Psyllid ID: psy3175

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MDTRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLWPVS
cccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccccEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEcccccccEEccccEEEccccccccccccccccccHHHHHHHcHHHHcccccHEEEEEEcccccc
MDTRLQKAIGGRKVAERNADYAEITRkvqfpmgrtlnshdyvfwcgdfnyridMDKDELKELLKHDLLDDVLKFDQLRIQqdqglvfkgfteghisfpptykydlfsddydtsekarapawtdrmsvpppflfrsngtwnncyirrlwpvs
mdtrlqkaiggrkvaernadyaeitrkvqfpmgrtlnshDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARapawtdrmsvpppflfrsngtwnncyirrlwpvs
MDTRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIdmdkdelkellkhdllddvlkFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLWPVS
******************ADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDT****RAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLWP**
MDTRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLW***
*************VAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLWPVS
**********GRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLW***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIRRLWPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query151 2.2.26 [Sep-21-2011]
O43426 1573 Synaptojanin-1 OS=Homo sa yes N/A 0.781 0.075 0.627 2e-40
Q62910 1574 Synaptojanin-1 OS=Rattus yes N/A 0.781 0.074 0.610 6e-40
Q8CHC4 1574 Synaptojanin-1 OS=Mus mus yes N/A 0.781 0.074 0.610 6e-40
O18964 1324 Synaptojanin-1 (Fragment) yes N/A 0.781 0.089 0.618 7e-40
O15056 1496 Synaptojanin-2 OS=Homo sa no N/A 0.768 0.077 0.577 6e-34
O55207 1496 Synaptojanin-2 OS=Rattus no N/A 0.768 0.077 0.560 5e-33
Q9D2G5 1434 Synaptojanin-2 OS=Mus mus no N/A 0.768 0.080 0.551 7e-33
P50942 1183 Polyphosphatidylinositol yes N/A 0.781 0.099 0.462 4e-27
Q9USQ6889 Inositol-1,4,5-trisphosph yes N/A 0.854 0.145 0.409 4e-26
Q8K337 993 Type II inositol 1,4,5-tr no N/A 0.721 0.109 0.482 5e-25
>sp|O43426|SYNJ1_HUMAN Synaptojanin-1 OS=Homo sapiens GN=SYNJ1 PE=1 SV=2 Back     alignment and function desciption
 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 90/118 (76%)

Query: 8   AIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDL 67
           A G  +V ERN D+ EI RK+ FPMGR L SHDYVFWCGDFNYRID+  +E+KEL++   
Sbjct: 691 AAGQSQVKERNEDFIEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQN 750

Query: 68  LDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
            D ++  DQL  Q++ G VF+GF EG ++F PTYKYDLFSDDYDTSEK R PAWTDR+
Sbjct: 751 WDSLIAGDQLINQKNAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRV 808
Inositol 5-phosphatase which has a role in clathrin-mediated endocytosis.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6
>sp|Q62910|SYNJ1_RAT Synaptojanin-1 OS=Rattus norvegicus GN=Synj1 PE=1 SV=3 Back     alignment and function description
>sp|Q8CHC4|SYNJ1_MOUSE Synaptojanin-1 OS=Mus musculus GN=Synj1 PE=1 SV=3 Back     alignment and function description
>sp|O18964|SYNJ1_BOVIN Synaptojanin-1 (Fragment) OS=Bos taurus GN=SYNJ1 PE=1 SV=2 Back     alignment and function description
>sp|O15056|SYNJ2_HUMAN Synaptojanin-2 OS=Homo sapiens GN=SYNJ2 PE=1 SV=3 Back     alignment and function description
>sp|O55207|SYNJ2_RAT Synaptojanin-2 OS=Rattus norvegicus GN=Synj2 PE=1 SV=2 Back     alignment and function description
>sp|Q9D2G5|SYNJ2_MOUSE Synaptojanin-2 OS=Mus musculus GN=Synj2 PE=2 SV=2 Back     alignment and function description
>sp|P50942|INP52_YEAST Polyphosphatidylinositol phosphatase INP52 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=INP52 PE=1 SV=1 Back     alignment and function description
>sp|Q9USQ6|SYJ2_SCHPO Inositol-1,4,5-trisphosphate 5-phosphatase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syj2 PE=2 SV=1 Back     alignment and function description
>sp|Q8K337|I5P2_MOUSE Type II inositol 1,4,5-trisphosphate 5-phosphatase OS=Mus musculus GN=Inpp5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
345491863 1113 PREDICTED: synaptojanin-1-like [Nasonia 0.781 0.106 0.754 7e-50
307194526 1172 Synaptojanin-1 [Harpegnathos saltator] 0.781 0.100 0.762 2e-49
383864943 1152 PREDICTED: synaptojanin-1-like [Megachil 0.781 0.102 0.737 3e-49
332023175 1157 Synaptojanin-1 [Acromyrmex echinatior] 0.781 0.101 0.754 5e-49
242018917 1179 synaptojanin-1, putative [Pediculus huma 0.781 0.100 0.771 1e-48
170031984 1236 synaptojanin [Culex quinquefasciatus] gi 0.781 0.095 0.762 2e-48
157129237 1186 synaptojanin [Aedes aegypti] gi|10887226 0.781 0.099 0.754 4e-48
322789041 1157 hypothetical protein SINV_10499 [Solenop 0.781 0.101 0.728 7e-48
158300438 1263 AGAP012175-PA [Anopheles gambiae str. PE 0.774 0.092 0.768 1e-47
307182606 1158 Synaptojanin-1 [Camponotus floridanus] 0.781 0.101 0.728 1e-47
>gi|345491863|ref|XP_001607775.2| PREDICTED: synaptojanin-1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 106/118 (89%)

Query: 8   AIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDL 67
           A G  +V ERNADYAEITRKV FPMGRTLN+HDYVFWCGDFNYR+DMDK+++KEL++ + 
Sbjct: 690 AAGQSQVNERNADYAEITRKVAFPMGRTLNAHDYVFWCGDFNYRVDMDKEDMKELIRRNE 749

Query: 68  LDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
           LD++L++DQLR+QQDQG VFK F+EG I+FPPTYKYDLFSDDYDTSEK R PAWTDR+
Sbjct: 750 LDEILQYDQLRVQQDQGNVFKNFSEGPITFPPTYKYDLFSDDYDTSEKCRQPAWTDRV 807

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307194526|gb|EFN76818.1| Synaptojanin-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383864943|ref|XP_003707937.1| PREDICTED: synaptojanin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332023175|gb|EGI63431.1| Synaptojanin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242018917|ref|XP_002429915.1| synaptojanin-1, putative [Pediculus humanus corporis] gi|212514961|gb|EEB17177.1| synaptojanin-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170031984|ref|XP_001843863.1| synaptojanin [Culex quinquefasciatus] gi|167871443|gb|EDS34826.1| synaptojanin [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157129237|ref|XP_001655326.1| synaptojanin [Aedes aegypti] gi|108872261|gb|EAT36486.1| AAEL011417-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|322789041|gb|EFZ14499.1| hypothetical protein SINV_10499 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|158300438|ref|XP_320360.4| AGAP012175-PA [Anopheles gambiae str. PEST] gi|157013159|gb|EAA00566.4| AGAP012175-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307182606|gb|EFN69777.1| Synaptojanin-1 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
FB|FBgn0034691 1218 synj "synaptojanin" [Drosophil 0.781 0.096 0.644 4.4e-35
UNIPROTKB|F1SHM3 1579 SYNJ1 "Uncharacterized protein 0.781 0.074 0.567 3.5e-31
UNIPROTKB|E2RQN0 1265 SYNJ1 "Uncharacterized protein 0.781 0.093 0.567 6.8e-31
UNIPROTKB|C9JFZ1 1350 SYNJ1 "Synaptojanin-1" [Homo s 0.781 0.087 0.576 7.6e-31
UNIPROTKB|E1BD68 1210 SYNJ1 "Synaptojanin-1" [Bos ta 0.781 0.097 0.567 8.1e-31
ZFIN|ZDB-GENE-030131-9180 1558 synj1 "synaptojanin 1" [Danio 0.781 0.075 0.576 8.8e-31
UNIPROTKB|J3KPK1 1526 SYNJ1 "Synaptojanin-1" [Homo s 0.781 0.077 0.576 9.1e-31
UNIPROTKB|F1MC12 1300 SYNJ1 "Synaptojanin-1" [Bos ta 0.781 0.090 0.567 9.1e-31
UNIPROTKB|J9JHK8 1563 SYNJ1 "Uncharacterized protein 0.781 0.075 0.567 9.4e-31
UNIPROTKB|O43426 1573 SYNJ1 "Synaptojanin-1" [Homo s 0.781 0.075 0.576 9.5e-31
FB|FBgn0034691 synj "synaptojanin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 392 (143.0 bits), Expect = 4.4e-35, P = 4.4e-35
 Identities = 76/118 (64%), Positives = 83/118 (70%)

Query:     8 AIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXX 67
             A G  +VAERNADYAEITRK+ FPMGRTL SHD+VFWCGDFNYRI               
Sbjct:   701 AAGQSQVAERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKDELKECVRNGD 760

Query:    68 XXXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
                   FDQLR +Q+ G VF  F EG I+F PTYKYDLFSDDYDTSEK RAPAWTDR+
Sbjct:   761 LSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFSDDYDTSEKQRAPAWTDRV 818
GO:0048488 "synaptic vesicle endocytosis" evidence=IMP;TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0004445 "inositol-polyphosphate 5-phosphatase activity" evidence=IDA
GO:0016311 "dephosphorylation" evidence=NAS
GO:0046030 "inositol trisphosphate phosphatase activity" evidence=NAS
GO:0043195 "terminal bouton" evidence=IDA
GO:0012506 "vesicle membrane" evidence=IDA
GO:0046854 "phosphatidylinositol phosphorylation" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0048790 "maintenance of presynaptic active zone structure" evidence=IMP
GO:0050803 "regulation of synapse structure and activity" evidence=IMP
UNIPROTKB|F1SHM3 SYNJ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQN0 SYNJ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9JFZ1 SYNJ1 "Synaptojanin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BD68 SYNJ1 "Synaptojanin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9180 synj1 "synaptojanin 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J3KPK1 SYNJ1 "Synaptojanin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC12 SYNJ1 "Synaptojanin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHK8 SYNJ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43426 SYNJ1 "Synaptojanin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O43426SYNJ1_HUMAN3, ., 1, ., 3, ., 3, 60.62710.78140.0750yesN/A
Q62910SYNJ1_RAT3, ., 1, ., 3, ., 3, 60.61010.78140.0749yesN/A
Q8CHC4SYNJ1_MOUSE3, ., 1, ., 3, ., 3, 60.61010.78140.0749yesN/A
O18964SYNJ1_BOVIN3, ., 1, ., 3, ., 3, 60.61860.78140.0891yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
cd09089328 cd09089, INPP5c_Synj, Catalytic inositol polyphosp 5e-71
cd09098336 cd09098, INPP5c_Synj1, Catalytic inositol polyphos 3e-52
cd09074299 cd09074, INPP5c, Catalytic domain of inositol poly 2e-48
cd09090291 cd09090, INPP5c_ScInp51p-like, Catalytic inositol 5e-48
cd09093292 cd09093, INPP5c_INPP5B, Catalytic inositol polypho 4e-47
smart00128306 smart00128, IPPc, Inositol polyphosphate phosphata 1e-46
cd09099336 cd09099, INPP5c_Synj2, Catalytic inositol polyphos 3e-45
cd09095298 cd09095, INPP5c_INPP5E-like, Catalytic inositol po 4e-34
COG5411 460 COG5411, COG5411, Phosphatidylinositol 5-phosphate 8e-33
cd09094300 cd09094, INPP5c_INPP5J-like, Catalytic inositol po 2e-32
PLN03191621 PLN03191, PLN03191, Type I inositol-1,4,5-trisphos 9e-28
cd09101304 cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol p 1e-21
cd09091307 cd09091, INPP5c_SHIP, Catalytic inositol polyphosp 3e-17
cd09100307 cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol p 3e-14
cd09092383 cd09092, INPP5A, Type I inositol polyphosphate 5-p 1e-04
>gnl|CDD|197323 cd09089, INPP5c_Synj, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanins Back     alignment and domain information 
 Score =  216 bits (551), Expect = 5e-71
 Identities = 80/117 (68%), Positives = 93/117 (79%)

Query: 8   AIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDL 67
           A G  +V ERN D+AEI RK+ FPMGRTL+SHDYVFWCGDFNYRID+  DE+KEL+++  
Sbjct: 160 AAGQSQVKERNEDFAEIARKLSFPMGRTLDSHDYVFWCGDFNYRIDLPNDEVKELVRNGD 219

Query: 68  LDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
              +L+FDQL  Q+  G VFKGF EG I+F PTYKYDLFSDDYDTSEK R PAWTDR
Sbjct: 220 WLKLLEFDQLTKQKAAGNVFKGFLEGEINFAPTYKYDLFSDDYDTSEKCRTPAWTDR 276

This subfamily contains the INPP5c domains of two human synaptojanins, synaptojanin 1 (Synj1) and synaptojanin 2 (Synj2), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs). They belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj1 occurs as two main isoforms: a brain enriched 145 KDa protein (Synj1-145) and a ubiquitously expressed 170KDa protein (Synj1-170). Synj1-145 participates in clathrin-mediated endocytosis. The primary substrate of the Synj1-145 INPP5c domain is PI(4,5)P2, which it converts to PI4P. Synj1-145 may work with membrane curvature sensors/generators (such as endophilin) to remove PI(4,5)P2 from curved membranes. The recruitment of the INPP5c domain of Synj1-145 to endophilin-induced membranes leads to a fragmentation and condensation of these structures. The PI(4,5)P2 to PI4P conversion may cooperate with dynamin to produce membrane fission. In addition to this INPP5c domain, Synjs contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Synj2 can hydrolyze phosphatidylinositol diphosphate (PIP2) to phosphatidylinositol phosphate (PIP). Synj2 occurs as multiple alternative splice variants in various tissues. These variants share the INPP5c domain and the Sac1 domain. Synj2A is recruited to the mitochondria via its interaction with OMP25 (a mitochondrial outer membrane protein). Synj2B is found at nerve terminals in the brain and at the spermatid manchette in testis. Synj2B undergoes further alternative splicing to give 2B1 and 2B2. In clathrin-mediated endocytosis, Synj2 participates in the formation of clathrin-coated pits, and perhaps also in vesicle decoating. Rac1 GTPase regulates the intracellular localization of Synj2 forms, but not Synj1. Synj2 may contribute to the role of Rac1 in cell migration and invasion, and is a potential target for therapeutic intervention in malignant tumors. Length = 328
>gnl|CDD|197332 cd09098, INPP5c_Synj1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1 Back     alignment and domain information
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate 5-phosphatases Back     alignment and domain information
>gnl|CDD|197324 cd09090, INPP5c_ScInp51p-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Saccharomyces cerevisiae Inp51p, Inp52p, and Inp53p, and related proteins Back     alignment and domain information
>gnl|CDD|197327 cd09093, INPP5c_INPP5B, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins Back     alignment and domain information
>gnl|CDD|214525 smart00128, IPPc, Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2 Back     alignment and domain information
>gnl|CDD|197329 cd09095, INPP5c_INPP5E-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Inositol polyphosphate-5-phosphatase E and related proteins Back     alignment and domain information
>gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|197328 cd09094, INPP5c_INPP5J-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of inositol polyphosphate 5-phosphatase J and related proteins Back     alignment and domain information
>gnl|CDD|215624 PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>gnl|CDD|197335 cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol 5-phosphatase-2 and related proteins Back     alignment and domain information
>gnl|CDD|197325 cd09091, INPP5c_SHIP, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and -2, and related proteins Back     alignment and domain information
>gnl|CDD|197334 cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and related proteins Back     alignment and domain information
>gnl|CDD|197326 cd09092, INPP5A, Type I inositol polyphosphate 5-phosphatase I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 151
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 100.0
KOG0566|consensus 1080 100.0
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 100.0
COG5411 460 Phosphatidylinositol 5-phosphate phosphatase [Sign 100.0
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 99.92
KOG1976|consensus391 99.69
KOG0565|consensus145 99.45
COG3568259 ElsH Metal-dependent hydrolase [General function p 97.51
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 97.4
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 97.26
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 96.65
PTZ00297 1452 pantothenate kinase; Provisional 94.5
PRK13911250 exodeoxyribonuclease III; Provisional 94.28
PRK05421263 hypothetical protein; Provisional 93.47
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 93.2
PRK11756268 exonuclease III; Provisional 91.25
KOG2756|consensus349 87.23
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 85.97
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 82.6
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information 
Probab=100.00  E-value=1.7e-53  Score=354.87  Aligned_cols=145  Identities=41%  Similarity=0.700  Sum_probs=133.5

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--CCCCCeEEEeCccccccCCCH-HHHHHHHhccchHHHhhhhhhHH
Q psy3175           3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRT--LNSHDYVFWCGDFNYRIDMDK-DELKELLKHDLLDDVLKFDQLRI   79 (151)
Q Consensus         3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~--~~~~d~vfw~GDlNyRi~~~~-~~v~~~i~~~~~~~Ll~~DQL~~   79 (151)
                      |||||+||+.++++||+||.+|++.+.|+....  +.++||+||||||||||++.. ++|.++|+.++|..||++|||..
T Consensus       143 v~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~  222 (310)
T smart00128      143 VNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNR  222 (310)
T ss_pred             EeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHH
Confidence            689999999999999999999999999875433  468999999999999999887 89999999999999999999999


Q ss_pred             hhhcCcccCCCeecccccCCCCCCC-CCCCCCCCCCCccCCCCCCcccCCCCcccCC--------CCCCCcccccccccC
Q psy3175          80 QQDQGLVFKGFTEGHISFPPTYKYD-LFSDDYDTSEKARAPAWTDRMSVPPPFLFRS--------NGTWNNCYIRRLWPV  150 (151)
Q Consensus        80 ~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~--------~~~~~~~~~~~~~pv  150 (151)
                      +++++.+|.||.|++|+|||||||+ .+++.|++++|+|+||||||||    |++..        ..+.+++.+||||||
T Consensus       223 ~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd~~~k~R~PsWcDRIL----~~~~~~~~~~~~~Y~s~~~~~~SDHkPV  298 (310)
T smart00128      223 QKEAGKVFKGFQEGPITFPPTYKYDSVGTETYDTSEKKRVPAWCDRIL----YRSNGPNLIQLSEYHSGMELTTSDHKPV  298 (310)
T ss_pred             HhhcccccCcCccCCcCCCCCeeecCCCCccccCcccccCcchhheeh----hhccCCCceecccccCCCccCCcCcccc
Confidence            9999999999999999999999999 9999999999999999999999    88521        346788999999999


Q ss_pred             C
Q psy3175         151 S  151 (151)
Q Consensus       151 ~  151 (151)
                      +
T Consensus       299 ~  299 (310)
T smart00128      299 F  299 (310)
T ss_pred             c
Confidence            5

Mg(2+)-dependent/Li(+)-sensitive enzymes.
>KOG0566|consensus Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>KOG1976|consensus Back     alignment and domain information
>KOG0565|consensus Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>KOG2756|consensus Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
3n9v_A313 Crystal Structure Of Inpp5b Length = 313 2e-21
3mtc_A313 Crystal Structure Of Inpp5b In Complex With Phospha 2e-21
1i9y_A347 Crystal Structure Of Inositol Polyphosphate 5-Phosp 2e-21
2xsw_A357 Crystal Structure Of Human Inpp5e Length = 357 1e-12
3nr8_B316 Crystal Structure Of Human Ship2 Length = 316 3e-11
1ntf_A282 Crystal Structure Of Cimex Nitrophorin Length = 282 3e-10
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b Length = 313 Back     alignment and structure 
Iteration: 1

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 17  RNADYAEITRKVQF--------PMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXXX 68
           RN DY +I  ++QF        P+  T+++HD + W GD NYRI                
Sbjct: 151 RNQDYKDICSRMQFCQPDPSLPPL--TISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 208
Query: 69  -XXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
                 +DQL+IQ     VF+GFTEG ++F PTYKYD  SDD+DTSEK RAPAW DR+
Sbjct: 209 FQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRI 266
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With Phosphatidylinositol 4- Phosphate Length = 313 Back     alignment and structure
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase Domain (Ipp5c) Of Spsynaptojanin Length = 347 Back     alignment and structure
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e Length = 357 Back     alignment and structure
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2 Length = 316 Back     alignment and structure
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 1e-52
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 6e-50
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 2e-48
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 9e-47
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 1e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Length = 347 Back     alignment and structure
 Score =  169 bits (429), Expect = 1e-52
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query: 10  GGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
           G     ER+ DY  I   ++F  GR++ +HDYV W GDFNYRI +  +E+   +    L 
Sbjct: 170 GYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLS 229

Query: 70  DVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
            + ++DQL  Q   G VF  F+E  I+FPPTYK+D+ +D YDTS+K R PAWTDR
Sbjct: 230 YLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDR 284
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Length = 316 Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Length = 313 Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Length = 357 Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 100.0
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 100.0
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 100.0
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 100.0
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 100.0
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 98.15
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 97.93
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 97.93
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 97.57
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 97.53
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 97.47
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 97.18
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 97.17
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 97.08
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 96.82
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 96.58
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 96.38
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 95.06
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 94.53
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 93.28
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 93.23
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 91.44
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 91.36
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 90.29
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 90.1
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 88.45
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 87.39
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 82.22
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
Probab=100.00  E-value=4.7e-57  Score=375.76  Aligned_cols=145  Identities=40%  Similarity=0.662  Sum_probs=135.4

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcCCCCC------CCCCCCCeEEEeCccccccC-CCHHHHHHHHhccchHHHhhhh
Q psy3175           3 TRLQKAIGGRKVAERNADYAEITRKVQFPMG------RTLNSHDYVFWCGDFNYRID-MDKDELKELLKHDLLDDVLKFD   75 (151)
Q Consensus         3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~------~~~~~~d~vfw~GDlNyRi~-~~~~~v~~~i~~~~~~~Ll~~D   75 (151)
                      ||||||||++++++||+||.+|++++.|+..      ..+.+||+|||+|||||||+ ++.++|.++|++++|..||++|
T Consensus       140 VnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~D  219 (313)
T 3mtc_A          140 VNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYD  219 (313)
T ss_dssp             EEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTB
T ss_pred             EeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhH
Confidence            7999999999999999999999999998642      35789999999999999996 8999999999999999999999


Q ss_pred             hhHHhhhcCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCCC-----CCCCcccccccccC
Q psy3175          76 QLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSN-----GTWNNCYIRRLWPV  150 (151)
Q Consensus        76 QL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~~-----~~~~~~~~~~~~pv  150 (151)
                      ||+.+|+++.+|.||.|++|+|||||||+.+++.||+++|+|+||||||||    |++.+-     .+++++++||||||
T Consensus       220 QL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL----~~~~~i~~~~Y~s~~~~~~SDHrPV  295 (313)
T 3mtc_A          220 QLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRIL----WKGKNITQLSYQSHMALKTSDHKPV  295 (313)
T ss_dssp             HHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEE----EEESSEEEEEEEECTTCCSSSSCCE
T ss_pred             HHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEecccccceEE----EecCCeEEEeeeeccCccCCCccCe
Confidence            999999999999999999999999999999999999999999999999999    997642     35688999999999


Q ss_pred             C
Q psy3175         151 S  151 (151)
Q Consensus       151 ~  151 (151)
                      +
T Consensus       296 ~  296 (313)
T 3mtc_A          296 S  296 (313)
T ss_dssp             E
T ss_pred             E
Confidence            5
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 151
d1i9za_345 d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission 6e-36
d2imqx1280 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( 3e-15
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Inositol polyphosphate 5-phosphatase (IPP5)
domain: Synaptojanin, IPP5C domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  124 bits (312), Expect = 6e-36
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query: 10  GGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
           G     ER+ DY  I   ++F  GR++ +HDYV W GDFNYRI +  +E+   +    L 
Sbjct: 170 GYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLS 229

Query: 70  DVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
            + ++DQL  Q   G VF  F+E  I+FPPTYK+D+ +D YDTS+K R PAWTDR
Sbjct: 230 YLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDR 284
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 100.0
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.9
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 97.96
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 97.86
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 97.58
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 92.23
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 92.14
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Inositol polyphosphate 5-phosphatase (IPP5)
domain: Synaptojanin, IPP5C domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.2e-48  Score=324.76  Aligned_cols=144  Identities=39%  Similarity=0.644  Sum_probs=134.5

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhhhhhHHhhh
Q psy3175           3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQD   82 (151)
Q Consensus         3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~   82 (151)
                      |||||+||+++..+|++++..|++.+.|..+..+..+|++||+||||||++++..++.+++..+++..|+++|||..++.
T Consensus       163 vn~HL~ag~~~~~~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~R~~~~~~~~~~~i~~~~~~~l~~~dql~~~~~  242 (345)
T d1i9za_         163 ITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQML  242 (345)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHH
T ss_pred             EEecccCcccchHHHHHHHHHHHHhhccccccccccCceeEEeccccccccCchhhhHhhhhccchhHHHHHHHHHhhhh
Confidence            79999999999999999999999999998778889999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCC----CCCCCcccccccccCC
Q psy3175          83 QGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRS----NGTWNNCYIRRLWPVS  151 (151)
Q Consensus        83 ~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~----~~~~~~~~~~~~~pv~  151 (151)
                      ++.+|.||.|++|+|+|||||+.+++.|+++.++|+||||||||    |++.-    ..++ ++++|||+||+
T Consensus       243 ~~~~~~~~~E~~I~F~PTyk~~~~~~~yd~~~k~RiPsWcDRIL----~~~~~~~~~Y~s~-~~~~SDH~PV~  310 (345)
T d1i9za_         243 TGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRIL----YRGELVPHSYQSV-PLYYSDHRPIY  310 (345)
T ss_dssp             TTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEE----EESSCEEEEEEEC-CCCSSSBCCEE
T ss_pred             ccCcccCcccCCCCCCCCCeEECCCCccCCCCCeeCccccceEE----eeCceeeeeeecc-CCCCCCcccEE
Confidence            99999999999999999999999999999999999999999999    76542    2234 57789999994
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure