Psyllid ID: psy3152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELTHTPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVVST
ccccHHHHHcHHHHHHccHHHHHHHHHcccEEEEEEEcccccEEEEcccEEEEEEEEcccccEEEEEEcccccccccccccccccEEEEccEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccc
cccHHHHHHHHHHHHHccHHHHHHHHHccEEEEEEEccccccEEEccccEEEEEEEEccccccEEEEEEcccccccccccccccEEEEcccEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc
makltdsevnvsairrvdpMVKDLVDSATHVALYSFnghksewdktniEGALFVYrrvesplysmfilnrnspenllEPVVKELdlqlqnpfilyknkqgliygiwfynkedchRISDILQSLVKElthtpssskpnlkpkkpveqmgNGLIMNMLTKAQEeynshkspmrndkprelesapqSVMDFFAKAgvsqgvgenhlpqppgfvnppaaipiiqrpaayvvpppaapvaevshpiiqrimsnpvhsveHIEKQqrsitpqaggarvkdmaavPVELENNMlfmrisdspiptqqffnsnlsqpvdaLHMNGLElvesnksalmpptmftssstskdagdklmngilgaepippkhiepltKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVVST
makltdsevnvsairrvdpmvKDLVDSATHVALYsfnghksewdktNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELthtpssskpnlkpkkpvEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQrsitpqaggarvKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVEsnksalmppTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNsfkdvvst
MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELTHTpssskpnlkpkkpVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNppaaipiiqrpaayvvpppaapvaEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVESNKSALMPPTMFtssstsKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVVST
************AIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK*****************************************************************************************AIPIIQ********************************************************AVPVELENNMLFMRIS********F************************************************************IEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFK*****
***LTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK*******************************************************************************************************************************************************************************************************************************************************AVSHLLKHDADFVNKLHEAYLNSFKDV***
********VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELT************KKPVEQMGNGLIMNMLTKAQE******************SAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVVST
****TDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELTHT************************MLTK*******H************************************************************************************************************************************************************************************************PKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVV**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELTHTPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVVST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q3U564 578 mRNA-decapping enzyme 1B yes N/A 0.383 0.266 0.440 4e-36
Q3SZL6 581 mRNA-decapping enzyme 1B yes N/A 0.407 0.282 0.398 8e-35
Q5R413 609 mRNA-decapping enzyme 1B yes N/A 0.395 0.261 0.418 2e-34
Q8IZD4 617 mRNA-decapping enzyme 1B yes N/A 0.395 0.257 0.418 2e-34
Q91YD3 602 mRNA-decapping enzyme 1A no N/A 0.383 0.255 0.406 8e-32
Q9NPI6 582 mRNA-decapping enzyme 1A no N/A 0.388 0.268 0.401 1e-31
Q9SJF3367 mRNA-decapping enzyme-lik yes N/A 0.315 0.346 0.323 9e-24
Q9P805127 mRNA-decapping enzyme sub yes N/A 0.288 0.913 0.305 2e-10
Q74Z05193 mRNA-decapping enzyme sub yes N/A 0.296 0.616 0.225 1e-06
>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1 Back     alignment and function desciption
 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 14/168 (8%)

Query: 8   EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
           +++++A+RR DP +  +VD A+ VALY+F    +EW+KT +EG LFVY R  SP +   I
Sbjct: 15  DISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGFTI 74

Query: 68  LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK-- 125
           +NR S EN  EP+ K+LD QLQNPF+LY+N    IYGIWFY+KE+C RI+ ++++L +  
Sbjct: 75  MNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQSE 134

