... . . .........+.|.+++.+|+|.|+|..
T Consensus 13 ~~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y 79 (98)
T d1ugna2 13 PVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 79 (98)
T ss_dssp SEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred CccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence 4688899999999876544333 334333211 1 1 111234567999999999999999987
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.56 E-value=0.00017 Score=42.35 Aligned_cols=33 Identities=12% Similarity=0.404 Sum_probs=28.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr 98 (118)
T d2fbjh1 66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCAR 98 (118)
T ss_dssp TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEeecCccceeeccccccCCCcceEEEeeE
Confidence 478887766677889999999999999999986
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.55 E-value=0.00025 Score=41.59 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=27.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 65 gRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr 97 (117)
T d1um5h1 65 GKATLTSDKSSNTAYLELSSLTSEDSAVYYCAR 97 (117)
T ss_dssp TCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEEeccCceeEeecccccCCCcceEEEEee
Confidence 477777656667788999999999999999975
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.54 E-value=0.00023 Score=41.61 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=27.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|.+++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN 98 (116)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeeEecccccceeEecccccCCCCceEEEEcc
Confidence 377777666677889999999999999999965
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.54 E-value=0.00023 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.5
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..+.......|+|++++.+|++.|+|..
T Consensus 67 R~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr 98 (118)
T d1ct8b1 67 KARLTVDTSSSTAYMQFSSLTTEDSAIYYCAR 98 (118)
T ss_dssp TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEecCccceEEecccccCCCcceEEEEee
Confidence 66666555566788999999999999999976
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.53 E-value=0.00022 Score=42.75 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=28.2
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 65 gR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr 97 (133)
T d1rzfh1 65 GRVTISADESTRTVYLHLRGLRSDDTAVYYCAS 97 (133)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEeccCcceeEEeeccCCCCCCEEEEeee
Confidence 477777766667889999999999999999976
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.00037 Score=38.20 Aligned_cols=74 Identities=14% Similarity=0.238 Sum_probs=45.1
Q ss_pred EeeCCCeEEEecCCC---CceeEEEEeCCC-----------eEEE-ecCCCCceEEEEecccCcCCCeeEEEEc--CCCC
Q psy3125 88 RLSAGPLLNFAFPDL---LTTNIYTYTGDA-----------RFSV-IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEP 150 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~---~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~ 150 (163)
.+..|..+.+.|... ..+.+.|.+-++ +... ....+...+.|.+.++..+|.|.|+|.| +..-
T Consensus 14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~v 93 (104)
T d1xaua_ 14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQV 93 (104)
T ss_dssp EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhh
Confidence 355667777777431 234555654332 1111 1223345667999999999999999999 3333
Q ss_pred CccEEEEEEEe
Q psy3125 151 KMNMAIMLNVD 161 (163)
Q Consensus 151 ~~~~~~~L~V~ 161 (163)
--+++++|.|.
T Consensus 94 ieSHSvti~Vt 104 (104)
T d1xaua_ 94 INSHSVTIHVR 104 (104)
T ss_dssp EECCCEEEEEC
T ss_pred eecceEEEEeC
Confidence 44667777763
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.52 E-value=0.00016 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=27.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|++++.+|++.|+|..
T Consensus 65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr 97 (116)
T d1a2yb_ 65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCAR 97 (116)
T ss_dssp GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccceEeccCCCceEEcceeeeeeccceEEEEEE
Confidence 467777655566788999999999999999976
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.51 E-value=0.00012 Score=43.43 Aligned_cols=33 Identities=21% Similarity=0.536 Sum_probs=28.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|.+++.+|++.|+|..
T Consensus 65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr 97 (124)
T d1zvya1 65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGA 97 (124)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred cccEEecccccceeeceeccccCCcceEEEEee
Confidence 578877666667888999999999999999986
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.51 E-value=0.0002 Score=42.82 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=28.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 65 gR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr 97 (130)
T d1rhhb1 65 GRVTFTADQATSTAYMELTNLRSDDTAVYYCAR 97 (130)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeEEeccCCccEEEEEeeccCCCCcEEEEEEe
Confidence 477777666667888999999999999999975
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.50 E-value=0.0002 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=27.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|.-
T Consensus 66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR 98 (127)
T d1n0xh1 66 DRVTFTADTSANTAYMELRSLRSADTAVYYCAR 98 (127)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence 367777655566788999999999999999973
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.50 E-value=0.00021 Score=41.94 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=26.6
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..........|+|++++.+|++.|+|..
T Consensus 67 R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 67 KTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR 98 (117)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence 66666655566788999999999999999975
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.49 E-value=0.00024 Score=41.43 Aligned_cols=33 Identities=15% Similarity=0.481 Sum_probs=28.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~ 98 (114)
T d1indh1 66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS 98 (114)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred eeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence 477877766667888999999999999999976
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.48 E-value=3.2e-05 Score=46.30 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=27.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr 103 (127)
T d1i3ua_ 71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAA 103 (127)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceeEeccCCceEEEEeeecccccceeEEEEEE
Confidence 477777655566788999999999999999986
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.48 E-value=0.00037 Score=41.70 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=28.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr 98 (135)
T d1ieha_ 66 GRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAK 98 (135)
T ss_dssp TTEEEEECTTTCCEEEEEESCCSSSCEEEEEEE
T ss_pred EeEEEeccCCCceeEecEeeeCcccceeeEEEE
Confidence 478887766677889999999999999999976
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.47 E-value=0.00016 Score=42.74 Aligned_cols=33 Identities=15% Similarity=0.435 Sum_probs=27.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|++++.+|++.|+|..
T Consensus 66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr 98 (123)
T d1mqkh_ 66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVR 98 (123)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEecCcccccccceeeeccCcccceeEEe
Confidence 367776655556778999999999999999976
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.47 E-value=0.00014 Score=43.03 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=27.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|++.|+|..
T Consensus 66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr 98 (122)
T d1bz7b1 66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTR 98 (122)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEeccCCccEeEeeeeeecccCceEEEeec
Confidence 577777655556788999999999999999976
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.46 E-value=0.00016 Score=42.93 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=26.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr 99 (123)
T d1r0ah1 67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQ 99 (123)
T ss_dssp GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEccccccceeEEcceeecccccceEEeecc
Confidence 467766544456788999999999999999976
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0018 Score=34.74 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCCeEEEecC----CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEE
Q psy3125 91 AGPLLNFAFP----DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157 (163)
Q Consensus 91 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~ 157 (163)
.+..+.+.|. ........|.+++..+.. .+..+..-.+.|.. .+|+|+|.|.+...+.....+.
T Consensus 11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~e-d~~~~~~tey~V~~--~D~SGeY~CVFl~~P~~~a~Ie 78 (80)
T d3b5ha2 11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKE-DALPGQKTEFKVDS--DDQWGEYSCVFLPEPMGTANIQ 78 (80)
T ss_dssp ETTEEEEEEEEESCSSCCCEEEEESSSEEEEC-TTCCCSEEEEEECG--GGCCEEEEEEEESTTSCEEEEE
T ss_pred CCCCEEEEEECCCCCCceeeeEEeeCCEEccc-cCCCCCceEEEEec--CCCCceEEEEEcCCCcceeEEE
Confidence 3455666663 233457778887776653 33445555677764 8899999999955455444443
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.44 E-value=0.00049 Score=41.13 Aligned_cols=33 Identities=15% Similarity=0.537 Sum_probs=27.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 68 gR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR 100 (131)
T d3c2ah1 68 GRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTT 100 (131)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEecccccceeecceeccccCCceEEEEec
Confidence 477777655567788999999999999999976
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.43 E-value=0.00029 Score=41.90 Aligned_cols=33 Identities=12% Similarity=0.404 Sum_probs=26.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr 97 (126)
T d1rjca1 65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAA 97 (126)
T ss_dssp TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEEecCCceEEEEEEeccCcccCceeEEEe
Confidence 477777655566788999999999999999986
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.41 E-value=0.00038 Score=41.53 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=27.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr 98 (130)
T d1rzga1 66 GRVSITADESTSTAYMELSSLRSEDTAVFYCAS 98 (130)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred cceEEecccccceEEeeeeecCCCccEEEEEEE
Confidence 367777655666888999999999999999976
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.41 E-value=0.00029 Score=41.63 Aligned_cols=33 Identities=15% Similarity=0.479 Sum_probs=28.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr 98 (121)
T d1ol0a_ 66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR 98 (121)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeeEEeccccceeEEeeeeecccccceEEEEEE
Confidence 477777656667888999999999999999976
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.40 E-value=0.0003 Score=41.38 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=28.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.||.+..........|+|.+++.+|++.|+|..
