Psyllid ID: psy3171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MSLFGLLSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLTNT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccEEEEEEccccEEEEEccccccEEcccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEHHEHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHccccccccEEEEEEEEccccHHHHHHHHHHHHccEEcccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mslfgllsredegfikeeekplpshefQRKVWLLfeypessqAARVVAIISVFVILLSIVIFCLetlpefkhykvfntttngtkieedevpditdpffLIETLCIIWFTFELSVRFlacpnklnfFRDVMNIIDIIAIIPYFITLATVVAEeedvlnlpkapvspqdkstNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFIlhiipssilfrGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYqvdlrgtpdqvdltgtpdqvdlvgtpdqvyltnt
Flexible Loop (DISEMBL)
mslfgllsredegfikeeekplpsheFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTttngtkieedevpDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNlpkapvspqdkstNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVlrlskakvPIVIFRYLLCNSRYSQVTRVLRAATHyqvdlrgtpdqvdltgtpdqvdlvgtpdqvyltnt
Low Complexity Region (SEG)
MSLFGLLSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARvvaiisvfvillsivifCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNiidiiaiipyfiTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAilrvirlvrvfrifKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLTNT
Disordered region (IsUnstruct)
**************************FQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLN****************MSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLT******DLV***********
Disordered Region (DISOPRED)
*SLFGLLSREDE******E***PSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLN************TNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIV*RLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLT**
Disordered Region (DISEMBL)
MSLFGLLSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKA*********NQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLTNT
Disordered Region (DISPRO)
*****LLSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKH******************PDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE********************AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLTNT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFGLLSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQVYLTNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
P08510	655	Potassium voltage-gated c	yes	N/A	0.645	0.300	0.954	1e-106
Q09470	495	Potassium voltage-gated c	yes	N/A	0.6	0.369	0.656	2e-67
P16388	495	Potassium voltage-gated c	yes	N/A	0.6	0.369	0.656	3e-67
P10499	495	Potassium voltage-gated c	yes	N/A	0.6	0.369	0.656	3e-67
Q9I830	494	Potassium voltage-gated c	N/A	N/A	0.606	0.374	0.648	5e-66
P16390	528	Potassium voltage-gated c	no	N/A	0.6	0.346	0.616	1e-65
P16389	499	Potassium voltage-gated c	no	N/A	0.603	0.368	0.631	2e-65
P63142	499	Potassium voltage-gated c	no	N/A	0.603	0.368	0.631	2e-65
P63141	499	Potassium voltage-gated c	no	N/A	0.603	0.368	0.631	2e-65
Q28293	499	Potassium voltage-gated c	no	N/A	0.603	0.368	0.631	2e-65

>sp|P08510|KCNAS_DROME Potassium voltage-gated channel protein Shaker OS=Drosophila melanogaster GN=Sh PE=1 SV=3

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 371 RIFKLSRHSKGLQILGR 387

Voltage-dependent potassium channel involved in regulation of sleep need or efficiency. Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|Q09470|KCNA1_HUMAN Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 153/201 (76%), Gaps = 18/201 (8%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVIFCLETLP
Sbjct: 131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query: 69  EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
           E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct: 191 ELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query: 125 FFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRL 184
           FF+++MN IDI+AIIPYFITL T +AE+E             ++   QA SLAILRVIRL
Sbjct: 249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query: 185 VRVFRIFKLSRHSKGLQILGR 205
           VRVFRIFKLSRHSKGLQILG+
Sbjct: 297 VRVFRIFKLSRHSKGLQILGQ 317

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P16388|KCNA1_MOUSE Potassium voltage-gated channel subfamily A member 1 OS=Mus musculus GN=Kcna1 PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 153/201 (76%), Gaps = 18/201 (8%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVIFCLETLP
Sbjct: 131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query: 69  EFKHYKVFNTT----TNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
           E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct: 191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query: 125 FFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRL 184
           FF+++MN IDI+AIIPYFITL T +AE+E             ++   QA SLAILRVIRL
Sbjct: 249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query: 185 VRVFRIFKLSRHSKGLQILGR 205
           VRVFRIFKLSRHSKGLQILG+
Sbjct: 297 VRVFRIFKLSRHSKGLQILGQ 317

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|P10499|KCNA1_RAT Potassium voltage-gated channel subfamily A member 1 OS=Rattus norvegicus GN=Kcna1 PE=1 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 153/201 (76%), Gaps = 18/201 (8%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVIFCLETLP
Sbjct: 131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query: 69  EFKHYKVFNTT----TNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
           E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct: 191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query: 125 FFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRL 184
           FF+++MN IDI+AIIPYFITL T +AE+E             ++   QA SLAILRVIRL
Sbjct: 249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query: 185 VRVFRIFKLSRHSKGLQILGR 205
           VRVFRIFKLSRHSKGLQILG+
Sbjct: 297 VRVFRIFKLSRHSKGLQILGQ 317

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|Q9I830|KCNA2_ONCMY Potassium voltage-gated channel subfamily A member 2 OS=Oncorhynchus mykiss GN=kcna2 PE=2 SV=1

 Score =  251 bits (640), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/205 (64%), Positives = 157/205 (76%), Gaps = 20/205 (9%)

Query: 7   LSREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLET 66
           L REDEGF+KEEE+PLP +EFQR+VWLLFEYPESS  AR++AIISV VIL+SIV FCLET
Sbjct: 124 LFREDEGFVKEEERPLPDNEFQRQVWLLFEYPESSGPARIIAIISVMVILISIVSFCLET 183

Query: 67  LPEFKH-----YKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPN 121
           LP F++     + VF+T TN T          TDPFF++ETLCIIWF+FE  VR  ACP+
Sbjct: 184 LPIFRNDDDEPHSVFDTNTNTTIYFTSTY--FTDPFFILETLCIIWFSFEFLVRLFACPS 241

Query: 122 KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAILR 180
           K  FF +VMNIID++AIIPYFITLAT +AE+            P+D ++  QAMSLAILR
Sbjct: 242 KSGFFGNVMNIIDVVAIIPYFITLATELAEK------------PEDGQAGQQAMSLAILR 289

Query: 181 VIRLVRVFRIFKLSRHSKGLQILGR 205
           VIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 290 VIRLVRVFRIFKLSRHSKGLQILGQ 314

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Oncorhynchus mykiss (taxid: 8022)

>sp|P16390|KCNA3_MOUSE Potassium voltage-gated channel subfamily A member 3 OS=Mus musculus GN=Kcna3 PE=2 SV=3

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 149/206 (72%), Gaps = 23/206 (11%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGF++EEE+PLP  +FQR+VWLLFEYPESS  AR +AI+SV VIL+SIVIFCLETLP
Sbjct: 151 REDEGFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLP 210

Query: 69  EFKHYK---------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLAC 119
           EF+  K         VF    N T          +DPFF++ETLCIIWF+FEL VRF AC
Sbjct: 211 EFRDEKDYPASPSQDVFEAANNSTSGAPSGASSFSDPFFVVETLCIIWFSFELLVRFFAC 270

Query: 120 PNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAIL 179
           P+K  F R++MN+IDI+AIIPYFITL T +AE +               +  QAMSLAIL
Sbjct: 271 PSKATFSRNIMNLIDIVAIIPYFITLGTELAERQG--------------NGQQAMSLAIL 316

Query: 180 RVIRLVRVFRIFKLSRHSKGLQILGR 205
           RVIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 317 RVIRLVRVFRIFKLSRHSKGLQILGQ 342

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 154/206 (74%), Gaps = 22/206 (10%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGSGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245

Query: 121 NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAIL 179
           +K  FF ++MNIIDI+AIIPYFITL T +AE+            P+D +   QAMSLAIL
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293

Query: 180 RVIRLVRVFRIFKLSRHSKGLQILGR 205
           RVIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P63142|KCNA2_RAT Potassium voltage-gated channel subfamily A member 2 OS=Rattus norvegicus GN=Kcna2 PE=1 SV=1

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 154/206 (74%), Gaps = 22/206 (10%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245

Query: 121 NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAIL 179
           +K  FF ++MNIIDI+AIIPYFITL T +AE+            P+D +   QAMSLAIL
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293

Query: 180 RVIRLVRVFRIFKLSRHSKGLQILGR 205
           RVIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P63141|KCNA2_MOUSE Potassium voltage-gated channel subfamily A member 2 OS=Mus musculus GN=Kcna2 PE=1 SV=1

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 154/206 (74%), Gaps = 22/206 (10%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245

Query: 121 NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAIL 179
           +K  FF ++MNIIDI+AIIPYFITL T +AE+            P+D +   QAMSLAIL
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293

Query: 180 RVIRLVRVFRIFKLSRHSKGLQILGR 205
           RVIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. Regulates neuronal excitability and is involved in non-rapid eye movement (NREM) sleep.

Mus musculus (taxid: 10090)

>sp|Q28293|KCNA2_CANFA Potassium voltage-gated channel subfamily A member 2 OS=Canis familiaris GN=KCNA2 PE=2 SV=1

 Score =  249 bits (635), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 154/206 (74%), Gaps = 22/206 (10%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245

Query: 121 NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAIL 179
           +K  FF ++MNIIDI+AIIPYFITL T +AE+            P+D +   QAMSLAIL
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293

Query: 180 RVIRLVRVFRIFKLSRHSKGLQILGR 205
           RVIRLVRVFRIFKLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
189235374	549	PREDICTED: similar to Shaker CG12348-PC	0.645	0.358	0.969	1e-106
270004253	593	hypothetical protein TcasGA2_TC003580 [T	0.645	0.332	0.969	1e-106
195567459	518	GD15655 [Drosophila simulans] gi|1942046	0.645	0.380	0.954	1e-105
195457122	639	GK17943 [Drosophila willistoni] gi|19417	0.645	0.308	0.954	1e-104
195040169	627	GH12305 [Drosophila grimshawi] gi|193900	0.645	0.314	0.954	1e-104
195132039	620	GI15934 [Drosophila mojavensis] gi|19390	0.645	0.317	0.954	1e-104
195396775	630	GJ16839 [Drosophila virilis] gi|19414677	0.645	0.312	0.954	1e-104
288442	656	Shaker [Drosophila melanogaster] gi|2258	0.645	0.300	0.954	1e-104
194768124	658	GF19526 [Drosophila ananassae] gi|190623	0.645	0.299	0.954	1e-104
386764625	644	shaker, isoform L [Drosophila melanogast	0.645	0.305	0.954	1e-104

>gi|189235374|ref|XP_001809693.1| PREDICTED: similar to Shaker CG12348-PC [Tribolium castaneum]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/197 (96%), Positives = 194/197 (98%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEEKPLPSHEFQR VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 175 REDEGFIKEEEKPLPSHEFQRNVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 234

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET+CIIWFTFELSVRFLACPNKL+FFRD
Sbjct: 235 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLHFFRD 294

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN IDIIAIIPYFITLATVVAEEED LNLP+APVSPQDKSTNQAMSLAILRVIRLVRVF
Sbjct: 295 VMNFIDIIAIIPYFITLATVVAEEEDTLNLPRAPVSPQDKSTNQAMSLAILRVIRLVRVF 354

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 355 RIFKLSRHSKGLQILGR 371

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004253|gb|EFA00701.1| hypothetical protein TcasGA2_TC003580 [Tribolium castaneum]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/197 (96%), Positives = 194/197 (98%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEEKPLPSHEFQR VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 174 REDEGFIKEEEKPLPSHEFQRNVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 233

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET+CIIWFTFELSVRFLACPNKL+FFRD
Sbjct: 234 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLHFFRD 293

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN IDIIAIIPYFITLATVVAEEED LNLP+APVSPQDKSTNQAMSLAILRVIRLVRVF
Sbjct: 294 VMNFIDIIAIIPYFITLATVVAEEEDTLNLPRAPVSPQDKSTNQAMSLAILRVIRLVRVF 353

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 354 RIFKLSRHSKGLQILGR 370

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567459|ref|XP_002107278.1| GD15655 [Drosophila simulans] gi|194204683|gb|EDX18259.1| GD15655 [Drosophila simulans]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 61  REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 120

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 121 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 180

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 181 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 240

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 241 RIFKLSRHSKGLQILGR 257

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457122|ref|XP_002075435.1| GK17943 [Drosophila willistoni] gi|194171520|gb|EDW86421.1| GK17943 [Drosophila willistoni]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 192 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 251

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 252 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 311

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 312 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 371

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 372 RIFKLSRHSKGLQILGR 388

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195040169|ref|XP_001991016.1| GH12305 [Drosophila grimshawi] gi|193900774|gb|EDV99640.1| GH12305 [Drosophila grimshawi]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 371 RIFKLSRHSKGLQILGR 387

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132039|ref|XP_002010451.1| GI15934 [Drosophila mojavensis] gi|193908901|gb|EDW07768.1| GI15934 [Drosophila mojavensis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 371 RIFKLSRHSKGLQILGR 387

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396775|ref|XP_002057004.1| GJ16839 [Drosophila virilis] gi|194146771|gb|EDW62490.1| GJ16839 [Drosophila virilis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 371 RIFKLSRHSKGLQILGR 387

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288442|emb|CAA29917.1| Shaker [Drosophila melanogaster] gi|225892|prf||1402312A K channel protein

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 371 RIFKLSRHSKGLQILGR 387

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194768124|ref|XP_001966163.1| GF19526 [Drosophila ananassae] gi|190623048|gb|EDV38572.1| GF19526 [Drosophila ananassae]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 179 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 238

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 239 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 298

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 299 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 358

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 359 RIFKLSRHSKGLQILGR 375

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764625|ref|NP_001245727.1| shaker, isoform L [Drosophila melanogaster] gi|383293459|gb|AFH07440.1| shaker, isoform L [Drosophila melanogaster]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 193/197 (97%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP
Sbjct: 179 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 238

Query: 69  EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
           EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct: 239 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 298

Query: 129 VMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVF 188
           VMN+IDIIAIIPYFITLATVVAEEED LNLPKAPVSPQDKS+NQAMSLAILRVIRLVRVF
Sbjct: 299 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 358

Query: 189 RIFKLSRHSKGLQILGR 205
           RIFKLSRHSKGLQILGR
Sbjct: 359 RIFKLSRHSKGLQILGR 375

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
FB|FBgn0003380	655	Sh "Shaker" [Drosophila melano	0.645	0.300	0.741	1.1e-71
UNIPROTKB|E1C6I6	513	LOC100858067 "Uncharacterized	0.452	0.269	0.414	1.4e-38
UNIPROTKB|F1PKN8	495	KCNA1 "Uncharacterized protein	0.6	0.369	0.472	2.6e-38
UNIPROTKB|Q09470	495	KCNA1 "Potassium voltage-gated	0.6	0.369	0.472	2.6e-38
UNIPROTKB|F1SL10	495	KCNA1 "Uncharacterized protein	0.6	0.369	0.472	2.6e-38
MGI|MGI:96654	495	Kcna1 "potassium voltage-gated	0.6	0.369	0.472	4.3e-38
RGD|2949	495	Kcna1 "potassium voltage-gated	0.6	0.369	0.472	4.3e-38
UNIPROTKB|F1P5Y9	491	KCNA1 "Uncharacterized protein	0.6	0.372	0.462	7e-38
UNIPROTKB|F1MLD6	495	KCNA1 "Uncharacterized protein	0.6	0.369	0.457	3.9e-37
UNIPROTKB|F1MKB0	499	KCNA2 "Uncharacterized protein	0.603	0.368	0.461	4.9e-37

FB|FBgn0003380 Sh "Shaker" [Drosophila melanogaster (taxid:7227)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 146/197 (74%), Positives = 150/197 (76%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAAR                 CLETLP
Sbjct:   191 REDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 250

Query:    69 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRD 128
             EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFEL+VRFLACPNKLNF RD
Sbjct:   251 EFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRD 310

Query:   129 VMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXXXXXX 188
             VMN            TLATVVAEEED LNLPKAPVSPQDKS+NQAMSLA           
Sbjct:   311 VMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVF 370

Query:   189 XXXKLSRHSKGLQILGR 205
                KLSRHSKGLQILGR
Sbjct:   371 RIFKLSRHSKGLQILGR 387

GO:0007629 "flight behavior" evidence=IMP

GO:0005249 "voltage-gated potassium channel activity" evidence=ISS;NAS;TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=NAS;TAS;IPI

GO:0016021 "integral to membrane" evidence=IDA;NAS

GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS

GO:0007619 "courtship behavior" evidence=NAS;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0048150 "behavioral response to ether" evidence=NAS

GO:0050909 "sensory perception of taste" evidence=NAS

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048675 "axon extension" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0007637 "proboscis extension reflex" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0060025 "regulation of synaptic activity" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0001508 "regulation of action potential" evidence=IMP

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

GO:0048047 "mating behavior, sex discrimination" evidence=IDA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

UNIPROTKB|E1C6I6 LOC100858067 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 61/147 (41%), Positives = 79/147 (53%)

Query:    91 PDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNXXXXXXXXXXXXTLATVVA 150
             P  TDPFFLIETLCIIWF+FEL VRF  CP+K +F R++MN            TL T +A
Sbjct:   233 PFFTDPFFLIETLCIIWFSFELLVRFFTCPSKPDFSRNIMNIIDIVAIIPYFITLGTELA 292

Query:   151 EEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXXXXXXXXXKLSRHSKGLQILGRECQFI 210
             +++      ++  S  +    QAMSLA              KLSRHSKGLQILG+  Q  
Sbjct:   293 QQQQ----QQSGSSSNNGGQQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQAS 348

Query:   211 LHIIPSSI--LFRGIFVDR---YYKET 232
             +  +   I  LF G+ +     Y+ ET
Sbjct:   349 MRELGLLIFFLFIGVILFSSAVYFAET 375

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

UNIPROTKB|F1PKN8 KCNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 95/201 (47%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE+E             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

UNIPROTKB|Q09470 KCNA1 "Potassium voltage-gated channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 95/201 (47%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE+E             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005267 "potassium channel activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0015079 "potassium ion transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0044224 "juxtaparanode region of axon" evidence=ISS

UNIPROTKB|F1SL10 KCNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 95/201 (47%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDDKDFTGTVHRLDNTTVIYNSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE+E             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

MGI|MGI:96654 Kcna1 "potassium voltage-gated channel, shaker-related subfamily, member 1" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 95/201 (47%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE+E             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=ISO;IBA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0044224 "juxtaparanode region of axon" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

RGD|2949 Kcna1 "potassium voltage-gated channel, shaker-related subfamily, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 95/201 (47%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F  T     N T I    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE+E             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQEG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0005251 "delayed rectifier potassium channel activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0044224 "juxtaparanode region of axon" evidence=IEA;ISO

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1P5Y9 KCNA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 92/199 (46%), Positives = 111/199 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIK+EE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   129 REDEGFIKDEERPLPEGEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 188

Query:    69 EFKHYKVFNT--TTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFF 126
             E K  K +    T N T++ +  +   TDPFF++ETLCIIWF+FEL VRF ACP+K  FF
Sbjct:   189 ELKEDKEYTVHRTDNTTQVYKSNI--FTDPFFVVETLCIIWFSFELVVRFFACPSKTEFF 246

Query:   127 RDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXXXX 186
             +++MN            TL T +AE E              +   QA SLA         
Sbjct:   247 KNIMNFIDIVAIIPYFITLGTEMAEREGT------------QKGEQATSLAILRVIRLVR 294

Query:   187 XXXXXKLSRHSKGLQILGR 205
                  KLSRHSKGLQILG+
Sbjct:   295 VFRIFKLSRHSKGLQILGQ 313

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

UNIPROTKB|F1MLD6 KCNA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 92/201 (45%), Positives = 112/201 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:    69 EFKHYKVF----NTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN 124
             E K  K F    +   N T +    +   TDPFF++ETLCIIWF+FEL VRF ACP+K +
Sbjct:   191 ELKDEKDFPGAVHRLDNTTVVYNANI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query:   125 FFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXXXXXX 184
             FF+++MN            TL T +AE++             ++   QA SLA       
Sbjct:   249 FFKNIMNFIDIVAIIPYFITLGTEIAEQKG------------NQKGEQATSLAILRVIRL 296

Query:   185 XXXXXXXKLSRHSKGLQILGR 205
                    KLSRHSKGLQILG+
Sbjct:   297 VRVFRIFKLSRHSKGLQILGQ 317

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

UNIPROTKB|F1MKB0 KCNA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 95/206 (46%), Positives = 114/206 (55%)

Query:     9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
             REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query:    69 EFK------HYK--VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
              F+      H     F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct:   187 IFRDENEDMHGSGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245

Query:   121 NKLNFFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAXX 179
             +K  FF ++MN            TL T +AE+            P+D +   QAMSLA  
Sbjct:   246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293

Query:   180 XXXXXXXXXXXXKLSRHSKGLQILGR 205
                         KLSRHSKGLQILG+
Sbjct:   294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0021633 "optic nerve structural organization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08510	KCNAS_DROME	No assigned EC number	0.9543	0.6459	0.3007	yes	N/A
P10499	KCNA1_RAT	No assigned EC number	0.6567	0.6	0.3696	yes	N/A
Q09470	KCNA1_HUMAN	No assigned EC number	0.6567	0.6	0.3696	yes	N/A
P16388	KCNA1_MOUSE	No assigned EC number	0.6567	0.6	0.3696	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	4e-13

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 20/107 (18%)

Query: 100 IETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLP 159
           ++ +  + FT E+ ++F+A   K  +FR   NI+D + ++P  ++L   +  E+  L   
Sbjct: 2   LDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSGL--- 58

Query: 160 KAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSR-HSKGLQILGR 205
                           L +LR++RL+R+ R+ +        LQ LGR
Sbjct: 59  ----------------LRVLRLLRLLRLLRLLRRFPGLRTLLQSLGR 89

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG1545|consensus	507		100.0
KOG3713|consensus	477		99.98
KOG2302|consensus	1956		99.93
KOG4390|consensus	632		99.84
KOG2301|consensus	1592		99.78
KOG2302|consensus	1956		99.59
KOG1419|consensus	654		99.55
KOG2301|consensus	1592		99.36
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	97.75
PLN03223	1634	Polycystin cation channel protein; Provisional	97.66
KOG1420|consensus	1103		97.56
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	96.33
KOG3599|consensus	798		95.19
KOG0498|consensus	727		93.87
KOG0501|consensus	971		91.97
KOG3713|consensus	477		88.02
TIGR00870	743	trp transient-receptor-potential calcium channel p	87.2
PF00520	200	Ion_trans: Ion transport protein calcium channel s	83.34
KOG3614|consensus	1381		81.12

>KOG1545|consensus

Probab=100.00  E-value=4e-35  Score=276.19  Aligned_cols=206  Identities=64%  Similarity=1.058  Sum_probs=168.8

Q ss_pred             cccCCCccccCCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccc-c--CCCcc
Q psy3171           9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTT-T--NGTKI   85 (305)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~-~--~~~~~   85 (305)
                      |||||+++++|.+.|+|..|+++|.++|.|+||..||...+.++++|++|++++|+||.|+++..+..+.. .  .+...
T Consensus       155 redEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~  234 (507)
T KOG1545|consen  155 REDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGV  234 (507)
T ss_pred             HhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999998754222110 0  00000


Q ss_pred             -cc--------CCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhc
Q psy3171          86 -EE--------DEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVL  156 (305)
Q Consensus        86 -~~--------~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~  156 (305)
                       .+        .-.....+++.++|..|.+||++|+++|+++||+|..|+++.+|++|+++|+|+++.+..+.+...   
T Consensus       235 ~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~---  311 (507)
T KOG1545|consen  235 MNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQ---  311 (507)
T ss_pred             cCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh---
Confidence             00        001124678999999999999999999999999999999999999999999999999988765432   


Q ss_pred             cCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy3171         157 NLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHI--IPSSILFRGIFV  225 (305)
Q Consensus       157 ~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~--i~~~~LF~~~~i  225 (305)
                           +   ++.+..|+.+..+||++|+.|++||+||.||++|+++|++|+++|+.-  ++.||||.+++.
T Consensus       312 -----g---~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviL  374 (507)
T KOG1545|consen  312 -----G---GGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVIL  374 (507)
T ss_pred             -----c---CCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0   111235678899999999999999999999999999999999999854  444556666544

>KOG3713|consensus

Probab=99.98  E-value=2.3e-32  Score=266.79  Aligned_cols=187  Identities=38%  Similarity=0.654  Sum_probs=148.9

Q ss_pred             CCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccC-CCCCCCchhhh
Q psy3171          21 PLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEED-EVPDITDPFFL   99 (305)
Q Consensus        21 ~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~   99 (305)
                      .....++|+++|+++|+|+||.+||+|.+.++++|++|++.+|++|+|++|.+...+.   +...+.+ ...+.+..+.+
T Consensus       168 ~~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~---~~~~~~~~~~~~~~p~l~~  244 (477)
T KOG3713|consen  168 GGRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGE---GLLVNVEKIESEPHPILTY  244 (477)
T ss_pred             CCChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccc---cccccccccCCCCCCchHH
Confidence            3445679999999999999999999999999999999999999999999986532211   0011101 11234567899


Q ss_pred             hcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCccc-ccccccch
Q psy3171         100 IETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKST-NQAMSLAI  178 (305)
Q Consensus       100 ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~  178 (305)
                      +|.+|.+|||+||++|++.+|+|.+|+|++.|++|+++|+|+|+++.+.....+               +. .......+
T Consensus       245 vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~---------------~~~~l~~~~~v  309 (477)
T KOG3713|consen  245 VETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGE---------------SLKELENAGLV  309 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc---------------hHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999887532210               00 11123478


Q ss_pred             hHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3171         179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFV  225 (305)
Q Consensus       179 LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF~~~~i  225 (305)
                      +|++|++||+||+||+||+.|+|+|+.|+++|...+.++++|++++|
T Consensus       310 vrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI  356 (477)
T KOG3713|consen  310 VRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGI  356 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865555555554443

>KOG2302|consensus

Probab=99.93  E-value=4.4e-26  Score=233.79  Aligned_cols=195  Identities=19%  Similarity=0.296  Sum_probs=169.1

Q ss_pred             hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171          44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL  123 (305)
Q Consensus        44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~  123 (305)
                      +.+.+.+++++|.+|++.+..|.+.+.+                    ..++.+.|.|+.|+.+|..|.++|+++++ .+
T Consensus      1440 Shyld~fit~ii~LnvVtms~ehyqqp~--------------------sldealkycny~ft~vfV~EaV~klvafG-~r 1498 (1956)
T KOG2302|consen 1440 SHYLDQFITFIICLNVVTMSEEHYQQPT--------------------SLDEALKYCNYRFTAVFVLEAVLKLVAFG-ER 1498 (1956)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCcc--------------------cHHHHhhhcceeeeehhHHHHHHHHHHHh-HH
Confidence            5788999999999999999999876532                    47789999999999999999999999997 68


Q ss_pred             cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171         124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL  203 (305)
Q Consensus       124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL  203 (305)
                      +|++|.||.+|+.+|+.+.+++.++.++.++  .+|+              +++++|++|++||.|+|||.+.+.|+|.|
T Consensus      1499 rFfkdrwnqldlaivlls~mgitleeie~na--alpi--------------nptiirimrvlriarvlkllkmatgmral 1562 (1956)
T KOG2302|consen 1499 RFFKDRWNQLDLAIVLLSVMGITLEEIEINA--ALPI--------------NPTIIRIMRVLRIARVLKLLKMATGMRAL 1562 (1956)
T ss_pred             HHHhhhhhhhhHHHHHHHHhcccHhheeecc--cCCC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888765432  2343              68999999999999999999999999999


Q ss_pred             HHHHHHHH--------HHHHHHHHHHHHHHHHhcccceee-----ee----eecccccce-eeeEEeeeccchhhhhhhh
Q psy3171         204 GRECQFIL--------HIIPSSILFRGIFVDRYYKETCII-----VL----RLSKAKVPI-VIFRYLLCNSRYSQVTRVL  265 (305)
Q Consensus       204 l~tl~~sl--------l~i~~~~LF~~~~i~~~~~~~~~~-----~l----~~~~~~~p~-~~~~~~~~~~~~~~~~~~~  265 (305)
                      ++|.++++        +++++||+|++.+++.|-+-.|..     |+    .+.++||++ +.||+.++|+|||+|+|+|
T Consensus      1563 ldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtl 1642 (1956)
T KOG2302|consen 1563 LDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTL 1642 (1956)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhH
Confidence            99999874        688899999999998754445544     66    366699998 9999999999999999999


Q ss_pred             hcccceeeec
Q psy3171         266 RAATHYQVDL  275 (305)
Q Consensus       266 ~~~~~~~~~~  275 (305)
                      |+|+++.-=|
T Consensus      1643 rdc~~e~~cl 1652 (1956)
T KOG2302|consen 1643 RDCTHEESCL 1652 (1956)
T ss_pred             hhcccchhhh
Confidence            9999876433

>KOG4390|consensus

Probab=99.84  E-value=1.6e-22  Score=192.87  Aligned_cols=158  Identities=36%  Similarity=0.610  Sum_probs=128.5

Q ss_pred             ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171          24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL  103 (305)
Q Consensus        24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~  103 (305)
                      ..++|+++|+-+|||+.|-.+-.|-+..-++|.+|+++-++||.|.-..        +|++++-.--..+...+..+|..
T Consensus       164 ~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~--------~~~~~e~pCGEry~~aFFclDTA  235 (632)
T KOG4390|consen  164 GLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGS--------PGRSKELPCGERYPVAFFCLDTA  235 (632)
T ss_pred             cchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCC--------CCCceecccccccceeeEEecce
Confidence            4789999999999999999999999999999999999999999986432        12222110001345578899999


Q ss_pred             ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171         104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR  183 (305)
Q Consensus       104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR  183 (305)
                      |..+||.||+||++++|+|.+|.|+.+.++|.++|+|+|+++++..                     |... ...+--||
T Consensus       236 CVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~---------------------N~DV-SGaFVTLR  293 (632)
T KOG4390|consen  236 CVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTD---------------------NEDV-SGAFVTLR  293 (632)
T ss_pred             eEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecC---------------------Cccc-cceeEEEE
Confidence            9999999999999999999999999999999999999999887531                     1111 12334578


Q ss_pred             HHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171         184 LVRVFRIFKLSRHSKGLQILGRECQFIL  211 (305)
Q Consensus       184 llRIlRILKL~r~~~glrvLl~tl~~sl  211 (305)
                      ++|++||+|..||+.|+|+|+.|++.-.
T Consensus       294 VFRVFRIFKFSRHSQGLRILGYTLKSCA  321 (632)
T KOG4390|consen  294 VFRVFRIFKFSRHSQGLRILGYTLKSCA  321 (632)
T ss_pred             eeeeeeeeeecccccccchhhhhHHHHH
Confidence            8889999999999999999999999643

>KOG2301|consensus

Probab=99.78  E-value=6.7e-19  Score=193.44  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=162.9

Q ss_pred             CCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhh
Q psy3171          19 EKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFF   98 (305)
Q Consensus        19 ~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (305)
                      +.|.|.++.|+++|+++.       ++.|++.++.+|++|.+.++++++++..                    .....+.
T Consensus      1138 ~ipr~~~~~q~~~~~~v~-------~~~F~~~i~~li~ln~i~l~~~~~~qs~--------------------~~~~~l~ 1190 (1592)
T KOG2301|consen 1138 PIPRPRNKLQGLVFDLVT-------SQAFDYLIMLLIFLNTIIMMVETYDQSD--------------------TYTAILT 1190 (1592)
T ss_pred             CCCCCcchhhhHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhhccchH--------------------HHHHHHH
Confidence            445556779999999998       5569999999999999999999987653                    3456899


Q ss_pred             hhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccch
Q psy3171          99 LIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAI  178 (305)
Q Consensus        99 ~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  178 (305)
                      +++.+|+++|++|+++|++|.+ ...||+++||++|+++++.+++..++..+..+                  ...++..
T Consensus      1191 ~in~vft~~Ft~E~vLKiiA~~-~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------------~~~~~~~ 1251 (1592)
T KOG2301|consen 1191 ILNAVFIVLFTIECILKVIALR-FRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------------YESSPTL 1251 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hhHhccccchheEeeeeeHhHHHHHHHHHHHh------------------hccchhh
Confidence            9999999999999999999985 58899999999999999999999887654321                  1134678


Q ss_pred             hHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------cccceeeee--eecccccce
Q psy3171         179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFIL--HIIPSSILFRGIFVDRY--------YKETCIIVL--RLSKAKVPI  246 (305)
Q Consensus       179 LrvLRllRIlRILKL~r~~~glrvLl~tl~~sl--l~i~~~~LF~~~~i~~~--------~~~~~~~~l--~~~~~~~p~  246 (305)
                      .+++|++|++|++|+++..+|+|.|+.|+++|+  +..+++++|+.++|||.        ++.. .+.=  .+...+-.+
T Consensus      1252 ~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~-~i~~~~NF~tf~~a~ 1330 (1592)
T KOG2301|consen 1252 LRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG-GINDHNNFRTFPNSM 1330 (1592)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc-ccCCCcccccchhhe
Confidence            999999999999999999999999999999998  55666677777777662        2222 1100  111133333


Q ss_pred             -eeeEEeeeccchhhhhhhhhccc
Q psy3171         247 -VIFRYLLCNSRYSQVTRVLRAAT  269 (305)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~  269 (305)
                       ..||..++-.|+++|-|++++--
T Consensus      1331 i~LFr~~Tge~W~~im~~~l~s~p 1354 (1592)
T KOG2301|consen 1331 VVLFRCATGEGWNDIMDDCLNSKP 1354 (1592)
T ss_pred             eeeeehhhhhhHHHHHHHHhcCCC
Confidence             69999999999999999988743

>KOG2302|consensus

Probab=99.59  E-value=7.6e-16  Score=159.29  Aligned_cols=196  Identities=18%  Similarity=0.255  Sum_probs=140.9

Q ss_pred             hhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhh-cceehhhhHHHHHHHHhhcC-
Q psy3171          43 AARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLI-ETLCIIWFTFELSVRFLACP-  120 (305)
Q Consensus        43 ~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i-e~~f~~iFtlE~iLRlia~~-  120 (305)
                      .++.|+.+++++|++|++.+++|+..+...                   +.+..+..+ |++|+++|.+|+.+|+++.+ 
T Consensus      1122 ~hk~Fd~vVl~~IfLNcVtialerp~i~~~-------------------s~EriFltlsnyIFtaIfV~Em~lKVVALGl 1182 (1956)
T KOG2302|consen 1122 QHKAFDTVVLFFIFLNCVTIALERPAIVEG-------------------STERIFLTLSNYIFTAIFVVEMTLKVVALGL 1182 (1956)
T ss_pred             HHhhhhheehhhhhhhhHHHHhcccccccC-------------------cceEEEEEecchHHHHHHHHHHHHHHHhhhh
Confidence            357899999999999999999999543321                   223445444 59999999999999999986 


Q ss_pred             --CcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccch
Q psy3171         121 --NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSK  198 (305)
Q Consensus       121 --~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~  198 (305)
                        ....|+++.||++|.+.+..+.+++++.....                  .......++|+||++|.+|+||.+.+.+
T Consensus      1183 ~fge~aYl~ssWN~LDgflv~vsviDilvs~asa------------------~g~kILgVlrvLRlLRtlRpLRviSra~ 1244 (1956)
T KOG2302|consen 1183 YFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASA------------------GGAKILGVLRVLRLLRTLRPLRVISRAP 1244 (1956)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHHHHHHHHhhHHHHHhhcc
Confidence              35789999999999999999999988754321                  1123456889999999999999999999


Q ss_pred             hhHHHHHHHHHHHH--HHH------HHHHHHHHHHHHhc----------------ccceeeee--------eecccccce
Q psy3171         199 GLQILGRECQFILH--IIP------SSILFRGIFVDRYY----------------KETCIIVL--------RLSKAKVPI  246 (305)
Q Consensus       199 glrvLl~tl~~sll--~i~------~~~LF~~~~i~~~~----------------~~~~~~~l--------~~~~~~~p~  246 (305)
                      |++.+..|+..|+.  -++      ++++|.++++..|=                +-.|+-.-        .+-+-|-++
T Consensus      1245 glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqal 1324 (1956)
T KOG2302|consen 1245 GLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQAL 1324 (1956)
T ss_pred             cHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHH
Confidence            99999999999872  122      33344444443322                12243211        111133333


Q ss_pred             -eeeEEeeeccchhhhhhhhhcccceeeec
Q psy3171         247 -VIFRYLLCNSRYSQVTRVLRAATHYQVDL  275 (305)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
                       +.|-.+.-|.|..+|.|-+.+-..+|.++
T Consensus      1325 mSLFvLaSkDgWv~ImyDgldavavdqqPI 1354 (1956)
T KOG2302|consen 1325 MSLFVLASKDGWVNIMYDGLDAVAVDQQPI 1354 (1956)
T ss_pred             HHHHHHhcccchhhhhccchhhceeeeecc
Confidence             57777888999999999888766666554

>KOG1419|consensus

Probab=99.55  E-value=9.8e-15  Score=144.64  Aligned_cols=173  Identities=23%  Similarity=0.408  Sum_probs=133.9

Q ss_pred             hhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhccee
Q psy3171          25 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLC  104 (305)
Q Consensus        25 ~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f  104 (305)
                      .++|.++|+++|.|..-. +-.++++++++++.+++.-.+.|.+++..                   .....+.++|++.
T Consensus        75 Rr~q~~vYN~LERPrGWk-af~YH~~VFllVl~CLILsV~STi~e~~~-------------------~a~~~L~~LEiv~  134 (654)
T KOG1419|consen   75 RRIQNKVYNFLERPRGWK-AFLYHFFVFLLVLSCLILSVLSTIEEYEK-------------------LASGILYILEIVM  134 (654)
T ss_pred             HHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------------HHHHHHHHHHHHH
Confidence            466789999999886421 55678888888888888889999887643                   2467899999999


Q ss_pred             hhhhHHHHHHHHhhcCC---------cccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccc
Q psy3171         105 IIWFTFELSVRFLACPN---------KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMS  175 (305)
Q Consensus       105 ~~iFtlE~iLRlia~~~---------r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~  175 (305)
                      .++|.+||++|+|+++.         |.+|.+.|+.++|+++++.+...+...   .               ++ + ...
T Consensus       135 IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g---~---------------qG-~-vfa  194 (654)
T KOG1419|consen  135 IVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG---S---------------QG-N-VFA  194 (654)
T ss_pred             HHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec---C---------------cc-c-eee
Confidence            99999999999999985         668999999999999988775544321   0               01 1 234


Q ss_pred             cchhHHHHHHHHHHHhhhcccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---------------hcccce
Q psy3171         176 LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQ-------FILHIIPSSILFRGIFVDR---------------YYKETC  233 (305)
Q Consensus       176 ~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~-------~sll~i~~~~LF~~~~i~~---------------~~~~~~  233 (305)
                      .+.+|-+|.+.|+|.+|.-|....++.|+..+-       +++.+-++.++|...++|.               .|++..
T Consensus       195 tSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADAL  274 (654)
T KOG1419|consen  195 TSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADAL  274 (654)
T ss_pred             hhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHH
Confidence            467999999999999999999977777765543       3456677777888887764               588888


Q ss_pred             eeee
Q psy3171         234 IIVL  237 (305)
Q Consensus       234 ~~~l  237 (305)
                      |||.
T Consensus       275 WWG~  278 (654)
T KOG1419|consen  275 WWGV  278 (654)
T ss_pred             Hhhh
Confidence            8854

>KOG2301|consensus

Probab=99.36  E-value=6e-13  Score=147.08  Aligned_cols=190  Identities=22%  Similarity=0.270  Sum_probs=139.4

Q ss_pred             ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171          24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL  103 (305)
Q Consensus        24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~  103 (305)
                      +.++|.++..++-+|       .+...+.+++++|.+.+..+++++.+                    ..+..+.+.|.+
T Consensus       429 ~~~~~~~~~~~v~~~-------~~~~~i~i~i~lnt~~~a~eh~~~~~--------------------~~~~~l~~~~~v  481 (1592)
T KOG2301|consen  429 WLKFKQWLRKMVFDP-------FVILFITICIALNTLFMAMEHYEMTK--------------------ARNYLLYLGNVV  481 (1592)
T ss_pred             HHHHHHHHHHhhhcc-------eehhhhHHHHhhcccEEEEEEeCCcH--------------------HHHHHHHHHHHH
Confidence            456667777777644       47788899999999999999987653                    246678999999


Q ss_pred             ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171         104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR  183 (305)
Q Consensus       104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR  183 (305)
                      |+++|+.|+.+|+++.+ ...||+..||++|.++++...++..                          ...+..+++||
T Consensus       482 F~~lF~~Em~~ki~al~-~~~yF~~~~n~fD~~iv~l~~~~~~--------------------------~~~~~g~svLr  534 (1592)
T KOG2301|consen  482 FTGLFTVEMILKIYALG-PRNYFRRGWNIFDLIIVLLSLLELL--------------------------LKNVYGLSVLR  534 (1592)
T ss_pred             HHHHHHHHHHHHHHHcC-cHHHHhhhcchheEEEEehhhHHhc--------------------------ccchHHHHHHH
Confidence            99999999999999986 7899999999999998882222211                          12345789999


Q ss_pred             HHHHHHHhhhcccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHH------h---cccceeeeeeecccccce-eeeEE
Q psy3171         184 LVRVFRIFKLSRHSKGLQILGRECQFIL--HIIPSSILFRGIFVDR------Y---YKETCIIVLRLSKAKVPI-VIFRY  251 (305)
Q Consensus       184 llRIlRILKL~r~~~glrvLl~tl~~sl--l~i~~~~LF~~~~i~~------~---~~~~~~~~l~~~~~~~p~-~~~~~  251 (305)
                      .+|++||+|++|+++.++.|+..+.+|.  +..+.+++|+.++|.+      |   |+..|-+-.++..+--.+ +.|+ 
T Consensus       535 ~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-  613 (1592)
T KOG2301|consen  535 SFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-  613 (1592)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-
Confidence            9999999999999999999999999886  3444455555555544      1   111122211111111122 4667 


Q ss_pred             eeeccchhhhhhhhhcc
Q psy3171         252 LLCNSRYSQVTRVLRAA  268 (305)
Q Consensus       252 ~~~~~~~~~~~~~~~~~  268 (305)
                      .+|-+|+..|.|+..++
T Consensus       614 lt~e~W~evm~~~~~~~  630 (1592)
T KOG2301|consen  614 ITCEEWTDVMWDCMEAA  630 (1592)
T ss_pred             HcCCchHHHHHHHHHHh
Confidence            88999999999998887

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.97  E-value=8.5e-10  Score=94.60  Aligned_cols=93  Identities=27%  Similarity=0.471  Sum_probs=72.3

Q ss_pred             hhcceehhhhHHHHHHHHhhcCC-cccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccc
Q psy3171          99 LIETLCIIWFTFELSVRFLACPN-KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLA  177 (305)
Q Consensus        99 ~ie~~f~~iFtlE~iLRlia~~~-r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  177 (305)
                      ++|.++.++|++|.++|+++.+- +.+|++++||++|+++++|+++........                    ......
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~   60 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYG--------------------SASAQS   60 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS----------------------HHCH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccc--------------------cccccc
Confidence            57889999999999999999974 389999999999999999998776542110                    000024


Q ss_pred             hhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171         178 ILRVIRLVRVFRIFKLSRHSKGLQILGRECQFIL  211 (305)
Q Consensus       178 ~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sl  211 (305)
                      .+++.|++|.+|++|+.|..+.++.+..++.++.
T Consensus        61 ~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~   94 (200)
T PF00520_consen   61 LLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSF   94 (200)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred             eEEEEEeecccccccccccccccccccccccccc
Confidence            6788888888888888888888888887777654

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=97.75  E-value=3.1e-05  Score=82.80  Aligned_cols=88  Identities=13%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             hccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHH
Q psy3171          35 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSV  114 (305)
Q Consensus        35 le~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iL  114 (305)
                      +-+|.++. -++.+.+++++++.+.+...++..-...                    .....+..+|.++.++|.+|+++
T Consensus        53 ii~P~~~~-~~~Wd~~~~~~~~y~~~~~p~~~~F~~~--------------------~~~~~~~~~d~i~~~~F~iDi~l  111 (823)
T PLN03192         53 IISPMDSR-YRWWETLMVVLVAYSAWVYPFEVAFLNA--------------------SPKRGLEIADNVVDLFFAVDIVL  111 (823)
T ss_pred             EECCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHeeCC--------------------CCCCCeeeHHHHHHHHHHHHHHh
Confidence            33565443 4677888888888877775544321100                    12234678899999999999999


Q ss_pred             HHhhcC----------C----cccccccccceeeehhhhhHHHH
Q psy3171         115 RFLACP----------N----KLNFFRDVMNIIDIIAIIPYFIT  144 (305)
Q Consensus       115 Rlia~~----------~----r~~y~r~~~niiD~l~Vlp~~v~  144 (305)
                      |+..+-          +    .++|++. |.++|+++++|+.+-
T Consensus       112 ~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i  154 (823)
T PLN03192        112 TFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQAL  154 (823)
T ss_pred             heeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHH
Confidence            987761          1    3468765 679999999998653

>PLN03223 Polycystin cation channel protein; Provisional

Probab=97.66  E-value=0.00015  Score=79.30  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             hHHHHHHHHhhc----CCcccccccccceeeehhhhhHHHHHHHHhhhh---hhhc---------cCCC-CCC---CCC-
Q psy3171         108 FTFELSVRFLAC----PNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE---EDVL---------NLPK-APV---SPQ-  166 (305)
Q Consensus       108 FtlE~iLRlia~----~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~---~~~~---------~~p~-~~~---~~~-  166 (305)
                      |+.+=+.++...    ++++.||+++||++|++.++.++..+++.....   ...+         .... +..   +.. 
T Consensus      1189 fIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~p 1268 (1634)
T PLN03223       1189 SVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIP 1268 (1634)
T ss_pred             HHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhccc
Confidence            444444455432    345799999999999999998888776532100   0000         0000 000   000 


Q ss_pred             Ccccc--c-ccc-----------cchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Q psy3171         167 DKSTN--Q-AMS-----------LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIP  215 (305)
Q Consensus       167 ~~~~~--~-~~~-----------~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~  215 (305)
                      ++...  . ..+           ..+.-++-+++++|++|++|..|.++.|..|++.+..-+.
T Consensus      1269 g~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa 1331 (1634)
T PLN03223       1269 NELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLM 1331 (1634)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence            00000  0 000           0122234567889999999999999999999998874333

>KOG1420|consensus

Probab=97.56  E-value=2.7e-05  Score=78.80  Aligned_cols=103  Identities=18%  Similarity=0.316  Sum_probs=74.3

Q ss_pred             HHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhh
Q psy3171          28 QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIW  107 (305)
Q Consensus        28 r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~i  107 (305)
                      |.|.-.++.  ..+..+|+.-+.++++.+-+.++.+++...+.-+ .++              +...+.-..+|..|.++
T Consensus       112 kdwagelis--gqtltgr~lvvlvfilsigsliiyf~das~~~ve-~cq--------------~w~~~~tqqidlafnif  174 (1103)
T KOG1420|consen  112 KDWAGELIS--GQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVE-TCQ--------------NWYKDFTQQIDLAFNIF  174 (1103)
T ss_pred             hhhhcceee--cccccceeeehhHHHHhhhceEEEEEcCCChHHH-hhh--------------hhhhChHHHhhhHhhHH
Confidence            444445554  3345577777766666666666666665432111 011              13455668999999999


Q ss_pred             hHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHH
Q psy3171         108 FTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLAT  147 (305)
Q Consensus       108 FtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l  147 (305)
                      |.+-+.+|++++.+|.-|+...+.++|+..+.|+++.+.+
T Consensus       175 flvyffirfiaasdklwf~lemys~vdfftippsfvsiyl  214 (1103)
T KOG1420|consen  175 FLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYL  214 (1103)
T ss_pred             HHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEe
Confidence            9999999999999999999999999999999999986543

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=96.33  E-value=0.011  Score=58.46  Aligned_cols=111  Identities=13%  Similarity=0.238  Sum_probs=64.9

Q ss_pred             ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhh---hhhccCCCCCCCCCCccccccccc----
Q psy3171         104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE---EDVLNLPKAPVSPQDKSTNQAMSL----  176 (305)
Q Consensus       104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~----  176 (305)
                      +.++|+..-+.++...+  +.|++++||++|+++++.++..+++.....   ++.+.    . ..+  ..+...+.    
T Consensus       220 ~~l~~~~~ei~~i~~~g--~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~----~-~~~--~~~~fv~f~~~a  290 (425)
T PF08016_consen  220 FVLYFLYREIKKIRREG--RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALK----Q-YRE--NPRSFVDFQELA  290 (425)
T ss_pred             HHHHHHHHHHHHHHHhh--hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-hhc--cccccCCHHHHH
Confidence            44556666666666553  889999999999999887776665432110   00000    0 000  00000011    


Q ss_pred             -------chhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3171         177 -------AILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGI  223 (305)
Q Consensus       177 -------~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF~~~  223 (305)
                             .+.-++=.+-.+|++|+.|..+.++.+..|++.+..-+..+++..++
T Consensus       291 ~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i  344 (425)
T PF08016_consen  291 QWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLI  344 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   12222334557888899999999999999999987544444443333

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=95.19  E-value=0.069  Score=57.26  Aligned_cols=105  Identities=11%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             cceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhh------hhhccCCCCCCCCCCccccccc
Q psy3171         101 ETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE------EDVLNLPKAPVSPQDKSTNQAM  174 (305)
Q Consensus       101 e~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~------~~~~~~p~~~~~~~~~~~~~~~  174 (305)
                      =+++.+.|+++-++++.-.+ .++|++++||++|+.++.-+++.+++.....      .....+.         ..+...
T Consensus       472 f~l~~~yf~~~e~~~i~~~~-~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~---------~~~~f~  541 (798)
T KOG3599|consen  472 FLLFVLYFAVAEGLKIWIHR-LGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERA---------SPRTFI  541 (798)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCcccc
Confidence            34456678888888888653 4699999999999999998887766542211      0000000         000011


Q ss_pred             ccc-------hhHH----HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Q psy3171         175 SLA-------ILRV----IRLVRVFRIFKLSRHSKGLQILGRECQFILHIIP  215 (305)
Q Consensus       175 ~~~-------~Lrv----LRllRIlRILKL~r~~~glrvLl~tl~~sll~i~  215 (305)
                      ++.       ..+.    +=.+-.+|++|++|+.+.++.+..|+..++.-+.
T Consensus       542 ~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~  593 (798)
T KOG3599|consen  542 DFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIV  593 (798)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            111       1112    2335578899999999999999999999875444

>KOG0498|consensus

Probab=93.87  E-value=0.098  Score=55.47  Aligned_cols=52  Identities=19%  Similarity=0.554  Sum_probs=40.8

Q ss_pred             CCchhhhhcceehhhhHHHHHHHHhhc---CC-----------cccccccccceeeehhhhhHHHHH
Q psy3171          93 ITDPFFLIETLCIIWFTFELSVRFLAC---PN-----------KLNFFRDVMNIIDIIAIIPYFITL  145 (305)
Q Consensus        93 ~~~~l~~ie~~f~~iFtlE~iLRlia~---~~-----------r~~y~r~~~niiD~l~Vlp~~v~l  145 (305)
                      ...++..+|.+.-++|.+.+++++..+   ++           .++|++ .|-++|+++++|+-.-+
T Consensus       115 ~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~~~i~  180 (727)
T KOG0498|consen  115 LAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPFDQIV  180 (727)
T ss_pred             ccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcChhhhe
Confidence            445678899999999999999998664   21           247898 58899999999986543

>KOG0501|consensus

Probab=91.97  E-value=0.47  Score=49.10  Aligned_cols=53  Identities=19%  Similarity=0.525  Sum_probs=40.4

Q ss_pred             CchhhhhcceehhhhHHHHHHHHhhc---CC----------cccccccccceeeehhhhhHHHHHHH
Q psy3171          94 TDPFFLIETLCIIWFTFELSVRFLAC---PN----------KLNFFRDVMNIIDIIAIIPYFITLAT  147 (305)
Q Consensus        94 ~~~l~~ie~~f~~iFtlE~iLRlia~---~~----------r~~y~r~~~niiD~l~Vlp~~v~l~l  147 (305)
                      ...+..+|.+.-++|.++++|.+-..   |.          |..|+|+ |-++|+++-+|+=+--++
T Consensus       248 ~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF  313 (971)
T KOG0501|consen  248 NVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAF  313 (971)
T ss_pred             ceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHh
Confidence            44567888889999999999986432   11          6689987 679999999998765444

>KOG3713|consensus

Probab=88.02  E-value=2.2  Score=43.18  Aligned_cols=52  Identities=23%  Similarity=0.437  Sum_probs=39.3

Q ss_pred             cchhHHHHHHHHHHHhhhcccchhh-HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy3171         176 LAILRVIRLVRVFRIFKLSRHSKGL-QILGRECQFI----LHIIPSSILFRGIFVDR  227 (305)
Q Consensus       176 ~~~LrvLRllRIlRILKL~r~~~gl-rvLl~tl~~s----ll~i~~~~LF~~~~i~~  227 (305)
                      .+++|++|++||+++-|.....+.+ .+|=++.+..    +.+..++++|..+++++
T Consensus       310 vrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~  366 (477)
T KOG3713|consen  310 VRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFA  366 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999888776 4455555543    24566778888888865

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=87.20  E-value=3.4  Score=43.83  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=30.8

Q ss_pred             hhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHH
Q psy3171          98 FLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLA  146 (305)
Q Consensus        98 ~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~  146 (305)
                      .++.......|..+-...++..+ ...|+++.||++|++.+..++..++
T Consensus       392 e~~~~~~~~~~~~~e~~~~~~~g-~~~y~~~~wn~~d~~~~~~~~~~~~  439 (743)
T TIGR00870       392 EMLIVTWVDGLRLGEEKLIWLGG-IFEYIHQLWNILDFGMNSFYLATFL  439 (743)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455566555566553 5689999999999977665555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=83.34  E-value=4.1  Score=34.20  Aligned_cols=27  Identities=7%  Similarity=0.049  Sum_probs=18.3

Q ss_pred             CCchhhhhcceehhhhHHHHHHHHhhc
Q psy3171          93 ITDPFFLIETLCIIWFTFELSVRFLAC  119 (305)
Q Consensus        93 ~~~~l~~ie~~f~~iFtlE~iLRlia~  119 (305)
                      ..+++.++|.+......++++++....
T Consensus        29 ~~~~~~~~d~~~~~~~~~~~~~~~~~~   55 (200)
T PF00520_consen   29 FRSWWNWFDFISVIPSIVSVILRSYGS   55 (200)
T ss_dssp             CCSHHHHHHHHHHHHHCCHHCCHCSS-
T ss_pred             hcChhhccccccccccccccccccccc
Confidence            455777888887777777777665443

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3614|consensus

Probab=81.12  E-value=5.7  Score=44.74  Aligned_cols=46  Identities=20%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             ehhhhHHHHHHHHhhcCC------cccccccccceeeehhhhhHHHHHHHHh
Q psy3171         104 CIIWFTFELSVRFLACPN------KLNFFRDVMNIIDIIAIIPYFITLATVV  149 (305)
Q Consensus       104 f~~iFtlE~iLRlia~~~------r~~y~r~~~niiD~l~Vlp~~v~l~l~~  149 (305)
                      -..-+++|-+=+++...+      -.-||.+.||++|.+++.-+.++.++..
T Consensus       831 ~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl  882 (1381)
T KOG3614|consen  831 WIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRL  882 (1381)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEe
Confidence            334455666544444322      1249999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
2a79_B	499	Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu		2e-40
3lut_B	499	A Structural Model For The Full-Length Shaker Potas		8e-40
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		1e-33
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		4e-33

>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186
Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +N T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245
Query: 121 NKLNFFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAXX 179
           +K  FF ++MN            TL T +AE+            P+D +   QAMSLA  
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293
Query: 180 XXXXXXXXXXXXKLSRHSKGLQILGR 205
                       KLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct: 127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186
Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +  T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 187 IFRDENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 245
Query: 121 NKLNFFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQD-KSTNQAMSLAXX 179
           +K  FF ++MN            TL T +AE+            P+D +   QAMSLA  
Sbjct: 246 SKAGFFTNIMNIIDIVAIIPYFITLGTELAEK------------PEDAQQGQQAMSLAIL 293
Query: 180 XXXXXXXXXXXXKLSRHSKGLQILGR 205
                       KLSRHSKGLQILG+
Sbjct: 294 RVIRLVRVFRIFKLSRHSKGLQILGQ 319

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 105/206 (50%), Gaps = 26/206 (12%)
Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct: 146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 205
Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +  T I   +    TDPFF++ETLCIIWF+FE  VRF ACP
Sbjct: 206 IFRDENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACP 264
Query: 121 NKLNFFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXX 180
           +K  FF ++MN            T+                 ++  +KS  Q  ++    
Sbjct: 265 SKAGFFTNIMNIIDIVAIIPYYVTIF----------------LTESNKSVLQFQNVRRVV 308
Query: 181 XX-XXXXXXXXXKLSRHSKGLQILGR 205
                       KLSRHSKGLQILG+
Sbjct: 309 QIFRIMRILRIFKLSRHSKGLQILGQ 334

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 105/206 (50%), Gaps = 26/206 (12%)
Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct: 146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 205
Query: 69  EFKHYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACP 120
            F+            F+T +  T I   +    TDPFF++ETLCIIW++FE  VRF ACP
Sbjct: 206 IFRDENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWWSFEFLVRFFACP 264
Query: 121 NKLNFFRDVMNXXXXXXXXXXXXTLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAXXX 180
           +K  FF ++MN            T+                 ++  +KS  Q  ++    
Sbjct: 265 SKAGFFTNIMNIIDIVAIIPYYVTIF----------------LTESNKSVLQFQNVRRVV 308
Query: 181 XX-XXXXXXXXXKLSRHSKGLQILGR 205
                       KLSRHSKGLQILG+
Sbjct: 309 QIFRIMRILRIFKLSRHSKGLQILGQ 334

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	9e-67
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	3e-33
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	4e-29
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	1e-12
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	3e-11
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2a9h_A	155	Voltage-gated potassium channel; potassium channel	8e-05
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	6e-04
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	8e-04

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score =  216 bits (551), Expect = 9e-67
 Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 22/204 (10%)

Query: 9   REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
           REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP
Sbjct: 146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 205

Query: 69  EFKHYK-------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPN 121
            F+          V   T + + I   +    TDPFF++ETLCIIWF+FE  VRF ACP+
Sbjct: 206 IFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPS 265

Query: 122 KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRV 181
           K  FF ++MNIIDI+AIIPY++T+    + +                         ++++
Sbjct: 266 KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKS---------------VLQFQNVRRVVQI 310

Query: 182 IRLVRVFRIFKLSRHSKGLQILGR 205
            R++R+ RIFKLSRHSKGLQILG+
Sbjct: 311 FRIMRILRIFKLSRHSKGLQILGQ 334

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score =  124 bits (312), Expect = 3e-33
 Identities = 18/168 (10%), Positives = 40/168 (23%), Gaps = 50/168 (29%)

Query: 39  ESSQAARVVAIISVFVILLSIVIFCLETLPEFK-HYKVFNTTTNGTKIEEDEVPDITDPF 97
                 R+ A ++  +    ++     T+P+     ++                      
Sbjct: 2   SVLPFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLA--------------------L 41

Query: 98  FLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLN 157
             +  +    +  +L+   L     +   R     ID++A++                  
Sbjct: 42  AALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFL----------- 90

Query: 158 LPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
                             L       L     + K  R S    +LGR
Sbjct: 91  ------------------LDGSPDWSLYCAVWLLKPLRDSTFFPVLGR 120

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score =  110 bits (276), Expect = 4e-29
 Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 53/175 (30%)

Query: 31  VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEV 90
           +  + E+P          +   +  LLS+++  +E   +                     
Sbjct: 1   IGDVMEHPLVE-------LGVSYAALLSVIVVVVECTMQLS------------------- 34

Query: 91  PDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVA 150
            +     +L++ + +I    + + R     +   + +    + +I A++P  +       
Sbjct: 35  GEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI--- 89

Query: 151 EEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
                                    LA L + RLVR+ R  ++            
Sbjct: 90  ----------------------EGHLAGLGLFRLVRLLRFLRILLIISRGSKFLS 122

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147

 Score = 63.4 bits (154), Expect = 1e-12
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 53/175 (30%)

Query: 29  RKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEED 88
           R +  + E+P         A++SV V+++   +                           
Sbjct: 12  RNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSG----------------------- 48

Query: 89  EVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATV 148
              +     +L++ + +I    + + R     +   + +    + +I A++P  +     
Sbjct: 49  ---EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLA--- 100

Query: 149 VAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203
                                      LA L + RLVR+ R  ++          
Sbjct: 101 ----------------------LIEGHLAGLGLFRLVRLLRFLRILLIISRGSKF 133

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Length = 132

 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 46/147 (31%)

Query: 49  IISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWF 108
           +   +  LLS+++  +E   +                      +     +L++ + +I  
Sbjct: 10  LGVSYAALLSVIVVVVEYTMQLS-------------------GEYLVRLYLVDLILVIIL 50

Query: 109 TFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDK 168
             + + R     +   + +    + +I A++P  +                         
Sbjct: 51  WADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI--------------------- 87

Query: 169 STNQAMSLAILRVIRLVRVFRIFKLSR 195
                  LA L + RLVR+ R  ++  
Sbjct: 88  ----EGHLAGLGLFRLVRLLRFLRILL 110

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 48/152 (31%)

Query: 52  VFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFE 111
           V +I+L+ V+    T                     +  P   +   L++    I+F  E
Sbjct: 19  VSIIILNAVLIGATT--------------------YELDPLFLETIHLLDYGITIFFVIE 58

Query: 112 LSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTN 171
           + +RF+    K +FF+   NI D + +    I +                          
Sbjct: 59  ILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIP------------------------- 93

Query: 172 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203
              + +   V+RL+R+FR+ +L      L+ +
Sbjct: 94  ---NNSSFLVLRLLRIFRVLRLISVIPELKQI 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 91/320 (28%)

Query: 11  DEGFIKEEEKP-LPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPE 69
           D   +++  K  L   E       +    ++      +              + L +  E
Sbjct: 34  DCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRL-------------FWTLLSKQE 76

Query: 70  FKHYKVFNTTTNGTKIEEDEVPDITDPFFL--IETLCIIWFTFELSVRFLACPNKLNFFR 127
            +  + F        +EE    +    F +  I+T         ++  ++   ++L  + 
Sbjct: 77  -EMVQKF--------VEEVLRINY--KFLMSPIKTEQRQ--PSMMTRMYIEQRDRL--YN 121

Query: 128 DVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKA--PVSPQDKSTNQAM------SLAI- 178
           D            Y       V+  +  L L +A   + P        +       +A+ 
Sbjct: 122 DNQ------VFAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 179 -LRVIRLVRV--FRIF--KLSRHSKGLQILGRECQFILHI-------------IPSSI-- 218
                ++     F+IF   L   +    +L    + +  I             I   I  
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 219 ---LFRGIFVDRYYKETCIIVLR-LSKAKVPIVIF----RYLLCNSRYSQVTRVLRAATH 270
                R +   + Y+  C++VL  +  AK     F    + LL  +R+ QVT  L AAT 
Sbjct: 230 IQAELRRLLKSKPYEN-CLLVLLNVQNAKA-WNAFNLSCKILL-TTRFKQVTDFLSAATT 286

Query: 271 YQVDLRGTPDQVDLTGTPDQ 290
             + L    D   +T TPD+
Sbjct: 287 THISL----DHHSMTLTPDE 302

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 175 SLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
            +  +    L R+ ++  L RH   L    R       ++   +L           E
Sbjct: 23  HMPPMLSGLLARLVKLL-LGRHGSALH--WRAAGAATVLLVIVLLAGSYLA--VLAE 74

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
           +    L R+ ++  L RH   LQ   R       ++   +L           E
Sbjct: 10  MLSGLLARLVKLL-LGRHGSALQ--WRAAGAATVLLVIVLLAGSYLA--VLAE 57

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 176 LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
           +A +    L R+ ++  L RH   L    R       ++   +L           E
Sbjct: 1   MAPMLSGLLARLVKLL-LGRHGSALH--WRAAGAATVLLVIVLLAGSYLA--VLAE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.94
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	99.87
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.83
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.82
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	99.76
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.64
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.57
2a9h_A	155	Voltage-gated potassium channel; potassium channel	95.48
2lcm_A	28	Voltage-dependent N-type calcium channel subunit;	95.16
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	93.86
1qg9_A	26	Protein (sodium channel protein, brain II alpha su	88.95
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	86.6
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	83.99
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	82.03

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.94  E-value=2.7e-27  Score=237.04  Aligned_cols=188  Identities=56%  Similarity=0.987  Sum_probs=147.4

Q ss_pred             cccCCCccccCCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccc-------cC
Q psy3171           9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTT-------TN   81 (305)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~-------~~   81 (305)
                      +|+|+..++++.+.|++++|+++|.++++|.+|..|++|+++++++|++|+++++++|.|+.+.......+       .+
T Consensus       146 ~~~e~~~~~~~~~~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~  225 (514)
T 2r9r_B          146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYS  225 (514)
T ss_dssp             HHHTTCCCCCCCCCCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHH
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence            45677877788889999999999999999999999999999999999999999999999875431000000       00


Q ss_pred             CCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCC
Q psy3171          82 GTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKA  161 (305)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~  161 (305)
                      +.....+.......++.++|.+|+++|++|+++|++++++|++|++++||++|+++++|+++.++......         
T Consensus       226 ~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~---------  296 (514)
T 2r9r_B          226 QSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNK---------  296 (514)
T ss_dssp             HHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSC---------
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccc---------
Confidence            00000011123567889999999999999999999999999999999999999999999999887532110         


Q ss_pred             CCCCCCccccc-ccccchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q psy3171         162 PVSPQDKSTNQ-AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILH  212 (305)
Q Consensus       162 ~~~~~~~~~~~-~~~~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll  212 (305)
                             +.+. ......+|++|++|++|++|+.|++++++.+..++++++.
T Consensus       297 -------~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~  341 (514)
T 2r9r_B          297 -------SVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMR  341 (514)
T ss_dssp             -------SHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHH
T ss_pred             -------cchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence                   0000 0114679999999999999999999999999999998763

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=99.87  E-value=2.5e-23  Score=173.28  Aligned_cols=124  Identities=15%  Similarity=0.200  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171          44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL  123 (305)
Q Consensus        44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~  123 (305)
                      ++.|+..++++|++|++.+++||.++.+.                   +.++.+.++|++|+++|++||++|++++++|+
T Consensus         5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~-------------------~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~   65 (132)
T 1ors_C            5 HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA   65 (132)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhchhhhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            67899999999999999999999876532                   23456889999999999999999999999999


Q ss_pred             cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171         124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL  203 (305)
Q Consensus       124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL  203 (305)
                      +|++  ||++|+++++|+++++...                         ...+.+|++|++|++|++|+.|+++|++.+
T Consensus        66 ~y~~--~niiDllailp~~~~~~~~-------------------------~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l  118 (132)
T 1ors_C           66 GYVK--KTLYEIPALVPAGLLALIE-------------------------GHLAGLGLFRLVRLLRFLRILLIISRGSKF  118 (132)
T ss_dssp             TTTT--TCGGGTGGGSCHHHHHHHH-------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHhc-------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999  9999999999999887641                         024678999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy3171         204 GRECQFILHI  213 (305)
Q Consensus       204 l~tl~~sll~  213 (305)
                      +.++++|...
T Consensus       119 ~~~l~~s~~~  128 (132)
T 1ors_C          119 LSAIADAADK  128 (132)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.83  E-value=5.6e-23  Score=184.38  Aligned_cols=174  Identities=20%  Similarity=0.304  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171          44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL  123 (305)
Q Consensus        44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~  123 (305)
                      +++|+..+.++|++|++.+++|+++..+                    +.++.+.++|.+|+++|++|+++|++++|+++
T Consensus        11 ~~~f~~~i~~~I~ln~i~l~~~~~~~~~--------------------~~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~   70 (229)
T 4dxw_A           11 NRIFQFTVVSIIILNAVLIGATTYELDP--------------------LFLETIHLLDYGITIFFVIEILIRFIGEKQKA   70 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTTCCSSSCH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CchHHHHHHHHHHHHHHHHHHccCCCCh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchh
Confidence            6789999999999999999999976422                    24567899999999999999999999998889


Q ss_pred             cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171         124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL  203 (305)
Q Consensus       124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL  203 (305)
                      +|++++||++|++++++++++..                            ....++++|++|++|++|+.|+++++|.+
T Consensus        71 ~y~~~~wni~D~~~v~~~~i~~~----------------------------~~~~~~~lr~~RilR~lrl~~~~~~l~~l  122 (229)
T 4dxw_A           71 DFFKSGWNIFDTVIVAISLIPIP----------------------------NNSSFLVLRLLRIFRVLRLISVIPELKQI  122 (229)
T ss_dssp             ----CHHHHHHHHHHHHTTCC------------------------------------CCTTHHHHHHTTHHHHCHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHhhcC----------------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999988765331                            11346778899999999999999999999


Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHH-----hcccceeeeeeecccccce-eeeEEeeeccchhhhhhhhhc
Q psy3171         204 GRECQFILHII--PSSILFRGIFVDR-----YYKETCIIVLRLSKAKVPI-VIFRYLLCNSRYSQVTRVLRA  267 (305)
Q Consensus       204 l~tl~~sll~i--~~~~LF~~~~i~~-----~~~~~~~~~l~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~  267 (305)
                      ..++.++...+  .+++++..+++++     .+++.--.  .....+-.+ +.|+++++++|...|.|+.++
T Consensus       123 ~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~--~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~  192 (229)
T 4dxw_A          123 IEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPS--RWGDLGISLITLFQVLTLSSWETVMLPMQEI  192 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCT--TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--cccCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence            99999987432  2223333333322     22221100  122222233 688999999999999987764

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.82  E-value=4.2e-21  Score=177.44  Aligned_cols=130  Identities=18%  Similarity=0.336  Sum_probs=111.3

Q ss_pred             ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171          24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL  103 (305)
Q Consensus        24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~  103 (305)
                      ++.+|+++|.+++       +++|+.++.++|++|++.+++++.++...                   +....+.++|.+
T Consensus        16 ~~~~r~~~~~i~~-------~~~f~~~i~~li~l~~i~~~~~~~~~~~~-------------------~~~~~l~~~e~~   69 (285)
T 3rvy_A           16 GSHMYLRITNIVE-------SSFFTKFIIYLIVLNGITMGLETSKTFMQ-------------------SFGVYTTLFNQI   69 (285)
T ss_dssp             ---CHHHHHHHHT-------SHHHHHHHHHHHHHHHHHHHHTTCTTHHH-------------------HSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHc-------CHHHHHHHHHHHHHHHHHHHHhcCcccch-------------------HHHHHHHHHHHH
Confidence            3458999999998       56899999999999999999999874331                   245678999999


Q ss_pred             ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171         104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR  183 (305)
Q Consensus       104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR  183 (305)
                      |+++|++|+++|++++|  ++|++++||++|+++++|++++.                              ...++++|
T Consensus        70 ~~~iF~~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~------------------------------~~~~~~lr  117 (285)
T 3rvy_A           70 VITIFTIEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPT------------------------------SSGFEILR  117 (285)
T ss_dssp             HHHHHHHHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCS------------------------------SSSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcc------------------------------cchHHHHH
Confidence            99999999999999997  78999999999999999887521                              11367899


Q ss_pred             HHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171         184 LVRVFRIFKLSRHSKGLQILGRECQFIL  211 (305)
Q Consensus       184 llRIlRILKL~r~~~glrvLl~tl~~sl  211 (305)
                      ++|++|++|+.|+++++|.+..++..+.
T Consensus       118 ~~RilR~lrl~~~~~~l~~l~~~l~~~~  145 (285)
T 3rvy_A          118 VLRVLRLFRLVTAVPQMRKIVSALISVI  145 (285)
T ss_dssp             HHGGGGGGHHHHSSTTHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999885

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=99.76  E-value=2.1e-19  Score=152.50  Aligned_cols=136  Identities=15%  Similarity=0.186  Sum_probs=115.1

Q ss_pred             CChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcc
Q psy3171          23 PSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  102 (305)
Q Consensus        23 ~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~  102 (305)
                      ..+++|+++|+++|       ++.++..+.++|++|++.+++|+.++.+.                   +..+.+..+|.
T Consensus         6 ~~~~~~~~~~~~~e-------~~~f~~~i~~lil~sv~~v~~et~~~i~~-------------------~~~~~~~~id~   59 (147)
T 2kyh_A            6 DLGGRVRNIGDVME-------HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDL   59 (147)
T ss_dssp             CCSHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh-------CchHHHHHHHHHHHHHHHHHHHHhHhhch-------------------hHHHHHHHHHH
Confidence            35679999999999       45799999999999999999999875432                   13456889999


Q ss_pred             eehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHH
Q psy3171         103 LCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVI  182 (305)
Q Consensus       103 ~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvL  182 (305)
                      +++++|++||++|++++++|++|+++  |++|+++++|++..+..+                         ...+++|++
T Consensus        60 ~~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~-------------------------~~lr~lRvl  112 (147)
T 2kyh_A           60 ILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE-------------------------GHLAGLGLF  112 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH-------------------------HHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH-------------------------hHHHHHHHH
Confidence            99999999999999999999999998  999999999999876541                         124678899


Q ss_pred             HHHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171         183 RLVRVFRIFKLSRHSKGLQILGRECQFIL  211 (305)
Q Consensus       183 RllRIlRILKL~r~~~glrvLl~tl~~sl  211 (305)
                      |++|++|++|+.|+.+-.+.+..+++.-.
T Consensus       113 RllRv~Rllrl~r~~~~~~~l~~al~~f~  141 (147)
T 2kyh_A          113 RLVRLLRFLRILLIISRGSKFLSAIADAA  141 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888887544

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.64  E-value=1.8e-16  Score=141.18  Aligned_cols=124  Identities=18%  Similarity=0.307  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171          44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL  123 (305)
Q Consensus        44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~  123 (305)
                      ++.++.+++++|++|++.+++|+.++.+.                   +..+.+.++|.++.++|++|+++|++++++|+
T Consensus         7 ~~~f~~~i~~lil~~~~~~~~~~~~~~~~-------------------~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~   67 (223)
T 1orq_C            7 HPLVELGVSYAALLSVIVVVVECTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA   67 (223)
T ss_dssp             SHHHHTHHHHHHHHHHHHHHHHHHHHHTT-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcccCh-------------------hhhhHHHHHHHHHHHHHHHHHHHHHcccccHH
Confidence            45799999999999999999998765431                   35678999999999999999999999999999


Q ss_pred             cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcc-cchhhHH
Q psy3171         124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSR-HSKGLQI  202 (305)
Q Consensus       124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r-~~~glrv  202 (305)
                      +|+|+  |++|+++++|+++...... +.                     .....+|++|++|++|++|+.+ ..+..+.
T Consensus        68 ~y~~~--~iiDllailP~~~~~~~~~-~~---------------------~~~~~lr~lRllRllR~~r~~~~~~~~~~~  123 (223)
T 1orq_C           68 GYVKK--TLYEIPALVPAGLLALIEG-HL---------------------AGLGLFRLVRLLRFLRILLIISRGSKFLSA  123 (223)
T ss_dssp             HHHHH--HHHHCTTHHHHHHHHHHHH-HH---------------------HTTTCHHHHHHHHHHHHHHHHHSCSSHHHH
T ss_pred             HHHHH--hHHHHHHHHHHHHHHHHhc-ch---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998  9999999999997654210 00                     0123566777777777777666 3345667


Q ss_pred             HHHHHHHH
Q psy3171         203 LGRECQFI  210 (305)
Q Consensus       203 Ll~tl~~s  210 (305)
                      +..+++.+
T Consensus       124 l~~~~~~~  131 (223)
T 1orq_C          124 IADAADKI  131 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.57  E-value=1.6e-16  Score=150.57  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171          44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL  123 (305)
Q Consensus        44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~  123 (305)
                      ++.|+.+++++|++|+++++++|.|+.+.                   +....+++++.++..+|++|+++|+++++++.
T Consensus         7 s~~f~~~~~~~i~ls~~~~~~~t~~~~~~-------------------~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~   67 (355)
T 3beh_A            7 LRIYAPLNAVLAAPGLLAVAALTIPDMSG-------------------RSRLALAALLAVIWGAYLLQLAATLLKRRAGV   67 (355)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHTSSSCCH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccchhh-------------------hHHHHHHHHHhHHHHHHHHHHHHhcccccccc
Confidence            45789999999999999999999886532                   12335677788888889999999999998888


Q ss_pred             cccccccceeeehhh-hhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHH
Q psy3171         124 NFFRDVMNIIDIIAI-IPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQI  202 (305)
Q Consensus       124 ~y~r~~~niiD~l~V-lp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrv  202 (305)
                      .|++++||++|++++ +|++..+.                              ..+|.+|++|++|++|+.|++++++.
T Consensus        68 ~~~~~~~~i~Dl~~i~~p~~~~~~------------------------------~~~~~~r~lr~~R~lrl~r~~~~~~~  117 (355)
T 3beh_A           68 VRDRTPKIAIDVLAVLVPLAAFLL------------------------------DGSPDWSLYCAVWLLKPLRDSTFFPV  117 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHS------------------------------CCSGGGGGGGGGGGSHHHHTCSSHHH
T ss_pred             eeccCcchHHHHHHHHHHHHHHHh------------------------------ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999 57765321                              01356778888888888899999999


Q ss_pred             HHHHHHHHH
Q psy3171         203 LGRECQFIL  211 (305)
Q Consensus       203 Ll~tl~~sl  211 (305)
                      +..+++.+.
T Consensus       118 l~~~l~~~~  126 (355)
T 3beh_A          118 LGRVLANEA  126 (355)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHH
Confidence            999987653

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=95.48  E-value=0.01  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=1.3

Q ss_pred             hhHHHHHHHHHHHhhhcccchhhH
Q psy3171         178 ILRVIRLVRVFRIFKLSRHSKGLQ  201 (305)
Q Consensus       178 ~LrvLRllRIlRILKL~r~~~glr  201 (305)
                      .+|++|++|++|++ +.|+...++
T Consensus        26 ~lr~lRllRi~ril-l~r~~~~l~   48 (155)
T 2a9h_A           26 PMLSGLLARLVKLL-LGRHGSALH   48 (155)
T ss_dssp             ---------------------CCH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHH
Confidence            35677777788877 777744443

>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}

Probab=95.16  E-value=0.0064  Score=36.87  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             chhHHHHHHHHHHHhhhcccchhhH
Q psy3171         177 AILRVIRLVRVFRIFKLSRHSKGLQ  201 (305)
Q Consensus       177 ~~LrvLRllRIlRILKL~r~~~glr  201 (305)
                      ..++++|.+|++|.+|.+..++|++
T Consensus         4 ~~l~~lrtlR~LRpLr~isr~~gmk   28 (28)
T 2lcm_A            4 NTIKSLRVLRVLRPLKTIKRLPKLK   28 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred             chhhHHHHHHHhcchHHHhhcccCC
Confidence            4688999999999999999998874

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=93.86  E-value=0.041  Score=44.16  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHhhhccc
Q psy3171         178 ILRVIRLVRVFRIFKLSRH  196 (305)
Q Consensus       178 ~LrvLRllRIlRILKL~r~  196 (305)
                      .+|++|++|++|++ +.|+
T Consensus         3 ~lr~lRl~Ri~ri~-L~R~   20 (122)
T 2ih3_C            3 PMLSGLLARLVKLL-LGRH   20 (122)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHH-HHHh
Confidence            57889999999999 8887

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=86.60  E-value=1.2  Score=38.31  Aligned_cols=32  Identities=16%  Similarity=0.118  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q psy3171         181 VIRLVRVFRIFKLSRHSKGLQILGRECQFILH  212 (305)
Q Consensus       181 vLRllRIlRILKL~r~~~glrvLl~tl~~sll  212 (305)
                      ++|++|++|++|+.|..+..+...+.+..++.
T Consensus        98 ~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~  129 (223)
T 1orq_C           98 LFRLVRLLRFLRILLIISRGSKFLSAIADAAD  129 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555444434444444444443

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=83.99  E-value=0.98  Score=39.19  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHhhhcccchh-hHHHHHHHHH
Q psy3171         179 LRVIRLVRVFRIFKLSRHSKG-LQILGRECQF  209 (305)
Q Consensus       179 LrvLRllRIlRILKL~r~~~g-lrvLl~tl~~  209 (305)
                      +|.+|++|++|++|..+..+- .+++.+++..
T Consensus       101 lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~  132 (229)
T 4dxw_A          101 LRLLRIFRVLRLISVIPELKQIIEAILESVRR  132 (229)
T ss_dssp             CTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            455555555555555555544 3566666654

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=82.03  E-value=1.1  Score=40.11  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHHHHhhhcccchhh-HHHHHHHHH
Q psy3171         178 ILRVIRLVRVFRIFKLSRHSKGL-QILGRECQF  209 (305)
Q Consensus       178 ~LrvLRllRIlRILKL~r~~~gl-rvLl~tl~~  209 (305)
                      ++|++|++|++|++|..+..+-+ +.+..++..
T Consensus       115 ~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~  147 (285)
T 3rvy_A          115 ILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG  147 (285)
T ss_dssp             HHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666665553 555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1orsc_	132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	2e-10

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 46/161 (28%)

Query: 45  RVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLC 104
            +V +   +  LLS+++  +E   +                            +L++ + 
Sbjct: 6   PLVELGVSYAALLSVIVVVVEYTMQLSGE-------------------YLVRLYLVDLIL 46

Query: 105 IIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVS 164
           +I    + + R     +   + +    + +I A++P  +                     
Sbjct: 47  VIILWADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLAL------------------ 86

Query: 165 PQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
                      LA L + RLVR+ R  ++            
Sbjct: 87  -------IEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLS 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.8
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	81.25

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.80  E-value=5.2e-21  Score=157.53  Aligned_cols=123  Identities=15%  Similarity=0.204  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCccc
Q psy3171          45 RVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN  124 (305)
Q Consensus        45 ~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~~  124 (305)
                      ..++..++++|++|++.+++||+++...                   +....+.++|.+++++|++||++|++++|+++.
T Consensus         6 p~~e~~i~~lillnvi~~~let~~~~~~-------------------~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~~~~   66 (132)
T d1orsc_           6 PLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPAG   66 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccch-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhCCccce
Confidence            4799999999999999999999876431                   345678999999999999999999999998887


Q ss_pred             ccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHHH
Q psy3171         125 FFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILG  204 (305)
Q Consensus       125 y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvLl  204 (305)
                      |++  ||++|+++++|++......                         ...+.+|++|++|++|++|+.|..++++.++
T Consensus        67 ~~~--~~~iDl~ai~p~~~~~~~~-------------------------~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll  119 (132)
T d1orsc_          67 YVK--KTLYEIPALVPAGLLALIE-------------------------GHLAGLGLFRLVRLLRFLRILLIISRGSKFL  119 (132)
T ss_dssp             TTT--TCGGGTGGGSCHHHHHHHH-------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCC--cchHHHHHHHHHHHHHhhh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775  5999999999999876542                         1345789999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy3171         205 RECQFILHI  213 (305)
Q Consensus       205 ~tl~~sll~  213 (305)
                      .++.+|...
T Consensus       120 ~ai~~s~~~  128 (132)
T d1orsc_         120 SAIADAADK  128 (132)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988743

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.25  E-value=0.43  Score=36.66  Aligned_cols=30  Identities=20%  Similarity=0.512  Sum_probs=15.0

Q ss_pred             chhHHHHHHHHHHHhhhcccchhh-HHHHHH
Q psy3171         177 AILRVIRLVRVFRIFKLSRHSKGL-QILGRE  206 (305)
Q Consensus       177 ~~LrvLRllRIlRILKL~r~~~gl-rvLl~t  206 (305)
                      +.+|++|++|++|++|..+....+ +.+.++
T Consensus        95 r~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s  125 (132)
T d1orsc_          95 GLFRLVRLLRFLRILLIISRGSKFLSAIADA  125 (132)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555554332 344443