Query: 126 --ELTHTPSSSKPNLKPKKPVEQMGNGL---IMNMLTKAQEEYNSHKS 168
             +  H   SS   L         G G    I+ MLTKA++EY   K+
Sbjct: 135 QLKACHGAGSSPVTLS-------SGEGQEVDILQMLTKAKDEYTKCKT 175
May play a role in the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. May remove the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1 Back     alignment and function description
>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1 Back     alignment and function description
>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2 Back     alignment and function description
>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1 Back     alignment and function description
>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2 Back     alignment and function description
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2 Back     alignment and function description
>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1 Back     alignment and function description
>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
357620959419 hypothetical protein KGM_11333 [Danaus p 0.875 0.840 0.381 7e-68
340723836460 PREDICTED: hypothetical protein LOC10064 0.927 0.810 0.358 7e-62
350406072460 PREDICTED: hypothetical protein LOC10074 0.927 0.810 0.358 3e-61
110762141463 PREDICTED: hypothetical protein LOC40841 0.925 0.803 0.349 2e-60
332028462445 mRNA-decapping enzyme 1B [Acromyrmex ech 0.912 0.824 0.350 2e-60
307167285460 mRNA-decapping enzyme 1A [Camponotus flo 0.930 0.813 0.359 5e-60
193671586425 PREDICTED: hypothetical protein LOC10016 0.905 0.856 0.355 3e-59
242021877404 smif, putative [Pediculus humanus corpor 0.878 0.873 0.376 4e-59
383857493464 PREDICTED: uncharacterized protein LOC10 0.935 0.810 0.353 5e-59
91089857394 PREDICTED: similar to Decapping protein 0.853 0.870 0.360 1e-58
>gi|357620959|gb|EHJ72962.1| hypothetical protein KGM_11333 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 245/451 (54%), Gaps = 99/451 (21%)

Query: 9   VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFIL 68
           +N++A++R DP  ++++DSATHVALY+F   ++EW+KTNIEGALFVY R   P +S+ I+
Sbjct: 1   MNLTALKRADPYAREIIDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHSLVIM 58

Query: 69  NRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELT 128
           NR +  NL+EPV + ++LQL+ PF+LY+N +  IYGIWFY+K++C R++  L SLVK+  
Sbjct: 59  NRLNTNNLIEPVSRGIELQLKEPFLLYRNAKCRIYGIWFYDKDECIRVATKLNSLVKDSI 118

Query: 129 HTPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDK-----PRELESAPQ 183
             P+    N     P +   +  I +ML+KAQ+++N++K  + N+K      R  + A Q
Sbjct: 119 KAPNEMSQNPTYSAPAKTNASVDIFSMLSKAQDDFNTNKG-LTNNKNDLTPTRAPDMASQ 177

Query: 184 SVMDFFAKAG---VSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEVSHP 240
           SVMDFFAKAG    +Q    + LP P G   P        RP      P           
Sbjct: 178 SVMDFFAKAGSGAAAQMPAVSSLPSP-GMFGP--------RPNDVRETPL---------- 218

Query: 241 IIQRIMSNPVHSVEHIEKQQRSITPQAGGA------------------------------ 270
           ++QR+MSNP HSVEHIEKQQRS+TPQ   +                              
Sbjct: 219 LLQRLMSNPAHSVEHIEKQQRSVTPQEAQSSNGNVSIDPMMRQNSSFQLKSTPLDKHSQH 278

Query: 271 RVKDMAAV--------PVELENNMLFMRISD----SPIPTQQFFNSNLSQPVDALHMNGL 318
           R+ ++  +        P  LEN +  M IS     SP+ T      ++   V + +   L
Sbjct: 279 RITNLQKIQLDGDTNGPNPLENELNLMHISSPKPTSPLATYLNHTQDIGHQVGSYNGGKL 338

Query: 319 E-----------LVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTK 367
           E           L    K ALMPPTMFT+       G+ +       +P P    EPLT+
Sbjct: 339 EEVGGVFPIMNSLTNQQKPALMPPTMFTAI-----PGNDI-------QPSP----EPLTR 382

Query: 368 NQIVQAVSHLLKHDADFVNKLHEAYLNSFKD 398
           NQ++QAV++LL+HDADFVNKLHEAY+ SF +
Sbjct: 383 NQLLQAVNYLLRHDADFVNKLHEAYVKSFSE 413

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340723836|ref|XP_003400294.1| PREDICTED: hypothetical protein LOC100647115 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350406072|ref|XP_003487645.1| PREDICTED: hypothetical protein LOC100749198 [Bombus impatiens] Back     alignment and taxonomy information
>gi|110762141|ref|XP_391963.3| PREDICTED: hypothetical protein LOC408416 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|332028462|gb|EGI68505.1| mRNA-decapping enzyme 1B [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307167285|gb|EFN60953.1| mRNA-decapping enzyme 1A [Camponotus floridanus] Back     alignment and taxonomy information
>gi|193671586|ref|XP_001952488.1| PREDICTED: hypothetical protein LOC100168709 isoform 1 [Acyrthosiphon pisum] gi|328712398|ref|XP_003244801.1| PREDICTED: hypothetical protein LOC100168709 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242021877|ref|XP_002431369.1| smif, putative [Pediculus humanus corporis] gi|212516645|gb|EEB18631.1| smif, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383857493|ref|XP_003704239.1| PREDICTED: uncharacterized protein LOC100875908 [Megachile rotundata] Back     alignment and taxonomy information
>gi|91089857|ref|XP_971049.1| PREDICTED: similar to Decapping protein 1 CG11183-PA [Tribolium castaneum] gi|270013572|gb|EFA10020.1| hypothetical protein TcasGA2_TC012192 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
FB|FBgn0034921372 Dcp1 "Decapping protein 1" [Dr 0.507 0.548 0.379 3.7e-46
UNIPROTKB|I3LE95 560 DCP1B "Uncharacterized protein 0.485 0.348 0.374 1.8e-39
UNIPROTKB|E2R259 612 DCP1B "Uncharacterized protein 0.420 0.276 0.404 7.4e-38
UNIPROTKB|Q8IZD4 617 DCP1B "mRNA-decapping enzyme 1 0.482 0.314 0.368 8.2e-38
MGI|MGI:2442404 578 Dcp1b "DCP1 decapping enzyme h 0.388 0.269 0.457 2.8e-37
UNIPROTKB|F1MLY3 581 DCP1B "mRNA-decapping enzyme 1 0.415 0.287 0.4 3.4e-37
UNIPROTKB|Q3SZL6 581 DCP1B "mRNA-decapping enzyme 1 0.415 0.287 0.4 3.4e-37
RGD|1562214 582 Dcp1b "DCP1 decapping enzyme h 0.422 0.292 0.412 1.2e-36
UNIPROTKB|F1N4I7 579 DCP1A "Uncharacterized protein 0.437 0.303 0.363 5.6e-34
UNIPROTKB|F1PGG7 580 DCP1A "Uncharacterized protein 0.437 0.303 0.363 5.7e-34
FB|FBgn0034921 Dcp1 "Decapping protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 380 (138.8 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 80/211 (37%), Positives = 123/211 (58%)

Query:     1 MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVES 60
             MA  + + +N++AI+++DP  K++VDS++HVA Y+FN  ++EW+KT++EGA F+Y R   
Sbjct:     1 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAE 60

Query:    61 PLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDIL 120
             P +S+FI NR +  + +EP+   L+LQ Q PF+LY+N++  I G WFYN E+C RIS ++
Sbjct:    61 PFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLV 120

Query:   121 QSLVKELTH-TXXXXXXXXXXXXXVEQMGN--GLIMNMLTKAQEEYNSHKSPMRNDKPRE 177
               L+K     T              +Q  +    I NMLTKAQ++YN+  S  +   P  
Sbjct:   121 NGLLKSKDQGTNGQAQRHVSAPQQPKQDSSQPASIFNMLTKAQKDYNAQVSGGQPKTPSA 180

Query:   178 LESAPQSVMDFFAKAGVSQGVGEN--HLPQP 206
                   +V+ FF  A   Q   E+  H  QP
Sbjct:   181 ENVTAGNVLKFFESA--KQATAESLFHRVQP 209
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IMP
GO:0043186 "P granule" evidence=IDA
GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP
GO:0035195 "gene silencing by miRNA" evidence=IMP
GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP
GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA
GO:0010603 "regulation of cytoplasmic mRNA processing body assembly" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IMP
UNIPROTKB|I3LE95 DCP1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R259 DCP1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IZD4 DCP1B "mRNA-decapping enzyme 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442404 Dcp1b "DCP1 decapping enzyme homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLY3 DCP1B "mRNA-decapping enzyme 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZL6 DCP1B "mRNA-decapping enzyme 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1562214 Dcp1b "DCP1 decapping enzyme homolog b (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4I7 DCP1A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGG7 DCP1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
cd09804121 cd09804, Dcp1, mRNA decapping enzyme 1 (Dcp1) 2e-56
cd13182116 cd13182, EVH1-like_Dcp1, Decapping enzyme EVH1-lik 2e-53
pfam06058123 pfam06058, DCP1, Dcp1-like decapping family 3e-46
>gnl|CDD|197362 cd09804, Dcp1, mRNA decapping enzyme 1 (Dcp1) Back     alignment and domain information 
 Score =  180 bits (460), Expect = 2e-56
 Identities = 56/117 (47%), Positives = 86/117 (73%)

Query: 8   EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
            +N+  ++R DP +  ++D+A+HVA+Y F+   +EW+KT++EG LFVY+R   P Y   I
Sbjct: 5   ALNLKVLQRHDPYIVSILDTASHVAVYEFDDDTNEWEKTDVEGTLFVYKRSAEPRYGFII 64

Query: 68  LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLV 124
           LNR S ENL+EP+  EL+L+LQ+P+++Y+N  G IYGIWFY++ED  RI  +L+ L+
Sbjct: 65  LNRLSTENLIEPITPELELELQDPYLIYRNANGEIYGIWFYDEEDRERIYKLLERLL 121

mRNA decapping enzyme 1 (Dcp1), together with Dcp2, is part of the decapping complex which catalyzes the removal of the 5' cap structure of mRNA. This decapping reaction is an essential step in mRNA degradation, by exposing the 5' end for exonucleolytic digestion. Dcp1 binds to the N-terminal helical domain of catalytic subunit Dcp2 and enhances its function by promoting Dsp2's closed conformation which is catalytically more active. Length = 121
>gnl|CDD|241336 cd13182, EVH1-like_Dcp1, Decapping enzyme EVH1-like domain Back     alignment and domain information
>gnl|CDD|147945 pfam06058, DCP1, Dcp1-like decapping family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
KOG2868|consensus335 100.0
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 100.0
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 97.58
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 97.3
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 96.39
KOG3671|consensus 569 96.23
smart00160130 RanBD Ran-binding domain. Domain of apporximately 95.4
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 95.21
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 95.12
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 94.54
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 90.07
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 88.68
>KOG2868|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.6e-46  Score=362.77  Aligned_cols=158  Identities=42%  Similarity=0.828  Sum_probs=142.0

Q ss_pred             cccchhhHHHHHhcCcchHHHHhhCCcEEEEEeeCCCCCccccCceeeEEEEEeCCCCceEEEEecCCCCCCceeeCcCc
Q psy3152           4 LTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPVVKE   83 (402)
Q Consensus         4 ~t~~~lNL~VLqR~DP~I~sIL~~AshVvVY~Fd~~tneWeKtdIEGtLFVy~Rs~~P~y~liILNR~s~eNfie~It~~   83 (402)
                      ..++++||+||+||||+|++|||+++||+||+||...++|+|++|||+||||+|+..|+++|+|+||++++||+++|+++
T Consensus        10 ~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~R~~~p~~gf~i~NR~~~~nf~e~lt~d   89 (335)
T KOG2868|consen   10 FRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYKRDASPRHGFLIVNRLSPDNFVEPLTKD   89 (335)
T ss_pred             HhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEEccCCCccceEeecCCChhhhhhhcCCC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeCCEEEEEcCCCcEEEEEeeccchhHHHHHHHHHHHHHhhcCCC-CCCCC-CCCCCCC-CCCCcchHHHHHHHhH
Q psy3152          84 LDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELTHTPS-SSKPN-LKPKKPV-EQMGNGLIMNMLTKAQ  160 (402)
Q Consensus        84 le~elq~~fLiyRn~~~~IyGIWFyd~ed~~rI~~ll~~lv~~~~~~~~-~~~p~-~~~~~~~-~~~~~vdI~~mLskAq  160 (402)
                      ++|+++|+||+|||+.++||||||||++||.||+.++++++........ ...+. .++.... +..+.+||++||.||+
T Consensus        90 ~~~~~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll~~~~~~~~~qa~~~~sss~~~~~s~~~p~~i~~m~~~a~  169 (335)
T KOG2868|consen   90 LIFQLQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLLYRYGLITQNQARPANSSSQIPPNSVVAPRDIFNMLEKAK  169 (335)
T ss_pred             eeeeecCcceeeeccccceeEEEecCcchHHHHHHHHHHHHHHhhhhhhhhcCcccCCccCCcccccCchhhhhhhhhcc
Confidence            9999999999999999999999999999999999999999999887665 22332 1222222 5556789999999999


Q ss_pred             H
Q psy3152         161 E  161 (402)
Q Consensus       161 ~  161 (402)
                      +
T Consensus       170 ~  170 (335)
T KOG2868|consen  170 D  170 (335)
T ss_pred             C
Confidence            8

