Psyllid ID: psy313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEEPRNYDFNF
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccccEEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEccccccccEEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
makipdiafsltldsveitsldfvapdeevfDYWTDGINALlgnkmtskeadNDLETLLSMEIKIRLLdaegveiphhppevpeeprnydfnf
Flexible Loop (DISEMBL)
makipdiafsltldsveITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEiphhppevpeeprnydfnf
Low Complexity Region (SEG)
MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAegveiphhppevpeepRNYDFNF
Disordered region (IsUnstruct)
*****DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKM*******DLETLLSMEIKIRLLDAE**********************
Disordered Region (DISOPRED)
****PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG**********DLETLLSMEIKIRLLDAEGVEIPHHP*E*PEEP**YDFNF
Disordered Region (DISEMBL)
MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEE********
Disordered Region (DISPRO)
MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEEPRNYDFNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEEPRNYDFNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q92556	727	Engulfment and cell motil	yes	N/A	0.946	0.121	0.533	4e-21
Q8BPU7	727	Engulfment and cell motil	yes	N/A	0.946	0.121	0.533	4e-21
Q8BHL5	732	Engulfment and cell motil	no	N/A	0.924	0.117	0.488	4e-18
Q5RCC1	720	Engulfment and cell motil	no	N/A	0.924	0.119	0.477	5e-18
Q96JJ3	720	Engulfment and cell motil	no	N/A	0.924	0.119	0.477	5e-18
A4FUD6	720	Engulfment and cell motil	no	N/A	0.924	0.119	0.477	2e-17
Q96BJ8	720	Engulfment and cell motil	no	N/A	0.946	0.122	0.471	2e-10
Q499U2	720	Engulfment and cell motil	no	N/A	0.946	0.122	0.483	3e-10
Q8BYZ7	720	Engulfment and cell motil	no	N/A	0.946	0.122	0.471	1e-09
Q54YW1	977	ELMO domain-containing pr	yes	N/A	0.763	0.072	0.342	1e-07

>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 4   IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEI 63
           + ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSMEI
Sbjct: 637 VLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEI 694

Query: 64  KIRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           K+RLLD E ++IP  PP +P+EP NYDF +
Sbjct: 695 KLRLLDLENIQIPDAPPPIPKEPSNYDFVY 724

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.
Homo sapiens (taxid: 9606)

>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 4   IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEI 63
           + ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSMEI
Sbjct: 637 VLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEI 694

Query: 64  KIRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           K+RLLD E ++IP  PP +P+EP NYDF +
Sbjct: 695 KLRLLDLENIQIPDAPPPIPKEPSNYDFVY 724

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
           ++AFS+  D  E  +L+F+AP++  +  W DG++ALLG  M+S+   +DL+TLLSME+K+
Sbjct: 644 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 701

Query: 66  RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           RLLD E ++IP  PP VP+EP +YDF +
Sbjct: 702 RLLDLENIQIPEAPPPVPKEPSSYDFVY 729

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
           ++AFS+  D  E  +L+F+AP++  +  W DG++ALLG  M+S+   +DL+TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 689

Query: 66  RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           RLLD E ++IP  PP +P+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPIPKEPSSYDFVY 717

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Pongo abelii (taxid: 9601)

>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
           ++AFS+  D  E  +L+F+AP++  +  W DG++ALLG  M+S+   +DL+TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 689

Query: 66  RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           RLLD E ++IP  PP +P+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPIPKEPSSYDFVY 717

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
           ++AFS+  D  E  +L+F+AP++  +  W DG++ALLG  M+S+   +D +TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDRDTLLSMEMKL 689

Query: 66  RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           RLLD E ++IP  PP VP+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPVPKEPSSYDFVY 717

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Bos taurus (taxid: 9913)

>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3 PE=2 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 6   DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
           ++AFS++ D  E  + L+F+AP +  F  WTDG++ALLG+ M S++   DLE LL+ME K
Sbjct: 625 ELAFSISYDRGEEEAYLNFIAPSKREFYLWTDGLSALLGSPMGSEQTRLDLEQLLTMETK 684

Query: 65  IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           +RLL+ E V IP  PP VP  P N++F +
Sbjct: 685 LRLLELENVPIPERPPPVPPPPTNFNFCY 713

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Homo sapiens (taxid: 9606)

>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 6   DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
           ++AFS++ D  E  + L+F+AP +  F  WTDG++ALLG+ M S++   DLE LL+ME K
Sbjct: 625 ELAFSISYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSEQTRLDLEQLLTMETK 684

Query: 65  IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           +RLL+ E V IP HPP VP  P N++F +
Sbjct: 685 LRLLELENVPIPEHPPPVPPPPTNFNFCY 713

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Rattus norvegicus (taxid: 10116)

>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 6   DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
           ++AFS++ D  E  + L+F+AP +  F  WTDG++ALLG+ M S+    DLE LL+ME K
Sbjct: 625 ELAFSISYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSELTRLDLEQLLTMETK 684

Query: 65  IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           +RLL+ E V IP  PP VP  P N++F +
Sbjct: 685 LRLLELENVPIPEQPPPVPPPPTNFNFCY 713

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

Mus musculus (taxid: 10090)

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 20  SLDFVAPD-EEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHH 78
           ++D ++ + ++V ++W D I  L G ++ S+E  +D  +LLS+   ++LLD +G++IP  
Sbjct: 903 TIDLISSNRDDVSNFW-DSIKLLSGQEIKSQEGLDDYHSLLSINTSVKLLDLDGIDIPKE 961

Query: 79  PPEVPEEPRNYDF 91
            P++P  P N+DF
Sbjct: 962 TPQIPILPDNFDF 974

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
340728347	726	PREDICTED: engulfment and cell motility	0.935	0.119	0.747	4e-33
350403028	726	PREDICTED: engulfment and cell motility	0.935	0.119	0.747	4e-33
322778826	753	hypothetical protein SINV_08273 [Solenop	0.935	0.115	0.781	7e-30
383850439	765	PREDICTED: engulfment and cell motility	0.935	0.113	0.770	1e-29
332022366	719	Engulfment and cell motility protein 1 [	0.935	0.121	0.770	4e-29
307172364	719	Engulfment and cell motility protein 1 [	0.935	0.121	0.781	6e-29
380011794	726	PREDICTED: engulfment and cell motility	0.935	0.119	0.770	7e-28
328787907	726	PREDICTED: engulfment and cell motility	0.935	0.119	0.770	7e-28
307191605	719	Engulfment and cell motility protein 1 [	0.935	0.121	0.758	8e-28
321460450	736	hypothetical protein DAPPUDRAFT_308856 [	0.892	0.112	0.698	3e-27

>gi|340728347|ref|XP_003402487.1| PREDICTED: engulfment and cell motility protein 1-like [Bombus terrestris]

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 79/87 (90%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLG++MTSKEA+NDLETLLSM+IK+R
Sbjct: 637 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGSRMTSKEAENDLETLLSMDIKLR 696

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLD EG++IP  PP +P+ P NYDF +
Sbjct: 697 LLDTEGIDIPQDPPAIPDPPSNYDFCY 723

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403028|ref|XP_003486680.1| PREDICTED: engulfment and cell motility protein 1-like [Bombus impatiens]

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 79/87 (90%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLG++MTSKEA+NDLETLLSM+IK+R
Sbjct: 637 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGSRMTSKEAENDLETLLSMDIKLR 696

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLD EG++IP  PP +P+ P NYDF +
Sbjct: 697 LLDTEGIDIPQDPPAIPDPPSNYDFCY 723

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778826|gb|EFZ09242.1| hypothetical protein SINV_08273 [Solenopsis invicta]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 80/87 (91%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLGN+MTSKEA+NDLETLLSM+IK+R
Sbjct: 653 LAFSLALDSVEVSSLDFVAPDEQVFDYWTDGINALLGNRMTSKEAENDLETLLSMDIKLR 712

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLDAEG++IP  PP +PE P NYDF +
Sbjct: 713 LLDAEGIDIPQDPPAIPEPPPNYDFCY 739

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850439|ref|XP_003700803.1| PREDICTED: engulfment and cell motility protein 1 [Megachile rotundata]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/87 (77%), Positives = 80/87 (91%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLGN+MTSKEA+NDLETLLSM+IK+R
Sbjct: 676 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGNRMTSKEAENDLETLLSMDIKLR 735

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLDAEG++IP  PP +P+ P NYDF +
Sbjct: 736 LLDAEGLDIPQEPPAIPDPPPNYDFCY 762

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022366|gb|EGI62678.1| Engulfment and cell motility protein 1 [Acromyrmex echinatior]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/87 (77%), Positives = 80/87 (91%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGI+ALLGN+MTSKEA+NDLETLLSM+IK+R
Sbjct: 630 LAFSLALDSVEVSSLDFVAPDEQVFDYWTDGISALLGNRMTSKEAENDLETLLSMDIKLR 689

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLDAEG++IP  PP +PE P NYDF +
Sbjct: 690 LLDAEGIDIPQDPPAIPEPPPNYDFCY 716

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172364|gb|EFN63835.1| Engulfment and cell motility protein 1 [Camponotus floridanus]

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLGN+MTSKEA+ DLETLLSM+IK+R
Sbjct: 630 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGNRMTSKEAEKDLETLLSMDIKLR 689

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLDAEG++IP  PP VPE P NYDF +
Sbjct: 690 LLDAEGIDIPQDPPAVPEPPPNYDFCY 716

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011794|ref|XP_003689979.1| PREDICTED: engulfment and cell motility protein 1-like [Apis florea]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/87 (77%), Positives = 79/87 (90%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLGN+MTSKEA+NDLETLLSM+IK+R
Sbjct: 637 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGNRMTSKEAENDLETLLSMDIKLR 696

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLD EG++IP  PP VP+ P NYDF +
Sbjct: 697 LLDTEGIDIPQDPPAVPDPPPNYDFCY 723

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787907|ref|XP_395913.3| PREDICTED: engulfment and cell motility protein 1 [Apis mellifera]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/87 (77%), Positives = 79/87 (90%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLGN+MTSKEA+NDLETLLSM+IK+R
Sbjct: 637 LAFSLILDSVEVSSLDFVAPDEQVFDYWTDGINALLGNRMTSKEAENDLETLLSMDIKLR 696

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLD EG++IP  PP VP+ P NYDF +
Sbjct: 697 LLDTEGIDIPQDPPAVPDPPPNYDFCY 723

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191605|gb|EFN75102.1| Engulfment and cell motility protein 1 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/87 (75%), Positives = 76/87 (87%)

Query: 7   IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
           +AFSL LDSVE++SLDFVAPDE+VFDYWTDGINALLG  M SKEA NDLETLLSM+IK+R
Sbjct: 630 LAFSLALDSVEMSSLDFVAPDEQVFDYWTDGINALLGTAMISKEAQNDLETLLSMDIKLR 689

Query: 67  LLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           LLDAEG++IP  PP +PE P NYDF +
Sbjct: 690 LLDAEGIDIPQDPPAIPEPPPNYDFCY 716

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460450|gb|EFX71492.1| hypothetical protein DAPPUDRAFT_308856 [Daphnia pulex]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 67/83 (80%)

Query: 9   FSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLL 68
           FSL LDS ++ SLDFVAPD++ FDYW DGINALLGNKMTSKEA  DLE LLSM  K+RLL
Sbjct: 649 FSLMLDSHDVGSLDFVAPDQQTFDYWVDGINALLGNKMTSKEAMADLEFLLSMNTKLRLL 708

Query: 69  DAEGVEIPHHPPEVPEEPRNYDF 91
           D EG+++P  PP +P EP NYDF
Sbjct: 709 DVEGLDLPEEPPAIPREPTNYDF 731

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
FB|FBgn0032409	724	Ced-12 "Ced-12" [Drosophila me	0.946	0.121	0.522	1.1e-18
UNIPROTKB|F1SIM4	247	ELMO1 "Uncharacterized protein	0.935	0.352	0.449	1.3e-13
UNIPROTKB|Q5EAA6	247	ELMO1 "Uncharacterized protein	0.935	0.352	0.449	2.1e-13
UNIPROTKB|E2R7G8	727	ELMO1 "Uncharacterized protein	0.935	0.119	0.449	1.9e-12
UNIPROTKB|F1MQH0	727	ELMO1 "Uncharacterized protein	0.935	0.119	0.449	3.1e-12
UNIPROTKB|Q92556	727	ELMO1 "Engulfment and cell mot	0.935	0.119	0.449	3.1e-12
MGI|MGI:2153044	727	Elmo1 "engulfment and cell mot	0.935	0.119	0.449	3.1e-12
RGD|1308182	727	Elmo1 "engulfment and cell mot	0.935	0.119	0.449	3.1e-12
UNIPROTKB|E1BXG8	728	ELMO1 "Uncharacterized protein	0.935	0.119	0.449	3.1e-12
UNIPROTKB|F1NFA5	744	ELMO1 "Uncharacterized protein	0.935	0.116	0.449	3.2e-12

FB|FBgn0032409 Ced-12 "Ced-12" [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/88 (52%), Positives = 60/88 (68%)

Query:     6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
             ++AFS+T +++E ++LDFVAPDE +F+YWTDGINALLG  M SK+ + D +TLLSMEIK+
Sbjct:   635 NLAFSITFENMEHSTLDFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKL 694

Query:    66 RLLDAXXXXXXXXXXXXXXXXRNYDFNF 93
             RLLD                  NYDF F
Sbjct:   695 RLLDTEGVDISKDPPPIPEDPENYDFCF 722

GO:0016477 "cell migration" evidence=IGI

GO:0007015 "actin filament organization" evidence=IMP

GO:0006909 "phagocytosis" evidence=IEA

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0032863 "activation of Rac GTPase activity" evidence=IGI

GO:0007520 "myoblast fusion" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007417 "central nervous system development" evidence=IMP

UNIPROTKB|F1SIM4 ELMO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   156 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTQNDLDTLLSME 213

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   214 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 242

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

GO:0006928 "cellular component movement" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q5EAA6 ELMO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   156 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 213

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   214 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 242

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

GO:0006928 "cellular component movement" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2R7G8 ELMO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 40/89 (44%), Positives = 53/89 (59%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S+   NDL+TLLSME
Sbjct:   636 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSELTRNDLDTLLSME 693

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   694 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 722

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

GO:0006928 "cellular component movement" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1MQH0 ELMO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   636 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 693

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   694 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 722

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

GO:0006928 "cellular component movement" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q92556 ELMO1 "Engulfment and cell motility protein 1" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   636 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 693

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   694 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 722

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0006911 "phagocytosis, engulfment" evidence=IGI

GO:0006928 "cellular component movement" evidence=IGI

GO:0016601 "Rac protein signal transduction" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006915 "apoptotic process" evidence=NAS

GO:0017124 "SH3 domain binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2153044 Elmo1 "engulfment and cell motility 1" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   636 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 693

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   694 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 722

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0006909 "phagocytosis" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006928 "cellular component movement" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=ISO;ISS

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0030029 "actin filament-based process" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=ISO;ISS

RGD|1308182 Elmo1 "engulfment and cell motility 1" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   636 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 693

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   694 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 722

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006909 "phagocytosis" evidence=IEA;ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0006928 "cellular component movement" evidence=ISO

GO:0016601 "Rac protein signal transduction" evidence=ISO

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0030029 "actin filament-based process" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=ISO

UNIPROTKB|E1BXG8 ELMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   637 EVLELAFSILYDSSG--QLNFIAPDKHEYCVWTDGLNALLGKDMLSDLTRNDLDTLLSME 694

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   695 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 723

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

UNIPROTKB|F1NFA5 ELMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:     3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
             ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct:   653 EVLELAFSILYDSSG--QLNFIAPDKHEYCVWTDGLNALLGKDMLSDLTRNDLDTLLSME 710

Query:    63 IKIRLLDAXXXXXXXXXXXXXXXXRNYDF 91
             IK+RLLD                  NYDF
Sbjct:   711 IKLRLLDLENIQIPDAPPPIPKEPSNYDF 739

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006928 "cellular component movement" evidence=IEA

GO:0016601 "Rac protein signal transduction" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92556	ELMO1_HUMAN	No assigned EC number	0.5333	0.9462	0.1210	yes	N/A
Q8BPU7	ELMO1_MOUSE	No assigned EC number	0.5333	0.9462	0.1210	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
cd13359	126	cd13359, PH_ELMO1_CED-12, Engulfment and cell moti	5e-15
cd01248	108	cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfm	6e-04
cd13365	115	cd13365, PH_PLC_plant-like, Plant-like Phospholipa	0.001

>gnl|CDD|241513 cd13359, PH_ELMO1_CED-12, Engulfment and cell motility protein 1 pleckstrin homology (PH) domain

 Score = 64.6 bits (158), Expect = 5e-15
 Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 2/39 (5%)

Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN 44
            +AFS+  D  E  SL+FVAP++ VFD WTDG+NALLG 
Sbjct: 90  SLAFSILYDPDE--SLNFVAPNKTVFDIWTDGLNALLGK 126

DOCK2 (Dedicator of cytokinesis 2), a hematopoietic cell-specific, atypical GEF, controls lymphocyte migration through Rac activation. A DOCK2-ELMO1 complex s necessary for DOCK2-mediated Rac signaling. DOCK2 contains a SH3 domain at its N-terminus, followed by a lipid binding DHR1 domain, and a Rac-binding DHR2 domain at its C-terminus. ELMO1, a mammalian homolog of C. elegans CED-12, contains the N-terminal RhoG-binding region, the ELMO domain, the PH domain, and the C-terminal sequence with three PxxP motifs. The C-terminal region of ELMO1, including the Pro-rich sequence, binds the SH3-containing region of DOCK2 forming a intermolecular five-helix bundle along with the PH domain of ELMO1. Autoinhibition of ELMO1 and DOCK2 is accomplished by the interactions of the EID and EAD domains and SH3 and DHR2 domains, respectively. The interaction of DOCK2 and ELMO1 mutually relieve their autoinhibition and results in the activation of Rac1. The PH domain of ELMO1 does not bind phosphoinositides due to the absence of key binding residues. It more closely resembles the FERM domain rather than other PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 126

>gnl|CDD|241279 cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfment and cell motility protein 1 pleckstrin homology domain

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 20  SLDFVAPDEEVFDYWTDGINALL 42
           +LD VAP E+  + W +G+ ALL
Sbjct: 86  TLDLVAPSEDEANLWVEGLRALL 108

The C-terminal region of ELMO1, the PH domain and Pro-rich sequences, binds the SH3-containing region of DOCK2 forming a intermolecular five-helix bundle allowing for DOCK mediated Rac1 activation. ELMO1, a mammalian homolog of C. elegans CED-12, contains an N-terminal RhoG-binding region, a ELMO domain, a PH domain, and a C-terminal sequence with three PxxP motifs. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). All PLCs, except for PLCzeta, have a PH domain which is for most part N-terminally located, though lipid binding specificity is not conserved between them. In addition PLC gamma contains a split PH domain within its catalytic domain that is separated by 2 SH2 domains and a single SH3 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 9   FSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42
           FS+     E  SLD    D + FD W  G+ ALL
Sbjct: 82  FSIIYADGE-RSLDLTCKDRQEFDTWFTGLRALL 114

PLC-gamma (PLCgamma) was the second class of PLC discovered. PLC-gamma consists of an N-terminal PH domain, a EF hand domain, a catalytic domain split into X and Y halves internal to which is a PH domain split by two SH2 domains and a single SH3 domain, and a C-terminal C2 domain. PLCs (EC 3.1.4.3) play a role in the initiation of cellular activation, proliferation, differentiation and apoptosis. They are central to inositol lipid signalling pathways, facilitating intracellular Ca2+ release and protein kinase C (PKC) activation. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C proteins which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). This cd contains PLC members from fungi and plants. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG2999|consensus	713		100.0
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	98.11
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	96.72
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	93.45
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	92.67
KOG0169|consensus	746		90.02
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	88.69
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	85.18
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	82.55
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	81.62
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	80.58

>KOG2999|consensus

Probab=100.00  E-value=4e-37  Score=258.86  Aligned_cols=93  Identities=52%  Similarity=0.908  Sum_probs=90.6

Q ss_pred             CCCcCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHchhhhhhhcccCCCCCCCCCC
Q psy313            1 MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPP   80 (93)
Q Consensus         1 ~~~~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m~S~et~~dv~~Ll~melKlrLLdlegv~IP~~~p   80 (93)
                      +|++.+|||||+|+.++...|||+|||+++||+|+||||+|+|++|.|++|++|+++||+||+|+||||++||+||+.||
T Consensus       618 nk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~m~s~~T~~dldtlLsMEiKlRLLdleni~iPe~pP  697 (713)
T KOG2999|consen  618 NKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSDMVSELTRADLDTLLSMEIKLRLLDLENIQIPEAPP  697 (713)
T ss_pred             hHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCChhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Confidence            57889999999999888788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccC
Q psy313           81 EVPEEPRNYDFNF   93 (93)
Q Consensus        81 ~IPp~P~~~dF~~   93 (93)
                      ||||+|+||||||
T Consensus       698 pIP~~P~nydf~y  710 (713)
T KOG2999|consen  698 PIPPEPSNYDFVY  710 (713)
T ss_pred             CCCcCCCCcceee
Confidence            9999999999998

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=98.11  E-value=4.6e-06  Score=56.27  Aligned_cols=39  Identities=31%  Similarity=0.596  Sum_probs=33.3

Q ss_pred             CcCcceeeEEecCCC-ceeEEEecCChhHHHHHHHHHHHh
Q psy313            3 KIPDIAFSLTLDSVE-ITSLDFVAPDEEVFDYWTDGINAL   41 (93)
Q Consensus         3 ~~~~laFSl~~~~~e-~~~l~~va~~~~~~~~W~DGln~L   41 (93)
                      +..+..|||+|.++- ...|+|||+|++++..|++||+.|
T Consensus        76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L  115 (115)
T cd01248          76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL  115 (115)
T ss_pred             CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence            356789999999861 235999999999999999999976

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=96.72  E-value=0.003  Score=43.52  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      ..+||....++. .|+|+|++++++..|..||+.|+-
T Consensus        87 ~~~si~i~t~~R-~L~l~a~s~~~~~~W~~aL~~L~~  122 (123)
T PF12814_consen   87 HNKSIIIVTPDR-SLDLTAPSRERHEIWFNALRYLLQ  122 (123)
T ss_pred             cceEEEEEcCCe-EEEEEeCCHHHHHHHHHHHHHHhh
Confidence            567777777654 599999999999999999999974

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd00821 PH Pleckstrin homology (PH) domain

Probab=93.45  E-value=0.16  Score=29.63  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      +.+|.|...++  ..+.|.|+++.+...|.+.|+.
T Consensus        63 ~~~f~i~~~~~--~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          63 KNCFEIRTPDG--RSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CcEEEEecCCC--cEEEEEeCCHHHHHHHHHHHhc
Confidence            57899988875  3499999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=92.67  E-value=0.37  Score=28.29  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      ....|.|.....  ..+.|.|+++++...|.+.|+...
T Consensus        66 ~~~~f~l~~~~~--~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       66 KPHCFEIKTADR--RSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CceEEEEEecCC--ceEEEEcCCHHHHHHHHHHHHHhh
Confidence            467788877765  349999999999999999998764

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>KOG0169|consensus

Probab=90.02  E-value=0.67  Score=41.42  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=31.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      .-.|||++. +....|+++|++++....|++||..|+
T Consensus        87 ~~~fsi~~~-~~~e~ldl~a~s~~~a~~wV~gl~~l~  122 (746)
T KOG0169|consen   87 DRCFSIIFK-DRYESLDLIANSKEDANIWVSGLRKLI  122 (746)
T ss_pred             ceeEEEEec-cccccccccCCCHHHHHHHhhhHHHHH
Confidence            457999993 345579999999999999999999998

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=88.69  E-value=1.3  Score=26.61  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             cCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            4 IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         4 ~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      -.+..|.|....+  ..+.|.|.|+++...|...|+...
T Consensus        67 ~~~~~f~i~~~~~--~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   67 KRKNCFEITTPNG--KSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SSSSEEEEEETTS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4567888988886  359999999999999999998754

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=85.18  E-value=2.2  Score=25.99  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      +..|+|....+  ..+.|.|.++++...|...|+.
T Consensus        58 ~~~F~i~~~~~--~~~~~~a~s~~e~~~Wi~al~~   90 (91)
T cd01246          58 DKCFTIDTGGD--KTLHLRANSEEERQRWVDALEL   90 (91)
T ss_pred             CcEEEEEcCCC--CEEEEECCCHHHHHHHHHHHHh
Confidence            46788876543  3599999999999999998863

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=82.55  E-value=2.8  Score=28.36  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      +..|.|...++.  -.-|-|.|+++...|.+.||.
T Consensus        84 ~~VFrL~~~dg~--e~Lfqa~~~~~m~~Wi~~IN~  116 (119)
T PF15410_consen   84 KNVFRLRTADGS--EYLFQASDEEEMNEWIDAINY  116 (119)
T ss_dssp             SSEEEEE-TTS---EEEEE-SSHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCC--EEEEECCCHHHHHHHHHHHhh
Confidence            457888877764  388999999999999999996

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=81.62  E-value=4.6  Score=27.14  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +.+|+|.........+.+-|+++++-..|+.-|+.++
T Consensus        59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            6899997774333359999999999999999998764

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=80.58  E-value=4  Score=26.62  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +..|+|...  + ..+.|.|.++.+...|.+.|+.+.
T Consensus        65 ~~~F~I~t~--~-rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          65 PNTFAVCTK--H-RGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             CcEEEEECC--C-CEEEEEcCCHHHHHHHHHHhhhhh
Confidence            457888443  2 249999999999999999998764

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3a98_B	203	Crystal Structure Of The Complex Of The Interacting		3e-12
2vsz_A	149	Crystal Structure Of The Elmo1 Ph Domain Length = 1		6e-05

>pdb|3A98|B Chain B, Crystal Structure Of The Complex Of The Interacting Regions Of Dock2 And Elmo1 Length = 203

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
           ++AFS+  DS     L+F+APD+  +  WTDG+NALLG    S    NDL+TLLS EIK+
Sbjct: 115 ELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDXXSDLTRNDLDTLLSXEIKL 172
Query: 66  RLLDAXXXXXXXXXXXXXXXXRNYDFNF 93
           RLLD                  NYDF +
Sbjct: 173 RLLDLENIQIPDAPPPIPKEPSNYDFVY 200

>pdb|2VSZ|A Chain A, Crystal Structure Of The Elmo1 Ph Domain Length = 149

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 6   DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN 44
           ++AFS+  DS     L+F+APD+  +  WTDG+NALLG 
Sbjct: 113 ELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGK 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	1e-29
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	4e-08
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	9e-04

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A Length = 203

 Score =  103 bits (258), Expect = 1e-29
 Identities = 48/91 (52%), Positives = 65/91 (71%), Gaps = 2/91 (2%)

Query: 3   KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSME 62
           ++ ++AFS+  DS     L+F+APD+  +  WTDG+NALLG  M S    NDL+TLLSME
Sbjct: 112 EVLELAFSILYDSNC--QLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSME 169

Query: 63  IKIRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
           IK+RLLD E ++IP  PP +P+EP NYDF +
Sbjct: 170 IKLRLLDLENIQIPDAPPPIPKEPSNYDFVY 200

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Length = 131

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 5   PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN--KMTSKE 50
            D  FS+     +  +LD +AP      +W  G+  ++ +   M  ++
Sbjct: 84  EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHHSGSMDQRQ 130

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885

 Score = 35.8 bits (81), Expect = 9e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 14  DSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTS 48
           D V    L+F+A  ++    W++ +  L  N +  
Sbjct: 110 DPVNTVFLNFMAVQDDTAKVWSEELFKLAMNILAQ 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	100.0
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.85
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.56
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	96.99
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	96.98
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	95.05
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	93.36
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	88.22
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	87.73
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	87.39
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	87.13
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	87.03
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	86.07
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	85.65
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	85.22
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	84.44
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	84.07
2d9v_A	130	Pleckstrin homology domain-containing protein fami	83.42
3cxb_B	112	Pleckstrin homology domain-containing family M mem	82.96
2d9y_A	117	Pleckstrin homology domain-containing protein fami	82.63
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	81.81
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	81.47
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	80.41

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=100.00  E-value=9.2e-39  Score=237.48  Aligned_cols=89  Identities=54%  Similarity=0.971  Sum_probs=85.6

Q ss_pred             CcCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHchhhhhhhcccCCCCCCCCCCCC
Q psy313            3 KIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEV   82 (93)
Q Consensus         3 ~~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m~S~et~~dv~~Ll~melKlrLLdlegv~IP~~~p~I   82 (93)
                      ++.++||||+++++  .+|+|+|+|++++++|+||||+|+|++|+|+||+++|++|++||+||||||||||+||++||||
T Consensus       112 ~~~~laFSii~~~~--~~L~fvA~s~~~~~~W~DGL~~Llg~~~~S~et~~~v~~Ll~m~lklrLLdle~v~ip~~~ppi  189 (203)
T 3a98_B          112 EVLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPI  189 (203)
T ss_dssp             TTGGGEEEEEETTT--EEEEEECSSHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHTGGGTTCCCCSSCCCC
T ss_pred             cccceEEEEecCCC--ceEEEecCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcccCCcCCCCCCCC
Confidence            46779999999876  5699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccC
Q psy313           83 PEEPRNYDFNF   93 (93)
Q Consensus        83 Pp~P~~~dF~~   93 (93)
                      ||+|+||||||
T Consensus       190 p~~P~~~dF~~  200 (203)
T 3a98_B          190 PKEPSNYDFVY  200 (203)
T ss_dssp             CCCCSCCCCSS
T ss_pred             CcCCCCcceee
Confidence            99999999998

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=74.20  Aligned_cols=32  Identities=50%  Similarity=0.893  Sum_probs=30.0

Q ss_pred             hhhhhhcccCCCCCCCCCCCCCCCCCCCCccC
Q psy313           62 EIKIRLLDAEGVEIPHHPPEVPEEPRNYDFNF   93 (93)
Q Consensus        62 elKlrLLdlegv~IP~~~p~IPp~P~~~dF~~   93 (93)
                      +-++||||+||++||+.+|++|++|.||||||
T Consensus         4 ~~~~~~~~~~~~~iP~~pPP~pp~Psn~~F~~   35 (119)
T 2rqr_A            4 GSSGRLLDLENIQIPDAPPPIPKEPSNYDFSG   35 (119)
T ss_dssp             CCCCCCCSSCCCCCCSSCCCCCCCCSSCCCCS
T ss_pred             cccceeecccCCCCCCCCCCCCCCCCcccccc
Confidence            45899999999999999999999999999986

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.56  E-value=8.3e-08  Score=65.13  Aligned_cols=39  Identities=23%  Similarity=0.559  Sum_probs=34.5

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCC
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN   44 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~   44 (93)
                      .+.+|||+|.... ..|++||+|+.+++.|++||+.|+++
T Consensus        84 ~~~~FsIiy~~~~-k~LdlvA~s~~e~~~Wv~gL~~L~~~  122 (131)
T 1mai_A           84 EDRCFSIVFKDQR-NTLDLIAPSPADAQHWVQGLRKIIHH  122 (131)
T ss_dssp             GGGEEEEEESSSC-CCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             ccceEEEEECCCC-ceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            5789999999863 46999999999999999999999984

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=96.99  E-value=0.00055  Score=58.53  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=37.0

Q ss_pred             cCcceeeEEecCCCc--eeEEEecCChhHHHHHHHHHHHhhCCCC
Q psy313            4 IPDIAFSLTLDSVEI--TSLDFVAPDEEVFDYWTDGINALLGNKM   46 (93)
Q Consensus         4 ~~~laFSl~~~~~e~--~~l~~va~~~~~~~~W~DGln~Llg~~m   46 (93)
                      ..+.+|||+|..+..  ..|+|||+++.++..|++||+.|+++.+
T Consensus        94 ~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~  138 (799)
T 2zkm_X           94 FLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL  138 (799)
T ss_dssp             GGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred             cccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            457899999998653  3699999999999999999999998654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=96.98  E-value=0.00045  Score=60.13  Aligned_cols=42  Identities=14%  Similarity=0.346  Sum_probs=35.5

Q ss_pred             CcCcceeeEEecCCCc--eeEEEecCChhHHHHHHHHHHHhhCC
Q psy313            3 KIPDIAFSLTLDSVEI--TSLDFVAPDEEVFDYWTDGINALLGN   44 (93)
Q Consensus         3 ~~~~laFSl~~~~~e~--~~l~~va~~~~~~~~W~DGln~Llg~   44 (93)
                      +..+.+|||+|..+..  ..|+|||+++.++..|++||+.|+++
T Consensus        97 ~~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~  140 (885)
T 3ohm_B           97 RLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMN  140 (885)
T ss_dssp             --CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cccccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhh
Confidence            3457899999997643  37999999999999999999999985

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=95.05  E-value=0.028  Score=48.54  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             cceeeEEecCCCce--eEEEecCChhHHHHHHHHHHHhhCC
Q psy313            6 DIAFSLTLDSVEIT--SLDFVAPDEEVFDYWTDGINALLGN   44 (93)
Q Consensus         6 ~laFSl~~~~~e~~--~l~~va~~~~~~~~W~DGln~Llg~   44 (93)
                      +-.|+|+|..+-..  .++|||+++.++..|+.||+.|..+
T Consensus       103 ~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~  143 (816)
T 3qr0_A          103 DKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYN  143 (816)
T ss_dssp             HHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTC
T ss_pred             ccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence            56899999875322  5699999999999999999999864

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.36  E-value=0.35  Score=33.83  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=41.4

Q ss_pred             ceeeEEecCCCc-eeEEEecCChhHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHc
Q psy313            7 IAFSLTLDSVEI-TSLDFVAPDEEVFDYWTDGINALL-GNKMTSKEADNDLETLLS   60 (93)
Q Consensus         7 laFSl~~~~~e~-~~l~~va~~~~~~~~W~DGln~Ll-g~~m~S~et~~dv~~Ll~   60 (93)
                      .+|.+...+.|. ...-+.|.++++++.|+..++.-. |+.|+....+.+|+.+++
T Consensus        75 f~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAskgktma~~sy~~ev~~i~~  130 (137)
T 2ys3_A           75 FCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTSEVQAILA  130 (137)
T ss_dssp             EEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHHHTSCCTTSTHHHHHHHHHHH
T ss_pred             eEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHH
Confidence            344455444322 358888999999999999998766 569999999999998754

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=88.22  E-value=0.66  Score=28.63  Aligned_cols=39  Identities=13%  Similarity=0.092  Sum_probs=32.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKM   46 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m   46 (93)
                      +..|.|....  ...+.|.|.++++...|++.|+...|...
T Consensus        66 ~~~F~i~~~~--~r~~~l~A~s~~e~~~Wi~al~~~~~~~~  104 (107)
T 2cof_A           66 LYSFRILHKG--EELAKLEAKSSEEMGHWLGLLLSESGSGP  104 (107)
T ss_dssp             SCEEEEEETT--EEEEEEECSSHHHHHHHHHHHHHHSSCSS
T ss_pred             CeEEEEEeCC--CeEEEEEcCCHHHHHHHHHHHHHHHcCCC
Confidence            4678888753  24589999999999999999999888654

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=87.73  E-value=1.1  Score=26.73  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +.+|.|....+  ..+.|.|.++++...|.+.|+..+
T Consensus        70 ~~~F~i~~~~~--r~~~l~a~s~~e~~~Wi~ai~~~i  104 (108)
T 1u5d_A           70 ESCFELTSQDR--RTYEFTATSPAEARDWVDQISFLL  104 (108)
T ss_dssp             GGEEEEECSSS--CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCC--cEEEEECCCHHHHHHHHHHHHHHH
Confidence            46788876542  348899999999999999998654

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=87.39  E-value=1.4  Score=26.88  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             cceeeEEecCC-----CceeEEEecCChhHHHHHHHHHHHhhCCCC
Q psy313            6 DIAFSLTLDSV-----EITSLDFVAPDEEVFDYWTDGINALLGNKM   46 (93)
Q Consensus         6 ~laFSl~~~~~-----e~~~l~~va~~~~~~~~W~DGln~Llg~~m   46 (93)
                      +..|.|.....     ....+.|.|.++++...|.+.|+......-
T Consensus        70 ~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~  115 (118)
T 1v89_A           70 KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGP  115 (118)
T ss_dssp             CCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCS
T ss_pred             cceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCC
Confidence            56888887421     123588999999999999999998876543

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=87.13  E-value=1.1  Score=28.13  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=31.5

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKM   46 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m   46 (93)
                      +..|.|.....  ..+.|.|.++++...|.+.|+....+.+
T Consensus        89 ~~~F~I~~~~~--r~~~l~a~s~~e~~~Wi~al~~~~~~~~  127 (129)
T 1x1g_A           89 GNLFKVITKDD--THYYIQASSKAERAEWIEAIKKLTSGPS  127 (129)
T ss_dssp             SSCEEECCTTC--CCEEECCSSHHHHHHHHHHHHHHSSSSC
T ss_pred             CceEEEEcCCC--CEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence            56788876543  3488999999999999999999887654

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=87.03  E-value=1.8  Score=31.27  Aligned_cols=53  Identities=13%  Similarity=0.298  Sum_probs=40.4

Q ss_pred             eeeEEecCCC-ceeEEEecCChhHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHc
Q psy313            8 AFSLTLDSVE-ITSLDFVAPDEEVFDYWTDGINALL-GNKMTSKEADNDLETLLS   60 (93)
Q Consensus         8 aFSl~~~~~e-~~~l~~va~~~~~~~~W~DGln~Ll-g~~m~S~et~~dv~~Ll~   60 (93)
                      +|.|...+.+ ..-+-+-+.++.+++.|+-+.++-. |+.|+...++.+|+.+++
T Consensus        93 ~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLAskGkTmADsSy~sEv~~il~  147 (165)
T 4bbk_A           93 GIKLLIPVADGMNEVYLRCDHEDQYARWMAACILASKGKTMADSSYQPEVISILS  147 (165)
T ss_dssp             EEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred             eEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHH
Confidence            3444444332 2246688999999999999999876 689999999999998765

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=86.07  E-value=1.7  Score=26.53  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCCC
Q psy313            7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMT   47 (93)
Q Consensus         7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m~   47 (93)
                      ..|.|....   ..+.|.|.++++...|.+.|+..+.+.-.
T Consensus        78 ~~F~i~~~~---r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  115 (117)
T 1v5u_A           78 AFFDVKTTR---RVYNFCAQDVPSAQQWVDRIQSCLSSGPS  115 (117)
T ss_dssp             TCEEEEESS---CEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred             eEEEEECCC---ceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence            678885432   34889999999999999999988776543

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=85.65  E-value=1.4  Score=26.52  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=26.3

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      +..|.|....+  ..+-|.|.|+.+...|.+.|+.
T Consensus        73 ~~~F~i~~~~~--~~~~~~A~s~~e~~~Wi~ai~~  105 (106)
T 1btn_A           73 KHVFKLRLSDG--NEYLFQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             SSEEEEECTTS--CEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEecCC--CEEEEECCCHHHHHHHHHHHhc
Confidence            45788876543  3488999999999999998874

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=85.22  E-value=1.2  Score=28.73  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +.+|.|.........+.|.|.++++...|...|+...
T Consensus        82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~  118 (124)
T 2w2x_D           82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT  118 (124)
T ss_dssp             SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHH
Confidence            4789998765433458999999999999999998654

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=84.44  E-value=2  Score=26.25  Aligned_cols=35  Identities=9%  Similarity=0.125  Sum_probs=27.9

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +..|.|....+  ..+.|.|.++++...|.+.|+...
T Consensus        76 ~~~F~i~~~~~--r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           76 DCMLQIVCRDG--KTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             GGEEEEEETTS--CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCC--cEEEEEeCCHHHHHHHHHHHHHHh
Confidence            46899876543  348999999999999999998643

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=84.07  E-value=2.1  Score=25.78  Aligned_cols=36  Identities=11%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      .+.+|.|.....  ..+.|.|.++++...|.+.|+...
T Consensus        73 ~~~~F~i~~~~~--~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           73 EENLFEIITADE--VHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CCSEEEEECTTC--CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCC--CEEEEEcCCHHHHHHHHHHHHHHh
Confidence            456788876643  348899999999999999998653

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.42  E-value=3.1  Score=26.64  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNK   45 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~   45 (93)
                      +..|.|....+  ..+.|.|.++++...|...|+......
T Consensus        79 ~~~F~I~~~~~--r~~~l~A~s~~e~~~Wi~al~~a~~~~  116 (130)
T 2d9v_A           79 DGLLTVNLREG--SRLHLCAETRDDAIAWKTALMEANSTP  116 (130)
T ss_dssp             TTEEEEEETTS--CEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CcEEEEEeCCC--CEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence            46788887543  348999999999999999999776543

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=82.96  E-value=3.2  Score=26.11  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN   44 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~   44 (93)
                      +.+|.|....+.  .+-|.|.|+++...|...|+....+
T Consensus        66 ~~~F~l~~~~~~--~y~f~A~s~ee~~~Wi~ai~~~~~~  102 (112)
T 3cxb_B           66 PHAFQVILSDRP--CLELSAESEAEMAEWMQHLCQAVSK  102 (112)
T ss_dssp             TTEEEEEETTSC--CEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEcCCCC--EEEEEcCCHHHHHHHHHHHHHHhhc
Confidence            468999866542  3789999999999999999876654

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.63  E-value=3.2  Score=25.23  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=28.9

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +.+|.|.....  ..+.|.|.++++...|.+.|+....
T Consensus        74 ~~~F~i~~~~~--r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           74 KHTFKAEHAGV--RTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             SSEEEEECSSS--CEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             ccEEEEEcCCC--cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            45788865443  3489999999999999999998775

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=81.81  E-value=4  Score=24.79  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +..|.|....  ...+.|.|.++.+...|.+.|+...-
T Consensus        68 ~~~F~i~~~~--~~~~~~~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           68 SKVFQLLHKG--MVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SSEEEEEETT--EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEeCC--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            4688887643  24589999999999999999987654

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=81.47  E-value=2.4  Score=25.92  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +..|.|....+  ..+.|.|.++.+...|...|+...+
T Consensus        66 ~~~F~i~~~~~--r~~~l~a~s~~e~~~Wi~ai~~~~~  101 (113)
T 1pls_A           66 MFVFKITTTKQ--QDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             SSEEEEEETTT--EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcCCC--CEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45788876543  4588999999999999999988764

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=80.41  E-value=2.9  Score=27.08  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +..|.|....+  ..+.|.|.++.+...|+..|+..+.
T Consensus        84 ~~~F~I~~~~~--r~~~l~a~s~~e~~~Wi~al~~~i~  119 (148)
T 1u5f_A           84 DCCFEICAPDK--RIYQFTAASPKDAEEWVQQLKFILQ  119 (148)
T ss_dssp             GGEEEEECTTS--CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ccEEEEECCCC--cEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46788876542  3588999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1maia_	119	b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus	5e-06
d2zkmx3	131	b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human	8e-06

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (92), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 5   PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42
            D  FS+     +  +LD +AP      +W  G+  ++
Sbjct: 82  EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKII 118

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 131

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 8e-06
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 14  DSVEITSLDFVAPDEEVFDYWTDGINALLGNKMT 47
           D V++T  +FV+  E V   W + + AL+ + +T
Sbjct: 96  DMVDLTFHNFVSYKENVGKAWAEDVLALVKHPLT 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.2
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	97.84
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	92.17
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	88.98
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	86.91
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	86.85
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	86.81
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	84.85
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	84.24
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	83.85
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	83.27
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	82.94
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	82.54
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	82.0
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	81.9
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	80.92
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	80.73
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	80.41

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=9.4e-07  Score=56.31  Aligned_cols=37  Identities=24%  Similarity=0.561  Sum_probs=32.9

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      ..++|||++..++. .|+|+|+|+++++.|+.||+.|+
T Consensus        82 ~~~~FsIv~~~~~r-~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          82 EDRCFSIVFKDQRN-TLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             GGGEEEEEESSSCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCc-EEEEEECCHHHHHHHHHHHHHHh
Confidence            35789999988754 59999999999999999999986

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.6e-06  Score=54.04  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=34.1

Q ss_pred             CcceeeEEecCCCc--eeEEEecCChhHHHHHHHHHHHhhCC
Q psy313            5 PDIAFSLTLDSVEI--TSLDFVAPDEEVFDYWTDGINALLGN   44 (93)
Q Consensus         5 ~~laFSl~~~~~e~--~~l~~va~~~~~~~~W~DGln~Llg~   44 (93)
                      -+..|||+|..+..  ..|+|||+++.++..|++||+.|.-+
T Consensus        85 e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~n  126 (131)
T d2zkmx3          85 LLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH  126 (131)
T ss_dssp             GGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            45699999987542  57999999999999999999999843

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.13  Score=29.76  Aligned_cols=36  Identities=28%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      .+..|.|....+  ..+.|.|.++.+...|.+.|+.++
T Consensus        67 ~~~~f~i~~~~~--~~~~f~a~s~~e~~~W~~ai~~~i  102 (106)
T d1u5da1          67 KESCFELTSQDR--RTYEFTATSPAEARDWVDQISFLL  102 (106)
T ss_dssp             GGGEEEEECSSS--CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceeEEEEcCCC--cEEEEEeCCHHHHHHHHHHHHHHH
Confidence            356788877654  248999999999999999999765

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.98  E-value=0.32  Score=28.31  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=28.1

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +..|.|....+  ..+.|.|.++.+...|.+.|+.++
T Consensus        76 ~~~f~i~~~~~--~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          76 DCCFEICAPDK--RIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             GGEEEEECTTS--CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cceEEEEccCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            46777766543  358899999999999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.91  E-value=0.56  Score=27.20  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCC
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKM   46 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m   46 (93)
                      .+.+|-|.....  ..+-|.|.++.+...|...|+...++.-
T Consensus        67 ~~~~F~i~~~~~--~~~~f~a~s~~~~~~Wi~ai~~a~~~~p  106 (109)
T d1wgqa_          67 ESKVFQLLHKGM--VFYVFKADDAHSTQRWIDAFQEGTVSGP  106 (109)
T ss_dssp             SSSEEEEEETTE--EEEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred             cceeeeeecccc--eEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence            356788877543  4589999999999999999999887653

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=86.85  E-value=0.51  Score=27.07  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=26.7

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      +..|.+....+.  ..-|.|.++.+...|++.|+.
T Consensus        73 ~~~f~i~~~~~~--~~~~~a~s~~e~~~W~~ai~~  105 (106)
T d1btna_          73 KHVFKLRLSDGN--EYLFQAKDDEEMNTWIQAISS  105 (106)
T ss_dssp             SSEEEEECTTSC--EEEEECSSHHHHHHHHHHHHH
T ss_pred             cceEeecccCCC--EEEEECCCHHHHHHHHHHHHh
Confidence            456777776653  478999999999999999985

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.81  E-value=0.59  Score=26.88  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +..|.|.........+.|.|.++.+...|...|+...|
T Consensus        62 ~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          62 LFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             SCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            45788776654334589999999999999999987765

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.97  Score=25.79  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.4

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL   41 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L   41 (93)
                      +.+|.|....  . .+.|.|.|+++...|.+.|+-|
T Consensus        70 ~~~f~i~t~~--r-~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          70 KHLVALYTRD--E-HFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             SSEEEEEESS--C-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCC--e-EEEEEcCCHHHHHHHHHHHHhh
Confidence            4577776643  2 3789999999999999999865

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.24  E-value=0.41  Score=29.56  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +.+|.|.....  ....|.|.|+.+...|++.|+..+.
T Consensus        95 ~~~F~l~t~~~--~~y~f~A~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_          95 DNTFVLKVENG--AEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             TTEECCBCTTS--CBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC--cEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45788866553  3367999999999999999998775

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.82  Score=28.16  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      ...+|.|.....  ..+.|.|.++.+...|+..|+..+.
T Consensus        88 ~~~~F~i~~~~~--~~~~l~A~s~~e~~~Wi~aL~~~i~  124 (150)
T d1wg7a_          88 RRFAFELKMQDK--SSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             CTTEEEEECSSS--CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEcCCC--eEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            346788876553  3488999999999999999997653

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.27  E-value=1.1  Score=25.38  Aligned_cols=32  Identities=13%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             ceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      ..|.+....+  ..+.|.|.|+++...|...|+.
T Consensus        73 ~~~~i~~~~~--~~~~~~a~s~~e~~~Wi~al~~  104 (107)
T d1upqa_          73 FTFTAEHPGM--RTYVLAADTLEDLRGWLRALGR  104 (107)
T ss_dssp             SEEEEECTTS--CCEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCC--eEEEEEcCCHHHHHHHHHHHHH
Confidence            3455554433  3489999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=1.2  Score=25.76  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=28.8

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      ...|.|...++  ..+.|.|.|+++...|...|+..+.
T Consensus        66 ~~~f~l~~~~~--~~~~~~a~s~~e~~~Wi~ai~~ai~  101 (113)
T d1plsa_          66 MFVFKITTTKQ--QDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             SSEEEEEETTT--EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCC--eEEEEECCCHHHHHHHHHHHHHHHH
Confidence            45677776654  3589999999999999999987654

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=82.54  E-value=1  Score=26.39  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=28.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG   43 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg   43 (93)
                      +..|.+....+  ..+.|.|.++.+...|.+.|+.-..
T Consensus        82 ~~~f~i~~~~~--~~~~l~a~s~~e~~~Wi~aI~~a~~  117 (123)
T d1wjma_          82 KHVFKLGLQDG--KEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             SSEEEEECSSS--CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC--cEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45566666554  3488999999999999999997553

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.00  E-value=1.2  Score=24.97  Aligned_cols=32  Identities=16%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      ..+|.|....   ..+-|.|.++++...|++.|+.
T Consensus        65 ~~~F~i~~~~---r~~~l~A~s~~e~~~Wi~aL~~   96 (99)
T d2coca1          65 GHVWKLQWAK---QSWYLSASSAELQQQWLETLST   96 (99)
T ss_dssp             SEEEEEEETT---EEEEEEESSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCC---cEEEEECCCHHHHHHHHHHHHH
Confidence            4567775432   3588999999999999999974

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=1.2  Score=25.59  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=27.1

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL   42 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll   42 (93)
                      +.+|.|....   ..+.|.|.|+.+...|.+.|+.-+
T Consensus        64 ~~~F~i~~~~---r~~~l~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          64 VNCFCLVFPF---RTFYLCAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             SSEEEEEETT---EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccccccCC---eEEEEEeCCHHHHHHHHHHHHHHH
Confidence            4568887653   348899999999999999998644

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.92  E-value=0.59  Score=27.20  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=27.0

Q ss_pred             cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313            6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA   40 (93)
Q Consensus         6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~   40 (93)
                      ...|.|....+.. .+.|.|.++++...|...|+-
T Consensus        66 ~~~f~i~~~~~~~-~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          66 RYCFQITSFDGKK-SSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             SSSSEECCCSSSC-CCCEECSSHHHHHHHHHHHHH
T ss_pred             cceEEEEeecccc-eEEEECCCHHHHHHHHHHHHh
Confidence            4568887665443 488999999999999999874

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=1.1  Score=25.57  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=25.7

Q ss_pred             ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313            7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL   41 (93)
Q Consensus         7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L   41 (93)
                      ..|.+....+  ..+.|.|.++++...|...|+-+
T Consensus        83 ~~f~i~~~~~--~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          83 NLFKVITKDD--THYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SCEEECCTTC--CCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ceeEEEeCCC--eEEEEECCCHHHHHHHHHHHHhh
Confidence            4567766554  34789999999999999999754

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.41  E-value=0.9  Score=26.88  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             EEEecCChhHHHHHHHHHHHhhCCCCC
Q psy313           21 LDFVAPDEEVFDYWTDGINALLGNKMT   47 (93)
Q Consensus        21 l~~va~~~~~~~~W~DGln~Llg~~m~   47 (93)
                      +.|.|+++++...|.+.|+..++....
T Consensus       102 ~~l~A~s~~e~~~Wi~al~~~i~~~p~  128 (130)
T d1v88a_         102 LIIRATSESDGRCWMDALELALKSGPS  128 (130)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhcCCC
Confidence            678999999999999999998876543