T Consensus 68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~ 100 (120)
T d1dlfh_ 68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTG 100 (120)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ecceeecccccceeccceeeccCCCceEEEeeE
Confidence 478777666667889999999999999999976
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.39 E-value=0.00031 Score=41.51 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=28.5
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+......+...|+|.+++.+|++.|+|..
T Consensus 68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar 100 (122)
T d1q9rb1 68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCAR 100 (122)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ecceeeeecccceeccceeeeccCcceEEEEEe
Confidence 477777666667888999999999999999987
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.38 E-value=0.00032 Score=41.13 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=27.7
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|++++.+|++.|+|..
T Consensus 65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr 97 (118)
T d1lo4h1 65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCAR 97 (118)
T ss_dssp TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eeEEEeccccceeeeeccccccCCcceEEEecc
Confidence 467777656667788999999999999999976
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.36 E-value=0.00029 Score=41.26 Aligned_cols=33 Identities=15% Similarity=0.477 Sum_probs=28.5
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr 98 (117)
T d1b2wh1 66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR 98 (117)
T ss_dssp TTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred eeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence 478888766677889999999999999999965
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.31 E-value=0.00021 Score=42.11 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=27.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|++.|+|..
T Consensus 68 gR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr 100 (121)
T d1nfdf1 68 GRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTR 100 (121)
T ss_dssp TTBCCEECTTTSEEEEEEESCCGGGCEECEEEE
T ss_pred eeeEEccccccceeeceecccCCCcceEEEEec
Confidence 356666655667888999999999999999976
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00067 Score=38.36 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=44.6
Q ss_pred ceEeeCCCeEEEecCCCCc-eeEEEEe-CCC-------eEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEE
Q psy3125 86 GARLSAGPLLNFAFPDLLT-TNIYTYT-GDA-------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAI 156 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~-------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~ 156 (163)
.+.+.+|..+.+.|..... ....... .++ .+....+.+ +.|++++..|+|.|.|.|...|....+.
T Consensus 14 ~V~v~eg~~~vIPC~vT~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~G-----f~I~~~~~~~~g~y~C~a~~~g~~~~S~ 88 (95)
T d1fltx_ 14 IIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKG-----FIISNATYKEIGLLTCEATVNGHLYKTN 88 (95)
T ss_dssp EEEECTTSCEEECCCBSCTTSCCEEEETTTEEECCCSSSEEEETTTE-----EEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCEEEEccCCCCCceeEEEeccCCccCCCCCEEEECCCCC-----EEEeCCCcccCeEEEEEEEECCEEEEEE
Confidence 3457778888888864322 2222222 222 222222222 9999999999999999995556666666
Q ss_pred EEEEe
Q psy3125 157 MLNVD 161 (163)
Q Consensus 157 ~L~V~ 161 (163)
+|..+
T Consensus 89 yl~~r 93 (95)
T d1fltx_ 89 YLTHR 93 (95)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.28 E-value=2.5e-05 Score=45.96 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=25.3
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+..........|+|++++.+|++.|+|..
T Consensus 66 R~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr 97 (116)
T d1fn4b1 66 RLSISRDTSKNQVFLKMNSLQTDDTGTYYCTR 97 (116)
T ss_dssp TBCCEEEGGGTEEECCEESCCCCCCEEEEEEE
T ss_pred eEEEccccccchhhcceeccCCCCCEEEEEEe
Confidence 55555544456778999999999999999976
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.21 E-value=0.00083 Score=39.42 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=28.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..+.......|+|.+++.+|+..|+|..
T Consensus 66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr 98 (119)
T d1ncwh1 66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAG 98 (119)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccceEecccccceeeccccccccCCceEEEEeE
Confidence 477777766677889999999999999999976
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00091 Score=36.73 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=47.2
Q ss_pred CCCeEEEecCCCCceeEEEEeCCCeEEEecCC---CCceEEEEecccCc-CCCeeEEEEc-C-CCCCccEEEEEEEe
Q psy3125 91 AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQK-RDAGIYECQV-N-TEPKMNMAIMLNVD 161 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~-~D~G~Y~C~a-~-~~~~~~~~~~L~V~ 161 (163)
.|..+.+.|+......+.|.+++......... ....-+|.+.+-.+ +++|.|.|.+ . .....+.-++|+.+
T Consensus 9 SGTtV~LTCP~~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR 85 (91)
T d1xiwa_ 9 SGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 85 (91)
T ss_dssp ETTEEEEECSSCTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred eCCEEEEECCCCCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence 37778899987666778888876543321110 01123588898877 7999999998 2 33455666777765
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.0011 Score=37.74 Aligned_cols=57 Identities=12% Similarity=0.381 Sum_probs=32.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|++ ++..+. ........++.|++.. .|.+ ..++.+.|+|++...
T Consensus 23 L~C~v~gf~P~~i~V~W~~--~g~~~~~~~~~~~~~~~dgtf~~~s-------~l~v---~~~~~~~ytC~V~H~ 85 (99)
T d1lk2b_ 23 LNCYVTQFHPPHIEIQMLK--NGKKIPKVEMSDMSFSKDWSFYILA-------HTEF---TPTETDTYACRVKHD 85 (99)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECTTCEEEEEEECTTCCEEEEE-------EEEE---CCCSSCCEEEEEECT
T ss_pred EEEEEEEEECCCcEEEEee--CCeecCCcEECceeECCCCCEEEEE-------EeEe---cCcCCCEEEEEEEeC
Confidence 57999986 4 7899988 322221 1111222334443332 2443 456677899999653
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0012 Score=37.05 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.6
Q ss_pred CeEEEEEcccCcCCCeeEEEEe
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
+...+.|.+|+.+|+|.|+|..
T Consensus 52 ~~a~F~i~~v~~~~~G~Y~C~~ 73 (93)
T d1olla2 52 VQAEFPLGPVTTAHRGTYRCFG 73 (93)
T ss_dssp SEEEEEEEECCGGGCEEEEEEC
T ss_pred ceeEEEecccChhcCceEEEEe
Confidence 4667999999999999999975
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0006 Score=38.97 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=33.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+. ........++.|++.. .| .+..+|.+.|+|++...
T Consensus 24 L~C~~~gFyP~~i~v~W~~--ng~~v~~~~~~~~~~~~dgty~~~s-------~l---~v~~~~~~~ytC~V~H~ 86 (100)
T d1k5nb_ 24 LNCYVSGFHPSDIEVDLLK--NGERIEKVEHSDLSFSKDWSFYLLY-------YT---EFTPTEKDEYACRVNHV 86 (100)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECTTCEECCCEECTTSCEEEEE-------EE---EECCCSSCCEEEEEECT
T ss_pred EEEEECccCCCCcEEEEEE--CCEecCCccccceecCCCCcEEEEE-------Ee---EECCCCCCEEEEEEEeC
Confidence 57999986 4 7999997 333221 1122223344444332 23 33456777999999764
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00053 Score=38.78 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=23.9
Q ss_pred EEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 48 NMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 48 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
-+.|++++..|.|.|.|++...+......+|.
T Consensus 60 Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~yl~ 91 (95)
T d1fltx_ 60 GFIISNATYKEIGLLTCEATVNGHLYKTNYLT 91 (95)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEeCCCcccCeEEEEEEEECCEEEEEEEEE
Confidence 38999999999999999996555443344443
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0013 Score=37.11 Aligned_cols=57 Identities=16% Similarity=0.424 Sum_probs=31.4
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+..+.. ....++.|.+. ..| .+...|...|+|++...
T Consensus 20 L~C~~~gFyP~~i~v~W~~--dg~~~~~~~~~~~~~~~~~~~t~~~~-------s~l---~v~~~~~~~ytC~V~H~ 84 (94)
T d1de4a1 20 LRCRALNYYPQNITMKWLK--DKQPMDAKEFEPKDVLPNGDGTYQGW-------ITL---AVPPGEEQRYTCQVEHP 84 (94)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCGGGSCCCEEEECTTSCEEEE-------EEE---EECTTCGGGEEEEEECT
T ss_pred EEEEEeeEECCCCEEEEEE--CCEECccCcccccceEeCCCceEEEE-------EEE---EECCCCCCEEEEEEEeC
Confidence 57999984 5 8999998 3332221111 11122223222 123 34556777899999764
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0039 Score=34.98 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=32.6
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.| +| +.|.|++ ++..+........ ..++.|.+.. .|.|. ..+...|+|++...
T Consensus 21 L~C~~~g~~P~~~V~W~~-n~~~~~~~~~~~~~~~~~g~y~v~S-------~L~v~---~~~~~~~tC~V~h~ 82 (95)
T d1dr9a2 21 IICSTSGGFPEPHLSWLE-NGEELNAINTTVSQDPETELYAVSS-------KLDFN---MTTNHSFMCLIKYG 82 (95)
T ss_dssp EEEEEEEESSCEEEEEEE-SSCEECCSEEEEEECTTTCCEEEEE-------EEEEE---TTSCEEEEEEEEET
T ss_pred EEEEECcccCCCEEEEec-CCcEecccceeeEecCCCccEEEEE-------EEEcc---CCccceEEEEEEec
Confidence 5799997 58 9999997 3333221111111 1234444442 35553 34567999999653
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.95 E-value=0.0015 Score=37.98 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=17.3
Q ss_pred EEEecccCcCCCeeEEEEc
Q psy3125 128 NMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 128 ~L~i~~v~~~D~G~Y~C~a 146 (163)
.|.|..++.+|++.|.|.+
T Consensus 75 ~l~l~~~~~~dsa~Y~Ca~ 93 (112)
T d1fo0b_ 75 ELRLQVANMSQGRTLYCTC 93 (112)
T ss_dssp EEEEEEESCCSCEEEEEEE
T ss_pred EEEEecCCccCCccEEEEE
Confidence 5899999999999999986
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=96.92 E-value=0.0017 Score=36.95 Aligned_cols=58 Identities=19% Similarity=0.442 Sum_probs=33.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeE---EecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHIL---TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+|. +..+. .........++.|++.. .|.+ ..++.+.|+|++...
T Consensus 22 L~C~v~gFyP~~i~v~W~~n-g~~v~~~~~~t~~~~~~dgtf~~~s-------~l~v---~~~~~~~ytC~V~H~ 85 (100)
T d1muja1 22 LICFVDNIFPPVINITWLRN-SKSVADGVYETSFFVNRDYSFHKLS-------YLTF---IPSDDDIYDCKVEHW 85 (100)
T ss_dssp EEEEEEEECSSCCEEEEEES-SSBCCSSEEECCCEECTTSCEEEEE-------EEEE---CCCTTCCEEEEEECT
T ss_pred EEEEEEeEECCCCEEEEEeC-CeeccCCceeeeeEECCCCCEEEEE-------EeEE---cCCCCCEEEEEEEEC
Confidence 57999986 3 89999973 22221 11112223444555442 2444 345677899999764
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0015 Score=36.74 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=31.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|++ ++..+.. .......++.|.+. ....+...|...|+|++...
T Consensus 20 L~C~~~gFyP~~i~v~W~~--ng~~~~~~~~~~~~~~~~~t~~~~----------s~l~~~~~~~~~ytC~V~H~ 82 (94)
T d1t7va1 20 LKCLAYDFYPGKIDVHWTR--AGEVQEPELRGDVLHNGNGTYQSW----------VVVAVPPQDTAPYSCHVQHS 82 (94)
T ss_dssp EEEEEEEEBSSCEEEEEEE--TTEECCCSEEEEEEETTTTEEEEE----------EEEEECTTCCSCEEEEEEET
T ss_pred EEEEEEeEECCCCEEEEEE--CCEECCCcEEeeeecCCCCeEEEE----------EEeEeCCCCCCEEEEEEEEC
Confidence 57999985 5 7899998 3333221 11111223333332 22334556667899999653
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0014 Score=37.00 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.6
Q ss_pred eEEEEEcccCcCCCeeEEEEee
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
...+.|.+++.+|+|.|.|...
T Consensus 55 ~a~F~l~~v~~~~~G~Y~C~y~ 76 (96)
T d1ucta2 55 PANFSLGPVDLNVSGIYRCYGW 76 (96)
T ss_dssp SEEEECCSCCGGGCEEEEEEEE
T ss_pred ccEEEEeccccccCcEEEEEEE
Confidence 4679999999999999999873
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.82 E-value=0.00077 Score=37.77 Aligned_cols=57 Identities=19% Similarity=0.406 Sum_probs=32.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|++ ++..+..+.. ....++.|++.. .|.| ..+|...|+|++...
T Consensus 20 L~C~~~gF~P~~i~v~W~~--ng~~~~~~~~~~~~~~dgty~~~S-------~l~v---~~~~~~~ytC~V~H~ 81 (91)
T d3frua1 20 LTCAAFSFYPPELKFRFLR--NGLASGSGNCSTGPNGDGSFHAWS-------LLEV---KRGDEHHYQCQVEHE 81 (91)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCCCEEEEEECSSSCEEEEE-------EEEE---ETTCGGGEEEEEECT
T ss_pred EEEEEEeEECCCCEEEEEE--CCEeCCccCccceecCCCCEeEEE-------EEEE---CCCCCCEEEEEEEeC
Confidence 57999985 5 8999998 3333222111 112344444332 2444 345667899999654
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.0037 Score=35.57 Aligned_cols=61 Identities=13% Similarity=0.329 Sum_probs=33.5
Q ss_pred CceEEecC-C-C--cEEEEEecCCeeEE-ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G-R--PVSWMRKRDLHILT-TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~-~--~v~W~k~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | . .+.|.+ ++...-. ........++.|.+.. .|.|..-.-...-.|+|++...
T Consensus 24 L~Clv~gF~P~~~i~v~W~~-~~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~~~~ytC~V~H~ 89 (102)
T d2fbjh2 24 IGCLIHDYFPSGTMNVTWGK-SGKDITTVNFPPALASGGRYTMSN-------QLTLPAVECPEGESVKCSVQHD 89 (102)
T ss_dssp EEEEEEEEBSCCCEEEEESC-CCSSCEEEECCCEECSSSCEEEEE-------EEEECGGGSCTTCEEEEEEEET
T ss_pred EEEEEEcccCCCcEEEEEcc-CCCcCceeEeeeEecCCCCEEEEE-------EEEEeHHHccCCCEEEEEEEEC
Confidence 56999994 5 2 344544 3332221 1112233455665543 3677666555556899999653
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0036 Score=35.98 Aligned_cols=57 Identities=11% Similarity=0.316 Sum_probs=29.6
Q ss_pred CceEEecC-C-C--cEEEEEecCCeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEee
Q psy3125 1 MACTVMGL-G-R--PVSWMRKRDLHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVN 67 (163)
Q Consensus 1 l~C~~~~~-~-~--~v~W~k~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~ 67 (163)
|.|.+.+. | + .|.|++ +...+...... ....+.+.. ...|.+. ++.+|.| .|+|+|.
T Consensus 21 l~C~v~~~~P~~~~~i~W~~--g~~~~~~~~~~~~~~~~~~~~~-------~s~l~~~-~~~~D~g~~ltC~a~ 84 (109)
T d1vcaa1 21 VKCSVADVYPFDRLEIDLLK--GDHLMKSQEFLEDADRKSLETK-------SLEVTFT-PVIEDIGKVLVCRAK 84 (109)
T ss_dssp EEEEEEEEBSGGGEEEEEEE--TTEEEEEEECCSCCSSCCCEEE-------EEEEEEC-CCGGGTTCEEEEEEE
T ss_pred EEeEeCCcCCCCceEEEEec--cCceeeccccccccccCCccee-------eEEEEcc-CChHHCCcEEEEEEE
Confidence 57999864 5 3 588997 44444311110 011112221 1235554 5555655 7999994
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=96.64 E-value=0.0036 Score=35.61 Aligned_cols=57 Identities=19% Similarity=0.443 Sum_probs=33.4
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|++ ++..+..+ ......++.|++.. .|.+. .++...|+|++...
T Consensus 24 L~C~v~gF~P~~i~v~W~~--ng~~~~~~~~~~~~~~~~dgty~~~S-------~L~v~---~~~~~~ytC~V~H~ 87 (101)
T d1fnga1 24 LICFIDKFSPPVVNVTWLR--NGRPVTEGVSETVFLPRDDHLFRKFH-------YLTFL---PSTDDFYDCEVDHW 87 (101)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEEECSSEEECCCEECSSSCEEEEE-------EEEEC---CCTTCCEEEEEECT
T ss_pred EEEEEEeEECCCCEEEEEE--CCeecCCCcEeCeEEECCCCcEEEEE-------EeEEc---CCCCCEEEEEEEEC
Confidence 57999987 4 7999998 33333222 11223344555442 35553 34556899999764
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=96.57 E-value=0.0049 Score=34.82 Aligned_cols=57 Identities=25% Similarity=0.455 Sum_probs=33.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE----ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT----TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..+. .+......++-|++. ....+...+...|+|++...
T Consensus 23 L~C~v~~F~P~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgtf~~~----------s~l~~~~~~~~~ytC~V~H~ 86 (98)
T d1d5mb1 23 LVCSVNGFYPGSIEVRWFR--NGQEEKTGVVSTGLIQNGDWTFQTL----------VMLETVPRSGEVYTCQVEHP 86 (98)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCSSEEECCCEECSSSCEEEE----------EEEECCCCTTCEEEEEEECT
T ss_pred EEEEEeeeECCCcEEEEEE--CCEEcCCCCEECeEEeCCCcEEEEE----------EEeeEcCCCCCEEEEEEEEC
Confidence 57999985 4 7999998 332221 122222334444433 22244567778999999654
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=96.57 E-value=0.0059 Score=34.33 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEEcccCcCCCeeEEEEee
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
...+.|.+++.+|+|.|.|...
T Consensus 56 ~a~F~l~~v~~~~~G~Y~C~y~ 77 (96)
T d1nkra1 56 KANFSISRMTQDLAGTYRCYGS 77 (96)
T ss_dssp EEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEEcccCcccCeEEEEEEE
Confidence 4569999999999999999873
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.57 E-value=0.0023 Score=35.53 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCc-CCCeeEEEEcCCCCCccEEEEEEEe
Q psy3125 91 AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNTEPKMNMAIMLNVD 161 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~~~~~~~~~~~L~V~ 161 (163)
.|..+.+.|+......+.|.+++..+. . .....|.+.+-.. +|+|.|.|.... +..+.-++|+.+
T Consensus 13 SGTtV~LTCP~~~~~~I~Wkkn~~~i~--g---~~~~~L~L~~FSE~e~SGyY~C~~~~-~~~~~~LYLKAR 78 (100)
T d1jbja2 13 SGTSVELTCPLDSDENLKWEKNGQELP--Q---KHDKHLVLQDFSEVEDSGYYVCYTPA-SNKNTYLYLKAR 78 (100)
T ss_dssp ETTEEEEECSSCCCTTCEEEETTEEEC--S---CCCSEEEEESCCTTTSCEEEEEECSS-CCCCCCEEECCC
T ss_pred eCCEEEEECCCCCCCceEEeeccccCC--C---CCCcEEEEccccccccCcceEEecCC-CCcceEEEEEEE
Confidence 477888999876666788877665332 2 2222588888665 799999997633 233445565543
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.0025 Score=36.53 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=35.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc-----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI-----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|++ ++..+..+. .....++.|.+.. .|.|..-.-.....|+|++..
T Consensus 24 L~Clv~~f~P~~i~v~W~~--~g~~~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~g~~ytC~V~H 90 (105)
T d1fp5a2 24 LACLIQNFMPEDISVQWLH--NEVQLPDARHSTTQPRKTKGSGFFVFS-------RLEVTRAEWEQKDEFICRAVH 90 (105)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCGGGEEECCCEECSSSCEEEEE-------EEEECHHHHTTGGGEEEEEEC
T ss_pred EEEEEEeeeCCCcEEEEEE--CCEECCCceeEeeeeEecCCCCEEEEE-------EEEECHHHcCCCCEEEEEEEE
Confidence 56999984 4 8999987 333322111 1223445555543 377766555566689999965
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.40 E-value=0.0018 Score=37.04 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=33.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce---EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY---TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|.+ ++..+..+.. ....++.|.+.. .|.|..-.-.+...|+|++...
T Consensus 25 l~C~~~gf~P~~i~v~W~~--~g~~~~~~~~~~~~~~~~~tys~~S-------~l~v~~~~w~~~~~ytC~V~H~ 90 (104)
T d1nfde2 25 LVCLVNDFYPGSATVTWKA--NGATINDGVKTTKPSKQGQNYMTSS-------YLSLTADQWKSHNRVSCQVTHE 90 (104)
T ss_dssp CCEEEEEEBSSCCEEEEEE--TTEEECSSCBCCCCBCSSSCEEEEE-------BCCEEHHHHHTCSCEEEEEECT
T ss_pred EEEEEEEeeCCCCEEEEEE--CCEECCCCEEeccccCCCceEEEEE-------EEEEcHHHcCCCCEEEEEEEEC
Confidence 57999984 5 7899997 3332221111 112234444432 2444444444556899999653
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0021 Score=36.80 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=33.0
Q ss_pred CceEEec-CC--CcEEEEEecCCeeEEecce---EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMG-LG--RPVSWMRKRDLHILTTNIY---TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~-~~--~~v~W~k~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+ +| ..|.|++ ++..+..+.. ....++.|.+.. .|.|..-.......|+|++...
T Consensus 26 L~Cl~~~f~P~~i~v~W~~--~g~~~~~~~~~~~~~~~~~~y~~~S-------~L~v~~~~w~~~~~ytC~V~H~ 91 (104)
T d1o0va1 26 LLCLVSGYTPGTIQITWLE--DGQVMDVDLSTASTTQEGELASTQS-------ELTLSQKHWLSDRTYTCQVTYQ 91 (104)
T ss_dssp EEEEEEEECCCCEEEEEEE--TTEECCGGGEEEEEEEETTEEEEEE-------EEEEEHHHHHTTCCEEEEEEET
T ss_pred EEEEEEEEECCCcEEEEEE--CCEEccCCceeeeEeCCCCeEEEEE-------EEEECHHHcCCCCEEEEEEEEC
Confidence 4699998 45 6899997 3333221111 112233444332 3666544434456799999654
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.003 Score=35.95 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=35.7
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.- ..|.|++ ++..+..+ ......++.|.+.. .|.|..-.-.....|+|++...
T Consensus 25 l~C~v~~f~P~~i~v~W~~--~g~~~~~~~~t~~~~~~~dgtys~~S-------~L~v~~~~w~~~~~ytC~V~H~ 91 (102)
T d1q0xl2 25 LVCTITDFYPGVVTVDWKV--DGTPVTAGMETTQPSKQSNNKYMASS-------YLTLTARAWERHSSYSCQVTHE 91 (102)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEEECTTEEECCCEECTTSCEEEEE-------EEEEEHHHHTTCCEEEEEEEET
T ss_pred EEEEEeeeeCCCCEEEEEE--CCEECCCCeEecccEEcCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEEC
Confidence 568888774 7899997 33332211 11222355565543 3666555545567899999654
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=96.33 E-value=0.00096 Score=39.60 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=26.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|.+++.+|++.|+|..
T Consensus 66 gR~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr 98 (127)
T d3cx5j1 66 DRLSITRDTSKNQFFLKLNSVTTEDTATYYCAR 98 (127)
T ss_dssp TTBCCEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred ccceeecccccceeecceeccccccceEEEeee
Confidence 466666555566788999999999999999975
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.32 E-value=0.0067 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.451 Sum_probs=32.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..+..+ ......|+.|++.. .|.| ..++...|+|++...
T Consensus 22 L~C~~~gFyP~~i~v~W~~--ng~~~~~~~~~~~~~~~~dgty~~~s-------~L~v---~~~~~~~ytC~V~H~ 85 (98)
T d1hdmb1 22 LACYVWGFYPAEVTITWRK--NGKLVMHSSAHKTAQPNGDWTYQTLS-------HLAL---TPSYGDTYTCVVEHI 85 (98)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCCCCSBCCCEECSSSCEEEEE-------EEEE---CCCTTCCEEEEEECT
T ss_pred EEEEEEEEECCCCEEEEEE--CCEeccCCeEeCceEECCCCCEEEEE-------EeEc---CCCCCCEEEEEEEeC
Confidence 56999986 3 8999997 33333211 11222344454432 2444 445556899999764
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.0058 Score=34.63 Aligned_cols=61 Identities=13% Similarity=0.291 Sum_probs=35.2
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|.+ ++..... .......++.|.+.. .|.|..-.-.....|+|++...+
T Consensus 23 L~C~v~~f~P~~i~v~W~~--~g~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 23 LTCMITDFFPEDITVEWQW--NGQPAENYKNTQPIMDTDGSYFVYS-------KLNVQKSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEEEEEeECCCcEEEEEE--CCEEccCcEEeeeecCCCCcEEEEE-------EEEECHHHhCCCCEEEEEEEECC
Confidence 57999985 5 8999997 3332211 111223445555443 36665444344568999997643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=96.30 E-value=0.0097 Score=33.60 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=32.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|++ ++..+..+ ......++.|++.. .|.+. .+|...|+|++...
T Consensus 24 L~C~~~gFyP~~i~v~W~~--ng~~~~~~~~~~~~~~~~dgtf~~~s-------~l~v~---~~~~~~ytC~V~H~ 87 (99)
T d1uvqa1 24 LICLVDNIFPPVVNITWLS--NGQSVTEGVSETSFLSKSDHSFFKIS-------YLTFL---PSADEIYDCKVEHW 87 (99)
T ss_dssp EEEEEEEECSSCCEEEEEE--TTEEECTTEEECCCEECTTSCEEEEE-------EEEEC---CCTTCCEEEEEECT
T ss_pred EEEEEEEEECCCCEEEEEE--CCEeccCCcEecceEECCCCCEEEEE-------EEEEc---CCCCCEEEEEEEeC
Confidence 56999987 4 8899998 33333211 11122334444332 24443 45566899999754
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0046 Score=34.92 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=19.5
Q ss_pred eEEEEEcccCcCCCeeEEEEee
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
...+.|.+++.+|+|.|+|...
T Consensus 59 ~a~F~l~~v~~~~~G~Y~C~y~ 80 (98)
T d1ugna2 59 RAIFSVGPVSPSRRWWYRCYAY 80 (98)
T ss_dssp EEEEEECCCCTTSCEEEEEEEE
T ss_pred EEEEEeeecccCCCeEEEEeeE
Confidence 4579999999999999999873
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.002 Score=36.73 Aligned_cols=60 Identities=17% Similarity=0.375 Sum_probs=34.5
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..+..+ ......++.|.+.. .|.|..-.-.....|+|++...
T Consensus 25 L~C~v~~f~P~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~w~~~~~ytC~V~H~ 91 (102)
T d1rzfl2 25 LVCLISDFYPGAVTVAWKA--DSSPVKAGVETTTPSKQSNNKYAASS-------YLSLTPEQWKSHRSYSCQVTHE 91 (102)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCSSEEECCCEECTTSCEEEEE-------EEEECHHHHHHSSCEEEEEEET
T ss_pred EEEEEEeeCCCCeEEEEEE--CCEECCCCEEeCCcEECCCCEEEEEE-------EEEECHHHhCCCCEEEEEEEEC
Confidence 56999984 4 7899997 33322211 11223345555443 3666554433445799999654
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=96.26 E-value=0.0033 Score=35.79 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=34.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|.+. +.... ........++.|.+.. .|.|..-.-.....|+|++....
T Consensus 24 l~C~v~gf~P~~i~v~W~~~--g~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 24 LTCMVTDFMPEDIYVEWTNN--GKTELNYKNTEPVLDSDGSYFMYS-------KLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp EEEEEEEEBSSCCEEEEEET--TEECSSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTCCCEEEEEECTT
T ss_pred EEEEEEEeECCCcEEEEEEC--CEEccCcEEccceeCCCCcEEEEE-------EEEECHHHcCCCCEEEEEEEeCC
Confidence 56999984 5 89999873 22211 1112223455555443 36665444344557999997643
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.17 E-value=0.013 Score=33.38 Aligned_cols=58 Identities=19% Similarity=0.403 Sum_probs=32.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.|. | ..|.|++ ++..+.. .......++.|.+.. .|.| ..+|...|+|.+....
T Consensus 23 L~C~v~gF~P~~i~V~W~~--ng~~~~~~~~~~~~~~~dgty~~~S-------~L~v---~~~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 23 LVCFVSNLFPPMLTVNWHD--HSVPVEGFGPTFVSAVDGLSFQAFS-------YLNF---TPEPSDIFSCIVTHEP 86 (103)
T ss_dssp EEEEEEEEBSSCEEEEEEE--TTEECSSCCCEEEEEETTTEEEEEE-------EEEE---CCCTTCCEEEEEEETT
T ss_pred EEEEEeeEECCCCEEEEEE--CCeecCCcEeceEEeCCCCcEEEEE-------EEEE---ecCCCCEEEEEEEeCC
Confidence 46999985 4 7899987 3332211 111122344444332 2444 4456668999997643
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0076 Score=33.30 Aligned_cols=57 Identities=18% Similarity=0.387 Sum_probs=32.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.- ..|.|++ ++..+..+. .....++.|.... .|.|. .+|...|+|++...
T Consensus 20 L~C~a~gFyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~~gt~~~~s-------~l~v~---~~~~~~ytC~V~H~ 83 (89)
T d2mhaa1 20 LRCWALGFYPADITLTWQL--NGEELIQDMELVETRPAGDGTFQKWA-------SVVVP---LGKEQYYTCHVYHQ 83 (89)
T ss_dssp EEEEEESCBSSCCEEEEEE--TTEEECTTCEECCCEECSSSCEEEEE-------EEEEE---SSTTTTCEEEEECS
T ss_pred EEEEEEeEECCCCEEEEEE--CCEEeCCCEEECcEecCCCCcEEEEE-------EEEec---CcCCCEEEEEEEEC
Confidence 579999864 7899998 333332221 1222334444332 35453 34445799999653
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0039 Score=34.99 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=30.8
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|.- ..|.|++ ++..+..+.. ....++.|.+. ..|. +...+...|+|++...
T Consensus 20 L~C~~~gFyP~~i~vtW~~--~g~~~~~~~~~~~~~~~~~~~~~~~-------s~l~---v~~~~~~~ytC~V~H~ 83 (95)
T d1k5na1 20 LRCWALGFYPAEITLTWQR--DGEDQTQDTELVETRPAGDRTFQKW-------AAVV---VPSGEEQRYTCHVQHE 83 (95)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECGGGCEECCCEECSSSCEEEE-------EEEE---EETTCGGGEEEEEECT
T ss_pred EEEEEEeEeCCCCEEEEEE--CCEEcCCCceeccEEcCCCCeEEEE-------EEEE---EEcCCCCEEEEEEEEC
Confidence 579999874 8899998 3332221111 11122233322 1233 3445556899999764
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=96.04 E-value=0.012 Score=33.17 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=17.4
Q ss_pred eEEEEEcccCcCCCeeEEEEe
Q psy3125 46 EWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
...+.|..+...|+|.|+|..
T Consensus 58 ~~~f~~~~~~~~~~G~Y~C~y 78 (99)
T d1nkra2 58 TFQADFPLGPATHGGTYRCFG 78 (99)
T ss_dssp EEEEEEEEEECCSCEEEEEEE
T ss_pred cEEEEEeccccccCEEEEEEe
Confidence 455678888889999999976
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=95.96 E-value=0.0043 Score=36.76 Aligned_cols=59 Identities=19% Similarity=0.404 Sum_probs=34.2
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceE---------ecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYT---------YTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~---------~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~ 67 (163)
|.|.+.+.- ..|.|++ ++..+..+... ...++.|.+.. .|.|..-.-.+.| .|+|++.
T Consensus 25 L~C~v~gf~P~~i~v~W~~--~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS-------~L~v~~~~W~~~g~~ytC~V~ 95 (127)
T d1ogae2 25 LVCLATGFYPDHVELSWWV--NGKEVHSGVSTDPQPLKEQPALNDSRYSLSS-------RLRVSATFWQNPRNHFRCQVQ 95 (127)
T ss_dssp EEEEEEEEBSSCEEEEEEE--TTEEECSSEEECSSCEESCTTSTTCCEEEEE-------EEEEEHHHHTCTTCEEEEEEE
T ss_pred EEEEEEeccCCCeEEEEEE--CCEEccCcEEecceeeeecccCCCCeEEEEE-------EEEECHHHhCCCCCEEEEEEE
Confidence 569999864 7899987 43333211111 11244555442 3666655556656 7999996
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 96 H 96 (127)
T d1ogae2 96 F 96 (127)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0038 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
...+.|.+|+.+|+|.|+|....
T Consensus 56 ~a~F~i~~v~~~~~G~Y~C~y~~ 78 (96)
T d1ugna1 56 KGQFPIPSITWEHTGRYRCYYGS 78 (96)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEEecCHHHCCeEEEEEeC
Confidence 45799999999999999998743
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.003 Score=35.90 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=32.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|.+ ++...-.........++.|.+.. .|.|..-.. +.|.|+|++..
T Consensus 25 l~Cl~~gf~P~~i~v~W~~-~~~~~~~~~~~~~~~~g~~s~~S-------~L~v~~~~w-~~~~ytC~V~H 86 (101)
T d1kcvh2 25 LGCLVKGYFPEPVTVAWNE-GALSSGVLTVSAVLQSGLYTLSS-------NTTVASGTW-PSASVTCLVAH 86 (101)
T ss_dssp EEEEEEEEBSSCCEEEEGG-GTCCTTEEECCCEEETTEEEEEE-------EEEEETTTT-TTSCCEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEec-CCCcccceeeeeecCCCCEEEEE-------EEEEchhhc-CCCeEEEEEEe
Confidence 56999984 4 8999965 22211000111122345555432 366654443 35789999964
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.83 E-value=0.009 Score=33.83 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=34.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+.- ..|.|.+. +.... ........++.|.+.. .|.|..-.......|+|.+....
T Consensus 24 L~C~v~~f~P~~i~v~W~~~--g~~~~~~~~~~~~~~~dgt~s~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 24 ITCMVKGFYPPDIYTEWKMN--GQPQENYKNTPPTMDTDGSYFLYS-------KLNVKKETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp EEEEEEEEBSSCCEEEEEET--TEECSSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEEEEEEECCCCEEEEEEC--CeeccCcEEcccEeCCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEeCC
Confidence 569998774 78999873 22211 1111223345555432 25665544445557999996543
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.01 Score=33.60 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=33.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..... .......++.|.+.. .|.|..-.....-.|+|++...
T Consensus 24 L~Clv~gf~P~~i~v~W~~--~g~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~w~~g~~ytC~V~H~ 89 (102)
T d1l6xa2 24 LTCLVKGFYPSDIAVEWES--NGQPENNYKTTPPVLDSDGSFFLYS-------KLTVDKSRWQQGNVFSCSVMHE 89 (102)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEEECCEEECCCEECTTSCEEEEE-------EEEEEHHHHHTTCCEEEEEECT
T ss_pred EEEEEEEeECCCCEEEEEE--CCEECCCeEEcceEECCCCCEEEEE-------EEEECHHHcCCCCEEEEEEEeC
Confidence 57999985 5 7999997 3322210 111222344454432 3666544434445799999654
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0058 Score=35.03 Aligned_cols=60 Identities=13% Similarity=0.292 Sum_probs=33.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc-----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI-----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..+..+. .....++.|.+.. .|.|..-.-.....|+|.+...
T Consensus 25 L~Cl~~~f~P~~i~v~W~~--ng~~~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~W~~g~~ytC~V~H~ 92 (107)
T d1mjul2 25 VVCFLNNFYPKDINVKWKI--DGSERQNGVLNSWTDQDSKDSTYSMSS-------TLTLTKDEYERHNSYTCEATHK 92 (107)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEEECTTEEEEECCCCTTTCCEEEEE-------EEEEEHHHHHTCCEEEEEEECT
T ss_pred EEEEEEEeECCCCEEEEEE--CCEEccCCeEeccccEecCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEEC
Confidence 56999876 4 7899987 333322111 1112344455442 3555544433356899999653
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.07 Score=30.20 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=42.7
Q ss_pred eeCCCeEEEecCCC---C--ceeEEEEeCCCeEEEecC-----CCC---ceEEEEecccCcCCCeeEEEEc-CCCCC---
Q psy3125 89 LSAGPLLNFAFPDL---L--TTNIYTYTGDARFSVIHP-----QNS---DEWNMKIDYAQKRDAGIYECQV-NTEPK--- 151 (163)
Q Consensus 89 v~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~-----~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~~--- 151 (163)
+..|..+.+.|... + ...+.|+.++..+..... ..+ ..+.|.+...+.+|...|+|+| +..+.
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~ 92 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 92 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence 56788888888532 2 235778877665543211 111 1345777766666666899999 44322
Q ss_pred ----ccEEEEEEEec
Q psy3125 152 ----MNMAIMLNVDG 162 (163)
Q Consensus 152 ----~~~~~~L~V~~ 162 (163)
.+....|+|..
T Consensus 93 ~~~~~~t~~~L~V~~ 107 (109)
T d1vcaa1 93 VPTVRQAVKELQVYI 107 (109)
T ss_dssp SCSEEEEEEECCEEC
T ss_pred cccccceeEEeEEEe
Confidence 22345577653
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=95.63 E-value=0.015 Score=32.66 Aligned_cols=57 Identities=21% Similarity=0.459 Sum_probs=32.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.- ..|.|++ ++..+..+ ......++-|.+.. .|. +...+...|+|++...
T Consensus 21 L~C~~~gF~P~~i~v~W~~--ng~~~~~~~~~~~~~~~~dgty~~~s-------~l~---v~~~~~~~ytC~V~H~ 84 (97)
T d1uvqb1 21 LVCSVTDFYPGQIKVRWFR--NDQEETAGVVSTPLIRNGDWTFQILV-------MLE---MTPQRGDVYTCHVEHP 84 (97)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEEECTTEEECCCEECSSSCEEEEE-------EEE---CCSCTTCCEEEEEECT
T ss_pred EEEEEeeeECCCeEEEEEE--CCEEcCCCcEeceeecCCCceEEEEE-------Eec---cCCCCCCEEEEEEEeC
Confidence 569999763 8999997 33222211 11222344444332 233 3456667999999654
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.013 Score=33.50 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=33.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|.+ ++.....+.. ....++.|.+.. .|.|..-.-.....|+|++...
T Consensus 25 L~Clv~~f~P~~i~v~W~~--ng~~~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~W~~~~~ytC~V~H~ 92 (107)
T d1c5cl2 25 VVCLLNNFYPREAKVQWKV--DNALQSGNSQESVTEQDSKDSTYSLSS-------TLTLSKADYEKHKVYACEVTHQ 92 (107)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCSSEEEEECCCCTTTCCEEEEE-------EEEEEHHHHTTCCEEEEEEECT
T ss_pred EEEEEEEeeCCCCEEEEEE--CCEECCCCEEEecccccCCCCcEEEEE-------EEEECHHHhCCCCEEEEEEEEC
Confidence 56999986 4 7899987 3322221111 112244555443 3666544434445899999653
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=95.48 E-value=0.0043 Score=34.90 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=31.5
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE---ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT---TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|. | ..|.|++ ++.... ........++.|++.. .|.|. .+|...|+|++..
T Consensus 21 L~C~a~gF~P~~i~v~W~~--~~~~~~~~~~~~~~~~~dgty~~~S-------~L~v~---~~~~~~ytC~V~H 82 (96)
T d2h26a1 21 LVCHVSGFYPKPVWVMWMR--GEQEQQGTQLGDILPNANWTWYLRA-------TLDVA---DGEAAGLSCRVKH 82 (96)
T ss_dssp EEEEEEEEBSSCEEEEEEE--TTEECTTCEECCCEECTTSCEEEEE-------EEEEE---GGGCTTEEEEEEE
T ss_pred EEEEEEEEECCCcEEEEEE--CcccCCCceeCccEeCCCCcEEEEE-------EEEEe---CccCCEEEEEEEe
Confidence 57999985 4 6899998 222221 1112223344454432 25554 3455689999964
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=95.33 E-value=0.025 Score=30.95 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=31.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecce-EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+.- ..|.|.+ ++........ ....++.|... .+..+... ..|+|++...+
T Consensus 18 l~Cl~~gF~P~~i~v~W~~--~g~~~~~~~~~~~~~~gtys~~----------s~~~~~~~--~~yTC~V~H~~ 77 (86)
T d1hxma2 18 VACLVKEFYPKDIRINLVS--SKKITEFDPAIVISPSGKYNAV----------KLGKYEDS--NSVTCSVQHDN 77 (86)
T ss_dssp EEEEEESCBSSCCEEEEEC--SSEEEECCCEEEECTTSSEEEE----------EEEEETTT--TTCEEEEEETT
T ss_pred EEEEEeeEECCCCEEEEEE--CCEEccCcEEeeeccCCcEEEE----------EEEecCCC--CEEEEEEEECC
Confidence 469999874 7888975 3333332221 23344555433 22233343 46999997643
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0077 Score=34.48 Aligned_cols=60 Identities=20% Similarity=0.472 Sum_probs=32.7
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecceE--------ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIYT--------YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..+..+... ...++.|.+.. .|.|..-.......|+|++...
T Consensus 25 l~C~~~~f~P~~i~v~W~~--~g~~~~~~~~~t~~~~~~~~~~~gtys~~S-------~L~v~~~~w~~g~~ytC~V~H~ 95 (108)
T d1ow0a2 25 LTCLARGFSPKDVLVRWLQ--GSQELPREKYLTWASRQEPSQGTTTFAVTS-------ILRVAAEDWKKGDTFSCMVGHE 95 (108)
T ss_dssp EEEEEEEESSSCCEEEEEE--TTEECCGGGSEECCCEECSCSSSCCEEEEE-------EEEEEHHHHHHTCCEEEEEECT
T ss_pred EEEEEEEeECCCEEEEEEE--CCeEcCCCceEcccceecccCCCCcEEEEE-------EEEEcHHHhCCCCEEEEEEEeC
Confidence 56999985 4 6899997 33322211111 01234444432 2555444433456899999653
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.29 E-value=0.0053 Score=34.89 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=32.4
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|.- ..|.|.+. +.............++.|.+.. .|.|..-.- +.+.|+|.+...
T Consensus 25 l~Cl~~gf~P~~i~v~W~~~-~~~~~~~~~~~~~~~g~ys~~S-------~L~v~~~~w-~~~~ytC~V~H~ 87 (102)
T d1mjuh2 25 LGCLVKGYFPEPVTLTWNSG-SLSSGVHTFPAVLQSDLYTLSS-------SVTVTSSTW-PSQSITCNVAHP 87 (102)
T ss_dssp EEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCEEETTEEEEEE-------EEEECTTTT-TTSCCEEEEEEG
T ss_pred EEEEEeeeeCCCeEEEECcC-CccCCeEecccccCCCCEEEEE-------EEEEehhHc-CCceEEEEEEEC
Confidence 469999853 78999542 2111001111222345555432 366655544 357899999653
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=95.28 E-value=0.0065 Score=34.30 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=31.5
Q ss_pred CceEEecCC---CcEEEEEecCCeeE--Eec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHIL--TTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~--~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.- ..|.|+|.+..... ..+ ......++.|++.. .|.| ...+...|+|++..
T Consensus 19 L~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v---~~~~~~~ytC~V~H 85 (98)
T d1u58a1 19 LRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHI-------DVYV---DGGLEHVYSCRVKG 85 (98)
T ss_dssp EEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEE-------EEEE---CTTCGGGEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEE-------EEEE---CCCCCCEEEEEEEe
Confidence 579999874 78899874321111 111 11122344454332 2444 44566789999954
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.023 Score=32.25 Aligned_cols=61 Identities=10% Similarity=0.228 Sum_probs=31.5
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcC--CCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR--DAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~--D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|.+.+. .... ........++.|.+.. .|.|..-.-. ....|+|++...
T Consensus 26 l~Cl~~gF~P~~i~v~W~~~~~-~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~eW~~~~~~~ytC~V~H~ 93 (105)
T d1dn0b2 26 VGCLAQDFLPDSITFSWKYKNN-SDISSTRGFPSVLRGGKYAATS-------QVLLPSKDVMAGTDEHVVCKVQHP 93 (105)
T ss_dssp EEEEEEEEBSSCCEEEEEETTS-CEECCEEECCCEEETTEEEEEE-------EEEECTTCC---CCCEEEEEEECT
T ss_pred EEEEEecccCCcEEEEEEECCc-cccCCEEcceEEccCCCEEEEE-------EEEEcHHHhccCCCCEEEEEEEEC
Confidence 46999985 4 8899987332 2211 0111122344444332 3555443321 224799999654
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.97 E-value=0.017 Score=31.95 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=22.0
Q ss_pred EEEEcccCc-CCCeeEEEEeeCCCCeeEEEEEEEEc
Q psy3125 48 NMKIDYAQK-RDAGIYECQVNTEPKMNMAIMLNVDD 82 (163)
Q Consensus 48 ~L~i~~v~~-~D~G~Y~C~~~~~~~~~~~~~l~V~~ 82 (163)
.|.+.+.++ +|+|.|.|....... +..++|+..+
T Consensus 45 ~L~L~~FSE~e~SGyY~C~~~~~~~-~~~LYLKARV 79 (100)
T d1jbja2 45 HLVLQDFSEVEDSGYYVCYTPASNK-NTYLYLKARV 79 (100)
T ss_dssp EEEEESCCTTTSCEEEEEECSSCCC-CCCEEECCCC
T ss_pred EEEEccccccccCcceEEecCCCCc-ceEEEEEEEE
Confidence 467777666 899999997643222 3456666543
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=94.84 E-value=0.026 Score=31.34 Aligned_cols=58 Identities=16% Similarity=0.355 Sum_probs=31.6
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|++ ++..+..+.. ....++.|++.. .|.| ..+|...|+|++...+
T Consensus 20 L~C~~~gFyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~~~~ty~~~s-------~l~v---~~~~~~~ytC~V~H~~ 85 (94)
T d1hyrc1 20 VTCRASGFYPWNITLSWRQ--DGVSLSHDTQQWGDVLPDGNGTYQTWV-------ATRI---CQGEEQRFTCYMEHSG 85 (94)
T ss_dssp EEEEEEEEBSSCCEEEEEE--TTEECCSTTSEECCCEECSSSCEEEEE-------EEEE---ETTCGGGEEEEEEETT
T ss_pred EEEEEEEEECCCcEEEEeE--CCeEcCCCeEEcCceEECCCCcEEEEE-------EEEE---cCCCCCEEEEEEEECC
Confidence 56999986 4 8999998 3333221211 111233333321 2433 3455567999996543
|
| >d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.067 Score=28.59 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=18.0
Q ss_pred eEEEEEcccCcCCCeeEEEEee
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
+.+|.+-+....-.|.|.|+..
T Consensus 47 ~ktlnLG~~~~DPRG~Y~C~~~ 68 (81)
T d1sy6a1 47 KKKWNLGSNAKDPRGMYQCKGS 68 (81)
T ss_dssp CCCEEEEEGGGCCEEEEEEESS
T ss_pred cceeecCCcccCCCcceEcCCC
Confidence 4567888888888999999874
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.063 Score=29.79 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=28.3
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCC--ccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPK--MNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~--~~~~~~L~V~ 161 (163)
..+|+|+++.++|+|.|.-.| +..|. ....+.|.|.
T Consensus 62 nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~ 100 (101)
T d1hnfa1 62 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 100 (101)
T ss_dssp TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred CCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence 345999999999999999998 76663 3566777664
|
| >d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.052 Score=29.31 Aligned_cols=10 Identities=50% Similarity=0.983 Sum_probs=8.5
Q ss_pred CCCeeEEEEe
Q psy3125 57 RDAGIYECQV 66 (163)
Q Consensus 57 ~D~G~Y~C~~ 66 (163)
-|+|.|+|.-
T Consensus 61 ~~aGnYTChk 70 (87)
T d3d85d1 61 GDAGQYTCHK 70 (87)
T ss_dssp GGCEEEEEEE
T ss_pred cCCcceeEeC
Confidence 5899999983
|
| >d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.039 Score=29.82 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 92 GPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
+..+.+.|...-...+.|.+++..- +..+ +. +|+|.---..|+|.|+|.-
T Consensus 21 ~~~V~L~C~t~eE~~I~W~kd~~se-~~~~--Gn--tltV~VkE~~~aGnYTChk 70 (87)
T d3d85d1 21 GEMVVLTCDTPEEDGITWTLDQSSE-VLGS--GK--TLTIQVKEFGDAGQYTCHK 70 (87)
T ss_dssp CEEEEEECSSSCCSSCEEEETTCCC-CCEE--SS--EEEEEECSGGGCEEEEEEE
T ss_pred ccEEEEecCCCcccccEEeeCCccc-cccC--CC--EEEEEEEeccCCcceeEeC
Confidence 3456677866555688888876541 1111 11 2555444456999999983
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.012 Score=33.31 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=31.7
Q ss_pred CceEEecCC---CcEEEEEecCCe-eEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH-ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.- ..|.|.+ ++.. -..........++.|.+.. .|.|..-... ...|.|.+..
T Consensus 25 l~Cl~~~f~P~~i~v~W~~-~~~~~~~~t~~~~~~~~gtys~~S-------~L~v~~~~w~-~~~ytC~V~H 87 (103)
T d1c5ch2 25 LGCLVKDYFPEPVTVSWNS-GALTSGVHTFPAVLQSSGLYSLSS-------VVTVPSSSLG-TQTYICNVNH 87 (103)
T ss_dssp EEEEEEEEBSSCCEEEEGG-GTBCTTEEECCCEECTTSCEEEEE-------EEEEEGGGGG-TCCCEEEEEE
T ss_pred EEEEEEeEeCCCeEEEECc-CCCCCCEEECCCeECCCCCEEEEE-------EEEECccccC-CCeEEEEEEe
Confidence 468888764 7899954 2221 1111222223445555442 3666544332 3579999965
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=94.23 E-value=0.014 Score=33.27 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.1
Q ss_pred CceEEecC-C--CcEEEEEe
Q psy3125 1 MACTVMGL-G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~ 17 (163)
|.|.+.+. | ..|.|++.
T Consensus 29 l~Clv~~f~P~~i~v~W~~~ 48 (107)
T d1hxmb2 29 YLCLLEKFFPDVIKIHWEEK 48 (107)
T ss_dssp EEEEEEEESSCCEEEEEEES
T ss_pred EEEEEeEEeCCceEEEEEEC
Confidence 46999985 4 78999973
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.011 Score=32.40 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=23.1
Q ss_pred EEEcccCc-CCCeeEEEEeeCC--CCeeEEEEEEEE
Q psy3125 49 MKIDYAQK-RDAGIYECQVNTE--PKMNMAIMLNVD 81 (163)
Q Consensus 49 L~i~~v~~-~D~G~Y~C~~~~~--~~~~~~~~l~V~ 81 (163)
|.+.+.++ +++|.|.|.+... ......++|++.
T Consensus 50 l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR 85 (91)
T d1xiwa_ 50 LSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 85 (91)
T ss_dssp EEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred EEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence 77788877 8999999998432 233455667654
|
| >d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.91 E-value=0.011 Score=34.13 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=31.0
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCC---CeeEEEEeeCCC
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD---AGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D---~G~Y~C~~~~~~ 70 (163)
|.|.+.+.- ..|.|.+.+...... .......++.|.+. ....+..+| .-.|.|++....
T Consensus 32 L~C~v~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~----------S~L~v~~~~W~~~~~ytC~V~H~~ 96 (111)
T d1pfca_ 32 LTCMITGFYPADINVEWDSSEPSDYKN-TPPVFDTDGSFFLY----------SRLKVDTDAWNNGESFTCSVMHEA 96 (111)
T ss_dssp EEEEEESCCSSCCEEESSSCCTTTEEE-EEEECCSSCCCEEE----------EEECCCSSCCHHHHCCEEEEEETT
T ss_pred EEEEEEeeECCCcEEEEeeCCCCCcEE-cccEECCCCcEEEE----------EEEEECHHHhCCCCEEEEEEEeCC
Confidence 569999864 789997633221111 11122233444433 223445555 346999996543
|
| >d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.046 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=22.1
Q ss_pred eEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEEEc
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDD 82 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~ 82 (163)
..+|.+-+....-.|.|.|..... ....|+|..
T Consensus 52 ~ktlnLG~~~~DPRGiY~C~g~~~----~s~~LQVYY 84 (86)
T d1jbja1 52 KNTWNLGNNAKDPRGTYQCQGAKE----TSNPLQVYY 84 (86)
T ss_dssp SSCCEEEETTSCCEEEEEEEESSC----EEEEEEEEC
T ss_pred cceeecCCcccCCCcceEcCCCcc----cCccEEEEE
Confidence 345777788888889999987432 122466654
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.044 Score=30.85 Aligned_cols=60 Identities=17% Similarity=0.380 Sum_probs=30.3
Q ss_pred CceEEecC-C----CcEEEEEecCCeeEE--ecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G----RPVSWMRKRDLHILT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~----~~v~W~k~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..+.|.+.+. .... ........++.|.+.. .|.|..-.-.....|+|++..
T Consensus 21 L~C~v~gf~P~~~~v~~~W~~~~~-~~~~~~~~~~~~~~~gt~s~~S-------~L~v~~~~w~~g~~~tC~V~H 87 (103)
T d1fp5a1 21 ITCLVVDLAPSKGTVNLTWSRASG-KPVNHSTRKEEKQRNGTLTVTS-------TLPVGTRDWIEGETYQCRVTH 87 (103)
T ss_dssp EEEEEEESSCCSSCCEEEEEETTC-CCCCCCEEEEEEETTTEEEEEE-------EEECCHHHHHTTCCEEEEEEC
T ss_pred EEEEEEeeECCCceEEEEEcCCCc-eecccEEcccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEE
Confidence 57999985 3 2456766332 2211 1111222345555442 255543333335689999965
|
| >d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.0027 Score=36.10 Aligned_cols=17 Identities=29% Similarity=0.827 Sum_probs=13.4
Q ss_pred CceEEecC--C--CcEEEEEe
Q psy3125 1 MACTVMGL--G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~~--~--~~v~W~k~ 17 (163)
|.|.+.+. | ..|.|.+.
T Consensus 23 L~C~v~~f~~p~~i~v~W~~~ 43 (101)
T d1ow0a1 23 LTCTLTGLRDASGVTFTWTPS 43 (101)
T ss_dssp CEEEETTCCSCCCCCCCBSSC
T ss_pred EEEEEeCCCCCcceEEEEEEC
Confidence 67999984 4 68999864
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=93.53 E-value=0.066 Score=30.98 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=30.9
Q ss_pred CceEEecC-C----CcEEEEEecCCeeEEe---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G----RPVSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~----~~v~W~k~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|++ ++..... .......++.|.+.. .|.|..-.-.....|+|+|...
T Consensus 37 L~C~v~gf~P~~~~v~v~W~~--~g~~~~~~~~~~~~~~~~gt~s~~S-------~L~v~~~eW~~g~~ytC~V~H~ 104 (119)
T d1igtb3 37 VTCVVVDVSEDDPDVQISWFV--NNVEVHTAQTQTHREDYNSTLRVVS-------ALPIQHQDWMSGKEFKCKVNNK 104 (119)
T ss_dssp EEEEEEEECTTCCCCEEEEEE--TTEECSSTTCBCCEEECSSSEEEEE-------EEECCHHHHHTTCEEEEEEECT
T ss_pred EEEEeecccCCCCcEEEEEee--CCcccCCCEECccEECCCCcEEEEE-------EEEEeHHHhCCCCeEEEEEEEC
Confidence 46999874 2 5678987 3222211 111222344444432 2555433333445799999753
|
| >d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.097 Score=29.40 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=31.0
Q ss_pred CceEEecCC-----CcEEEEEecCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-----RPVSWMRKRDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.- ..+.|.+ ++..+... .......++.|.+.. .|.|..-.-...-.|+|.+...
T Consensus 23 L~C~~~gf~P~~~~v~~~W~~-~~~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~g~~ytC~V~H~ 90 (105)
T d1l6xa1 23 VTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNK 90 (105)
T ss_dssp EEEEEEEECSSSCCCEEEEEE-TTEEECCCEECCCEECTTSCEEEEE-------EEECCHHHHHTTCCEEEEEECT
T ss_pred EEEEEEEEeCCCCeEEEEEee-CCeECCCcEECCcEECCCCcEEEEE-------EEEEcHHHcCCCCEEEEEEEeC
Confidence 469998752 3566876 22222210 111222344554442 3555444333445899999653
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.79 E-value=0.15 Score=28.56 Aligned_cols=61 Identities=16% Similarity=0.393 Sum_probs=29.8
Q ss_pred CceEEecC-C----CcEEEEEecCCeeEEe--cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G----RPVSWMRKRDLHILTT--NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~----~~v~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|.+. +..+... .......++.|.+.. .|.|..-.-...-.|+|++...
T Consensus 21 l~Clv~~f~p~~~~v~v~W~~~-g~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~g~~~tC~V~H~ 88 (103)
T d1i1ca1 21 VTCVVVDISQNDPEVRFSWFID-DVEVHTAQTHAPEKQSNSTLRSVS-------ELPIVERDWLNGKTFKCKVNSG 88 (103)
T ss_dssp EEEEEEEECTTCCCCEEEEEES-SCEECCCEECCCEECTTSCEEEEE-------EEECCHHHHHTTCCEEEEEECS
T ss_pred EEEEEEeeECCCCCEEEEEEEC-CccccCCEECCcEECCCCCEEEEE-------EEEECHHHhcCCCEEEEEEEeC
Confidence 46999874 2 47789873 2222211 111122334444332 2444333223334699999653
|
| >d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 gamma chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.97 Score=23.91 Aligned_cols=60 Identities=12% Similarity=0.229 Sum_probs=38.7
Q ss_pred CeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEE
Q psy3125 93 PLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAI 156 (163)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~ 156 (163)
..+-+.|. .....+.|+.++....... ....+|.+-....+=-|.|.|.+....+.+-++
T Consensus 18 g~V~L~Cn-~~~k~i~W~kdg~~i~~~~---~~~ktlnLG~~~~DPRG~Y~C~~~~~~s~~LQV 77 (81)
T d1sy6a1 18 GSVLLTCD-AEAKNITWFKDGKMIGFLT---EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 77 (81)
T ss_dssp SEEEEEEC-SCSSEEEEEETTEEEEEEE---SSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEE
T ss_pred CeEEEEeC-CCCcEEEEecCCeEeeccc---CCcceeecCCcccCCCcceEcCCCCcCCeeEEE
Confidence 34667774 3335888999888766543 122348888888888999999884333333333
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=0.64 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=14.7
Q ss_pred EEEEecccCcCCCeeEEEEc
Q psy3125 127 WNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a 146 (163)
+.|.|..-.......|+|.|
T Consensus 69 S~L~v~~~~w~~~~~ytC~V 88 (104)
T d1o0va1 69 SELTLSQKHWLSDRTYTCQV 88 (104)
T ss_dssp EEEEEEHHHHHTTCCEEEEE
T ss_pred EEEEECHHHcCCCCEEEEEE
Confidence 44777766555667799999
|