>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>KOG3671|consensus Back     alignment and domain information
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2lyd_A134 The Solution Structure Of The Dm Dcp1 Evh1 Domain I 5e-33
2qkl_A127 The Crystal Structure Of Fission Yeast Mrna Decappi 1e-11
1q67_A231 Crystal Structure Of Dcp1p Length = 231 6e-04
>pdb|2LYD|A Chain A, The Solution Structure Of The Dm Dcp1 Evh1 Domain In Complex With The Xrn1 Dbm Peptide Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 91/125 (72%)
Query: 1   MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVES 60
           MA  + + +N++AI+++DP  K++VDS++HVA Y+FN  ++EW+KT++EGA F+Y R   
Sbjct: 8   MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAE 67
Query: 61  PLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDIL 120
           P +S+FI NR +  + +EP+   L+LQ Q PF+LY+N++  I G WFYN E+C RIS ++
Sbjct: 68  PFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLV 127
Query: 121 QSLVK 125
             L+K
Sbjct: 128 NGLLK 132
>pdb|2QKL|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 127 Back     alignment and structure
>pdb|1Q67|A Chain A, Crystal Structure Of Dcp1p Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 1e-44
1q67_A231 Decapping protein involved in mRNA degradation- DC 2e-17
1q67_A231 Decapping protein involved in mRNA degradation- DC 2e-09
2wx4_A46 DCP1, decapping protein 1; asymmetric assembly, tr 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
2wx3_A51 MRNA-decapping enzyme 1A; structural protein, trim 2e-04
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Length = 127 Back     alignment and structure
 Score =  150 bits (379), Expect = 1e-44
 Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 2   AKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESP 61
             +  + VN+  ++   P ++ ++D A+HVA+Y F+    +W KT+IEG  F+ +  +  
Sbjct: 4   ENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKD-QRA 62

Query: 62  LYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQ 121
                ILNRNSPENL   +    ++ L + +++++ +   + G+W ++  D  RI +I++
Sbjct: 63  RVGYVILNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVK 122

Query: 122 SLVKE 126
             +  
Sbjct: 123 ESLLR 127
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7 Length = 231 Back     alignment and structure
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7 Length = 231 Back     alignment and structure
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster} Length = 46 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens} Length = 51 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
2lyd_A134 Decapping protein 1; DCP1, XRN1, transcription-pro 100.0
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 100.0
1q67_A231 Decapping protein involved in mRNA degradation- DC 100.0
2wx4_A46 DCP1, decapping protein 1; asymmetric assembly, tr 99.69
2wx3_A51 MRNA-decapping enzyme 1A; structural protein, trim 99.65
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 97.32
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 97.3
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 97.29
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 97.16
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 97.07
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 96.73
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 96.69
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 95.86
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 95.24
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 95.21
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 93.72
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 93.7
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 93.32
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 92.17
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 92.11
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 91.93
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 90.71
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 90.52
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 85.74
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=7.6e-48  Score=337.91  Aligned_cols=126  Identities=45%  Similarity=0.914  Sum_probs=123.7

Q ss_pred             CCCcccchhhHHHHHhcCcchHHHHhhCCcEEEEEeeCCCCCccccCceeeEEEEEeCCCCceEEEEecCCCCCCceeeC
Q psy3152           1 MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLEPV   80 (402)
Q Consensus         1 Mad~t~~~lNL~VLqR~DP~I~sIL~~AshVvVY~Fd~~tneWeKtdIEGtLFVy~Rs~~P~y~liILNR~s~eNfie~I   80 (402)
                      |||+++.+|||+||||+||+|++||++|+||+||+||.++++|+|+||||+||||+|+..|+|+||||||++++||+++|
T Consensus         8 m~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~~~l   87 (134)
T 2lyd_A            8 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVEPI   87 (134)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEEEEC
T ss_pred             cChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCcceeEEc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEeCCEEEEEcCCCcEEEEEeeccchhHHHHHHHHHHHHH
Q psy3152          81 VKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKE  126 (402)
Q Consensus        81 t~~le~elq~~fLiyRn~~~~IyGIWFyd~ed~~rI~~ll~~lv~~  126 (402)
                      +++++++++++||+||+++++|||||||+++||+||+++|++|++.
T Consensus        88 ~~~~~~e~~~~~li~r~~~~~I~GiWf~~~~d~~~i~~~l~~l~~~  133 (134)
T 2lyd_A           88 TGSLELQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLVNGLLKS  133 (134)
T ss_dssp             CSSCEEEEETTEEEEEEGGGEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEeeCCEEEEECCCCcEEEEEecChHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999874
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Back     alignment and structure
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7 Back     alignment and structure
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster} Back     alignment and structure
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens} Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1q67a_207 b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces c 1e-15
d1q67a_207 b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces c 3e-15
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 207 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Dcp1
domain: Dcp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (178), Expect = 1e-15
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 9   VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESP------- 61
           +N + I R DP +K L+    H +LY ++  K EW+K   +G L +Y R  S        
Sbjct: 1   LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPV 60

Query: 62  -LYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQG 100
               + I +  +  N ++      +    +       K  
Sbjct: 61  SPQEVDIFDSQNGSNNIQVNNGSDNSNRNSSGNGNSYKSN 100
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1q67a_207 Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 97.59
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 96.92
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 96.6
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 96.53
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 95.61
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 94.76
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 94.27
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 91.65
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 90.52
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Dcp1
domain: Dcp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-41  Score=308.84  Aligned_cols=119  Identities=29%  Similarity=0.578  Sum_probs=112.9

Q ss_pred             hhHHHHHhcCcchHHHHhhCCcEEEEEeeCCCCCccccCceeeEEEEEeCCCCc--------------------------
Q psy3152           9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPL--------------------------   62 (402)
Q Consensus         9 lNL~VLqR~DP~I~sIL~~AshVvVY~Fd~~tneWeKtdIEGtLFVy~Rs~~P~--------------------------   62 (402)
                      |||+||||+||+|++||++|+||+||+||.++++|+|++|||+||||+|+..|+                          
T Consensus         1 LNl~vLqR~Dp~I~~IL~~a~hv~vY~f~~~~~~WeK~~vEGtLFVy~R~~~p~~~~lp~~~y~~~~~~~~~~~~~i~~~   80 (207)
T d1q67a_           1 LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPVSPQEVDIFDSQNGSNNIQVN   80 (207)
T ss_dssp             CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----------------------------
T ss_pred             CcHHHhhhhChhHHHHHhhCCeEEEEEecCCcCceeecCceeEEEEEEeccccccccCCccchhhhhccccccccccccc
Confidence            799999999999999999999999999999999999999999999999998886                          


Q ss_pred             --------------------------------------eEEEEecCCCCCCc---------------------eeeCcCc
Q psy3152          63 --------------------------------------YSMFILNRNSPENL---------------------LEPVVKE   83 (402)
Q Consensus        63 --------------------------------------y~liILNR~s~eNf---------------------ie~It~~   83 (402)
                                                            |+||||||+++|||                     +|+|+++
T Consensus        81 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygliIlNR~npeNfs~~i~pn~~~~~~~~~~~~~~~E~~~~~  160 (207)
T d1q67a_          81 NGSDNSNRNSSGNGNSYKSNDSLTYNCGKTLSGKDIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLEC  160 (207)
T ss_dssp             ---------------------------------CCCCSEEEEEEESSSSCEEEEEECCHHHHHHHHHHCHHHHHHSCCCC
T ss_pred             ccccccccchhcccccccccccccccccccccccccceeeEEEecCCChhhccccccccccccccccccccccccccccc
Confidence                                                  99999999999999                     7888899


Q ss_pred             ceeEEeCCEEEEEcCCCcEEEEEeeccchhHHHHHHHHHHHHHh
Q psy3152          84 LDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKEL  127 (402)
Q Consensus        84 le~elq~~fLiyRn~~~~IyGIWFyd~ed~~rI~~ll~~lv~~~  127 (402)
                      +++|++++|||||+..++|||||||+.+||++|+++|+.|++..
T Consensus       161 m~~e~~~~~ii~rn~~~eI~GIWf~~~~dre~i~~ll~~il~ne  204 (207)
T d1q67a_         161 MGVEVKDELVIIKNLKHEVYGIWIHTVSDRQNIYELIKYLLENE  204 (207)
T ss_dssp             CEEEEETTEEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             ceeEecCceEEEEcCCCcEEEEEEecHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999888654
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure