Psyllid ID: psy3181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLGE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEccccccccEEcEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEccccccccccEEEEEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccEEEcEEEEEccccccccccHHccccHHHHHHHHccccccccccccccccccHHccccccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHcccccEEEEEEEEEEccccccccccccccEEEEEEccEEEEccccccccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEccHHHccccccccEEEccccccccccEEEEEEEEEcccHHHHHHHHHHcHHHccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEccEcccccEEEEEEEEEccccHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
flrpnnslsnhnsnhqtdLDQQTALALQNELAGAYStassliqnpvgrlNITVVQAKLVKNyglvtkmdpyvrlrvghcvyethtdpsggkfprwnkevfcllpqgvTSIYLEIYDECSFTMDELIAWakipipssvmkgethedwfplsgkqgedkegMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLgalpsdflrpnnsplsnhnsnhltdLDQQTALALQNELAGAYStagsliqnpvgrlnITVVQILSIGrylvptyqivsgayyrssrseqevCSCKFLALIKLDILdtylfsankpipllkkfkiRTRSLFLQIFgidkvrhsryvpllge
Flexible Loop (DISEMBL)
flrpnnslsnhnsnhqTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNyglvtkmdpyvRLRVGHCVYEThtdpsggkfprWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGsliqnpvgrLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSankpipllkkfkiRTRSLFLQifgidkvrhsryvpllge
Low Complexity Region (SEG)
FLRPnnslsnhnsnhQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSffffllllENSISYLEITKHPLYAAKVFLGALPSDFLRpnnsplsnhnsnhlTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLGE
Disordered region (IsUnstruct)
**************************LQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS******KEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFL*********************TALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPL***
Disordered Region (DISOPRED)
FLR*****************************************PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTD*SGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFF************************************************************************LIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLG*
Disordered Region (DISEMBL)
FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYY********VCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLGE
Disordered Region (DISPRO)
F****NSLSNHNS**QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLALIKLDILDTYLFSANKPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9H0E2	274	Toll-interacting protein	yes	N/A	0.504	0.642	0.467	2e-43
A2RUW1	274	Toll-interacting protein	yes	N/A	0.495	0.631	0.459	2e-41
Q9QZ06	274	Toll-interacting protein	yes	N/A	0.495	0.631	0.459	2e-41
Q5ZK05	274	Toll-interacting protein	yes	N/A	0.349	0.445	0.617	1e-40
Q2LGB5	273	Toll-interacting protein	yes	N/A	0.415	0.531	0.506	2e-40
Q6INE3	269	Toll-interacting protein	N/A	N/A	0.349	0.453	0.609	4e-40
Q6DFR0	269	Toll-interacting protein	yes	N/A	0.366	0.475	0.589	4e-40
Q3B8H2	269	Toll-interacting protein	N/A	N/A	0.366	0.475	0.589	4e-40
Q4LBC7	275	Toll-interacting protein	N/A	N/A	0.512	0.650	0.429	3e-39
B5X370	275	Toll-interacting protein	N/A	N/A	0.512	0.650	0.429	3e-39

>sp|Q9H0E2|TOLIP_HUMAN Toll-interacting protein OS=Homo sapiens GN=TOLLIP PE=1 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 120/201 (59%), Gaps = 25/201 (12%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVK 60
           FLR    ++      Q  LD Q A  LQ    GA  T        VGRLNITVVQAKL K
Sbjct: 21  FLR----ITPTQQQRQVQLDAQAAQQLQ--YGGAVGT--------VGRLNITVVQAKLAK 66

Query: 61  NYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF 120
           NYG+ T+MDPY RLR+G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F
Sbjct: 67  NYGM-TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIFDERAF 125

Query: 121 TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV----------S 170
           +MD+ IAW  I IP S+ +G+  + W+ LSG+QG+DKEGMINLV+SY +           
Sbjct: 126 SMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMVMPPQP 185

Query: 171 FFFFLLLLENSISYLEITKHP 191
                 + +  + Y+ IT  P
Sbjct: 186 VVLMPTVYQQGVGYVPITGMP 206

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Recruits IRAK1 to the IL-1 receptor complex. Inhibits IRAK1 phosphorylation and kinase activity.
Homo sapiens (taxid: 9606)

>sp|A2RUW1|TOLIP_RAT Toll-interacting protein OS=Rattus norvegicus GN=Tollip PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 114/187 (60%), Gaps = 14/187 (7%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+ITVVQAKL KNYG+ T+MDPY RLR+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VGRLSITVVQAKLAKNYGM-TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  I IP S+ +G+  ++W+ LSG+QG+DKEGMINLV+
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEWYSLSGRQGDDKEGMINLVM 170

Query: 166 SYTV----------SFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLS 215
           SYT                  + +  + Y+ I   P   +    G +P     P  +P  
Sbjct: 171 SYTSLPAAMMMPPQPVVLMPTVYQQGVGYVPIAGMPAVCSP---GMVPMAMPPPAVAPQP 227

Query: 216 NHNSNHL 222
             N   L
Sbjct: 228 RCNEEDL 234

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Recruits IRAK1 to the IL-1 receptor complex. Inhibits IRAK1 phosphorylation and kinase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9QZ06|TOLIP_MOUSE Toll-interacting protein OS=Mus musculus GN=Tollip PE=1 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 114/187 (60%), Gaps = 14/187 (7%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+ITVVQAKL KNYG+ T+MDPY RLR+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VGRLSITVVQAKLAKNYGM-TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  I IP S+ +G+  ++W+ LSG+QG+DKEGMINLV+
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEWYSLSGRQGDDKEGMINLVM 170

Query: 166 SYTV----------SFFFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLS 215
           SYT                  + +  + Y+ I   P   +    G +P     P  +P  
Sbjct: 171 SYTSLPAAMMMPPQPVVLMPTVYQQGVGYVPIAGMPAVCSP---GMVPMAMPPPAVAPQP 227

Query: 216 NHNSNHL 222
             N   L
Sbjct: 228 RCNEEDL 234

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Recruits IRAK1 to the IL-1 receptor complex. Inhibits IRAK1 phosphorylation and kinase activity.

Mus musculus (taxid: 10090)

>sp|Q5ZK05|TOLIP_CHICK Toll-interacting protein OS=Gallus gallus GN=TOLLIP PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 97/123 (78%), Gaps = 1/123 (0%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VGRLSITVVQAKLAKNYGM-TRMDPYCRIRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  I IP S+ +G   ++W+ LSG+QG+DKEGMINLV+
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHITIPESLKQGNVEDEWYSLSGRQGDDKEGMINLVM 170

Query: 166 SYT 168
           SYT
Sbjct: 171 SYT 173

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Gallus gallus (taxid: 9031)

>sp|Q2LGB5|TOLIP_BOVIN Toll-interacting protein OS=Bos taurus GN=TOLLIP PE=2 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 11/156 (7%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL++TVVQAKL KNYG+ T+MDPY RLR+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VGRLSVTVVQAKLAKNYGM-TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  + IP ++ +G+  ++W+ LSG+QG+DKEGMINLVL
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHVTIPEALKQGKVVDEWYSLSGRQGDDKEGMINLVL 170

Query: 166 SYTV----------SFFFFLLLLENSISYLEITKHP 191
           SYT                  + +  + Y+ IT  P
Sbjct: 171 SYTSLPAAMMMPPQPVVLMPTVYQQGVGYVPITGMP 206

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Recruits IRAK1 to the IL-1 receptor complex. Inhibits IRAK1 phosphorylation and kinase activity.

Bos taurus (taxid: 9913)

>sp|Q6INE3|TOIPB_XENLA Toll-interacting protein B OS=Xenopus laevis GN=tollip-b PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 98/123 (79%), Gaps = 1/123 (0%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           +GRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  MGRLSITVVQAKLAKNYGM-TRMDPYCRIRLGYAVYETPTAHNGAKNPRWNKVIQCTIPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S Y+EI+DE +F+MD+ IAW  I IP ++ +G+  ++WF LSGKQG+DKEGMINLV+
Sbjct: 111 GVDSFYIEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEWFSLSGKQGDDKEGMINLVM 170

Query: 166 SYT 168
           SYT
Sbjct: 171 SYT 173

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Xenopus laevis (taxid: 8355)

>sp|Q6DFR0|TOLIP_XENTR Toll-interacting protein OS=Xenopus tropicalis GN=tollip PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 40  SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEV 99
           S +   +GRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK +
Sbjct: 46  SGVMGTMGRLSITVVQAKLAKNYGM-TRMDPYCRIRLGYAVYETPTAHNGAKNPRWNKVI 104

Query: 100 FCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
            C +P GV S YLEI+DE +F+MD+ IAW  I IP ++ +G+  ++WF LSG+QG+DKEG
Sbjct: 105 QCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEWFSLSGRQGDDKEG 164

Query: 160 MINLVLSYT 168
           MINLV+SYT
Sbjct: 165 MINLVMSYT 173

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Xenopus tropicalis (taxid: 8364)

>sp|Q3B8H2|TOIPA_XENLA Toll-interacting protein A OS=Xenopus laevis GN=tollip-a PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 40  SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEV 99
           S +   +GRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK +
Sbjct: 46  SGVMGTMGRLSITVVQAKLAKNYGM-TRMDPYCRIRLGYAVYETPTAHNGAKNPRWNKVI 104

Query: 100 FCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
            C +P GV S YLEI+DE +F+MD+ IAW  I IP ++ +G+  ++WF LSG+QG+DKEG
Sbjct: 105 QCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEWFSLSGRQGDDKEG 164

Query: 160 MINLVLSYT 168
           MINLV+SYT
Sbjct: 165 MINLVMSYT 173

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Xenopus laevis (taxid: 8355)

>sp|Q4LBC7|TOIPB_ONCMY Toll-interacting protein B OS=Oncorhynchus mykiss GN=tollipb PE=2 SV=1

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 115/191 (60%), Gaps = 12/191 (6%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           V RL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VRRLSITVVQAKLAKNYGM-TRMDPYCRVRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  + IP  + +G   ++W+ LSG+QG+DKEGMINLV+
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHVTIPEGLREGSVVDEWYSLSGRQGDDKEGMINLVM 170

Query: 166 SY---------TVSFFFFLLLLENSISYLEITKHPLY--AAKVFLGALPSDFLRPNNSPL 214
           SY         +        + +  + Y+ I   P       V +G   +  + P  +P 
Sbjct: 171 SYANMTAGMHMSPPVVLMPTVYQQGVGYIPIAGVPTVYNQGMVPMGMPAAPTVAPQEAPC 230

Query: 215 SNHNSNHLTDL 225
           S  +   L D+
Sbjct: 231 SEEDLKALQDM 241

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Oncorhynchus mykiss (taxid: 8022)

>sp|B5X370|TOLIP_SALSA Toll-interacting protein OS=Salmo salar GN=tollip PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 115/191 (60%), Gaps = 12/191 (6%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T  +G K PRWNK + C +P 
Sbjct: 52  VGRLSITVVQAKLAKNYGM-TRMDPYCRVRLGYAVYETPTAHNGAKNPRWNKVIQCTVPP 110

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV S YLEI+DE +F+MD+ IAW  + IP  + +G   ++W+ LSG+QG+DKEGMINLV+
Sbjct: 111 GVDSFYLEIFDERAFSMDDRIAWTHVTIPEGLREGSVVDEWYSLSGRQGDDKEGMINLVM 170

Query: 166 SY---------TVSFFFFLLLLENSISYLEITKHPLY--AAKVFLGALPSDFLRPNNSPL 214
           SY         +        + +  + Y+ I   P       V +G   +  +    +P 
Sbjct: 171 SYANMPAGMHMSPPVVLMPTVYQQGVGYVPIAGVPTVYNQGMVPMGMPAAPTVAAQEAPC 230

Query: 215 SNHNSNHLTDL 225
           S  +   L D+
Sbjct: 231 SEEDLKALQDM 241

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products.

Salmo salar (taxid: 8030)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
242003379	260	conserved hypothetical protein [Pediculu	0.501	0.673	0.639	1e-57
91081565	266	PREDICTED: similar to Toll-interacting p	0.455	0.597	0.627	2e-54
167444210	274	tollip-like protein [Sitophilus zeamais]	0.472	0.602	0.571	7e-52
307209202	277	Toll-interacting protein [Harpegnathos s	0.349	0.440	0.733	1e-47
307172268	276	Toll-interacting protein [Camponotus flo	0.349	0.442	0.741	1e-47
347970235	271	AGAP003615-PA [Anopheles gambiae str. PE	0.412	0.531	0.628	1e-47
380023084	280	PREDICTED: toll-interacting protein-like	0.349	0.435	0.741	2e-47
427792297	341	Putative toll-interacting protein, parti	0.458	0.469	0.577	1e-46
156541862	278	PREDICTED: toll-interacting protein-like	0.444	0.557	0.607	1e-46
66556835	280	PREDICTED: toll-interacting protein [Api	0.349	0.435	0.733	1e-46

>gi|242003379|ref|XP_002422717.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505539|gb|EEB09979.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/183 (63%), Positives = 131/183 (71%), Gaps = 8/183 (4%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGA-YSTASSLIQNPVGRLNITVVQAKLV 59
           FLR  N+        Q   D QTALALQ +L    YS       N  G+L+ITV QAKLV
Sbjct: 24  FLRVTNNRPLSAQEQQEAADAQTALALQQQLVETPYSY------NLSGKLSITVAQAKLV 77

Query: 60  KNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECS 119
           KNYG+ T+MDPYVRLRVGH VYETHTDPSGGK P+WN+ V CLLP GV SIYLEI+DECS
Sbjct: 78  KNYGM-TRMDPYVRLRVGHSVYETHTDPSGGKNPKWNRIVQCLLPHGVNSIYLEIFDECS 136

Query: 120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLE 179
           F MDELIAW  IPIP +VM GETHEDWFPLSGKQGE  EGMINLV+S+ VS +     + 
Sbjct: 137 FKMDELIAWTHIPIPQNVMNGETHEDWFPLSGKQGEGVEGMINLVISFAVSHYSIYSPVS 196

Query: 180 NSI 182
            SI
Sbjct: 197 TSI 199

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081565|ref|XP_975168.1| PREDICTED: similar to Toll-interacting protein [Tribolium castaneum] gi|270005116|gb|EFA01564.1| hypothetical protein TcasGA2_TC007125 [Tribolium castaneum]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 125/169 (73%), Gaps = 10/169 (5%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVK 60
           FLR    +S      Q   D+QTA+AL ++L+G          N VGRL+ITV QAKL K
Sbjct: 25  FLR----ISTSVQQQQEAADRQTAIALHHQLSGGQQYT-----NVVGRLSITVAQAKLAK 75

Query: 61  NYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF 120
           NYG+ T+MDPY R+RVGHCVYETHTDP+GGK PRWNK + CLLPQG+ +I LEI+DE SF
Sbjct: 76  NYGM-TRMDPYARIRVGHCVYETHTDPNGGKNPRWNKVIHCLLPQGINTITLEIFDERSF 134

Query: 121 TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169
           TMDELIAW +  IP  V+ GETHEDW+PL+GKQGE  EGMINLVLSY V
Sbjct: 135 TMDELIAWTQFQIPQQVLAGETHEDWYPLNGKQGEGVEGMINLVLSYLV 183

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167444210|gb|ABZ80666.1| tollip-like protein [Sitophilus zeamais]

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 129/175 (73%), Gaps = 10/175 (5%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVK 60
           FLR N S        Q   D+Q A+ALQ + +   S   + +QN  GRL+IT+ QAKL K
Sbjct: 25  FLRVNIS----PQEQQEAADRQAAIALQQQYS---SVGMAQVQNSAGRLSITIAQAKLAK 77

Query: 61  NYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF 120
           NYG+ T+MDPY R+RVGH +YET TDP+GGK PRWNK ++C +PQG++++ +EI+DE +F
Sbjct: 78  NYGM-TRMDPYCRIRVGHSIYETPTDPNGGKNPRWNKVIYCWIPQGISTMTIEIFDERNF 136

Query: 121 TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY--TVSFFF 173
           TMDELIAW +I IP  V++GETHEDW+PLSGKQGE  EGMINLVLSY  T S+ +
Sbjct: 137 TMDELIAWTQITIPQQVLQGETHEDWYPLSGKQGEGMEGMINLVLSYNATASYVY 191

Source: Sitophilus zeamais

Species: Sitophilus zeamais

Genus: Sitophilus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209202|gb|EFN86309.1| Toll-interacting protein [Harpegnathos saltator]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 105/124 (84%), Gaps = 2/124 (1%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           +GRL++T+ QAKLVKNYG+ TKMDPYVRLRVGH VYETHT+ +GGK P WNK + CLLP 
Sbjct: 63  IGRLSVTIAQAKLVKNYGM-TKMDPYVRLRVGHAVYETHTNSNGGKNPHWNKVIQCLLPP 121

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGEDKEGMINLV 164
           GVT IY+EIYDECSF MDELIAW  I IP  V+ KGETHEDW+ LSGKQG+++EGMINLV
Sbjct: 122 GVTQIYVEIYDECSFVMDELIAWGHIEIPPHVIQKGETHEDWYTLSGKQGDNQEGMINLV 181

Query: 165 LSYT 168
            SYT
Sbjct: 182 FSYT 185

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172268|gb|EFN63773.1| Toll-interacting protein [Camponotus floridanus]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 104/124 (83%), Gaps = 2/124 (1%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL++T+ QAKLVKNYG+ T+MDPYVRLRVGH VYETHTD +GGK P WNK + CLLP 
Sbjct: 62  VGRLSVTISQAKLVKNYGM-TRMDPYVRLRVGHSVYETHTDSNGGKNPHWNKVIQCLLPP 120

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGEDKEGMINLV 164
           GV  IY+EIYDECSF MDELIAW  I IP  V+ KGETHEDW+ LSGKQGE++EGMINLV
Sbjct: 121 GVNQIYIEIYDECSFVMDELIAWGHIEIPPQVIQKGETHEDWYMLSGKQGENQEGMINLV 180

Query: 165 LSYT 168
            SYT
Sbjct: 181 FSYT 184

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970235|ref|XP_562476.3| AGAP003615-PA [Anopheles gambiae str. PEST] gi|333468837|gb|EAL40603.3| AGAP003615-PA [Anopheles gambiae str. PEST]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 117/148 (79%), Gaps = 4/148 (2%)

Query: 20  DQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC 79
           D+Q ALALQ+     Y+    +  N VGRL+IT+ QAKLVKNYG +T+MDPYVRLRVGH 
Sbjct: 38  DRQAALALQS-YHNTYT--PHMAPNFVGRLSITIAQAKLVKNYG-ITRMDPYVRLRVGHF 93

Query: 80  VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMK 139
           VYET T P+GG+ PRWN+ + C LP GV +I LEIYDEC+F+ DELIAWA+I IP SV++
Sbjct: 94  VYETQTAPNGGRNPRWNRVIHCQLPAGVDTIALEIYDECNFSTDELIAWAEIRIPQSVLR 153

Query: 140 GETHEDWFPLSGKQGEDKEGMINLVLSY 167
           GETHEDW+PLSGKQGE  EG +++V+S+
Sbjct: 154 GETHEDWYPLSGKQGEGLEGSLDMVMSF 181

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023084|ref|XP_003695359.1| PREDICTED: toll-interacting protein-like [Apis florea]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 104/124 (83%), Gaps = 2/124 (1%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+IT+VQAKLVKNYG+ T+MDPYVRLRVGH VYETHT  +G K P WNK + C LP 
Sbjct: 65  VGRLSITIVQAKLVKNYGM-TRMDPYVRLRVGHAVYETHTCSNGAKNPHWNKVIQCYLPP 123

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGEDKEGMINLV 164
           GV+ IY+EIYDECSF MDELIAW  I IPS V+ KGETHEDWF LSGKQG+++EGMINLV
Sbjct: 124 GVSQIYIEIYDECSFVMDELIAWGHIDIPSQVLQKGETHEDWFMLSGKQGDNQEGMINLV 183

Query: 165 LSYT 168
            SYT
Sbjct: 184 FSYT 187

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792297|gb|JAA61600.1| Putative toll-interacting protein, partial [Rhipicephalus pulchellus]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 125/168 (74%), Gaps = 8/168 (4%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGA-YSTASSLIQNPVGRLNITVVQAKLV 59
           FLR + + +   S  Q  +D+QTA+ALQ +L+GA ++TA +     VGRL+I+V+QAKLV
Sbjct: 63  FLRVDTTPTT-GSQSQISVDEQTAIALQQQLSGAAFTTAQA-----VGRLSISVIQAKLV 116

Query: 60  KNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECS 119
           KNYG VT+MDPYVR+R+GH VYETHTD +G K P WNK   C L  GVT+  +EIYDEC+
Sbjct: 117 KNYG-VTRMDPYVRIRIGHNVYETHTDYNGAKNPHWNKLFHCFLSPGVTAFLVEIYDECA 175

Query: 120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167
           FT++E IAWA + IP +V  G+T + W PLSG+QGE KEG INLVLSY
Sbjct: 176 FTVNEKIAWAHVVIPEAVFSGQTVDIWHPLSGRQGESKEGNINLVLSY 223

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541862|ref|XP_001600167.1| PREDICTED: toll-interacting protein-like [Nasonia vitripennis]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 115/168 (68%), Gaps = 13/168 (7%)

Query: 1   FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVK 60
           FLR  N+ S    N Q + D+Q A ALQ       S         +GRL ITVVQAKL+K
Sbjct: 26  FLRIENTWS---GNQQEEADRQAAFALQQMQNQTMSL--------MGRLTITVVQAKLIK 74

Query: 61  NYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF 120
           NYG  T MDPYVRLRVGH +YETHTD  GGK P WNK +   LP GV  IY+EIYDECSF
Sbjct: 75  NYGF-TNMDPYVRLRVGHTIYETHTDRKGGKNPHWNKVIQVFLPPGVNKIYVEIYDECSF 133

Query: 121 TMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGEDKEGMINLVLSY 167
           TMDELIAW  I IPS V+ KG T+EDW+ LSGKQG++ EG INLVLSY
Sbjct: 134 TMDELIAWGHIDIPSQVIEKGTTYEDWYLLSGKQGDNLEGSINLVLSY 181

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66556835|ref|XP_624417.1| PREDICTED: toll-interacting protein [Apis mellifera]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 103/124 (83%), Gaps = 2/124 (1%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+IT+VQAKLVKNYG+ T+MDPYVRLRVGH VYETHT  +G K P WNK + C LP 
Sbjct: 65  VGRLSITIVQAKLVKNYGM-TRMDPYVRLRVGHAVYETHTCSNGAKNPHWNKVIQCYLPP 123

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGEDKEGMINLV 164
           GV  IY+EIYDECSF MDELIAW  I IPS V+ KGETHEDW+ LSGKQG+++EGMINLV
Sbjct: 124 GVLQIYIEIYDECSFVMDELIAWGHIDIPSQVLQKGETHEDWYMLSGKQGDNQEGMINLV 183

Query: 165 LSYT 168
            SYT
Sbjct: 184 FSYT 187

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
UNIPROTKB|Q9H0E2	274	TOLLIP "Toll-interacting prote	0.409	0.521	0.564	5.3e-40
RGD|1304676	274	Tollip "toll interacting prote	0.406	0.518	0.568	5.3e-40
MGI|MGI:1891808	274	Tollip "toll interacting prote	0.426	0.543	0.539	1.4e-39
UNIPROTKB|F1P006	274	TOLLIP "Toll-interacting prote	0.406	0.518	0.562	1.8e-39
UNIPROTKB|Q5ZK05	274	TOLLIP "Toll-interacting prote	0.406	0.518	0.562	1.8e-39
UNIPROTKB|Q2LGB5	273	TOLLIP "Toll-interacting prote	0.406	0.520	0.555	2.9e-39
UNIPROTKB|Q6DFR0	269	tollip "Toll-interacting prote	0.426	0.553	0.532	7.8e-39
UNIPROTKB|Q6INE3	269	tollip-b "Toll-interacting pro	0.406	0.527	0.549	7.8e-39
UNIPROTKB|Q3B8H2	269	tollip-a "Toll-interacting pro	0.404	0.524	0.549	9.9e-39
UNIPROTKB|B5X370	275	tollip "Toll-interacting prote	0.424	0.538	0.529	3.4e-38

UNIPROTKB|Q9H0E2 TOLLIP "Toll-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 87/154 (56%), Positives = 107/154 (69%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ    GA  T        VGRLNITVVQAKL KNYG+ T+MDPY RLR
Sbjct:    32 QVQLDAQAAQQLQ--YGGAVGT--------VGRLNITVVQAKLAKNYGM-TRMDPYCRLR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169
             S+ +G+  + W+ LSG+QG+DKEGMINLV+SY +
Sbjct:   141 SLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYAL 174

GO:0045087 "innate immune response" evidence=IEA

GO:0005150 "interleukin-1, Type I receptor binding" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032183 "SUMO binding" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0035325 "Toll-like receptor binding" evidence=IPI

GO:0006954 "inflammatory response" evidence=NAS

GO:0045092 "interleukin-18 receptor complex" evidence=NAS

GO:0045323 "interleukin-1 receptor complex" evidence=NAS

GO:0004871 "signal transducer activity" evidence=NAS

GO:0007165 "signal transduction" evidence=IPI

GO:0016310 "phosphorylation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IC

GO:0045321 "leukocyte activation" evidence=NAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|1304676 Tollip "toll interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 87/153 (56%), Positives = 108/153 (70%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ    GA  T        VGRL+ITVVQAKL KNYG+ T+MDPY RLR
Sbjct:    32 QIQLDAQAAQQLQ--YGGAVGT--------VGRLSITVVQAKLAKNYGM-TRMDPYCRLR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             S+ +G+  ++W+ LSG+QG+DKEGMINLV+SYT
Sbjct:   141 SLKQGQVEDEWYSLSGRQGDDKEGMINLVMSYT 173

GO:0005150 "interleukin-1, Type I receptor binding" evidence=IPI

GO:0006954 "inflammatory response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA;ISO

GO:0016310 "phosphorylation" evidence=ISO;ISS

GO:0016604 "nuclear body" evidence=IDA

GO:0019900 "kinase binding" evidence=IEA;ISO

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0032183 "SUMO binding" evidence=IPI

GO:0033235 "positive regulation of protein sumoylation" evidence=IDA

GO:0035325 "Toll-like receptor binding" evidence=IEA;ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

MGI|MGI:1891808 Tollip "toll interacting protein" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 82/152 (53%), Positives = 107/152 (70%)

Query:    17 TDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV 76
             T   QQ  + L  + A       ++    VGRL+ITVVQAKL KNYG+ T+MDPY RLR+
Sbjct:    25 TPTQQQQQIQLDAQAAQQLQYGGTV--GTVGRLSITVVQAKLAKNYGM-TRMDPYCRLRL 81

Query:    77 GHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSS 136
             G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP S
Sbjct:    82 GYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPES 141

Query:   137 VMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             + +G+  ++W+ LSG+QG+DKEGMINLV+SYT
Sbjct:   142 LKQGQVEDEWYSLSGRQGDDKEGMINLVMSYT 173

GO:0005150 "interleukin-1, Type I receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0016310 "phosphorylation" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032183 "SUMO binding" evidence=ISO

GO:0033235 "positive regulation of protein sumoylation" evidence=ISO

GO:0035325 "Toll-like receptor binding" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|F1P006 TOLLIP "Toll-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/153 (56%), Positives = 107/153 (69%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ    G  ST        VGRL+ITVVQAKL KNYG+ T+MDPY R+R
Sbjct:    32 QIQLDAQAAQQLQ--YGGPMST--------VGRLSITVVQAKLAKNYGM-TRMDPYCRIR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             S+ +G   ++W+ LSG+QG+DKEGMINLV+SYT
Sbjct:   141 SLKQGNVEDEWYSLSGRQGDDKEGMINLVMSYT 173

GO:0007165 "signal transduction" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0035325 "Toll-like receptor binding" evidence=IEA

UNIPROTKB|Q5ZK05 TOLLIP "Toll-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/153 (56%), Positives = 107/153 (69%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ    G  ST        VGRL+ITVVQAKL KNYG+ T+MDPY R+R
Sbjct:    32 QIQLDAQAAQQLQ--YGGPMST--------VGRLSITVVQAKLAKNYGM-TRMDPYCRIR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             S+ +G   ++W+ LSG+QG+DKEGMINLV+SYT
Sbjct:   141 SLKQGNVEDEWYSLSGRQGDDKEGMINLVMSYT 173

GO:0006954 "inflammatory response" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|Q2LGB5 TOLLIP "Toll-interacting protein" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 85/153 (55%), Positives = 108/153 (70%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ    GA  T        VGRL++TVVQAKL KNYG+ T+MDPY RLR
Sbjct:    32 QIQLDAQAAQQLQ--YGGALGT--------VGRLSVTVVQAKLAKNYGM-TRMDPYCRLR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  + IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHVTIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             ++ +G+  ++W+ LSG+QG+DKEGMINLVLSYT
Sbjct:   141 ALKQGKVVDEWYSLSGRQGDDKEGMINLVLSYT 173

GO:0016310 "phosphorylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0035325 "Toll-like receptor binding" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

UNIPROTKB|Q6DFR0 tollip "Toll-interacting protein" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/152 (53%), Positives = 107/152 (70%)

Query:    17 TDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV 76
             T   QQ  + L  +   A     S +   +GRL+ITVVQAKL KNYG+ T+MDPY R+R+
Sbjct:    25 TPTQQQQQIQLDAQ--AAQQLQYSGVMGTMGRLSITVVQAKLAKNYGM-TRMDPYCRIRL 81

Query:    77 GHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSS 136
             G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP +
Sbjct:    82 GYAVYETPTAHNGAKNPRWNKVIQCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPET 141

Query:   137 VMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             + +G+  ++WF LSG+QG+DKEGMINLV+SYT
Sbjct:   142 LKEGKHVDEWFSLSGRQGDDKEGMINLVMSYT 173

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|Q6INE3 tollip-b "Toll-interacting protein B" [Xenopus laevis (taxid:8355)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/153 (54%), Positives = 109/153 (71%)

Query:    16 QTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLR 75
             Q  LD Q A  LQ   +G  +T        +GRL+ITVVQAKL KNYG+ T+MDPY R+R
Sbjct:    32 QIQLDAQAAQQLQ--YSGVMAT--------MGRLSITVVQAKLAKNYGM-TRMDPYCRIR 80

Query:    76 VGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPS 135
             +G+ VYET T  +G K PRWNK + C +P GV S Y+EI+DE +F+MD+ IAW  I IP 
Sbjct:    81 LGYAVYETPTAHNGAKNPRWNKVIQCTIPPGVDSFYIEIFDERAFSMDDRIAWTHITIPE 140

Query:   136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
             ++ +G+  ++WF LSGKQG+DKEGMINLV+SYT
Sbjct:   141 TLKEGKHVDEWFSLSGKQGDDKEGMINLVMSYT 173

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|Q3B8H2 tollip-a "Toll-interacting protein A" [Xenopus laevis (taxid:8355)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 78/142 (54%), Positives = 104/142 (73%)

Query:    27 LQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTD 86
             +Q +   A     S +   +GRL+ITVVQAKL KNYG+ T+MDPY R+R+G+ VYET T 
Sbjct:    33 IQLDAQAAQQLQYSGVMGTMGRLSITVVQAKLAKNYGM-TRMDPYCRIRLGYAVYETPTA 91

Query:    87 PSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
              +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  I IP ++ +G+  ++W
Sbjct:    92 HNGAKNPRWNKVIQCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEW 151

Query:   147 FPLSGKQGEDKEGMINLVLSYT 168
             F LSG+QG+DKEGMINLV+SYT
Sbjct:   152 FSLSGRQGDDKEGMINLVMSYT 173

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|B5X370 tollip "Toll-interacting protein" [Salmo salar (taxid:8030)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 80/151 (52%), Positives = 104/151 (68%)

Query:    17 TDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV 76
             T   QQ  + L  + A       SL    VGRL+ITVVQAKL KNYG+ T+MDPY R+R+
Sbjct:    25 TPTQQQQQVQLDAQAAQQLQYGGSL--GTVGRLSITVVQAKLAKNYGM-TRMDPYCRVRL 81

Query:    77 GHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSS 136
             G+ VYET T  +G K PRWNK + C +P GV S YLEI+DE +F+MD+ IAW  + IP  
Sbjct:    82 GYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHVTIPEG 141

Query:   137 VMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167
             + +G   ++W+ LSG+QG+DKEGMINLV+SY
Sbjct:   142 LREGSVVDEWYSLSGRQGDDKEGMINLVMSY 172

GO:0016310 "phosphorylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DFR0	TOLIP_XENTR	No assigned EC number	0.5891	0.3667	0.4758	yes	N/A
Q2LGB5	TOLIP_BOVIN	No assigned EC number	0.5064	0.4154	0.5311	yes	N/A
Q5ZK05	TOLIP_CHICK	No assigned EC number	0.6178	0.3495	0.4452	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	349
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	9e-80
cd00030	102	cd00030, C2, C2 domain	5e-15
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	9e-15
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-11
smart00239	101	smart00239, C2, Protein kinase C conserved region	5e-11
pfam00168	85	pfam00168, C2, C2 domain	2e-09
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-06
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	3e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-05
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-05
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	6e-04
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	8e-04
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.003
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	0.004

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score =  238 bits (610), Expect = 9e-80
 Identities = 88/122 (72%), Positives = 99/122 (81%), Gaps = 1/122 (0%)

Query: 46  VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           VGRL+ITVVQAKLVKNYGL T+MDPY R+RVGH VYET T  +G K PRWNK + C LP+
Sbjct: 1   VGRLSITVVQAKLVKNYGL-TRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE 59

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
           GV SIY+EI+DE +FTMDE IAW  I IP SV  GET +DW+ LSGKQGEDKEGMINLV 
Sbjct: 60  GVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVF 119

Query: 166 SY 167
           SY
Sbjct: 120 SY 121

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 49  LNITVVQAKLVKNYGLVTKMDPYVRLRVG-HCVYETHTDPSGGKFPRWNKE-VFCLLPQG 106
           L +TV++A+ +    L  K DPYV++ +G    ++T    +    P WN+   F +L   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLN-PVWNETFEFPVLDPE 59

Query: 107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
             ++ +E++D+  F+ D+ +   +IP+   +  G+  E W PL
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 69.6 bits (171), Expect = 9e-15
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKE-VFCLLPQ 105
           G L + V++A+ + N   + K DPY  LR+G    +T TD  GG+ P W++E  F +   
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
               + + ++D+      +LI   ++ + S  +K    +DW+ L         G + L L
Sbjct: 61  KKPILKVAVFDD-DKRKPDLIGDTEVDL-SPALKEGEFDDWYEL--TLKGRYAGEVYLEL 116

Query: 166 SY 167
           ++
Sbjct: 117 TF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 49  LNITVVQAKLVKNYGLVTKMDPYVRLRV-GHCVYETHTDPSGGKFPRWNKEVFCLLP--- 104
           L IT++ A+ +KN  L  KM  Y  + +       T  D  GG  P WN+ +   L    
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61

Query: 105 --QGVTSIYLEIYDECSFTMDELIAWAKIP----IPSSVMKGETHEDWFPLSGKQGEDKE 158
             QG  ++ +E+Y E     D+LI   ++P    +  +   GE     + L    G+ + 
Sbjct: 62  LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ- 120

Query: 159 GMINL 163
           G++N 
Sbjct: 121 GVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 48  RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKE-VFCLL 103
            L + ++ A+ +       K DPYV++ +        +T    +    P WN+   F + 
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLN-PVWNETFEFEVP 59

Query: 104 PQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
           P  +  + +E+YD+  F  D+ I    IP+ S ++ G  HE  
Sbjct: 60  PPELAELEIEVYDKDRFGRDDFIGQVTIPL-SDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 49  LNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKE-VFCLLP 104
           L +TV+ AK +    L  K DPYV++ +G       +T         P WN+   F +  
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59

Query: 105 QGVTSIYLEIYDECSFTMDELIAWAK 130
             +  + +E+YD   F  D+ I    
Sbjct: 60  PELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)

Query: 47  GRLNITVVQAK-----------LVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
           G L I V++A+           LVK      K DPYV +RVG   +++         P+W
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKG-----KSDPYVIVRVGAQTFKSKVIKENLN-PKW 54

Query: 96  NKEVF-CLLPQ--GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152
           N EV+  ++ +  G   + +E++DE     D+ +    I + S   KG   E W PL   
Sbjct: 55  N-EVYEAVVDEVPG-QELEIELFDE-DPDKDDFLGRLSIDLGSVEKKGFIDE-WLPLEDV 110

Query: 153 QGEDKEGMINLVLS 166
           +     G ++L L 
Sbjct: 111 K----SGRLHLKLE 120

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 47  GRLNITVVQAK-LV-KNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP 104
           G L + VV+AK L  K+     K DPY  L VG   ++T T P+    P+WN   +C  P
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLN-PKWN--YWCEFP 57

Query: 105 ---QGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHE--DWFPL---SGKQGED 156
                   + L ++D+  F   + +    I +      G+T +   W  L      +   
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117

Query: 157 KEGMINLVLS 166
             G I+L  S
Sbjct: 118 VSGEIHLQFS 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 51  ITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ 105
           +TV+QA+     GL+ K      D YV +++G   Y T         P W +E    LP 
Sbjct: 3   VTVLQAR-----GLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTS-PVWKEECSFELPG 56

Query: 106 GVT------SIYLEIYDECSFTMDELIAWAKIPIPS-SVMKGETHEDWFPLSGKQGEDK 157
            ++      ++ L +       +D+ +    IP+      KG     WF L  K G+D 
Sbjct: 57  LLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDD 115

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 48  RLNITVVQAKLVKNYGLVTKMDPYVRLRV----GHCVYETHTDPSGGKFPRWNKEVFCLL 103
            L + V++A  +    L++  D YV L +               S    P WN E F   
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS--INPVWN-ETFEFR 57

Query: 104 PQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150
            Q      LE+   DE  + MD+ +      + S +  GE     F L+
Sbjct: 58  IQSQVKNVLELTVMDE-DYVMDDHLGTVLFDV-SKLKLGEKVRVTFSLN 104

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 69  DPYVRLRV-GHCVYETHT---DPSGGKFPRWNKEVFCLLPQGVTS-IYLEIYDECSFTMD 123
           DPYV+ +  G  VY++ T   + +    P W+ E F L  + VT  +Y++++D      D
Sbjct: 22  DPYVKFKYGGKTVYKSKTIYKNLN----PVWD-EKFTLPIEDVTQPLYIKVFDYDRGLTD 76

Query: 124 ELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168
           + +  A + + S++   +  E    L     ++  G I+LV++ T
Sbjct: 77  DFMGSAFVDL-STLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLL--- 103
           G L + ++ AK +++   + K+DPYV ++      ++      G+ P WN E F      
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWN-EKFKFTVEY 59

Query: 104 --PQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG 140
               G T + L I D+ +F+ D+ I  A I +     +G
Sbjct: 60  PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 93  PRWNKE-VFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
           P W++E VF  LP  V S  + + ++   + D  IA   + + S +  G+  ++W+PLS 
Sbjct: 46  PVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQL-SKLQNGQETDEWYPLSS 104

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 19/127 (14%)

Query: 49  LNITVVQAKLVKNYGLVTKMDPY--VRLRVGHCVYETHT--DPSGGKFPRWNKE-VFCLL 103
           L + +++AK + + G     DPY  V L     V  T T    +    P W +E VF   
Sbjct: 2   LRLRILEAKNLPSKGT---RDPYCTVSLDQVE-VARTKTVEKLN----PFWGEEFVFDDP 53

Query: 104 PQGVTSIYLEIY--DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG-KQGEDKEGM 160
           P  VT   L  Y  D+ S   D +I   K+ + S +  G+  ++WFPL+      + +G 
Sbjct: 54  PPDVTFFTLSFYNKDKRSKDRDIVIG--KVAL-SKLDLGQGKDEWFPLTPVDPDSEVQGS 110

Query: 161 INLVLSY 167
           + L   Y
Sbjct: 111 VRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.93
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.88
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.87
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.87
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.86
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.85
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.84
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.84
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.83
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.83
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.83
KOG1030|consensus	168		99.82
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.82
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.81
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.81
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.8
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.8
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.79
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.79
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.79
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.79
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.79
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.78
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.78
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.78
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.78
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.77
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.77
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.77
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.76
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.76
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.76
PLN03008	868	Phospholipase D delta	99.76
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.75
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.75
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.75
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.74
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.74
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
KOG1028|consensus	421		99.73
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.73
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.72
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.72
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.72
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.71
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.71
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.7
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.7
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.69
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.69
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.69
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.68
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.67
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.67
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.67
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.67
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.67
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.67
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.66
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.66
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.66
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.66
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.66
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.66
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.65
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.65
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.65
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.65
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.64
KOG0696|consensus	683		99.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.58
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.58
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.54
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.49
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.47
PLN02270	808	phospholipase D alpha	99.43
KOG1011|consensus	1283		99.38
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.38
KOG2059|consensus	800		99.37
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.31
KOG1028|consensus	421		99.24
PLN02223	537	phosphoinositide phospholipase C	99.22
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.2
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.19
PLN02952	599	phosphoinositide phospholipase C	99.14
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.13
PLN02230	598	phosphoinositide phospholipase C 4	99.08
PLN02222	581	phosphoinositide phospholipase C 2	99.06
KOG1328|consensus	1103		99.05
PLN02228	567	Phosphoinositide phospholipase C	99.05
KOG0169|consensus	746		99.04
PLN02352	758	phospholipase D epsilon	98.96
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.91
KOG1264|consensus	1267		98.88
KOG1031|consensus	1169		98.85
KOG1328|consensus	1103		98.68
KOG2059|consensus	800		98.62
KOG1326|consensus	1105		98.55
KOG1013|consensus	362		98.14
KOG1013|consensus	362		98.02
KOG0905|consensus	1639		98.02
KOG1326|consensus	1105		97.97
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	97.76
PLN02964	644	phosphatidylserine decarboxylase	97.51
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.46
KOG1011|consensus	1283		97.42
KOG2060|consensus	405		97.28
KOG1265|consensus	1189		96.79
KOG1327|consensus	529		96.61
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.55
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.49
PF15627	156	CEP76-C2: CEP76 C2 domain	96.2
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	96.17
KOG3837|consensus	523		96.13
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.11
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	95.43
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.11
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	95.09
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.83
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	94.72
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.68
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	94.63
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	94.48
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	94.36
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.17
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	93.81
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.71
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	93.54
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	93.51
KOG1452|consensus	442		93.38
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.36
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	93.14
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	92.26
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	92.14
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	91.56
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	91.07
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	90.64
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	90.61
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	90.18
KOG1329|consensus	887		90.02
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	89.49
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	89.19
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	88.57
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	88.5
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	88.42
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.14
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	87.7
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	87.56
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	87.3
KOG1327|consensus	529		87.29
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	87.17
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	86.28
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	86.15
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	85.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	85.3
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	83.42
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	82.98
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	82.94
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	82.66
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	81.94
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	81.86
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	81.85
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	81.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	81.79
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	81.7
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	81.68
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	81.53
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	80.52
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	80.49
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	80.39

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.93  E-value=2e-25  Score=188.79  Aligned_cols=121  Identities=72%  Similarity=1.209  Sum_probs=109.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~  125 (349)
                      .|+|.|+|++|++++..+ .|++||||+|.+++.+++|+++.+++.||+|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            489999999999998888 7999999999999999999998876779999999999998766789999999999999999


Q ss_pred             eEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         126 IAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      ||.+.+++.+.+..|...+.|++|.++.+.+..|+|+|+++|
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999997556677778999999887666788999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.88  E-value=1.2e-21  Score=164.14  Aligned_cols=120  Identities=19%  Similarity=0.339  Sum_probs=105.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      +|+|+|++|++|+..|..|.+||||++.+++ ..++|+++++ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence            4899999999999999999999999999987 6789999877 5699999999999877678899999999999899999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      |.+.+++.+ +..+...+.|++|.++.+.+..|+|+|.++|+|
T Consensus        80 G~~~~~l~~-l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          80 GSAFVDLST-LELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEEHHH-cCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            999999995 445555889999986655567899999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.87  E-value=1.3e-21  Score=165.25  Aligned_cols=117  Identities=25%  Similarity=0.449  Sum_probs=101.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc------CCeEEEEEEeecCCCCC
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ------GVTSIYLEIYDECSFTM  122 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~------~~~~L~I~V~D~d~~sk  122 (349)
                      ++|+|++|+||+.++..|.+||||+|.+++.+++|++++++ .||+|||+|.|.+..      ....|.|+|||++.+++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            57999999999999999999999999999999999998875 599999999999876      36789999999999999


Q ss_pred             CceeEEEEEeCCcccc-CCcceeeEEEccCCCC--CCcceEEEEEEE
Q psy3181         123 DELIAWAKIPIPSSVM-KGETHEDWFPLSGKQG--EDKEGMINLVLS  166 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~-~g~~~~~W~~L~~k~g--~~~~GeI~L~L~  166 (349)
                      |++||++.|+|+++.. .+.....||+|.++.+  .+..|+|+|+++
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            9999999999997552 4555789999986433  346799999863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=2.5e-21  Score=163.66  Aligned_cols=120  Identities=20%  Similarity=0.225  Sum_probs=104.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecCCCC-C
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDECSFT-M  122 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d~~s-k  122 (349)
                      +|+|+|++|++|+..+..|.+||||++.+++...+|+++++ +.||.|||+|.|.+...    ...|.|+|||++.++ +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            48999999999999999899999999999999999999876 56999999999998753    367999999999886 7


Q ss_pred             CceeEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEE
Q psy3181         123 DELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYT  168 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~  168 (349)
                      +++||++.++++++...+.....||+|..+. ..+.+|+|+|+++++
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            9999999999997665667788999998542 245789999999986

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.87  E-value=2e-21  Score=161.57  Aligned_cols=117  Identities=26%  Similarity=0.522  Sum_probs=102.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCce
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~  125 (349)
                      |.|.|+|++|++|+..+..|.+||||+|.+++...+|+++.+++.||.|||.|.|.+... ...|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            789999999999999999999999999999999999998876667999999999999764 578999999999876 999


Q ss_pred             eEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         126 IAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      ||++.+++.+++. +.....|++|..+ + +..|+|+|+++|
T Consensus        80 iG~~~~~l~~~~~-~~~~~~w~~L~~~-~-~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALK-EGEFDDWYELTLK-G-RYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhh-cCCCCCcEEeccC-C-cEeeEEEEEEEC
Confidence            9999999997554 4447899999854 2 478999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=8.5e-21  Score=166.04  Aligned_cols=123  Identities=21%  Similarity=0.337  Sum_probs=105.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeE
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIA  127 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG  127 (349)
                      |.|+|++|++|++++.+|.+||||++.++++..+|++..+++.||+|||+|.|.+.+. ...|.|+|||++..++|++||
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG   81 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG   81 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence            8999999999999999999999999999999999999877567999999999998754 468999999999888899999


Q ss_pred             EEEEeCCcccc---CCcceeeEEEccCCCC-------CCcceEEEEEEEEEEcc
Q psy3181         128 WAKIPIPSSVM---KGETHEDWFPLSGKQG-------EDKEGMINLVLSYTVSF  171 (349)
Q Consensus       128 ~v~I~L~e~l~---~g~~~~~W~~L~~k~g-------~~~~GeI~L~L~~~p~~  171 (349)
                      ++.++|+++..   .+...++||+|....+       .+..|+|+|.++|.+..
T Consensus        82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~  135 (150)
T cd04019          82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY  135 (150)
T ss_pred             EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence            99999996543   2345689999986532       35679999999998543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=1.6e-20  Score=159.99  Aligned_cols=113  Identities=19%  Similarity=0.275  Sum_probs=98.7

Q ss_pred             EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCC----
Q psy3181          49 LNITVVQAKL---VKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFT----  121 (349)
Q Consensus        49 L~V~Iv~Arn---L~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~s----  121 (349)
                      |.|+|++|+|   |+.+|..|++||||+|++++++.+|+++++ +.||+|||+|.|.+.+....|.|+|||++.++    
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            8999999999   899999999999999999999999999987 56999999999999877779999999999873    


Q ss_pred             --CCceeEEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEE
Q psy3181         122 --MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINL  163 (349)
Q Consensus       122 --kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L  163 (349)
                        +|++||++.++|.. +..+...+.||+|...+  +.+..|+|++
T Consensus        81 ~~~dd~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          81 VQPDVLIGKVRIRLST-LEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCCceEEEEEEEHHH-ccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence              79999999999995 55666688999997532  3456788875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=4e-20  Score=155.28  Aligned_cols=120  Identities=25%  Similarity=0.350  Sum_probs=103.5

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCC
Q psy3181          47 GRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMD  123 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skd  123 (349)
                      |.|.|+|++|++|+..+.  .+.+||||++.++...++|+++++ +.||.|||+|.|.+.. ....|.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999999999988  899999999999999999999887 5599999999999976 468999999999999889


Q ss_pred             ceeEEEEEeCCcccc--CCcceeeEEEccCCCC---CCcceEEEEEEEE
Q psy3181         124 ELIAWAKIPIPSSVM--KGETHEDWFPLSGKQG---EDKEGMINLVLSY  167 (349)
Q Consensus       124 d~LG~v~I~L~e~l~--~g~~~~~W~~L~~k~g---~~~~GeI~L~L~~  167 (349)
                      ++||.+.+++.+...  .....+.||+|.++..   ....|+|+|+++|
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            999999999997653  2234679999986522   3468999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=6.8e-20  Score=151.88  Aligned_cols=114  Identities=24%  Similarity=0.350  Sum_probs=101.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L  126 (349)
                      .|+|+|++|++|+..+.+|.+||||++.+++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.+++|++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            37899999999999999999999999999999999999877 56999999999998765 68899999999999999999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      |.+.++|++ +..+...+.|++|.+.     .|+|++.+.|+
T Consensus        80 G~~~~~l~~-l~~~~~~~~w~~L~~~-----~G~~~~~~~~~  115 (116)
T cd08376          80 GRCEIDLSA-LPREQTHSLELELEDG-----EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEeHHH-CCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence            999999996 4455668899999743     49999998875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=4.2e-20  Score=155.71  Aligned_cols=114  Identities=18%  Similarity=0.311  Sum_probs=98.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCceeE
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDELIA  127 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd~LG  127 (349)
                      |.|+|++|+||+.+    .+||||++.+++...+|+++++ +.||+|||+|.|.+.. ....|.|+|||++.. ++++||
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG   75 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG   75 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence            89999999999888    6899999999999999999877 4599999999999876 468899999999977 689999


Q ss_pred             EEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         128 WAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       128 ~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      ++.++++++...    +...+.||+|....+.+..|+|+|.++|-
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            999999976542    23456999998765567889999999983

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.83  E-value=1.2e-19  Score=153.33  Aligned_cols=119  Identities=19%  Similarity=0.390  Sum_probs=101.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH--CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      |.|+|++|+||+.  ..|.+||||++.++.  ..++|++++++ .||+|||.|.|.+......|.|+|||++..++|++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNT-SNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecC-CCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence            6899999999988  678999999999973  57899998874 599999999999976678899999999999999999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEEEEEEEEcc
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINLVLSYTVSF  171 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L~L~~~p~~  171 (349)
                      |++.+++.++. .+.....|++|.++.  +....|+|.+++.|.+.+
T Consensus        78 G~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          78 GLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            99999999644 445567899998653  245689999999997654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.83  E-value=8.1e-20  Score=154.96  Aligned_cols=119  Identities=19%  Similarity=0.342  Sum_probs=101.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-------VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF  120 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-------~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~  120 (349)
                      .|+|+|++|++|+..+..|.+||||++.+++.       ..+|+++++ +.||.|||+|.|.+......|.|+|||++.+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence            38999999999999999999999999998654       578998876 5699999999999977667899999999999


Q ss_pred             CCCceeEEEEEeCCccccCCc-----ceeeEEEccCCC-CCCcceEEEEEEEE
Q psy3181         121 TMDELIAWAKIPIPSSVMKGE-----THEDWFPLSGKQ-GEDKEGMINLVLSY  167 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~~g~-----~~~~W~~L~~k~-g~~~~GeI~L~L~~  167 (349)
                      +++++||++.+++.++.....     ....||+|.+.. ..+..|+|+|++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            999999999999997665432     356999998542 24578999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.7e-19  Score=149.85  Aligned_cols=117  Identities=25%  Similarity=0.350  Sum_probs=102.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|+++++ +.||.|||+|.|.+......+.|+|||++..+++++|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL   79 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence            789999999999999999999999999999988899999887 4599999999999877678999999999988899999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSY  167 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~  167 (349)
                      |++.+++.+. ..+  ...||.|..+.. .+..|+|.|++.+
T Consensus        80 G~~~~~l~~~-~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          80 GKVAIPLLSI-KNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eEEEEEHHHC-CCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999964 334  358999975432 4578999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.83  E-value=1.4e-19  Score=152.52  Aligned_cols=117  Identities=21%  Similarity=0.327  Sum_probs=98.5

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          49 LNITVVQAKLVKNYG-LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      |.|+|++|+||+.++ ..|.+||||+|.+++. ..+|+++++ +.||.|||+|.|.++.....|.|.|||++.+++|++|
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence            789999999999874 4688999999999865 678999877 5699999999999987678999999999999999999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSY  167 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~  167 (349)
                      |.+.++++++. .+...+.||+|.... ..+..|+|+|++.|
T Consensus        81 G~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          81 GKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999644 445578999998532 23457999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>KOG1030|consensus

Probab=99.82  E-value=4.3e-20  Score=162.40  Aligned_cols=97  Identities=25%  Similarity=0.395  Sum_probs=90.2

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM  122 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk  122 (349)
                      ....|.|.|+|++|.||...|..+++||||++++++++.+|+++++ ++||+|||.|+|.+.++...|+++|||+|.+++
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS   80 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence            3567999999999999999999999999999999999999999887 459999999999999999999999999999999


Q ss_pred             CceeEEEEEeCCccccCC
Q psy3181         123 DELIAWAKIPIPSSVMKG  140 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g  140 (349)
                      |||||.+.|+|...+...
T Consensus        81 dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             ccccceeeeccHHHHHHh
Confidence            999999999999766543

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.82  E-value=2.4e-19  Score=150.69  Aligned_cols=117  Identities=24%  Similarity=0.370  Sum_probs=99.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeE
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIA  127 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG  127 (349)
                      |.|+|++|++|++.+..|.+||||++.+++. ..+|+++++ +.||.|||.|.|.+......|.|.|||++.+++|++||
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence            8899999999999999999999999999875 469999877 56999999999999777789999999999999999999


Q ss_pred             EEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEE
Q psy3181         128 WAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLS  166 (349)
Q Consensus       128 ~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~  166 (349)
                      ++.++++++...+...+.|++|.+.. .....|+|++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999986554344578999997532 2346799998764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=3.5e-19  Score=153.23  Aligned_cols=120  Identities=18%  Similarity=0.312  Sum_probs=101.4

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFT  121 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~s  121 (349)
                      ....|.|+|+|++|++|+..|..|.+||||++.+++..++|+++++ +.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~   89 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS   89 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence            5567999999999999999999999999999999999999999887 56999999999998764 578999999999999


Q ss_pred             CCceeEEEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         122 MDELIAWAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       122 kdd~LG~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      +|++||++.+++.+++..    ......|..|..    ...|+|+|++.|
T Consensus        90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~  135 (136)
T cd08375          90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL  135 (136)
T ss_pred             CCCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence            999999999999976641    112335666642    356999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.82  E-value=3.4e-19  Score=157.07  Aligned_cols=122  Identities=22%  Similarity=0.371  Sum_probs=102.8

Q ss_pred             CcceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEEEecCCCCCC
Q psy3181          44 NPVGRLNITVVQAKLVKNYG------------------------------LVTKMDPYVRLRVGHCV-YETHTDPSGGKF   92 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d------------------------------~~G~sDPYV~V~lg~~~-~kTkvvk~~~~n   92 (349)
                      ..+|+|.|+|++|++|+.+|                              ..|.+||||+|.+++.. .+|++++++ .|
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~-~n   82 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENS-EN   82 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCC-CC
Confidence            46899999999999999987                              34678999999999754 699998775 69


Q ss_pred             CccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC--CCcceEEEEEEEEE
Q psy3181          93 PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG--EDKEGMINLVLSYT  168 (349)
Q Consensus        93 P~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g--~~~~GeI~L~L~~~  168 (349)
                      |+|||+|.|.+......|.|+|||+|.++ +++||.+.++++++. .+...+.|++|.+..+  .+..|.|+|+++|+
T Consensus        83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            99999999998777788999999999886 689999999999654 5666889999975433  34568999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.82  E-value=6.1e-19  Score=149.45  Aligned_cols=119  Identities=20%  Similarity=0.361  Sum_probs=98.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD  123 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd  123 (349)
                      ...|+|+|++|+||+..   +.+||||+|.+++. ..+|++ ++ +.||.|||+|.|.+.+. ...+.|.|||++..++|
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d   77 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD   77 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence            35699999999999875   46899999999874 467886 44 56999999999986554 36799999999999999


Q ss_pred             ceeEEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEEEEEEEEc
Q psy3181         124 ELIAWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINLVLSYTVS  170 (349)
Q Consensus       124 d~LG~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L~L~~~p~  170 (349)
                      ++||.+.++|.+ +..+...+.||+|.+..  +.+..|+|+|+++|.+.
T Consensus        78 ~~iG~v~i~l~~-l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          78 SEIAEVTVQLSK-LQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CeEEEEEEEHhH-ccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            999999999995 55566688999998653  34567999999999863

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=9.2e-20  Score=153.44  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      |+.+....|.|+|+|++|++|+   ..|.+||||++.+..    .+.+|++.++ +.||+|||+|.|.++..   ...|.
T Consensus         6 sL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~   81 (118)
T cd08677           6 SLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLT   81 (118)
T ss_pred             EEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEE
Confidence            4778999999999999999998   346799999999863    4778888776 56999999999999764   57899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      |+|||+|+++++++||++.+++.+ +..+...++|..|
T Consensus        82 ~~V~d~Drfs~~d~IG~v~l~l~~-~~~~~~~~~W~~~  118 (118)
T cd08677          82 LTLRCCDRFSRHSTLGELRLKLAD-VSMMLGAAQWVDL  118 (118)
T ss_pred             EEEEeCCCCCCCceEEEEEEcccc-ccCCccccchhcC
Confidence            999999999999999999999995 4334446678654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=5.5e-19  Score=148.21  Aligned_cols=116  Identities=22%  Similarity=0.343  Sum_probs=99.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L  126 (349)
                      +|+|+|++|++|+..+..+.+||||+|.+++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.++++++|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            48999999999999999899999999999999999999887 45999999999998765 57899999999999999999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCC-----CCCcceEEEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQ-----GEDKEGMINLVL  165 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~-----g~~~~GeI~L~L  165 (349)
                      |.+.++|.++ ..+...+.||.|.+..     ..+..|.|.|.+
T Consensus        80 G~~~~~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTL-QQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHc-ccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999964 4444578999997521     235679998865

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.81  E-value=1.9e-19  Score=151.98  Aligned_cols=105  Identities=20%  Similarity=0.301  Sum_probs=89.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEe-cc---CCeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLL-PQ---GVTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V-~~---~~~~L  110 (349)
                      +.+.  .+.|.|+|++|++|+..+ .+.+||||+|.+.     ..+.+|+++++ +.||+|||+|.|.+ +.   ....|
T Consensus         8 l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L   83 (122)
T cd08381           8 ISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVL   83 (122)
T ss_pred             EEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEE
Confidence            4445  689999999999999999 8999999999986     34788999877 46999999999997 32   25789


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      .|+|||+|.++++++||++.|+|.+ +..+...+.||+|
T Consensus        84 ~~~V~d~d~~~~~~~lG~~~i~l~~-l~~~~~~~~W~~L  121 (122)
T cd08381          84 QVSVWSHDSLVENEFLGGVCIPLKK-LDLSQETEKWYPL  121 (122)
T ss_pred             EEEEEeCCCCcCCcEEEEEEEeccc-cccCCCccceEEC
Confidence            9999999999999999999999996 4445557899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.81  E-value=5.2e-19  Score=147.54  Aligned_cols=121  Identities=22%  Similarity=0.307  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181          46 VGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVGH--CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM  122 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk  122 (349)
                      .|.|.|+|++|++|+..+. .+.+||||++.+++  ...+|+++.+ +.||.|||.|.|.+......|.|+|||++..++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~   79 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK   79 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence            4889999999999997664 46799999999987  7899999877 569999999999998667899999999999989


Q ss_pred             CceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         123 DELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      |++||.+.++|.++...+.....|+.+..  ..+..|+|+++++|.|
T Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~p  124 (124)
T cd04044          80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFFP  124 (124)
T ss_pred             CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeCC
Confidence            99999999999976554432234555543  2346799999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.81  E-value=6.2e-19  Score=146.47  Aligned_cols=114  Identities=26%  Similarity=0.443  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCC
Q psy3181          47 GRLNITVVQAKLVKNYGL------VTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECS  119 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~------~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~  119 (349)
                      |.|.|+|++|++|+..+.      .|.+||||++.+++..++|+++++ +.||.|||+|.|.+.. ....|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            689999999999998875      368999999999999999999877 5699999999999865 46889999999998


Q ss_pred             CCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      . ++++||.+.+++.++... ...+.||+|.+.    ..|+|+++++|
T Consensus        80 ~-~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~----~~G~~~~~~~~  121 (121)
T cd08391          80 D-KDDFLGRLSIDLGSVEKK-GFIDEWLPLEDV----KSGRLHLKLEW  121 (121)
T ss_pred             C-CCCcEEEEEEEHHHhccc-CccceEEECcCC----CCceEEEEEeC
Confidence            8 799999999999976544 447899999753    45999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=8.9e-19  Score=146.27  Aligned_cols=112  Identities=20%  Similarity=0.236  Sum_probs=96.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCc
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd  124 (349)
                      |.|+|++|++|+..+..|.+||||++.++   ....+|+++++ +.||+|||+|.|.+... ...|.|+|||+|.+ +|+
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            78999999999999988999999999986   35789999887 45999999999998654 46799999999988 899


Q ss_pred             eeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      +||++.+++++ +..+.....|++|..+    .+|+|++++.+
T Consensus        80 ~iG~~~~~l~~-l~~g~~~~~~~~L~~~----~~g~l~~~~~~  117 (119)
T cd04036          80 HLGTVLFDVSK-LKLGEKVRVTFSLNPQ----GKEELEVEFLL  117 (119)
T ss_pred             ccEEEEEEHHH-CCCCCcEEEEEECCCC----CCceEEEEEEe
Confidence            99999999995 5667778999999754    36999998875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.80  E-value=2.7e-19  Score=151.40  Aligned_cols=109  Identities=16%  Similarity=0.240  Sum_probs=93.4

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      +.+....+.|.|+|++|+||++++.. |.+||||++.+.     ..+.+|+++++ +.||+|||+|.|.+...   ...|
T Consensus         8 l~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L   86 (125)
T cd08393           8 LDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVL   86 (125)
T ss_pred             EEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEE
Confidence            77788889999999999999999976 899999999984     23578999877 56999999999998643   4789


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .|+|||+|.++++++||++.++|.+ +..+.....||+|.
T Consensus        87 ~~~V~d~~~~~~~~~iG~~~i~L~~-~~~~~~~~~W~~L~  125 (125)
T cd08393          87 NLSVWHRDSLGRNSFLGEVEVDLGS-WDWSNTQPTWYPLQ  125 (125)
T ss_pred             EEEEEeCCCCCCCcEeEEEEEecCc-cccCCCCcceEECc
Confidence            9999999999999999999999995 44445577899884

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.80  E-value=2.6e-18  Score=145.40  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd  124 (349)
                      +.+.|+|+|++|++|+..+.+|.+||||++.+++..++|+++++ +.||+|||.|.|.+......|.|+|||++..+ |+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~   78 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DE   78 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCCC-CC
Confidence            35789999999999999999999999999999999999999876 56999999999998877889999999999875 89


Q ss_pred             eeEEEEEeCCccccCCcceeeEEEccC---CCCCCcceEEEEEEEEEE
Q psy3181         125 LIAWAKIPIPSSVMKGETHEDWFPLSG---KQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~---k~g~~~~GeI~L~L~~~p  169 (349)
                      +||.+.+++.+ ...  ....|++|..   +...+..|+|.|++.+.+
T Consensus        79 ~lG~~~~~l~~-~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          79 FLGQATLSADP-NDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             ceEEEEEeccc-CCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            99999999985 332  2457888853   233567899999988764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.79  E-value=2.2e-18  Score=147.49  Aligned_cols=119  Identities=17%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc----------CCeEEEEEEeec
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ----------GVTSIYLEIYDE  117 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~----------~~~~L~I~V~D~  117 (349)
                      .|+|+|++|++|+.+|..|.+||||+|.+++...+|+++++ +.||.|||+|.|.+..          ....|.|+|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            58999999999999999999999999999999999999877 5699999999997421          125789999999


Q ss_pred             CCCCCCceeEEEEEe-CCcccc---CCcceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181         118 CSFTMDELIAWAKIP-IPSSVM---KGETHEDWFPLSGKQGEDKEGMINLVLSYTVS  170 (349)
Q Consensus       118 d~~skdd~LG~v~I~-L~e~l~---~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~  170 (349)
                      |..++|++||++.+. +. .+.   .+....+|++|..+ + ...|+|++++.+.+.
T Consensus        81 d~~~~d~~iG~~~i~~~~-~~~~~~~~~~~~~W~~L~~~-~-~~~Geil~~~~~~~~  134 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLV-KLDLEEDFPPKLQWFPIYKG-G-QSAGELLAAFELIEV  134 (135)
T ss_pred             cCCCCCccceEEEeeeee-ecccCCCCCCCceEEEeecC-C-CchhheeEEeEEEEe
Confidence            999999999999873 33 222   34567899999743 2 468999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.79  E-value=5.6e-19  Score=150.57  Aligned_cols=110  Identities=14%  Similarity=0.211  Sum_probs=94.3

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      +.+....+.|.|+|++|+||+..+.. |.+||||++.+.     ..+.+|+++++ +.||+|||+|.|.++..   ...|
T Consensus         8 l~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L   86 (128)
T cd08392           8 LHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQL   86 (128)
T ss_pred             EEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEE
Confidence            77788899999999999999999875 999999999985     23678999876 56999999999998654   5789


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccC--CcceeeEEEcc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMK--GETHEDWFPLS  150 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~--g~~~~~W~~L~  150 (349)
                      .+.|||.+.++++++||++.|+|.+.-..  +.....||+|.
T Consensus        87 ~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          87 QVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             EEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999999999999999999975333  44677999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.79  E-value=8.8e-19  Score=148.46  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=92.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      +.+....|.|.|+|++|+||+..+. .|.+||||++.+.     ..+.+|+++++ +.||.|||+|.|.++..   ...|
T Consensus         8 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L   86 (125)
T cd04029           8 LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTL   86 (125)
T ss_pred             EEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEE
Confidence            7778899999999999999998765 5899999999884     23578998776 56999999999998653   5689


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .|+|||++.++++++||++.++|.+ +......+.||+|.
T Consensus        87 ~~~V~d~~~~~~~~~lG~~~i~l~~-~~~~~~~~~w~~l~  125 (125)
T cd04029          87 QLSVWHYDRFGRNTFLGEVEIPLDS-WNFDSQHEECLPLH  125 (125)
T ss_pred             EEEEEECCCCCCCcEEEEEEEeCCc-ccccCCcccEEECc
Confidence            9999999999999999999999995 54445578999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.79  E-value=7.8e-19  Score=147.54  Aligned_cols=115  Identities=24%  Similarity=0.357  Sum_probs=99.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC-----CeEEEEEEeecCCCC
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG-----VTSIYLEIYDECSFT  121 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~~~L~I~V~D~d~~s  121 (349)
                      +|.|+|++|++|+..+..+.+||||+|++++ ...+|++..+++.||.|||+|.|.+...     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999999899999999999987 8889998766567999999999998766     588999999999888


Q ss_pred             CCceeEEEEEeCCccccCCc----ceeeEEEccCCCCCCcceEEEE
Q psy3181         122 MDELIAWAKIPIPSSVMKGE----THEDWFPLSGKQGEDKEGMINL  163 (349)
Q Consensus       122 kdd~LG~v~I~L~e~l~~g~----~~~~W~~L~~k~g~~~~GeI~L  163 (349)
                      +|++||++.+++.+++..+.    ....||.|..+. .+..|.|+|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-GKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-CCcCeEEeC
Confidence            89999999999998766443    247899998654 467899875

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.79  E-value=3.6e-18  Score=144.18  Aligned_cols=116  Identities=22%  Similarity=0.147  Sum_probs=100.3

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc---CCeEEEEEEeecCCCCCCceeEEE
Q psy3181          53 VVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ---GVTSIYLEIYDECSFTMDELIAWA  129 (349)
Q Consensus        53 Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~---~~~~L~I~V~D~d~~skdd~LG~v  129 (349)
                      |++|++|+.  ..|.+||||+|.+++...+|++++++ .||+|||+|.|.+..   ....|.|+|||++..++|++||++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence            689999988  67899999999999999999998875 599999999999864   368899999999999999999999


Q ss_pred             EEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181         130 KIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       130 ~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      .++++++.. +.....|++|..+.+....|+|+++++|.|.+.
T Consensus        79 ~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          79 TVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            999996554 455788999976545455799999999998765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=1.6e-18  Score=145.60  Aligned_cols=109  Identities=18%  Similarity=0.343  Sum_probs=95.0

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+....|.|.|+|++|++|+..+..|.+||||++.+.   ....+|+++++ +.||.|||+|.|.++..   ...|.|+
T Consensus         9 l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~   87 (124)
T cd08387           9 LEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVL   87 (124)
T ss_pred             EEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence            67788899999999999999999999999999999984   45688999877 56999999999998754   4689999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |||++.++++++||++.++|+++... ...+.||+|.
T Consensus        88 V~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~~W~~l~  123 (124)
T cd08387          88 LYDFDQFSRDECIGVVELPLAEVDLS-EKLDLWRKIQ  123 (124)
T ss_pred             EEECCCCCCCceeEEEEEecccccCC-CCcceEEECc
Confidence            99999999999999999999965444 4678999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=3.7e-18  Score=144.63  Aligned_cols=114  Identities=24%  Similarity=0.380  Sum_probs=96.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC-------
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF-------  120 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~-------  120 (349)
                      .|.|+|++|++|+..|..|.+||||+|.+++...+|+++++ +.||.|||+|.|.+......|.|+|||+|..       
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            68999999999999999999999999999988999999877 5699999999999866667899999999853       


Q ss_pred             ----CCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEE
Q psy3181         121 ----TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVL  165 (349)
Q Consensus       121 ----skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L  165 (349)
                          +.+++||.+.+++.+ +..  ..+.||.|..+.+ ....|+|+|++
T Consensus        81 ~~~~~~~~~iG~~~i~l~~-~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRT-LSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eccccCCCcceEEEEEhHH-ccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence                468999999999985 332  2579999986543 35789999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.78  E-value=7.7e-18  Score=143.20  Aligned_cols=116  Identities=21%  Similarity=0.389  Sum_probs=99.0

Q ss_pred             ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCeEEEEEE
Q psy3181          46 VGRLNITVVQAKLVKNYGLV----------TKMDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEI  114 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~----------G~sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V  114 (349)
                      .|.|+|+|++|++|+..+..          |.+||||++.+++.. .+|++.++ +.||.|||+|.|.+. ....|.|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~l~~~v   80 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRNLELTV   80 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCEEEEEE
Confidence            58899999999999988863          689999999999765 58888766 569999999999996 457899999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccC-CcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMK-GETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~-g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      ||++.++++++||.+.++|+++... +...+.|++|.+      .|.|+++++|..
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~~~  130 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIELKG  130 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEEec
Confidence            9999888899999999999965553 556789999973      499999998864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.78  E-value=3.6e-18  Score=143.94  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=97.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC--Cce
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG-HCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM--DEL  125 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk--dd~  125 (349)
                      |+|+|++|++|+..+.+|.+||||++.++ ...++|+++++ +.||.|||+|.|.+.. ...|.|+|||++.+++  |++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence            79999999999999999999999999996 67889999876 5599999999999966 6899999999998875  579


Q ss_pred             eEEEEEeCCccccCCcceeeEEEccCCC---CCCcceEEEEEE
Q psy3181         126 IAWAKIPIPSSVMKGETHEDWFPLSGKQ---GEDKEGMINLVL  165 (349)
Q Consensus       126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~---g~~~~GeI~L~L  165 (349)
                      ||.+.+++.+++........|++|....   .....|+|.+.+
T Consensus        80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            9999999998766554457899995422   245579998865

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=3.5e-18  Score=144.38  Aligned_cols=102  Identities=18%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEee
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRV-G----H--CVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYD  116 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-g----~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D  116 (349)
                      +|+|+|++|++|+..+. |.+||||+|.+ |    .  ++++|++..+ +.||+|||+|.|.+...    ...|.|.|||
T Consensus         1 kL~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            48999999999999885 99999999997 3    2  3568888755 66999999999998743    3569999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +|..+++++||++.++|.++. .+...+.|++|...
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~-~~~~~~~w~~L~~~  113 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIA-QAGSCACWLPLGRR  113 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCc-CCCcEEEEEECcCc
Confidence            998888999999999999654 44558899999753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.77  E-value=1.8e-18  Score=144.79  Aligned_cols=108  Identities=17%  Similarity=0.251  Sum_probs=92.3

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEecc----CCeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L  110 (349)
                      +.+....+.|.|+|++|++|+..+..+.+||||+|.+..     ...+|+++++ +.||+|||+|.|.+..    ....|
T Consensus         9 l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l   87 (125)
T cd04031           9 LWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTL   87 (125)
T ss_pred             EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEE
Confidence            667888899999999999999999989999999999864     5778998877 5599999999998643    25789


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .|+|||++.++++++||++.++|++....+  ...||+|+
T Consensus        88 ~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~--~~~W~~L~  125 (125)
T cd04031          88 EVTVWDYDRDGENDFLGEVVIDLADALLDD--EPHWYPLQ  125 (125)
T ss_pred             EEEEEeCCCCCCCcEeeEEEEecccccccC--CcceEECc
Confidence            999999999999999999999999733333  46899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.77  E-value=3.4e-18  Score=143.43  Aligned_cols=109  Identities=21%  Similarity=0.345  Sum_probs=94.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+....+.|.|+|++|+||+..+..|.+||||++.+.   ...++|+++++ +.||+|||+|.|.+...   ...|.|+
T Consensus         9 l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~   87 (124)
T cd08385           9 LDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFS   87 (124)
T ss_pred             EEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEE
Confidence            56677889999999999999999999999999999985   34678998876 55999999999998653   4689999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |||++.++++++||++.++|++ +..+...++|++|+
T Consensus        88 V~d~d~~~~~~~lG~~~i~l~~-~~~~~~~~~W~~l~  123 (124)
T cd08385          88 VYDFDRFSKHDLIGEVRVPLLT-VDLGHVTEEWRDLE  123 (124)
T ss_pred             EEeCCCCCCCceeEEEEEecCc-ccCCCCcceEEEcc
Confidence            9999999999999999999996 44466688999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.77  E-value=6.1e-18  Score=143.98  Aligned_cols=99  Identities=20%  Similarity=0.322  Sum_probs=85.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      +.|.|+|++|++|++++.   .||||.|++++.+.+|++.++ . ||.|||+|.|.+......|.|+|||+|.+ .||+|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~~k~kT~v~~~-~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l   75 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDK---FNTYVTLKVQNVKSTTIAVRG-S-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV   75 (127)
T ss_pred             ceEEEEEEEeeCCCCCCC---CCCeEEEEECCEEeEeeECCC-C-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence            689999999999987663   589999999999999999865 4 99999999999987777799999999965 79999


Q ss_pred             EEEEEeCCccccC-CcceeeEEEccC
Q psy3181         127 AWAKIPIPSSVMK-GETHEDWFPLSG  151 (349)
Q Consensus       127 G~v~I~L~e~l~~-g~~~~~W~~L~~  151 (349)
                      |++.|+|++++.. .....+||+|.+
T Consensus        76 G~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          76 GTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEEEhHHcccCCCCCCCccEecCh
Confidence            9999999976653 333579999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=4.9e-18  Score=139.01  Aligned_cols=100  Identities=19%  Similarity=0.296  Sum_probs=88.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeE
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIA  127 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG  127 (349)
                      |.|+|++|++|+..+..+.+||||++++++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.   +++||
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            7899999999999998899999999999999999999876 56999999999999864 5789999999885   78999


Q ss_pred             EEEEeCCccccC-CcceeeEEEccCC
Q psy3181         128 WAKIPIPSSVMK-GETHEDWFPLSGK  152 (349)
Q Consensus       128 ~v~I~L~e~l~~-g~~~~~W~~L~~k  152 (349)
                      ++.++|.++... +...+.||+|.++
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            999999976553 2457899999854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.76  E-value=3.1e-18  Score=145.43  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG------HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS  109 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~  109 (349)
                      |+.+....+.|.|+|++|+||+..+..|.+||||++.+.      ....+|+++++ +.||+|||+|.|.++..   ...
T Consensus         6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~   84 (124)
T cd08680           6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKT   84 (124)
T ss_pred             EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCE
Confidence            366788899999999999999999888999999999974      24788998876 56999999999998764   589


Q ss_pred             EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      |.|+|||.+.++++++||++.|+|.+.-..+.....||.|
T Consensus        85 L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          85 LQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999999999999999999999999653444456789876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.76  E-value=4e-18  Score=143.31  Aligned_cols=109  Identities=16%  Similarity=0.209  Sum_probs=94.1

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|+||+..+..+.+||||+|.+.     ....+|+++++ +.||+|||+|.|.+...   ...|.
T Consensus         9 l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~   87 (127)
T cd04030           9 IRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLD   87 (127)
T ss_pred             EEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEE
Confidence            67788899999999999999999999999999999985     45789999887 45999999999998643   47899


Q ss_pred             EEEeecCCC--CCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSF--TMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~--skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |.|||++.+  +++++||++.++|.+ +..+.....||+|+
T Consensus        88 i~v~~~~~~~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~L~  127 (127)
T cd04030          88 VAVKNSKSFLSREKKLLGQVLIDLSD-LDLSKGFTQWYDLT  127 (127)
T ss_pred             EEEEECCcccCCCCceEEEEEEeccc-ccccCCccceEECc
Confidence            999999875  689999999999996 44455678999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=1.9e-17  Score=139.15  Aligned_cols=115  Identities=24%  Similarity=0.316  Sum_probs=98.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD  123 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd  123 (349)
                      .|+|+|++|++|+..+..|.+||||++.+++   ...+|++++++ .||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            5899999999999999999999999998864   36799998774 6999999999999774 57899999999998889


Q ss_pred             ceeEEEEEeCCcccc-C-CcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         124 ELIAWAKIPIPSSVM-K-GETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       124 d~LG~v~I~L~e~l~-~-g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      ++||++.++|.+... . +...+.|++|.+      .|.|++.+.+..
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEee
Confidence            999999999986433 2 556789999974      489999988864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=7.1e-18  Score=147.14  Aligned_cols=106  Identities=13%  Similarity=0.186  Sum_probs=90.5

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEe-ec
Q psy3181          45 PVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIY-DE  117 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~-D~  117 (349)
                      ..|.|.|+|++|+||+..+ ..|.+||||++.+..     .+.+|+++++ +.||+|||+|.|.+......|.|+|| |+
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~  105 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDY  105 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence            3689999999999998864 678999999999842     3789999876 56999999999999866789999999 68


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +.++++++||++.|+|++ +..+.....||+|.++
T Consensus       106 ~~~~~~~~iG~~~i~L~~-l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         106 GRMDKKVFMGVAQILLDD-LDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCCceEEEEEEEccc-ccCCCCceeEEecCCc
Confidence            888899999999999995 5445557899999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=5.1e-18  Score=148.31  Aligned_cols=102  Identities=13%  Similarity=0.284  Sum_probs=85.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEec-------------c---C
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLP-------------Q---G  106 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~-------------~---~  106 (349)
                      +|.|+|++|+||+.  .+|.+||||+|.+..     ...+|+++++ +.||+|||+|.|.+.             .   .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999988  568999999999975     5778999877 569999999999984             1   1


Q ss_pred             CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       107 ~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      ...|.|.|||++.+++|+|||++.|++.++...+.....||+|..+
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            3679999999999889999999999999644442457899999753

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.76  E-value=6.1e-18  Score=139.73  Aligned_cols=101  Identities=18%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEEEecCCCCCCCcc-ceEEEEEeccC---CeEEEEEEeecCCCCCC
Q psy3181          49 LNITVVQAKLVKNYGL-VTKMDPYVRLRVGHCVYETHTDPSGGKFPRW-NKEVFCLLPQG---VTSIYLEIYDECSFTMD  123 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~W-nEtF~F~V~~~---~~~L~I~V~D~d~~skd  123 (349)
                      |.|+|++|++|+.++. .|.+||||++.+++..++|+++++ +.||.| ||+|.|.++..   ...|.|+|||++.++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            6899999999999884 689999999999999999999877 459999 99999998764   47899999999999999


Q ss_pred             ceeEEEEEeCCccccC--CcceeeEEEcc
Q psy3181         124 ELIAWAKIPIPSSVMK--GETHEDWFPLS  150 (349)
Q Consensus       124 d~LG~v~I~L~e~l~~--g~~~~~W~~L~  150 (349)
                      ++||++.+++.++...  +...+.||+|.
T Consensus        80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9999999999976553  44578999986

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.76  E-value=8.8e-18  Score=141.10  Aligned_cols=105  Identities=23%  Similarity=0.366  Sum_probs=93.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecCCCCC
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDECSFTM  122 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d~~sk  122 (349)
                      |.|.|+|++|++|+..+..+.+||||++.+++...+|++.++++.||.|||+|.|.+...    ...|.|+|||.+.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            789999999999999998899999999999998899998876567999999999999765    5789999999999989


Q ss_pred             CceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         123 DELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +++||.+.+++.+++..+ ..+.|+.|.++
T Consensus        81 d~~iG~~~i~l~~l~~~~-~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEG-VEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCC-CCcCceEeecc
Confidence            999999999999766544 47899999764

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>PLN03008 Phospholipase D delta

Probab=99.76  E-value=1.4e-17  Score=176.24  Aligned_cols=133  Identities=24%  Similarity=0.416  Sum_probs=112.3

Q ss_pred             cccCCCCcceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEE
Q psy3181          38 ASSLIQNPVGRLNITVVQAKLVKNYGL------------------------------------------VTKMDPYVRLR   75 (349)
Q Consensus        38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~------------------------------------------~G~sDPYV~V~   75 (349)
                      +|++....+|+|.++|.+|++|+.+|.                                          .+++||||+|.
T Consensus         5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~   84 (868)
T PLN03008          5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV   84 (868)
T ss_pred             cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence            567888899999999999999986332                                          24679999999


Q ss_pred             ECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC
Q psy3181          76 VGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG  154 (349)
Q Consensus        76 lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g  154 (349)
                      +++. ..+|+++++ +.||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|.+ +..|...+.|++|....+
T Consensus        85 Lg~~rv~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~-L~~Ge~vd~Wl~Ll~~~~  161 (868)
T PLN03008         85 VPQATLARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRD-IASGERISGWFPVLGASG  161 (868)
T ss_pred             ECCcceeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHH-cCCCCceEEEEEccccCC
Confidence            9875 569999876 55999999999999887789999999999998 6899999999995 666777899999976443


Q ss_pred             --CCcceEEEEEEEEEEccce
Q psy3181         155 --EDKEGMINLVLSYTVSFFF  173 (349)
Q Consensus       155 --~~~~GeI~L~L~~~p~~~~  173 (349)
                        .+..|+|+|+++|.|....
T Consensus       162 kp~k~~~kl~v~lqf~pv~~~  182 (868)
T PLN03008        162 KPPKAETAIFIDMKFTPFDQI  182 (868)
T ss_pred             CCCCCCcEEEEEEEEEEcccc
Confidence              2346899999999998763

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.75  E-value=1.2e-17  Score=140.21  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=93.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEecc----CCeEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYL  112 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I  112 (349)
                      +.+....+.|.|+|++|+||+..+..|.+||||++.+.   ....+|+++++ +.||.|||+|.|.+..    ....|.+
T Consensus         9 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~   87 (125)
T cd08386           9 VSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYL   87 (125)
T ss_pred             EEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEE
Confidence            66778889999999999999999999999999999983   46789999877 5699999999998432    2467999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      +|||++.++++++||++.+++.+ +..+.....|+.|.
T Consensus        88 ~v~d~d~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~l~  124 (125)
T cd08386          88 QVLDYDRFSRNDPIGEVSLPLNK-VDLTEEQTFWKDLK  124 (125)
T ss_pred             EEEeCCCCcCCcEeeEEEEeccc-ccCCCCcceEEecC
Confidence            99999999999999999999996 44566688999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.75  E-value=8.1e-18  Score=139.19  Aligned_cols=99  Identities=20%  Similarity=0.355  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecC
Q psy3181          47 GRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDEC  118 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d  118 (349)
                      |+|+|+|++|++|+..+.. |.+||||+|.+.   ....+|+++++ +.||+|||+|.|.+...    ...|.|+|||+|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            7899999999999999988 999999999984   35689999887 56999999999987543    468999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .+++|++||++.+++.+++.    ...|+++.
T Consensus        80 ~~~~dd~lG~~~i~l~~l~~----~~~~~~~~  107 (111)
T cd04041          80 RFTADDRLGRVEIDLKELIE----DRNWMGRR  107 (111)
T ss_pred             CCCCCCcceEEEEEHHHHhc----CCCCCccc
Confidence            99999999999999997653    34788875

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1.3e-17  Score=139.16  Aligned_cols=108  Identities=15%  Similarity=0.314  Sum_probs=91.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      +.+....+.|.|+|++|+||+..+ ..+.+||||++.+..     ...+|+++++ +.||+|||+|.|.+...   ...|
T Consensus         7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l   85 (123)
T cd08521           7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTL   85 (123)
T ss_pred             EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEE
Confidence            566778899999999999999988 778999999998741     4678988766 56999999999998653   4689


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      .|+|||++.++++++||++.++|++. ..+...+.||+|
T Consensus        86 ~i~v~d~~~~~~~~~iG~~~i~l~~l-~~~~~~~~w~~l  123 (123)
T cd08521          86 QLSVWHHDRFGRNTFLGEVEIPLDSW-DLDSQQSEWYPL  123 (123)
T ss_pred             EEEEEeCCCCcCCceeeEEEEecccc-cccCCCccEEEC
Confidence            99999999999999999999999965 444557899987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.74  E-value=1.2e-17  Score=141.14  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=93.5

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIYL  112 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~I  112 (349)
                      +.+....+.|.|+|++|+||++.+..|.+||||++.+.   ..+.+|++.++  .||+|||+|.|. ++..   ...|.+
T Consensus         9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~   86 (124)
T cd08389           9 FEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRF   86 (124)
T ss_pred             EEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEE
Confidence            67788899999999999999999998999999998763   35778888654  599999999998 6542   578999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      +|||++.++++++||++.|+|+++ ..+.....||+|++
T Consensus        87 ~V~~~~~~~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p  124 (124)
T cd08389          87 RLYGVERMRKERLIGEKVVPLSQL-NLEGETTVWLTLEP  124 (124)
T ss_pred             EEEECCCcccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence            999999999999999999999964 55556889999963

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.74  E-value=1.3e-17  Score=140.30  Aligned_cols=102  Identities=16%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeec
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDE  117 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~  117 (349)
                      ..+.|.|+|++|+||++++ .|.+||||++.+..     .+.+|+++++ +.||+|||+|.|.+...  ...|.|+|||+
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~   87 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNK   87 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence            5689999999999999998 78999999999862     3668998876 55999999999998653  35789999999


Q ss_pred             CCCC-CCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         118 CSFT-MDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       118 d~~s-kdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      +..+ ++++||++.|+|.+.. .+...+.||.|
T Consensus        88 ~~~~~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l  119 (119)
T cd08685          88 LSKSRDSGLLGCMSFGVKSIV-NQKEISGWYYL  119 (119)
T ss_pred             CCCcCCCEEEEEEEecHHHhc-cCccccceEeC
Confidence            9876 4789999999999765 56657899986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.73  E-value=3.5e-17  Score=136.78  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=93.6

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      |+.+....+.|.|+|++|++|+..+ ..+.+||||++.+.   ....+|+++++ +.||+|||+|.|.++..   ...|.
T Consensus         6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~   84 (123)
T cd08390           6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLR   84 (123)
T ss_pred             EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEE
Confidence            3677888999999999999999998 68899999999974   35678888776 56999999999998653   46899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |+|||++..+++++||++.++|+++.. ......|++|.
T Consensus        85 i~v~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L~  122 (123)
T cd08390          85 LSVYDVDRFSRHCIIGHVLFPLKDLDL-VKGGVVWRDLE  122 (123)
T ss_pred             EEEEECCcCCCCcEEEEEEEeccceec-CCCceEEEeCC
Confidence            999999998889999999999996544 44477999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=2.9e-17  Score=135.96  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=80.0

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeecCCC
Q psy3181          47 GRLNITVVQAKLVKNYGLV----TKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDECSF  120 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~----G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~d~~  120 (349)
                      |.|.|+|++|++|++.+..    +.+||||+|.+++..++|+++++ +.||+|||.|.|.+.+.  ...|.|+|||+|.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            7899999999999987743    35899999999999999999987 46999999999998653  45799999999999


Q ss_pred             CCCceeEEEEEeCCcccc
Q psy3181         121 TMDELIAWAKIPIPSSVM  138 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~  138 (349)
                      ++|++||++.++|++++.
T Consensus        80 ~~dd~IG~~~l~L~~l~~   97 (108)
T cd04039          80 SFNDYVATGSLSVQELLN   97 (108)
T ss_pred             CCCcceEEEEEEHHHHHh
Confidence            999999999999996543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>KOG1028|consensus

Probab=99.73  E-value=4.6e-17  Score=164.18  Aligned_cols=160  Identities=18%  Similarity=0.211  Sum_probs=127.0

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+......|.|+|++|++|+.+|..|.+||||++.+.   ..+.+|++.++ +.||+|||+|.|.++..   ...|.+.
T Consensus       160 l~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~  238 (421)
T KOG1028|consen  160 LQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLS  238 (421)
T ss_pred             EEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEE
Confidence            77788999999999999999999977889999999986   35789999876 56999999999997654   6889999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC--CCCCcceEEEEEEEEEEccceeeeeeecCceeeeeeccc
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK--QGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHP  191 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k--~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~y~~~t~~~  191 (349)
                      |||.|+|++|++||++.++|.++-. ......|.+|...  ......|+|+++++|.|....+...+.        .+..
T Consensus       239 V~~~drfsr~~~iGev~~~l~~~~~-~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~--------kar~  309 (421)
T KOG1028|consen  239 VYDFDRFSRHDFIGEVILPLGEVDL-LSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVI--------KARN  309 (421)
T ss_pred             EEecCCcccccEEEEEEecCccccc-cccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEE--------EecC
Confidence            9999999999999999999885433 3336789999753  222334899999999999776533221        2211


Q ss_pred             cchhhhccCCCCCccccCCC
Q psy3181         192 LYAAKVFLGALPSDFLRPNN  211 (349)
Q Consensus       192 ~~~~k~~ig~lPd~flrv~~  211 (349)
                        ...+..+.++|+|++++.
T Consensus       310 --L~~~~~~~~~d~~Vk~~l  327 (421)
T KOG1028|consen  310 --LKSMDVGGLSDPYVKVTL  327 (421)
T ss_pred             --CCcccCCCCCCccEEEEE
Confidence              233456778899999885

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.73  E-value=4e-17  Score=138.86  Aligned_cols=110  Identities=12%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~  111 (349)
                      +.+....++|.|+|++|+||+..+.. |.+||||++.+.   .++.+|+++++ +.||.|||+|.|. ++..   ...|.
T Consensus         9 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~   87 (128)
T cd08388           9 LRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLH   87 (128)
T ss_pred             EEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEE
Confidence            56678889999999999999998876 899999999985   44678999877 5699999999994 5422   35799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccC-CcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMK-GETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~-g~~~~~W~~L~  150 (349)
                      ++|||+|.+++|++||++.++|.++-.. +.....|.+|+
T Consensus        88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          88 FAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999999999999999999999965332 23367788875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.72  E-value=6.3e-17  Score=136.14  Aligned_cols=103  Identities=23%  Similarity=0.296  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~  125 (349)
                      |.|.|+|++|++|+..+..|.+||||+|.+++ ...+|+++.+ +.||.|||+|.|.+......|.|+|||++.+++|++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            78999999999999999999999999999976 5688888766 569999999999988777899999999999999999


Q ss_pred             eEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         126 IAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       126 LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      ||++.+++.+++..  ..+.||.|..+
T Consensus        80 IG~~~~~l~~l~~~--~~~~~~~~~~~  104 (120)
T cd04045          80 LGSVEINVSDLIKK--NEDGKYVEYDD  104 (120)
T ss_pred             eeEEEEeHHHhhCC--CCCceEEecCC
Confidence            99999999976654  35788888654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=1.2e-16  Score=132.11  Aligned_cols=111  Identities=23%  Similarity=0.346  Sum_probs=88.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCCCc
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~skdd  124 (349)
                      |.|+|++|++|+..   |.+||||++.+++. ..+|+++++  .||.|||+|.|.+...   ...|.|.+||.+..+++.
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999877   78999999999875 478998766  5999999999998763   467888999988776666


Q ss_pred             eeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEE
Q psy3181         125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSY  167 (349)
Q Consensus       125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~  167 (349)
                      ++|.+.+...   ..+...+.||+|.+..+ ....|+|+|+++|
T Consensus        77 ~~g~v~l~~~---~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALSKL---DLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEecCc---CCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            6776555443   33556789999986533 4568999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.72  E-value=5.4e-17  Score=143.74  Aligned_cols=107  Identities=16%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEecc----CCeEEEEE
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLE  113 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~  113 (349)
                      ..+.|.|.|+|++|+||+..+..|.+||||++.+.     ...++|++++++ .||.|||+|.|.+..    .+..|.|+
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            34789999999999999999999999999999873     357899998874 599999999998532    23679999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |||++.++++++||++.+++.++...+ ..+.|+.|.+
T Consensus       102 V~d~d~~~~d~~lG~v~i~l~~~~~~~-~~~~w~~~~~  138 (162)
T cd04020         102 VWDHDKLSSNDFLGGVRLGLGTGKSYG-QAVDWMDSTG  138 (162)
T ss_pred             EEeCCCCCCCceEEEEEEeCCccccCC-CccccccCCh
Confidence            999999999999999999999654444 3678888754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.71  E-value=6.9e-17  Score=141.68  Aligned_cols=104  Identities=18%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEec--cCCeEEE
Q psy3181          48 RLNITVVQAKLVKNYGLVT--------------KMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP--QGVTSIY  111 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G--------------~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~--~~~~~L~  111 (349)
                      .|.|+|++|++|+.+|..+              .+||||+|.+++.+.+|+++++ +.||+|||+|.|.+.  .....|.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEE
Confidence            3789999999999988554              6899999999999999999887 459999999999864  3357899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCc------ceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGE------THEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~------~~~~W~~L~~k  152 (349)
                      |+|||+|..++|++||.+.+++.++...+.      ..+.|+.|.+.
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~  126 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS  126 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence            999999999999999999999996655442      34688888754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.71  E-value=2.7e-17  Score=139.74  Aligned_cols=110  Identities=16%  Similarity=0.263  Sum_probs=93.6

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      |+.+....|.|.|+|++|+||+..+..|.+||||+|.+.     ....+|+++++ +.||+|||+|.|.+...   ...|
T Consensus         5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l   83 (133)
T cd08384           5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTL   83 (133)
T ss_pred             EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEE
Confidence            367788899999999999999999999999999999985     24678999876 56999999999998653   4689


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      .|+|||+|..+++++||++.+++..   .+....+|+.+...
T Consensus        84 ~~~V~d~d~~~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~  122 (133)
T cd08384          84 EITVWDKDIGKSNDYIGGLQLGINA---KGERLRHWLDCLKN  122 (133)
T ss_pred             EEEEEeCCCCCCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence            9999999999899999999999984   34446789987543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.70  E-value=1.7e-16  Score=131.10  Aligned_cols=101  Identities=21%  Similarity=0.300  Sum_probs=85.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-----CeEEEEEEeecCCC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-----VTSIYLEIYDECSF  120 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~~~L~I~V~D~d~~  120 (349)
                      .-.|+|+|++|++|+    .|.+||||++++++++.+|+++++ +.||.|||+|.|.+...     ...|.|+|||++.+
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            346899999999998    578999999999999999999876 45999999999997533     36799999999999


Q ss_pred             CCCceeEEEEEeCCccccC--CcceeeEEEccC
Q psy3181         121 TMDELIAWAKIPIPSSVMK--GETHEDWFPLSG  151 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~~--g~~~~~W~~L~~  151 (349)
                      +++++||++.++|+++...  ......|++|.+
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            9899999999999965442  244678999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.70  E-value=1.7e-16  Score=131.40  Aligned_cols=102  Identities=21%  Similarity=0.385  Sum_probs=86.6

Q ss_pred             CCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeEEEEEeCCccccCC
Q psy3181          63 GLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG  140 (349)
Q Consensus        63 d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g  140 (349)
                      ..+|.+||||+|.+++. ..+|+++++ +.||.|||+|.|.+.+. ...|.|.|||++.+ ++++||.+.++|++++..+
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            35789999999999874 578888766 56999999999999765 57799999999998 8999999999999776655


Q ss_pred             cceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181         141 ETHEDWFPLSGKQGEDKEGMINLVLSYTVS  170 (349)
Q Consensus       141 ~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~  170 (349)
                      ...+.||+|.+.    ..|+|++++.|.|.
T Consensus        86 ~~~~~w~~L~~~----~~G~i~~~~~~~p~  111 (111)
T cd04052          86 SVGQQWFPLSGN----GQGRIRISALWKPV  111 (111)
T ss_pred             hccceeEECCCC----CCCEEEEEEEEecC
Confidence            557899999852    46999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=1.8e-16  Score=138.14  Aligned_cols=91  Identities=27%  Similarity=0.446  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~  125 (349)
                      .|.|.|+|++|++|+..+. +.+||||+++++++..+|+++++ +.||+|||+|.|.+.+....+.|+|||++.+++|++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~   78 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDS   78 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCE
Confidence            3889999999999998887 89999999999999999999887 569999999999998888899999999999999999


Q ss_pred             eEEEEEeCCcccc
Q psy3181         126 IAWAKIPIPSSVM  138 (349)
Q Consensus       126 LG~v~I~L~e~l~  138 (349)
                      ||.+.+++.+++.
T Consensus        79 iG~a~i~l~~l~~   91 (145)
T cd04038          79 MGEAEIDLEPLVE   91 (145)
T ss_pred             EEEEEEEHHHhhh
Confidence            9999999997554

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.69  E-value=1.6e-16  Score=135.80  Aligned_cols=108  Identities=16%  Similarity=0.221  Sum_probs=91.0

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|.|+|++|++|+..+..|.+||||+|.+.  +   ...+|+++++ +.||.|||+|.|.++..   ...|.
T Consensus         8 l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~   86 (136)
T cd08402           8 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLI   86 (136)
T ss_pred             eEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEE
Confidence            77888999999999999999999999999999999984  2   3567887665 56999999999998643   35799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |+|||++.+++|++||++.+++.. .  +....+|+++..
T Consensus        87 ~~v~d~~~~~~~~~iG~~~i~~~~-~--~~~~~~W~~~~~  123 (136)
T cd08402          87 VTVLDYDRIGKNDPIGKVVLGCNA-T--GAELRHWSDMLA  123 (136)
T ss_pred             EEEEeCCCCCCCceeEEEEECCcc-C--ChHHHHHHHHHh
Confidence            999999999999999999999983 2  444567888754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.69  E-value=4.3e-16  Score=128.72  Aligned_cols=112  Identities=27%  Similarity=0.355  Sum_probs=94.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L  126 (349)
                      |+|+|++|++|+..+..|.+||||+|.+++ ...+|+++.+ +.+|.|||+|.|.+... ...+.|+|||++..+++++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            579999999999999889999999999975 4578998776 66999999999998764 67899999999999899999


Q ss_pred             EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEE
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINL  163 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L  163 (349)
                      |++.+++.+ +..+...+.|++|.++. ....|.+.+
T Consensus        80 G~~~~~l~~-l~~~~~~~~~~~L~~~g-~~~~~~~~~  114 (115)
T cd04040          80 GSAYIDLSD-LEPEETTELTLPLDGQG-GGKLGAVFL  114 (115)
T ss_pred             EEEEEEHHH-cCCCCcEEEEEECcCCC-CccCceEEc
Confidence            999999996 44555688999998653 345577654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.69  E-value=6.6e-17  Score=138.27  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEecc---CCeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQ---GVTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~---~~~~L~  111 (349)
                      +.+....+.|.|+|++|+||+..|..|.+||||++.+..     ...+|+++++ +.||.|||+|.|.++.   ....|.
T Consensus         8 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~   86 (136)
T cd08404           8 LCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVE   86 (136)
T ss_pred             EEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEE
Confidence            556677889999999999999999999999999998842     2567887766 5699999999999864   246799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |+|||+|.++++++||++.+++..   .+....+|+.|..
T Consensus        87 ~~v~d~d~~~~~~~iG~~~~~~~~---~~~~~~~w~~l~~  123 (136)
T cd08404          87 FLVLDSDRVTKNEVIGRLVLGPKA---SGSGGHHWKEVCN  123 (136)
T ss_pred             EEEEECCCCCCCccEEEEEECCcC---CCchHHHHHHHHh
Confidence            999999999999999999999995   3445678998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.68  E-value=5.1e-17  Score=138.81  Aligned_cols=110  Identities=18%  Similarity=0.291  Sum_probs=92.4

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      |+.+....|+|.|+|++|+||+..+..|.+||||+|.+.  +   ...+|+++++ +.||.|||+|.|.++..   ...|
T Consensus         7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l   85 (136)
T cd08405           7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTL   85 (136)
T ss_pred             EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEE
Confidence            377888899999999999999999999999999999883  2   3568888876 55999999999998632   4689


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      .|+|||++.++++++||++.+++.+.   +...+.|+.+...
T Consensus        86 ~~~v~d~~~~~~~~~lG~~~i~~~~~---~~~~~~w~~~~~~  124 (136)
T cd08405          86 IITVMDKDRLSRNDLIGKIYLGWKSG---GLELKHWKDMLSK  124 (136)
T ss_pred             EEEEEECCCCCCCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence            99999999999999999999999853   4446678887644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=5.1e-17  Score=140.05  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=90.9

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      |+.+....+.|.|+|++|+||+..+..|.+||||+|.+..     .+.+|++.++ +.||+|||+|.|.++..   +..|
T Consensus         7 sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l   85 (136)
T cd08406           7 SLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSL   85 (136)
T ss_pred             EEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEE
Confidence            4777888999999999999999999899999999999842     2557888766 56999999999998753   5889


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      .|+|||+|.++++++||++.+...   ..|...++|..+..
T Consensus        86 ~~~V~~~d~~~~~~~iG~v~lg~~---~~g~~~~hW~~ml~  123 (136)
T cd08406          86 RVTVAESTEDGKTPNVGHVIIGPA---ASGMGLSHWNQMLA  123 (136)
T ss_pred             EEEEEeCCCCCCCCeeEEEEECCC---CCChhHHHHHHHHH
Confidence            999999999999999999999765   23454667877653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.68  E-value=3.9e-16  Score=134.38  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--eEEEEEecCCCCCCCccceEEEEEeccC--CeEEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---H--CVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIY  111 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~  111 (349)
                      |+++.++.|+|+|.|++|+||+.++..+..||||+|.+.   .  .+.+|++.+++..+|.|||+|.|.++..  +..|.
T Consensus         6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~   85 (135)
T cd08692           6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL   85 (135)
T ss_pred             EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence            588999999999999999999998666778999999874   1  3678888777555799999999999754  46788


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |+|||++..+++++||++.+..+..  .+...++|....
T Consensus        86 v~v~d~~~~~~n~~IG~v~lG~~~~--~~~~~~hW~~m~  122 (135)
T cd08692          86 IKLYSRSSVRRKHFLGQVWISSDSS--SSEAVEQWKDTI  122 (135)
T ss_pred             EEEEeCCCCcCCceEEEEEECCccC--CchhhhhHHHHH
Confidence            9999999999999999999999742  233356776653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=3.3e-16  Score=133.64  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEec--cCCeEEEEEEeecCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP--QGVTSIYLEIYDECSF  120 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~--~~~~~L~I~V~D~d~~  120 (349)
                      ....|.|.|+|++|++|+. +..|.+||||+|.+++..++|+++++ +.||+|||+|.|...  .....|.|+|||++.+
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            4567899999999999984 67789999999999999999999987 459999999999743  2468999999999999


Q ss_pred             CCCceeEEEEEeCCc
Q psy3181         121 TMDELIAWAKIPIPS  135 (349)
Q Consensus       121 skdd~LG~v~I~L~e  135 (349)
                      ++|++||++.++|..
T Consensus       102 s~dd~IG~~~i~l~~  116 (127)
T cd04032         102 WDDDLLGTCSVVPEA  116 (127)
T ss_pred             CCCCeeEEEEEEecC
Confidence            999999999999994

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.67  E-value=1.3e-16  Score=137.92  Aligned_cols=108  Identities=20%  Similarity=0.296  Sum_probs=90.3

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---Ce
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VT  108 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~  108 (349)
                      |+.+.+..+.|.|+|++|+||+.++.  .+.+||||+|.+..     .+.+|++.++ +.||+|||+|.|.++..   +.
T Consensus         7 sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~   85 (138)
T cd08407           7 SISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAAS   85 (138)
T ss_pred             EEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCcc
Confidence            47788999999999999999999983  35599999999853     2567888766 56999999999999864   57


Q ss_pred             EEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       109 ~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .|.|+|||+|.++++++||++.+.+..   .|+...+|..+.
T Consensus        86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~---~g~~~~hW~~ml  124 (138)
T cd08407          86 SVELEVLNQDSPGQSLPLGRCSLGLHT---SGTERQHWEEML  124 (138)
T ss_pred             EEEEEEEeCCCCcCcceeceEEecCcC---CCcHHHHHHHHH
Confidence            899999999999999999999999873   455566777664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.67  E-value=1.8e-15  Score=132.02  Aligned_cols=120  Identities=19%  Similarity=0.290  Sum_probs=98.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCC-CC-
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECS-FT-  121 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~-~s-  121 (349)
                      ....|.|.|++|++|+.++     +|||.|.+++.. .+|++..+ +.||.|+|.|.|........+.|.||+.+. .+ 
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence            4567999999999998875     699999999877 59999877 459999999999876666889999986543 22 


Q ss_pred             --CCceeEEEEEeCCccccCCcceeeEEEccCCCCC---------CcceEEEEEEEEEEcc
Q psy3181         122 --MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE---------DKEGMINLVLSYTVSF  171 (349)
Q Consensus       122 --kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~---------~~~GeI~L~L~~~p~~  171 (349)
                        ++++||.+.|++++ +..+...+.||+|.+..+.         ...+.|+|+++|.+..
T Consensus        83 ~~~~~~IG~V~Ip~~~-l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          83 KDKSQLIGTVNIPVTD-VSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             ccCCcEEEEEEEEHHH-hcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence              57899999999995 5567779999999764432         3457999999998754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.67  E-value=1.6e-15  Score=131.00  Aligned_cols=115  Identities=16%  Similarity=0.283  Sum_probs=92.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEEEecCCCCCCCcc-ceEEEEEeccCCeEEEEE
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------------CVYETHTDPSGGKFPRW-NKEVFCLLPQGVTSIYLE  113 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------------~~~kTkvvk~~~~nP~W-nEtF~F~V~~~~~~L~I~  113 (349)
                      +..|++++|+||+ .+.+|++||||++.+..             +.++|+++++ +.||+| ||+|.|.+.. +..|.|+
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence            4679999999998 77889999999999842             3689999877 569999 9999999864 4689999


Q ss_pred             EeecCCCCC---CceeEEEEEeCCccccCC--cceeeEEEccCCC-CCCcceEEEEEE
Q psy3181         114 IYDECSFTM---DELIAWAKIPIPSSVMKG--ETHEDWFPLSGKQ-GEDKEGMINLVL  165 (349)
Q Consensus       114 V~D~d~~sk---dd~LG~v~I~L~e~l~~g--~~~~~W~~L~~k~-g~~~~GeI~L~L  165 (349)
                      |||++..++   +++||++.+++.+++..+  .....||+|..+. .....|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999875443   799999999999766543  3367899997432 246779998865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=4.6e-16  Score=133.99  Aligned_cols=101  Identities=17%  Similarity=0.382  Sum_probs=87.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEEEecCCCCCCCccceEEEEEeccC----------------Ce
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG----HCVYETHTDPSGGKFPRWNKEVFCLLPQG----------------VT  108 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----------------~~  108 (349)
                      |.|+|++|++|+.+ ..|.+||||+|.++    ....+|+++++ +.||.|||+|.|.+...                ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence            67999999999988 77999999999998    67899999887 55999999999997653                46


Q ss_pred             EEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       109 ~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      .|.|+|||++..+++++||++.+++.++.. ......||+|..+
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~  121 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence            899999999998889999999999996554 4447899999865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.67  E-value=1.7e-15  Score=133.46  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=91.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEeccC---------CeEEEE
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLLPQG---------VTSIYL  112 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---------~~~L~I  112 (349)
                      |.|.|....+.+|+..+..+.+||||++.+     ..++.+|+++++ +.||+|||+|.|.+...         ...|.+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            344444444444778888889999999986     246899999887 55999999999998654         356999


Q ss_pred             EEeecCCC-CCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         113 EIYDECSF-TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       113 ~V~D~d~~-skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      +|||++.+ ++|++||++.++|+. +........|++|.. +.....|.|++++...
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~-l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEP-LETKCEIHESVDLMD-GRKATGGKLEVKVRLR  137 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEccc-ccccCcceEEEEhhh-CCCCcCCEEEEEEEec
Confidence            99999986 479999999999995 444434567999873 2346789999999873

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.67  E-value=5.2e-16  Score=136.45  Aligned_cols=100  Identities=24%  Similarity=0.385  Sum_probs=86.2

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEEEEEecCCCCCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----------------------------CVYETHTDPSGGKFP   93 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----------------------------~~~kTkvvk~~~~nP   93 (349)
                      .++.+.|.|+|++|++|+.+|.+|.+||||+|.++.                             ...+|+++++ +.||
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP  102 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP  102 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence            788999999999999999999999999999999853                             2367888776 5699


Q ss_pred             ccceEEEEEeccC-CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181          94 RWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus        94 ~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      .|||+|.|.+... ...|.|+|||++    +++||++.++++++..  ...+.||+|
T Consensus       103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~--~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS--CGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC--CCCCCeEeC
Confidence            9999999998753 578999999998    8899999999997653  236899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.66  E-value=2.5e-15  Score=125.92  Aligned_cols=115  Identities=21%  Similarity=0.338  Sum_probs=94.9

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecC
Q psy3181          48 RLNITVVQAKLVKNYG--LVTKMDPYVRLRV------GHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDEC  118 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d--~~G~sDPYV~V~l------g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d  118 (349)
                      .|+|+|++|++|+..+  ..+.+||||++++      .....+|+++.+++.||.|||+|.|.+... ...|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999888  5789999999998      345689998776556999999999998754 367999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCC-CcceEEEEEEEE
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE-DKEGMINLVLSY  167 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~-~~~GeI~L~L~~  167 (349)
                      .. ++++||.+.+++++ +..|.   .|++|..+.+. ...|.|.+.+++
T Consensus        83 ~~-~~~~iG~~~~~l~~-l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDS-LRQGY---RHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHH-hcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence            88 89999999999995 55553   78899765443 456899888775

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.66  E-value=1.8e-16  Score=135.15  Aligned_cols=109  Identities=20%  Similarity=0.316  Sum_probs=89.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|+|+|++|++|++.+..|.+||||+|.+..     ...+|+++++ +.||.|||+|.|.++..   ...|.
T Consensus         7 ~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~   85 (134)
T cd08403           7 LCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLI   85 (134)
T ss_pred             EEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEE
Confidence            566788899999999999999999999999999999842     3567887655 56999999999998643   35699


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |+|||++.++++++||++.+++. ..  +...+.|+.+...
T Consensus        86 ~~v~d~~~~~~~~~IG~~~l~~~-~~--~~~~~~w~~~~~~  123 (134)
T cd08403          86 IAVVDYDRVGHNELIGVCRVGPN-AD--GQGREHWNEMLAN  123 (134)
T ss_pred             EEEEECCCCCCCceeEEEEECCC-CC--CchHHHHHHHHHC
Confidence            99999999999999999999987 22  3335678877543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.66  E-value=1.7e-15  Score=128.16  Aligned_cols=116  Identities=23%  Similarity=0.374  Sum_probs=93.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~  125 (349)
                      ..|.|+|++|+ |...+..+.+||||+|.+++. ..+|+++++ +.||.|||+|.|.+.. ...|.|+|||++..+++++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcE
Confidence            46899999998 555555889999999999877 889999876 5699999999999864 4789999999999999999


Q ss_pred             eEEEEEeCCccccC--Ccce--eeEEEccCCC--CCCcceEEEEEE
Q psy3181         126 IAWAKIPIPSSVMK--GETH--EDWFPLSGKQ--GEDKEGMINLVL  165 (349)
Q Consensus       126 LG~v~I~L~e~l~~--g~~~--~~W~~L~~k~--g~~~~GeI~L~L  165 (349)
                      ||++.++|.+++..  +...  ..|++|....  .....|.|.+.+
T Consensus        79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999976542  3222  2488886332  235679998865

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.66  E-value=2.5e-16  Score=134.99  Aligned_cols=110  Identities=17%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|.|+|++|++|+..+..|.+||||++.+.  .   ...+|+++++ +.||.|||+|.|.++..   ...|.
T Consensus         7 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~   85 (135)
T cd08410           7 LNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLV   85 (135)
T ss_pred             EEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEE
Confidence            66778889999999999999999999999999999973  2   3568888776 56999999999998643   34799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |+|||+|..+++++||++.+...  ...+...++|+.|...
T Consensus        86 ~~V~d~d~~~~~~~iG~~~l~~~--~~~~~~~~~W~~l~~~  124 (135)
T cd08410          86 FTVYGHNVKSSNDFIGRIVIGQY--SSGPSETNHWRRMLNS  124 (135)
T ss_pred             EEEEeCCCCCCCcEEEEEEEcCc--cCCchHHHHHHHHHhC
Confidence            99999999999999999987654  1222235678887643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=5.5e-16  Score=132.31  Aligned_cols=97  Identities=12%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEEEecCCCCCCCccceEEEEEeccC-----C
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-------HCVYETHTDPSGGKFPRWNKEVFCLLPQG-----V  107 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~  107 (349)
                      +.+....+.|.|+|++|++|+..+..|.+||||+|.+.       ....+|++++++ .||+|||+|.|.+...     .
T Consensus         9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~   87 (133)
T cd04009           9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEG   87 (133)
T ss_pred             EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCC
Confidence            44566778999999999999999999999999999985       347899998774 5999999999998652     4


Q ss_pred             eEEEEEEeecCCCCCCceeEEEEEeCCccc
Q psy3181         108 TSIYLEIYDECSFTMDELIAWAKIPIPSSV  137 (349)
Q Consensus       108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~l  137 (349)
                      ..|.|+|||++.++++++||++.++|+++.
T Consensus        88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            689999999999999999999999999654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.66  E-value=7.3e-16  Score=130.21  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=89.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCc
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCV--YETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~--~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd  124 (349)
                      .|+|.|++|++|+..|..|.+||||++.+++..  .+|+++++ +.||+|||+|.|.+.. ....|.|+|||+|.+++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            378999999999999999999999999998765  46777776 5699999999998754 3578999999999999999


Q ss_pred             eeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      +||++.+++++.+..+  +..|+-+...  ....|.++....+.|
T Consensus        80 ~iG~~~i~l~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~  120 (124)
T cd04037          80 LIGETVIDLEDRFFSK--HRATCGLPPT--YEESGPNQWRDSLKP  120 (124)
T ss_pred             eeEEEEEeecccccch--HHHhccCCCc--ccccCceecCcccCc
Confidence            9999999999655321  2223333221  224577776555444

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.65  E-value=2.2e-16  Score=133.35  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....++|.|+|++|+||+..+..+.+||||++.+..     ...+|+++.+ +.||.|||+|.|.+...   ...|.
T Consensus         7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~   85 (134)
T cd00276           7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLV   85 (134)
T ss_pred             EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEE
Confidence            566777899999999999999999889999999999853     2568888776 55999999999998764   47899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |+|||.+..+++++||.+.+++++   .+...++|+.|...
T Consensus        86 ~~v~d~~~~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~  123 (134)
T cd00276          86 ITVVDKDSVGRNEVIGQVVLGPDS---GGEELEHWNEMLAS  123 (134)
T ss_pred             EEEEecCCCCCCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence            999999988889999999999996   45557899999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=2.1e-16  Score=136.36  Aligned_cols=109  Identities=18%  Similarity=0.322  Sum_probs=90.6

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS  109 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~  109 (349)
                      |+.+....++|.|+|++|+||+..+..|.+||||++.+..      .+.+|++.++ +.||+|||+|.|.++..   ...
T Consensus         7 sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~   85 (138)
T cd08408           7 GLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVT   85 (138)
T ss_pred             EeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccE
Confidence            4677889999999999999999999999999999998842      2468998876 56999999999999753   578


Q ss_pred             EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |.|+|||.+.++++++||++.+++.. .. ....++|+.+.
T Consensus        86 L~~~V~~~~~~~~~~~iG~v~l~~~~-~~-~~~~~hW~~~l  124 (138)
T cd08408          86 LMFSVYNKRKMKRKEMIGWFSLGLNS-SG-EEEEEHWNEMK  124 (138)
T ss_pred             EEEEEEECCCCCCCcEEEEEEECCcC-CC-chHHHHHHHHH
Confidence            99999999999999999999998873 22 12246788875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.65  E-value=1.3e-15  Score=129.00  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=89.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeecCC
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDECS  119 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~d~  119 (349)
                      +.|.|+|++|++|+..+..+.+||||+|.+.     ....+|+++++ +.+|.|||+|.|.+...  ...|.|+|||++.
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            8999999999999999888999999999986     35789999877 45999999999998654  4789999999998


Q ss_pred             CCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      .+++++||++.++++++...  ..+.||+|...
T Consensus        92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~  122 (131)
T cd04026          92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQ  122 (131)
T ss_pred             CCCcceeEEEEEeHHHhCcC--ccCceEECcCc
Confidence            88899999999999976543  47899999753

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=1.7e-15  Score=127.06  Aligned_cols=106  Identities=21%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L  110 (349)
                      +.+....+.|.|+|++|++|+..+..+.+||||++.+.     ....+|++++++ .||.|||+|.|. +...   ...+
T Consensus         8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l   86 (123)
T cd04035           8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTL   86 (123)
T ss_pred             EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEE
Confidence            67788889999999999999999988999999999873     246899998774 599999999996 3322   4689


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEE
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFP  148 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~  148 (349)
                      .|+|||++.+ .+++||++.++++++. .+...+-|+.
T Consensus        87 ~~~v~d~~~~-~~~~iG~~~i~l~~l~-~~~~~~~~~~  122 (123)
T cd04035          87 RLLVLDEDRF-GNDFLGETRIPLKKLK-PNQTKQFNIC  122 (123)
T ss_pred             EEEEEEcCCc-CCeeEEEEEEEcccCC-CCcceEeecc
Confidence            9999999988 7999999999999654 4433444443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.64  E-value=4.6e-16  Score=133.82  Aligned_cols=110  Identities=15%  Similarity=0.212  Sum_probs=90.9

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      |+.+....+.|.|+|++|+||+..+ .+.+||||++.+..     .+.+|++.++ +.||+|||+|.|.++..   ...|
T Consensus         7 sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L   84 (137)
T cd08409           7 SLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASL   84 (137)
T ss_pred             EEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEE
Confidence            3667788899999999999999988 78899999998752     3568888765 56999999999998643   4789


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      .|+|||.+..+++++||++.+... ....+...++|..+..
T Consensus        85 ~~~V~~~~~~~~~~~lG~v~ig~~-~~~~~~~~~hW~~~~~  124 (137)
T cd08409          85 SLSVMQSGGVRKSKLLGRVVLGPF-MYARGKELEHWNDMLS  124 (137)
T ss_pred             EEEEEeCCCCCCcceEEEEEECCc-ccCCChHHHHHHHHHh
Confidence            999999999999999999999976 3445555677887653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG0696|consensus

Probab=99.61  E-value=2.2e-16  Score=155.60  Aligned_cols=105  Identities=19%  Similarity=0.243  Sum_probs=91.3

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEee
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYD  116 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D  116 (349)
                      .....|+|+|.+|+||-++|.+|.+||||++++-     ..+.+|++++. ++||+|||+|+|.+.+.  +..|.|+|||
T Consensus       177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWD  255 (683)
T KOG0696|consen  177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWD  255 (683)
T ss_pred             ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEec
Confidence            3456799999999999999999999999999984     34788999887 56999999999998765  6889999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      ||+.+++||||..++.++++....  .+.||.|.+
T Consensus       256 WDrTsRNDFMGslSFgisEl~K~p--~~GWyKlLs  288 (683)
T KOG0696|consen  256 WDRTSRNDFMGSLSFGISELQKAP--VDGWYKLLS  288 (683)
T ss_pred             ccccccccccceecccHHHHhhcc--hhhHHHHhh
Confidence            999999999999999999765533  678998864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.58  E-value=4.2e-15  Score=169.73  Aligned_cols=123  Identities=17%  Similarity=0.308  Sum_probs=101.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEee
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYD  116 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D  116 (349)
                      +.+....|.|.|+|++|+||.  +.+|.+||||++++|+. +.+|++++++ .||+|||+|+|.+.++  +..|+|+|||
T Consensus      1973 ~~~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d 2049 (2102)
T PLN03200       1973 SLLQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKS 2049 (2102)
T ss_pred             HHHhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEe
Confidence            345567899999999999998  55799999999999955 8899999875 5999999999777654  4789999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceE---EEEEEEEEE
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGM---INLVLSYTV  169 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~Ge---I~L~L~~~p  169 (349)
                      +|.+++ +.||.+.|++.+++..+. ...||+|.++.  ++.|.   |++++.|.+
T Consensus      2050 ~d~f~k-d~~G~~~i~l~~vv~~~~-~~~~~~L~~~~--~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2050 KNTFGK-SSLGKVTIQIDRVVMEGT-YSGEYSLNPES--NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             cCccCC-CCCceEEEEHHHHhcCce-eeeeeecCccc--ccCCCcceEEEEEEecC
Confidence            999974 589999999997666554 88999998532  24577   999988864

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.58  E-value=2e-14  Score=120.30  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=81.1

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEEEecCCCCCCCccceEEEEEec-cCCeEEEEEEeecCC----C
Q psy3181          53 VVQAKLVKNYGLVTKMDPYVRLRVGHC-------VYETHTDPSGGKFPRWNKEVFCLLP-QGVTSIYLEIYDECS----F  120 (349)
Q Consensus        53 Iv~ArnL~~~d~~G~sDPYV~V~lg~~-------~~kTkvvk~~~~nP~WnEtF~F~V~-~~~~~L~I~V~D~d~----~  120 (349)
                      .++|++|+..+..|.+||||+|.+.+.       ..+|+++++ +.||+|||+|.|.+. +....|.|+|||+|.    +
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            478999999999999999999998654       489999887 459999999999864 345789999999997    7


Q ss_pred             CCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         121 TMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      +++++||++.+++.+++. +.....|+.|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVS-SPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhc-CCCcEEEEEcc
Confidence            899999999999997554 44466788884

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.54  E-value=1e-13  Score=116.64  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeec------
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDE------  117 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~------  117 (349)
                      |.|+|.+|+||+     |.+||||++.+..     ...+|+++++ +.||+|||+|.|.+.. ...|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence            689999999995     4589999998852     4689999977 5699999999999964 68999999998      


Q ss_pred             -CCCCCCceeEEEEEeCCc
Q psy3181         118 -CSFTMDELIAWAKIPIPS  135 (349)
Q Consensus       118 -d~~skdd~LG~v~I~L~e  135 (349)
                       |..++|++||.+.+.|+.
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccCcccEEEEEEEEECH
Confidence             567889999999999873

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.49  E-value=2.2e-13  Score=111.90  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEEEecCCCCCCCccceEEEEEecc-----CCeEEEEEEeecCC
Q psy3181          51 ITVVQAKLVKNYGLVTKMDPYVRLRVGHC------VYETHTDPSGGKFPRWNKEVFCLLPQ-----GVTSIYLEIYDECS  119 (349)
Q Consensus        51 V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~------~~kTkvvk~~~~nP~WnEtF~F~V~~-----~~~~L~I~V~D~d~  119 (349)
                      +-.++|++|+..|..|.+||||++.+.+.      .++|+++++ +.||+|| +|.|.+..     ....|.|+|||++.
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            44569999999999999999999987542      589999887 4699999 78887532     15789999999999


Q ss_pred             CCCCceeEEEEEeCCccc
Q psy3181         120 FTMDELIAWAKIPIPSSV  137 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~l  137 (349)
                      .++|++||++.++++++.
T Consensus        82 ~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          82 SGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCcEEEEEEEEHHHHh
Confidence            999999999999999655

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.47  E-value=2.5e-13  Score=104.34  Aligned_cols=81  Identities=33%  Similarity=0.480  Sum_probs=72.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCc
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd  124 (349)
                      |.|+|++|+||+..+..+..||||++.+++   ...+|++..++ .+|.|||+|.|.+.. ....|.|+|||++..++|+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence            789999999999988889999999999986   67999998875 599999999999654 3466999999999999999


Q ss_pred             eeEEEE
Q psy3181         125 LIAWAK  130 (349)
Q Consensus       125 ~LG~v~  130 (349)
                      +||++.
T Consensus        80 ~iG~~~   85 (85)
T PF00168_consen   80 LIGEVK   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02270 phospholipase D alpha

Probab=99.43  E-value=3.6e-12  Score=135.42  Aligned_cols=127  Identities=19%  Similarity=0.277  Sum_probs=105.8

Q ss_pred             CcceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEec
Q psy3181          44 NPVGRLNITVVQAKLVKNYG------------------LVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLP  104 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d------------------~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~  104 (349)
                      ..+|+|.|+|.+|++|+.++                  ..+++||||.|.+++ ...+|+++.+...||.|+|.|.+.+.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            56899999999999998632                  125689999999986 46699999875569999999999999


Q ss_pred             cCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc--ceEEEEEEEEEEccc
Q psy3181         105 QGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK--EGMINLVLSYTVSFF  172 (349)
Q Consensus       105 ~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~--~GeI~L~L~~~p~~~  172 (349)
                      .....+.|+|.|.|.++ .++||.+.||+.+ +..|...+.|+++.+.++...  ...|+++++|+|...
T Consensus        85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~-~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEE-ILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cCcceEEEEEecCCccC-ceEEEEEEEEHHH-hcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            88899999999999888 5699999999996 445667899999987655433  348999999998655

>KOG1011|consensus

Probab=99.38  E-value=8.6e-13  Score=135.04  Aligned_cols=122  Identities=23%  Similarity=0.350  Sum_probs=104.4

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC--
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF--  120 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~--  120 (349)
                      ..+...++++|+.|.+|-++|..|++||||.+.++..+.+|+++... +||+|||.|.|...+....+++.|||+|.-  
T Consensus       291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~-lnpvw~ekfhfechnstdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQE-LNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             cccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhc-cchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence            67889999999999999999999999999999999999999999874 599999999999988889999999999852  


Q ss_pred             ---------CCCceeEEEEEeCCccccCCcceeeEEEccCC-CCCCcceEEEEEEEEE
Q psy3181         121 ---------TMDELIAWAKIPIPSSVMKGETHEDWFPLSGK-QGEDKEGMINLVLSYT  168 (349)
Q Consensus       121 ---------skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k-~g~~~~GeI~L~L~~~  168 (349)
                               ..|||+|+..|.+.. + .|+ .+-||.|..+ +.....|.|+|.+...
T Consensus       370 sklrqkl~resddflgqtvievrt-l-sge-mdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEVRT-L-SGE-MDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEEEe-c-ccc-hhhhcchhhccchhhccceEEEEEEEE
Confidence                     348999999998873 3 344 6789999753 2345679988887764

>cd00030 C2 C2 domain

Probab=99.38  E-value=5.3e-12  Score=97.69  Aligned_cols=100  Identities=26%  Similarity=0.498  Sum_probs=84.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCcee
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd~L  126 (349)
                      |.|+|++|+++......+..+|||.+.+.. ...+|++..++ .||.||+.|.|.+.. ....+.|+|||.+..+.++++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            578999999998877778899999999987 88899888764 599999999999987 568899999999988888999


Q ss_pred             EEEEEeCCccccCCcceeeEEEc
Q psy3181         127 AWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       127 G~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      |.+.+++.++.........|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999644245556778765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG2059|consensus

Probab=99.37  E-value=1.3e-12  Score=135.13  Aligned_cols=123  Identities=20%  Similarity=0.322  Sum_probs=106.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL  125 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~  125 (349)
                      ..|.|+|.+|+||++.+..|..||||.|.++. ...+|.++.+ ++.|-|.|.|.|+++..-..|.|-|||.| +++|+.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~   82 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI   82 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence            46899999999999999999999999999986 5789999988 56999999999999988899999999999 999999


Q ss_pred             eEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEEEccc
Q psy3181         126 IAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~p~~~  172 (349)
                      ||.+.|.=++ +...+..+.|+.|..-+ .....|+|+|++.+++...
T Consensus        83 IGKvai~re~-l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   83 IGKVAIKRED-LHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             cceeeeeHHH-HhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            9999999875 44344678999998643 3467899999999976543

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.31  E-value=2.1e-11  Score=95.18  Aligned_cols=88  Identities=23%  Similarity=0.393  Sum_probs=77.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC---VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD  123 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~---~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd  123 (349)
                      .|.|+|++|++|......+..+|||++++...   ..+|+++.++. +|.|||+|.|.+... ...|.|+|||.+..+.+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~   79 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVPPPELAELEIEVYDKDRFGRD   79 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCC-CCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence            37899999999988877678999999999864   78999887754 999999999999776 78999999999988778


Q ss_pred             ceeEEEEEeCCcc
Q psy3181         124 ELIAWAKIPIPSS  136 (349)
Q Consensus       124 d~LG~v~I~L~e~  136 (349)
                      .++|.+.+++.+.
T Consensus        80 ~~~G~~~~~l~~~   92 (101)
T smart00239       80 DFIGQVTIPLSDL   92 (101)
T ss_pred             ceeEEEEEEHHHc
Confidence            9999999998854

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1028|consensus

Probab=99.24  E-value=2.2e-11  Score=123.07  Aligned_cols=108  Identities=22%  Similarity=0.336  Sum_probs=88.3

Q ss_pred             cccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181          38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS  109 (349)
Q Consensus        38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~  109 (349)
                      .|+++.+..|.|+|.|++|++|+.++..+.+||||++.+-  .   .+.+|.+.++ +.||+|||+|.|.++..   ...
T Consensus       289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~  367 (421)
T KOG1028|consen  289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVS  367 (421)
T ss_pred             EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeE
Confidence            3488899999999999999999999999999999999874  1   3556776655 56999999999998754   467


Q ss_pred             EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                      |.|+|||+|.++++++||.+.+....   .+....+|...
T Consensus       368 l~l~V~d~d~~~~~~~iG~~~lG~~~---~~~~~~hW~~m  404 (421)
T KOG1028|consen  368 LELTVWDHDTLGSNDLIGRCILGSDS---TGEEVRHWQEM  404 (421)
T ss_pred             EEEEEEEcccccccceeeEEEecCCC---CchHHHHHHHH
Confidence            99999999999999999998888773   23334456544

>PLN02223 phosphoinositide phospholipase C

Probab=99.22  E-value=2.3e-10  Score=117.52  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEE
Q psy3181          46 VGRLNITVVQAKLVKN-----YGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEI  114 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~-----~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V  114 (349)
                      ...|.|+|+.|.+++.     .+.....||||+|.+.+     ...+|++ .+++.||+|||+|.|.+..+ -..|+|+|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PELAlLrf~V  486 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDLALISFEV  486 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCceEEEEEE
Confidence            4679999999998741     13346689999999853     3566764 56678999999999998655 46799999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEE
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSY  167 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~  167 (349)
                      ||+|..+.++|+|+.++|+. .+..|.   ++++|..+.|.. ..-.|.+.+.|
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~-~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVS-ELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EecCCCCCCcEEEEEecchH-HhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            99998888999999999999 677787   678887665543 22345554443

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.20  E-value=8.3e-11  Score=101.19  Aligned_cols=90  Identities=14%  Similarity=0.164  Sum_probs=73.7

Q ss_pred             EEEEEEEeecCCCC--CCCCC--CCcEEEEEECC---eEEEEEecCCCCCC--CccceEEEEEecc--------------
Q psy3181          49 LNITVVQAKLVKNY--GLVTK--MDPYVRLRVGH---CVYETHTDPSGGKF--PRWNKEVFCLLPQ--------------  105 (349)
Q Consensus        49 L~V~Iv~ArnL~~~--d~~G~--sDPYV~V~lg~---~~~kTkvvk~~~~n--P~WnEtF~F~V~~--------------  105 (349)
                      |+|.|.+|++++..  +..|.  +||||++.+.+   .+++|.++++ ++|  |.||+.|.|.+..              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            78999999996544  33564  99999999864   5788999887 457  9999999988654              


Q ss_pred             -------C---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCC
Q psy3181         106 -------G---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG  140 (349)
Q Consensus       106 -------~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g  140 (349)
                             .   ...|.++|||.|.+++|++||.+.++|. .+..+
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~-~l~~~  124 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS-ILPRP  124 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh-hcccc
Confidence                   1   3779999999999999999999999999 44444

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.19  E-value=9.7e-11  Score=126.91  Aligned_cols=136  Identities=16%  Similarity=0.320  Sum_probs=109.5

Q ss_pred             HHhhhhcccCccccccCCCCcceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEE
Q psy3181          25 LALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYG--LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFC  101 (349)
Q Consensus        25 ~~~~~~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d--~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F  101 (349)
                      +++.+.++|.       ...+.|+|.|+|.+|++|+..+  ..+..|||+.+.+.+. .-+|++.++ +.||+|||+|.+
T Consensus       421 idi~~~m~~~-------s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi  492 (1227)
T COG5038         421 IDISQIMAGD-------SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYI  492 (1227)
T ss_pred             EcHHHhhccc-------cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEE
Confidence            4455577763       2788999999999999999988  5799999999997543 448998877 559999999999


Q ss_pred             EeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181         102 LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVS  170 (349)
Q Consensus       102 ~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~  170 (349)
                      .+..-...|.++|||.+.+.+|+.+|.+.++|..+...+...++-+.+...  .+..|+|...+.|.|.
T Consensus       493 ~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~--~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         493 LLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN--TKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             EecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc--CccceEEEEeeeeecc
Confidence            998888999999999998999999999999999555554444456665422  3467999999998764

>PLN02952 phosphoinositide phospholipase C

Probab=99.14  E-value=1e-09  Score=114.67  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEE
Q psy3181          46 VGRLNITVVQAKLVKNY------GLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLE  113 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~------d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~  113 (349)
                      ...|.|+|+.|.+++..      +.....||||+|.+.     ..+.+|+++.++ .||+|||+|.|.+..+ -..|+|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence            57899999999887421      223446999999874     356789998876 6999999999997654 3678999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG  154 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g  154 (349)
                      |||+|..+.++|+|++++|+. .+..|.   .|++|..+.|
T Consensus       548 V~D~D~~~~ddfiGq~~lPv~-~Lr~Gy---R~VpL~~~~G  584 (599)
T PLN02952        548 VREYDMSEKDDFGGQTCLPVS-ELRPGI---RSVPLHDKKG  584 (599)
T ss_pred             EEecCCCCCCCeEEEEEcchh-HhcCCc---eeEeCcCCCC
Confidence            999999888999999999999 677787   6999976655

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.13  E-value=1.5e-10  Score=125.50  Aligned_cols=124  Identities=21%  Similarity=0.260  Sum_probs=98.2

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSF  120 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~  120 (349)
                      -...|-|.|.+.+|.||+..|.+|.+||||++.+.++ .++|+++++ ++||+|||.|.+++... ...+.+.|+|||..
T Consensus      1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038        1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred             ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEEEEEeecccC
Confidence            3457899999999999999999999999999999876 789999887 45999999999999754 68899999999999


Q ss_pred             CCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         121 TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      .+++.||.+.++|+. +..+.....-.+|.++......|.++....|.
T Consensus      1115 ~knd~lg~~~idL~~-l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038        1115 EKNDLLGTAEIDLSK-LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred             CCccccccccccHhh-cCcCCccceeeeccCcceEecccEeecceecc
Confidence            999999999999994 54443344445666543123345555544443

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.08  E-value=1.6e-09  Score=112.98  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=89.0

Q ss_pred             cceEEEEEEEEeecCCC------CCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEE
Q psy3181          45 PVGRLNITVVQAKLVKN------YGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYL  112 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~------~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I  112 (349)
                      ...+|.|+|+.|.+++.      .+.....||||+|.+.+     ...+|++..+ +.||.|||+|.|.+.-+ -..|+|
T Consensus       467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf  545 (598)
T PLN02230        467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRV  545 (598)
T ss_pred             cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEE
Confidence            45789999999998641      12334579999998742     3568886555 67999999999997644 488999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEE
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSY  167 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~  167 (349)
                      +|||+|..++|+|+|+.++|+. .+..|.   +.++|..+.|.. ..-.|.+.++|
T Consensus       546 ~V~d~d~~~~ddfiGQ~~lPv~-~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        546 EVHEHDINEKDDFGGQTCLPVS-EIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEECCCCCCCCEEEEEEcchH-HhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            9999998888999999999999 677787   567887665543 22355555544

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.06  E-value=3.6e-09  Score=110.19  Aligned_cols=118  Identities=17%  Similarity=0.231  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeecCC----C--CCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEE
Q psy3181          45 PVGRLNITVVQAKLVK----N--YGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYL  112 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~----~--~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I  112 (349)
                      ...+|.|+|+.|.+++    .  .+.....||||+|.+.     ..+.+|+++.++. ||.|||+|.|.+..+ -..|+|
T Consensus       450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~-nP~W~e~f~F~i~~PeLAllRf  528 (581)
T PLN02222        450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNW-IPAWDEVFEFPLTVPELALLRL  528 (581)
T ss_pred             ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCC-CcccCCeeEEEEEcCceeEEEE
Confidence            3568999999998742    2  2223567999999984     3467899998864 999999999987654 478999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc-ceEEEEEEEE
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK-EGMINLVLSY  167 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~-~GeI~L~L~~  167 (349)
                      +|||+|..+.++|+|+.++|+. .+..|.   +.++|..+.|... .-.|.+.+.|
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~-~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVW-ELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchh-hhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence            9999998888999999999999 688887   5678876655432 2345555443

>KOG1328|consensus

Probab=99.05  E-value=7.2e-11  Score=122.45  Aligned_cols=156  Identities=18%  Similarity=0.274  Sum_probs=112.1

Q ss_pred             cchhhhHHHHHHHHhhhhcccC--cccc---cc-CCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---------
Q psy3181          13 SNHQTDLDQQTALALQNELAGA--YSTA---SS-LIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---------   77 (349)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---s~-~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---------   77 (349)
                      ++.+|+.+.-..-.+++.+-|-  .-++   .. ....+.--|.|.+..|+||-++|.+|.+|||+...+-         
T Consensus        74 ~~d~e~~~e~l~sy~~~~fg~~~~eh~~~~e~v~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~p  153 (1103)
T KOG1328|consen   74 QGDVEESQESLYKYVRNAFGGDAAEHNALMEKVKQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSP  153 (1103)
T ss_pred             CCcchhhhhHHHHHHHHHhCCCHhHhhhccccccCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccCh
Confidence            4556666665565666655441  0000   01 2233444567888999999999999999999997441         


Q ss_pred             -----------------C----e-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCC---------------
Q psy3181          78 -----------------H----C-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECS---------------  119 (349)
Q Consensus        78 -----------------~----~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~---------------  119 (349)
                                       +    + ..-|.+ +++++||.|+|.|.|.+.+- ...+++.+||+|.               
T Consensus       154 ra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~  232 (1103)
T KOG1328|consen  154 RALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVT  232 (1103)
T ss_pred             hhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhh
Confidence                             0    0 122444 55678999999999999876 5889999999884               


Q ss_pred             ------------------CCC---CceeEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEEEcc
Q psy3181         120 ------------------FTM---DELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYTVSF  171 (349)
Q Consensus       120 ------------------~sk---dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~p~~  171 (349)
                                        .+.   |||+|.+.|||.++...|  .++||.|+++. ..+..|.++|.+|+...+
T Consensus       233 G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e  304 (1103)
T KOG1328|consen  233 GFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE  304 (1103)
T ss_pred             cchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcch--HHHHhccCcccccccccceEEEEEEEeeec
Confidence                              122   899999999999877776  68999999764 367899999999986443

>PLN02228 Phosphoinositide phospholipase C

Probab=99.05  E-value=3.3e-09  Score=110.20  Aligned_cols=120  Identities=16%  Similarity=0.270  Sum_probs=93.1

Q ss_pred             ceEEEEEEEEeecCCC---C---CCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCcc-ceEEEEEeccC-CeEEEE
Q psy3181          46 VGRLNITVVQAKLVKN---Y---GLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRW-NKEVFCLLPQG-VTSIYL  112 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~---~---d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~W-nEtF~F~V~~~-~~~L~I  112 (349)
                      ...|.|+|++|.+|+.   .   +.....||||+|.+.     ...++|+++.++ .||.| ||+|.|.+..+ -..|+|
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf  508 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWF  508 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEE
Confidence            4579999999998731   1   223458999999874     246799998765 59999 99999997654 478999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc-ceEEEEEEEEEEc
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK-EGMINLVLSYTVS  170 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~-~GeI~L~L~~~p~  170 (349)
                      +|+|+|..+.++|+|+.++|++ .+..|.   +.++|..+.|... ...|.+.+.+.+.
T Consensus       509 ~V~D~d~~~~d~figq~~lPv~-~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        509 KVQDYDNDTQNDFAGQTCLPLP-ELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EEEeCCCCCCCCEEEEEEcchh-HhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence            9999998888999999999999 678887   5678877666443 4568887777654

>KOG0169|consensus

Probab=99.04  E-value=1.5e-09  Score=113.85  Aligned_cols=117  Identities=20%  Similarity=0.305  Sum_probs=91.1

Q ss_pred             EEEEEEEEeecCC-CCCC---CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeec
Q psy3181          48 RLNITVVQAKLVK-NYGL---VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDE  117 (349)
Q Consensus        48 ~L~V~Iv~ArnL~-~~d~---~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~  117 (349)
                      +|.|+|++|.+++ +.+.   ...+||||.|++.+     ...+|+++++++-||.|+|+|.|.+..+ -.-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999753 3322   25689999999853     4689998888888999999999998765 47789999999


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCC-CcceEEEEEEEEE
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE-DKEGMINLVLSYT  168 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~-~~~GeI~L~L~~~  168 (349)
                      |..++|||+|+.++|++ .+..|.   +-++|.++.|. -....|.+.+.+.
T Consensus       697 d~~~~ddF~GQ~tlP~~-~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVS-ELRQGY---RHVPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHH-HhhCce---eeeeecCCCCccccceeEEEEEEEe
Confidence            99999999999999999 577776   44577665442 2234566655554

>PLN02352 phospholipase D epsilon

Probab=98.96  E-value=6.7e-09  Score=110.48  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             CCcceEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCC-eEEEEEEe
Q psy3181          43 QNPVGRLNITVVQAKLVKNY----GLV-TKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGV-TSIYLEIY  115 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~----d~~-G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~-~~L~I~V~  115 (349)
                      ...+|+|.++|.+|+-+...    +.. ...||||.|.+++. ..+|   .+ ..||.|+|.|.+.+.... ..+.|+|.
T Consensus         6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk   81 (758)
T PLN02352          6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITLK   81 (758)
T ss_pred             cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecCCcEEEEEe
Confidence            46789999999999844322    111 12399999999864 4566   33 349999999999998776 78999998


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcce-EEEEEEEEEEccceeeeeeecCc-----eeeeeec
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG-MINLVLSYTVSFFFFLLLLENSI-----SYLEITK  189 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~G-eI~L~L~~~p~~~~~~~~~~~~~-----~y~~~t~  189 (349)
                      |     ..++||.+.+|+.+++..+...+.|+++.+.++....| .|+++++|+|....  ..|..++     ..+|.+.
T Consensus        82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~gvp~~~  154 (758)
T PLN02352         82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE--PTWCKILENGSFQGLRNAT  154 (758)
T ss_pred             c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC--cchhhcccCCCcCCcCCcc
Confidence            8     25799999999997555434489999998766544445 99999999998763  2243332     2355555


Q ss_pred             cccc
Q psy3181         190 HPLY  193 (349)
Q Consensus       190 ~~~~  193 (349)
                      .|..
T Consensus       155 f~~r  158 (758)
T PLN02352        155 FPQR  158 (758)
T ss_pred             cccC
Confidence            5554

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.91  E-value=4.8e-09  Score=86.50  Aligned_cols=82  Identities=17%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181          49 LNITVVQAKLVKNYG---LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d---~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd  124 (349)
                      |.|+|..++|+...+   ..+.+||||.|++++. +.+|++.    .||.|||+|.|.+ +....+.++|||+.. ...-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~V-dk~nEiel~VyDk~~-~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPV-EKNNEEEVIVYDKGG-DQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEe-cCCcEEEEEEEeCCC-Ceec
Confidence            679999999998887   5688999999999976 8888874    4999999999999 457999999999863 2345


Q ss_pred             eeEEEEEeCCcc
Q psy3181         125 LIAWAKIPIPSS  136 (349)
Q Consensus       125 ~LG~v~I~L~e~  136 (349)
                      .+|..-+.++++
T Consensus        75 Pi~llW~~~sdi   86 (109)
T cd08689          75 PVGLLWLRLSDI   86 (109)
T ss_pred             ceeeehhhHHHH
Confidence            678777777754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264|consensus

Probab=98.88  E-value=1.2e-08  Score=107.28  Aligned_cols=122  Identities=16%  Similarity=0.254  Sum_probs=96.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccc-eEEEEEeccC-CeEEEEEEeecC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWN-KEVFCLLPQG-VTSIYLEIYDEC  118 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~Wn-EtF~F~V~~~-~~~L~I~V~D~d  118 (349)
                      .-+|.|+|+.|+.|+..+. |.+.|||.|.+-     +.+++|+++..++.||+|| |+|+|.+.++ -..|++.|+|+|
T Consensus      1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            4678999999999996654 667899999863     4577888877788999999 9999999876 588999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEEEEccc
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~~p~~~  172 (349)
                      .++...|||++++|+. .+..|.   +.++|...-. +-.-..|.+.+...|..+
T Consensus      1143 mfs~~~FiaqA~yPv~-~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVK-AIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred             ccCCcceeeeeecchh-hhhccc---eeeecccCchhhhhhhhheeeeEeccccC
Confidence            9998889999999999 677665   4567753211 112356777777776554

>KOG1031|consensus

Probab=98.85  E-value=8.2e-09  Score=105.36  Aligned_cols=120  Identities=18%  Similarity=0.355  Sum_probs=100.3

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEEEEEecCCCCCCCccc-eEEEEEeccC---CeEEEEEEeecCCC
Q psy3181          46 VGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVGHCVYETHTDPSGGKFPRWN-KEVFCLLPQG---VTSIYLEIYDECSF  120 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg~~~~kTkvvk~~~~nP~Wn-EtF~F~V~~~---~~~L~I~V~D~d~~  120 (349)
                      .|+|-|+|+.|++|+-+|.. ...|.||.|++++..++|.+..+ .+||.|| +-|.|+|.+.   ++.|.|.+.|+|..
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            47899999999999999874 45799999999999999999776 5699999 4599999765   58899999999999


Q ss_pred             CCCceeEEEEEeCCcccc---------CCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         121 TMDELIAWAKIPIPSSVM---------KGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~---------~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      +.+|.||.+.|+++.+..         .|.+...|+++... ..-.+|+|.+-+..
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgirgeinvivkv  135 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccccceeEEEEEE
Confidence            999999999999986532         45667789999753 23367999987763

>KOG1328|consensus

Probab=98.68  E-value=8.4e-09  Score=107.40  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceEEEEEeccC-----C
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKEVFCLLPQG-----V  107 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~  107 (349)
                      ..+.....+|.|.|+-|+++-+-|.+|.+||||+|+++.       ..++|+++++ ++||+|+|+|.|.|+.+     .
T Consensus       940 ~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~ 1018 (1103)
T KOG1328|consen  940 AYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTET 1018 (1103)
T ss_pred             EEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCcccccccc
Confidence            445677778899999999999999999999999999874       3678999887 56999999999999765     3


Q ss_pred             eEEEEEEeecCCCCCCceeEEEEEeCCcc
Q psy3181         108 TSIYLEIYDECSFTMDELIAWAKIPIPSS  136 (349)
Q Consensus       108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~  136 (349)
                      .-+.|+|+|+|-++.+||-|++.+.|.++
T Consensus      1019 Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1019 AMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             ceEEEEeeccceecccccchHHHHhhCCC
Confidence            66899999999999999999999999854

>KOG2059|consensus

Probab=98.62  E-value=3.2e-08  Score=103.05  Aligned_cols=116  Identities=14%  Similarity=0.273  Sum_probs=84.0

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCeE----EEEEecCCCCCCCccceEEEEEeccC----------------CeEE
Q psy3181          51 ITVVQAKLVKNYGLVTKMDPYVRLRVGHCV----YETHTDPSGGKFPRWNKEVFCLLPQG----------------VTSI  110 (349)
Q Consensus        51 V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~----~kTkvvk~~~~nP~WnEtF~F~V~~~----------------~~~L  110 (349)
                      +.+..++.+-+.+. |.+||||++...+..    .+|++.++++ +|.|+|.|.|.+..+                ...+
T Consensus       135 c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kkt~-~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i  212 (800)
T KOG2059|consen  135 CHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKKTT-NPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI  212 (800)
T ss_pred             hhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeeecc-CcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence            33344445444443 569999999876543    5888887754 999999999987533                2568


Q ss_pred             EEEEee-cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCC-C-----CCcceEEEEEEEEEE
Q psy3181         111 YLEIYD-ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-G-----EDKEGMINLVLSYTV  169 (349)
Q Consensus       111 ~I~V~D-~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g-----~~~~GeI~L~L~~~p  169 (349)
                      ++++|+ ++....++|+|++.+++.... .......||.|.+++ |     ...-|.+++.+.|+-
T Consensus       213 rv~lW~~~~~~~~~~FlGevrv~v~~~~-~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  213 RVDLWNDLNLVINDVFLGEVRVPVDVLR-QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             EEeeccchhhhhhhhhceeEEeehhhhh-hccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence            899999 666667999999999999543 334467899997642 1     234589999999974

>KOG1326|consensus

Probab=98.55  E-value=2.1e-08  Score=107.41  Aligned_cols=169  Identities=14%  Similarity=0.113  Sum_probs=120.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEE---ec-------cCCeEEEEEE
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL---LP-------QGVTSIYLEI  114 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~---V~-------~~~~~L~I~V  114 (349)
                      .+..+++.|.+|+.|...|..+.+|||+.+.+.++...|-++.+ ++||.|+++..|.   +.       ..-..+.++|
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~  282 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV  282 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence            34457778889999999999999999999999999999999887 6699999999986   21       1236688999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccceeeeeeecCceeeeeeccccch
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYA  194 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~y~~~t~~~~~~  194 (349)
                      ||.++.+.++|+|+...... +... ...-.|+++..  +....|++.++...          ++.+.   +        
T Consensus       283 yd~dr~g~~ef~gr~~~~p~-V~~~-~p~lkw~p~~r--g~~l~gd~l~a~el----------iq~~~---~--------  337 (1105)
T KOG1326|consen  283 YDLDRSGINEFKGRKKQRPY-VMVQ-CPALKWVPTMR--GAFLDGDVLIAAEL----------IQIGK---P--------  337 (1105)
T ss_pred             ehhhhhchHHhhcccccceE-EEec-CCccceEEeec--ccccccchhHHHHH----------HhhcC---C--------
Confidence            99999999999999877766 4443 33568999863  23456776652211          11110   0        


Q ss_pred             hhhccCCCCCccccCCCCCCCcCCCCCcchHHHHHHHHHHHhhcccccccCCCCCCCcceEEEEeeeeeeccccCcCcee
Q psy3181         195 AKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQ  274 (349)
Q Consensus       195 ~k~~ig~lPd~flrv~~~~~~~~~~~~~~~~d~q~~~~l~~~~~~~~~~~~~~~~~~~g~lsiti~~~~~~~~~~~~~~~  274 (349)
                          + +-|++                             ++...++++    |.+.+|.++++.+++..||.|++..++
T Consensus       338 ----i-~~p~~-----------------------------~~~~~~~~v----p~~iRp~~q~~~~evl~wgLrn~k~~~  379 (1105)
T KOG1326|consen  338 ----I-PQPPP-----------------------------QREIIFSLV----PKKIRPKTQIGKAELLMWGLRNPKKSG  379 (1105)
T ss_pred             ----C-CCCCc-----------------------------ccccceecc----ccCCCcceeeeeeehhhhhhccccccc
Confidence                0 00111                             222233333    568999999999999999999998554


Q ss_pred             EEe
Q psy3181         275 IVS  277 (349)
Q Consensus       275 ~~~  277 (349)
                      +.+
T Consensus       380 m~~  382 (1105)
T KOG1326|consen  380 MAS  382 (1105)
T ss_pred             ccc
Confidence            433

>KOG1013|consensus

Probab=98.14  E-value=2.6e-06  Score=82.52  Aligned_cols=107  Identities=19%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             cccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181          38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS  109 (349)
Q Consensus        38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~  109 (349)
                      .|+.+......|.|+++++..|..+|.+|-+||||+..+..     -+.+|.+.++ +.+|+||+.|.|.+.+.   ...
T Consensus       224 isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~k  302 (362)
T KOG1013|consen  224 ISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKK  302 (362)
T ss_pred             eeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcce
Confidence            56788889999999999999999999999999999998751     2567777665 56999999999998776   478


Q ss_pred             EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEE
Q psy3181         110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFP  148 (349)
Q Consensus       110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~  148 (349)
                      +.|.|||.+..+..+++|.+...+-   ..++....|+.
T Consensus       303 v~lsvgd~~~G~s~d~~GG~~~g~~---rr~~v~~h~gr  338 (362)
T KOG1013|consen  303 VALSVGDYDIGKSNDSIGGSMLGGY---RRGEVHKHWGR  338 (362)
T ss_pred             EEEeecccCCCcCccCCCccccccc---ccchhhcCccc
Confidence            9999999998878899997655433   34555556654

>KOG1013|consensus

Probab=98.02  E-value=1.3e-06  Score=84.65  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=111.2

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEe--ccC--CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLL--PQG--VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V--~~~--~~~L  110 (349)
                      +.+......+.++|.+|++|+.++.+|..|||++..++.     .+.+|++..+ +.||.|+|+.....  .+.  ...+
T Consensus        86 ~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~  164 (362)
T KOG1013|consen   86 LLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVL  164 (362)
T ss_pred             hhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhh
Confidence            677788889999999999999999999999999998862     3577888766 66999999876652  222  4678


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCcccc-CCcceeeEEEccCC------CCCCcceEEEEEEEEEEccceeeeeeecCce
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGK------QGEDKEGMINLVLSYTVSFFFFLLLLENSIS  183 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~-~g~~~~~W~~L~~k------~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~  183 (349)
                      ++.|.|++.+..++++|+..+++..+-. .......|+.-...      ......|.|.+++.|......+...|-..  
T Consensus       165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc--  242 (362)
T KOG1013|consen  165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRC--  242 (362)
T ss_pred             heeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEe--
Confidence            8999999999999999999988884321 22223334332111      11246799999998854333222222111  


Q ss_pred             eeeeeccccchhhhccCCCCCccccCCCCCCCcC
Q psy3181         184 YLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNH  217 (349)
Q Consensus       184 y~~~t~~~~~~~k~~ig~lPd~flrv~~~~~~~~  217 (349)
                           .+   ...+...+..|+|+.+..+|+..-
T Consensus       243 -----~~---l~ssDsng~sDpyvS~~l~pdv~~  268 (362)
T KOG1013|consen  243 -----SH---LASSDSNGYSDPYVSQRLSPDVGK  268 (362)
T ss_pred             -----ee---eeccccCCCCCccceeecCCCcch
Confidence                 11   111223345677777776654433

>KOG0905|consensus

Probab=98.02  E-value=4.8e-06  Score=91.01  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=83.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEEEEEe
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIYLEIY  115 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~I~V~  115 (349)
                      ..|+|.|-|.-|++|+-.......||||+.++.     ..+.||++++++ .||.|||..... .+.+   .+.|.++||
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccccc-CCCchhhheeecCCchhhhhhheeeeeee
Confidence            467899999999999766666779999999985     246789998875 599999998877 3332   488999999


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      ..+.+..+.++|.+.++|.+. ........||.|..
T Consensus      1601 s~~~~~en~~lg~v~i~L~~~-~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKV-DLLKESVGWYNLGA 1635 (1639)
T ss_pred             cccceeeeeeeeeeecchhhc-chhhhhcceeeccc
Confidence            999999999999999999954 33332458999963

>KOG1326|consensus

Probab=97.97  E-value=5.1e-06  Score=89.62  Aligned_cols=93  Identities=22%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE--EEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCC
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVY--ETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSF  120 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~--kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~  120 (349)
                      +.....+|.+++|.+|.+.|.+|.+|||+++.+|+...  ++..+.+ +.||+|++.|.+....+ ...+.+.|||+|.+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~  688 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE  688 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence            34455679999999999999999999999999998764  4445555 56999999999886544 67899999999999


Q ss_pred             CCCceeEEEEEeCCccc
Q psy3181         121 TMDELIAWAKIPIPSSV  137 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l  137 (349)
                      +.|+.+|+..++|+..+
T Consensus       689 ~~d~~iget~iDLEnR~  705 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLENRW  705 (1105)
T ss_pred             cccchhhceehhhhhcc
Confidence            99999999999998543

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=97.76  E-value=2.7e-05  Score=65.91  Aligned_cols=63  Identities=32%  Similarity=0.527  Sum_probs=55.1

Q ss_pred             ceEEEEeeeeeeccccCc----CceeEEecee-ec---------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         253 GRLNITVVQILSIGRYLV----PTYQIVSGAY-YR---------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      |.|.|||++|+..+++++    |||.|.+|.. ++         ||. |||..+..+   ...++++|+|+-.|+.|+.|
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~-WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPR-WNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCc-cCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            899999999999999875    9999999876 55         888 999988776   45789999999999999887


Q ss_pred             c
Q psy3181         316 P  316 (349)
Q Consensus       316 ~  316 (349)
                      -
T Consensus        81 G   81 (121)
T cd04016          81 A   81 (121)
T ss_pred             E
Confidence            3

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>PLN02964 phosphatidylserine decarboxylase

Probab=97.51  E-value=0.00017  Score=76.69  Aligned_cols=88  Identities=18%  Similarity=0.317  Sum_probs=72.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEE-EECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeec
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRL-RVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDE  117 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V-~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~  117 (349)
                      +....-.|...+++++|+    ++.   .|||..+ .+|.+.++|.+.++ +.||+||+...|.+.+. ....++.|||+
T Consensus        47 ~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  118 (644)
T PLN02964         47 VSAEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFET  118 (644)
T ss_pred             eecccccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEec
Confidence            455667788999999987    333   5887665 78899999999876 56999999999998654 45579999999


Q ss_pred             CCCCCCceeEEEEEeCCc
Q psy3181         118 CSFTMDELIAWAKIPIPS  135 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e  135 (349)
                      +++++++++|.++++|.+
T Consensus       119 ~~~s~n~lv~~~e~~~t~  136 (644)
T PLN02964        119 NRLSKNTLVGYCELDLFD  136 (644)
T ss_pred             CCCCHHHhhhheeecHhh
Confidence            999999999999998874

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.46  E-value=0.00029  Score=60.41  Aligned_cols=100  Identities=21%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             EEEEEEEeecCCCCC---------C----CCCCCcEEEEEEC----CeEEEEEecCCCCCCCccceEEEEEec-------
Q psy3181          49 LNITVVQAKLVKNYG---------L----VTKMDPYVRLRVG----HCVYETHTDPSGGKFPRWNKEVFCLLP-------  104 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d---------~----~G~sDPYV~V~lg----~~~~kTkvvk~~~~nP~WnEtF~F~V~-------  104 (349)
                      |.|.|++|.+|+...         +    .-..++||++.+.    ++..+|+++.+ +-.|+|+-.+.|..+       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence            467888888885321         1    1125789999853    56788999887 459999999999854       


Q ss_pred             -c--------CCeEEEEEEeecCCC----------CCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181         105 -Q--------GVTSIYLEIYDECSF----------TMDELIAWAKIPIPSSVMKGETHEDWFPL  149 (349)
Q Consensus       105 -~--------~~~~L~I~V~D~d~~----------skdd~LG~v~I~L~e~l~~g~~~~~W~~L  149 (349)
                       .        +...+.++||....-          .+|-.||.+.||+.+++........||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence             1        136789999986542          23558999999999888877667899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011|consensus

Probab=97.42  E-value=0.00045  Score=72.21  Aligned_cols=107  Identities=20%  Similarity=0.306  Sum_probs=81.5

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceEEEEEeccC----CeEEE
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIY  111 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~  111 (349)
                      +.-..+++|+|+.|.+|+.... |..-|||.|.+-+       +++.|++..+ +-.|.+||+|.|-+..+    .-.|.
T Consensus      1121 gtgehkvtvkvvaandlkwqts-gmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1121 GTGEHKVTVKVVAANDLKWQTS-GMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred             CCCcceEEEEEEecccccchhc-cccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEE
Confidence            3344568888999999976543 6778999998632       4566777554 44899999999987543    47799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +.|.|+.-...|..+|.+.++|.++...|. ...|++|..+
T Consensus      1199 ~~VKDYCFAReDRvvGl~VlqL~~va~kGS-~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLRSVADKGS-CACWVPLGRR 1238 (1283)
T ss_pred             EeehhheeecccceeeeeeeehhhHhhcCc-eeEeeecccc
Confidence            999998855667799999999997666665 7789999643

>KOG2060|consensus

Probab=97.28  E-value=0.00017  Score=71.09  Aligned_cols=109  Identities=13%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             CCcceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEe-
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIY-  115 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~-  115 (349)
                      -..+|.|.|.|++|++|-.+-. -..++|||+|++..     .+.+|+...+++ .|.+.+...|.-.+....|.++|| 
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~-~plyqq~l~f~~sp~~k~Lq~tv~g  343 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTL-DPLYQQQLSFDQSPPGKYLQGTVWG  343 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccC-chhhhhhhhhccCCCccEEEEEEec
Confidence            4567899999999999954432 34789999998742     256788877744 777777788888788899999999 


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |..++-++.|+|.+.+-++++-......-.||+|.+.
T Consensus       344 dygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             cccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            5667777889999999999654444356789999764

>KOG1265|consensus

Probab=96.79  E-value=0.0032  Score=68.01  Aligned_cols=99  Identities=16%  Similarity=0.258  Sum_probs=77.7

Q ss_pred             CCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceE-EEEE--eccCCeEEE
Q psy3181          42 IQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKE-VFCL--LPQGVTSIY  111 (349)
Q Consensus        42 ~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEt-F~F~--V~~~~~~L~  111 (349)
                      ...-.+++.|+|++|.-|.+++.    ..||.|.+.+       ..++|+++..++.||+|+|. |.|.  +-+.-..|+
T Consensus       698 dgvIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR  773 (1189)
T KOG1265|consen  698 DGVIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR  773 (1189)
T ss_pred             cceEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence            34455779999999999987765    3899998742       46789999988999999975 7786  334458899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |.||+++    ..+||+=.+|++ .+..|.   +.+.|...
T Consensus       774 iavyeEg----gK~ig~RIlpvd-~l~~GY---rhv~LRse  806 (1189)
T KOG1265|consen  774 IAVYEEG----GKFIGQRILPVD-GLNAGY---RHVCLRSE  806 (1189)
T ss_pred             eeeeccC----Cceeeeeccchh-cccCcc---eeEEecCC
Confidence            9999987    579999999999 677787   45566543

>KOG1327|consensus

Probab=96.61  E-value=0.004  Score=64.45  Aligned_cols=81  Identities=23%  Similarity=0.324  Sum_probs=63.7

Q ss_pred             EEeecCCCCCCCCCCCcEEEEEE--C----CeEEEEEecCCCCCCCccceEEEEEe-----ccCCeEEEEEEeecCCCCC
Q psy3181          54 VQAKLVKNYGLVTKMDPYVRLRV--G----HCVYETHTDPSGGKFPRWNKEVFCLL-----PQGVTSIYLEIYDECSFTM  122 (349)
Q Consensus        54 v~ArnL~~~d~~G~sDPYV~V~l--g----~~~~kTkvvk~~~~nP~WnEtF~F~V-----~~~~~~L~I~V~D~d~~sk  122 (349)
                      ++|++|..+|.++++|||..+.-  +    ...++|.++++ +++|.|.+ |.+..     .+....+.+.+||++..++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            45788899999999999999853  2    23578888876 56999954 44442     2346889999999999999


Q ss_pred             CceeEEEEEeCCcc
Q psy3181         123 DELIAWAKIPIPSS  136 (349)
Q Consensus       123 dd~LG~v~I~L~e~  136 (349)
                      ++++|.+..++.+.
T Consensus       221 ~~~ig~~~tt~~~~  234 (529)
T KOG1327|consen  221 HDLIGKFQTTLSEL  234 (529)
T ss_pred             cCceeEecccHHHh
Confidence            99999999998854

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.55  E-value=0.031  Score=55.41  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc--------CCeEEEEEEeecC-C
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ--------GVTSIYLEIYDEC-S  119 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~--------~~~~L~I~V~D~d-~  119 (349)
                      +.|.|++|+|++....   -.-.+..++++....|-.+.. +..|.||..+.+++..        ....|++++|-.| .
T Consensus         2 ivl~i~egr~F~~~~~---~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR---HPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCCCC---ccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            5789999999977622   345667789999999987766 4499999999998642        2588999999988 5


Q ss_pred             CCCCceeEEEEEeCCcc-c-cCC--cceeeEEEccCC--CCCCcceEEEEEEEEEEc
Q psy3181         120 FTMDELIAWAKIPIPSS-V-MKG--ETHEDWFPLSGK--QGEDKEGMINLVLSYTVS  170 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~-l-~~g--~~~~~W~~L~~k--~g~~~~GeI~L~L~~~p~  170 (349)
                      -+..+.+|.+.++|... + ..+  .....||+|.+-  .-.+.+-+|.+.+.....
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            56678999999999955 1 222  457789999764  233456788888887543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.49  E-value=0.003  Score=50.90  Aligned_cols=94  Identities=10%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             EEEEEEeecCCCCCCCCC-CCcEEEE--EECCe-EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCC
Q psy3181          50 NITVVQAKLVKNYGLVTK-MDPYVRL--RVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTM  122 (349)
Q Consensus        50 ~V~Iv~ArnL~~~d~~G~-sDPYV~V--~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~sk  122 (349)
                      -++++.+++|.-....|. ..-|++-  ++.+. .++|.+ +++..||+|.|+|.|.+.-.   +-.|.+.|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            478899999865544332 2234442  34443 456665 45567999999999997532   5778899998  3556


Q ss_pred             CceeEEEEEeCCccccCCcceeeEEE
Q psy3181         123 DELIAWAKIPIPSSVMKGETHEDWFP  148 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g~~~~~W~~  148 (349)
                      .+.||.+.+.+.+ .... ..+.|.+
T Consensus        79 Ke~iG~~sL~l~s-~gee-E~~HW~e  102 (103)
T cd08684          79 KRTIGECSLSLRT-LSTQ-ETDHWLE  102 (103)
T ss_pred             cceeeEEEeeccc-CCHH-Hhhhhhc
Confidence            7899999999984 3222 2445643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.20  E-value=0.066  Score=47.44  Aligned_cols=128  Identities=14%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             CCcceEEEEEEEEeecCCCCCCC--CCCCc--EEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC------------
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLV--TKMDP--YVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG------------  106 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~--G~sDP--YV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~------------  106 (349)
                      .+..--|+|+|..|+-+-..-..  +..+.  .+-+.+++++++|+.+.- +.+|.|+|.|-|++...            
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhh
Confidence            45556799999998764321110  33333  444567899999999876 55999999999997533            


Q ss_pred             --CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcc-eeeEEEccCCCC--CCcceEEEEEEEEEEcc
Q psy3181         107 --VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGET-HEDWFPLSGKQG--EDKEGMINLVLSYTVSF  171 (349)
Q Consensus       107 --~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~-~~~W~~L~~k~g--~~~~GeI~L~L~~~p~~  171 (349)
                        .+.+++.|.-.|..+...++|...++-..++..+.. ...-..|.+...  +-..|-|.|++.+.|..
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence              266888888888777678999999988877765542 122344544322  23679999999987754

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=96.17  E-value=0.0081  Score=51.53  Aligned_cols=65  Identities=14%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             CCcceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccc
Q psy3181         250 NPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSA  311 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  311 (349)
                      +.-|+|.|+|+++.-......     |||.+..|.. |+        ||. |||.+...+    .+.+.++|+|...|+.
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~-Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPK-WNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCc-cCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            466999999999997765433     9999999875 65        888 999766544    4578999999999988


Q ss_pred             cCcc
Q psy3181         312 NKPI  315 (349)
Q Consensus       312 ~~~~  315 (349)
                      ++.|
T Consensus        91 d~~l   94 (136)
T cd08375          91 DDFL   94 (136)
T ss_pred             CCee
Confidence            8755

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>KOG3837|consensus

Probab=96.13  E-value=0.005  Score=61.77  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC------------
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG------------  106 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~------------  106 (349)
                      .....|.+.|+++.+++....---.|-|+++++.     ..+.+|.+++.+ .+|.|+|.|.+.+..+            
T Consensus       364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR~fk  442 (523)
T KOG3837|consen  364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQRRFK  442 (523)
T ss_pred             cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHHHHH
Confidence            3444566777777776544322234678888763     346678888874 4999999999987542            


Q ss_pred             CeEEEEEEeecCCCC-CCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         107 VTSIYLEIYDECSFT-MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       107 ~~~L~I~V~D~d~~s-kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      ...++|++|.+..+- +|.++|.+.+.|. .+...-.....++|... .....|.|.+++...
T Consensus       443 r~g~kfeifhkggf~rSdkl~gt~nikle-~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLE-ILENMCEICEYLPLKDG-RKAVGGKLEVKVRIR  503 (523)
T ss_pred             hcCeeEEEeeccccccccceeceeeeeeh-hhhcccchhhceecccc-ccccCCeeEEEEEEe
Confidence            256899999987654 5789999999999 56655445567777532 245679999988863

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.11  E-value=0.3  Score=41.51  Aligned_cols=122  Identities=9%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEEEecCCCCCCCccceEEEEEec----c-----CCeEEEE
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC---VYETHTDPSGGKFPRWNKEVFCLLP----Q-----GVTSIYL  112 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~---~~kTkvvk~~~~nP~WnEtF~F~V~----~-----~~~~L~I  112 (349)
                      ..-.+.|+|.+..+++..    ...-|++...+..   ...|.........-.|||.|.+.+.    .     ....+.|
T Consensus         5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            345678899999988772    2345666666654   2445443333337899999988742    1     1366889


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCC-cceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g-~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      .|+....-++...+|.+.|+|.+-.... .....-++|...  ......|.|.+.+.+..+
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE  139 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence            9998753333368999999999654432 334555666543  345678999888876543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04032 C2_Perforin C2 domain of Perforin

Probab=95.43  E-value=0.02  Score=48.81  Aligned_cols=67  Identities=10%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             CCCcceEEEEeeeeeeccccCc----CceeEEecee-ec--------CChhhHhhhhhh---h--heeeeeeeeeccccc
Q psy3181         249 QNPVGRLNITVVQILSIGRYLV----PTYQIVSGAY-YR--------SSRSEQEVCSCK---F--LALIKLDILDTYLFS  310 (349)
Q Consensus       249 ~~~~g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~--------~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~  310 (349)
                      .+..|+|.|+|++++-+.....    ||++|..|.. |+        ||. |||.+.-.   +  ...+.++|+|...|+
T Consensus        24 ~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPv-WNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          24 RRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPR-WNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCc-CCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            3566999999999997654333    9999998654 54        899 99966542   2  568899999999998


Q ss_pred             ccCccc
Q psy3181         311 ANKPIP  316 (349)
Q Consensus       311 ~~~~~~  316 (349)
                      .++.|-
T Consensus       103 ~dd~IG  108 (127)
T cd04032         103 DDDLLG  108 (127)
T ss_pred             CCCeeE
Confidence            888664

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.11  E-value=0.17  Score=44.94  Aligned_cols=85  Identities=22%  Similarity=0.242  Sum_probs=58.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEe
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIY  115 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~  115 (349)
                      ...++|+|+.+.++.-.+   .+|-||.+.+  |++.    ..|+.+.  ..++.|||.+.|.+.-    .+..|.|+||
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~   81 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEE
Confidence            346899999999887543   3578888754  4432    2344333  2489999999998642    2688999999


Q ss_pred             ecCCCC----CCceeEEEEEeCCc
Q psy3181         116 DECSFT----MDELIAWAKIPIPS  135 (349)
Q Consensus       116 D~d~~s----kdd~LG~v~I~L~e  135 (349)
                      +.....    ....+|.+.++|-+
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEEC
Confidence            965321    12468998888773

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=95.09  E-value=0.031  Score=48.72  Aligned_cols=62  Identities=21%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             ceEEEEeeeeeeccccCc----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         253 GRLNITVVQILSIGRYLV----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      |.|.|+|+++.-......    ||+.+..|.. ++        ||. |||.....+   ...+.++|+|...|+.++.|
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~-WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~i   79 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPV-WNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM   79 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCe-ecccEEEEecCCCCEEEEEEEECCCCCCCCEE
Confidence            899999999985543333    9999999875 55        788 999655544   45789999999999988765

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.83  E-value=0.17  Score=45.37  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEee
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYD  116 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D  116 (349)
                      ..++|+|+.+.++...+  ...+-||.+.+  |++.    ..|+...- ..++.|||.+.|.+.-    .+..|.|+||+
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            46899999999987622  23555666643  4432    34544332 2479999999998642    26889999999


Q ss_pred             cCCCC----------------CCceeEEEEEeCC
Q psy3181         117 ECSFT----------------MDELIAWAKIPIP  134 (349)
Q Consensus       117 ~d~~s----------------kdd~LG~v~I~L~  134 (349)
                      .....                .+..||.+.++|-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LF  118 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVF  118 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEE
Confidence            65322                1356777777765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=94.72  E-value=0.05  Score=45.47  Aligned_cols=62  Identities=15%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             ceEEEEeeeeeeccccCc-----CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCc
Q psy3181         253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKP  314 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  314 (349)
                      |.|.|+|+++.-.++...     ||+.+.++-.  ++        ||. ||+.+...+   ...++++|+|...|+.++.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~-Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPV-WDEVLYVPVTSPNQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCc-cCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            789999999987666533     9999998532  33        788 999876644   4678999999988887765


Q ss_pred             c
Q psy3181         315 I  315 (349)
Q Consensus       315 ~  315 (349)
                      |
T Consensus        80 I   80 (120)
T cd04045          80 L   80 (120)
T ss_pred             e
Confidence            4

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.68  E-value=0.38  Score=39.09  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             CCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeE
Q psy3181          68 MDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW  146 (349)
Q Consensus        68 sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W  146 (349)
                      ++-.+++++.+. ..+|.-.  ...+..|++.|.|.+.. +..|+|.||-.|-   ..+.|...+.|++ ...+    .-
T Consensus         9 ~eV~avLklDn~~VgqT~Wk--~~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd-~~~~----~~   77 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWK--PKSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLED-ERHE----VQ   77 (98)
T ss_pred             cceEEEEEEcCeEEeecccc--ccccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhh-hccc----ce
Confidence            567888888874 4455542  23489999999999944 5899999998874   3477888888886 2212    22


Q ss_pred             EEccCCCCCCcceEEEEEEEE
Q psy3181         147 FPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       147 ~~L~~k~g~~~~GeI~L~L~~  167 (349)
                      .+|.      ..|.+...++|
T Consensus        78 ~~le------pqg~l~~ev~f   92 (98)
T cd08687          78 LDME------PQLCLVAELTF   92 (98)
T ss_pred             eccc------cccEEEEEEEe
Confidence            2333      35888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=94.63  E-value=0.055  Score=44.49  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             ceEEEEeeeeeeccc--------cCc-CceeEEecee-ec--------CChhhHhhhhhhhh-----eeeeeeeeecccc
Q psy3181         253 GRLNITVVQILSIGR--------YLV-PTYQIVSGAY-YR--------SSRSEQEVCSCKFL-----ALIKLDILDTYLF  309 (349)
Q Consensus       253 g~lsiti~~~~~~~~--------~~~-~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  309 (349)
                      |.|.|||++|.-...        +.+ ||+.|..|.. |+        ||. |||.+...+.     ..+.++|+|.-.|
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPv-Wne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPV-FNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCc-ccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            889999999987643        224 9999998744 55        899 9998776652     1467889998888


Q ss_pred             cccCccc
Q psy3181         310 SANKPIP  316 (349)
Q Consensus       310 ~~~~~~~  316 (349)
                      +.++.|-
T Consensus        80 ~~dd~IG   86 (108)
T cd04039          80 SFNDYVA   86 (108)
T ss_pred             CCCcceE
Confidence            8777653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=94.48  E-value=0.052  Score=45.08  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             ceEEEEeeeeeeccccCc-----CceeEEecee-ec---------CChhhHhhhhhhh-------heeeeeeeeeccccc
Q psy3181         253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR---------SSRSEQEVCSCKF-------LALIKLDILDTYLFS  310 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  310 (349)
                      |+|.|+|+++.-.++...     ||+.+.++.. ++         ||. ||+.....+       ...+.++|+|...|.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~-Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   79 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPE-WNEKFKFTVEYPGWGGDTKLILRIMDKDNFS   79 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCc-ccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence            789999999997766443     9999988654 33         777 999554433       246889999999888


Q ss_pred             ccCcc
Q psy3181         311 ANKPI  315 (349)
Q Consensus       311 ~~~~~  315 (349)
                      .++.|
T Consensus        80 ~d~~i   84 (124)
T cd04049          80 DDDFI   84 (124)
T ss_pred             CCCeE
Confidence            76654

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=94.36  E-value=0.057  Score=45.36  Aligned_cols=63  Identities=11%  Similarity=0.106  Sum_probs=48.6

Q ss_pred             ceEEEEeeeeeeccccCc----CceeEEecee--ec--------CChhhHhhhhhhh--heeeeeeeeecccccccCccc
Q psy3181         253 GRLNITVVQILSIGRYLV----PTYQIVSGAY--YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSANKPIP  316 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~--~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  316 (349)
                      -+|.|+|+++.+.+....    ||+++.+|..  ++        ||. |||.+...+  -..+.++|+|...++.++.|-
T Consensus         2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~-Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPK-WNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCc-cccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence            369999999988766553    9999988754  33        888 999666554  567889999999988877653

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.17  E-value=0.3  Score=42.57  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=57.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEee
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHC----VYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYD  116 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~----~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D  116 (349)
                      ..++|++....++...+ ....+-|+.+.+  |++    ...|+.... ..++.|||.+.|.+.-    .+..|.|+||+
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            45778888887775521 123455666643  443    223333322 2489999999998642    26889999999


Q ss_pred             cCCCC--CCceeEEEEEeCCc
Q psy3181         117 ECSFT--MDELIAWAKIPIPS  135 (349)
Q Consensus       117 ~d~~s--kdd~LG~v~I~L~e  135 (349)
                      .+..+  .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEc
Confidence            76544  46789999999873

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=93.81  E-value=0.098  Score=42.82  Aligned_cols=62  Identities=8%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             ceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      |.|.|+|+++.-...-.+     ||+.|..+.. ++        ||. |++.....+   -..+.++|+|...|..++.|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~-W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPE-WNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL   79 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCc-cCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence            789999999986654332     9999988754 44        788 998554333   45688889998888776644

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.71  E-value=0.3  Score=43.55  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecC--C-CCCCCccceEEEEEecc----CCeEEE
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDP--S-GGKFPRWNKEVFCLLPQ----GVTSIY  111 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk--~-~~~nP~WnEtF~F~V~~----~~~~L~  111 (349)
                      ....+.|+|..+.+++........|-|+.+.+  |++.    ..|+...  + -...+.|||.+.|.+.-    .+..|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            34568899999999987765556778888754  4443    2343211  1 12257799999998642    268899


Q ss_pred             EEEeecCCCC---------CCceeEEEEEeCCc
Q psy3181         112 LEIYDECSFT---------MDELIAWAKIPIPS  135 (349)
Q Consensus       112 I~V~D~d~~s---------kdd~LG~v~I~L~e  135 (349)
                      |+||+....+         .+..||.+.++|-+
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            9999976443         34688888888763

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=93.54  E-value=0.098  Score=42.91  Aligned_cols=61  Identities=15%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             ceEEEEeeeeeeccccC---c--CceeEEecee-ec---------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181         253 GRLNITVVQILSIGRYL---V--PTYQIVSGAY-YR---------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK  313 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  313 (349)
                      |.|.|+|+++.-..+..   .  ||+.+.+|.. ++         ||. |||...-.+    -..+.++|+|...++ ++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~-Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPE-WDEELRFEITEDKKPILKVAVFDDDKRK-PD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCc-cCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence            78999999999665433   2  9999998753 33         787 998755444    346889999987765 54


Q ss_pred             cc
Q psy3181         314 PI  315 (349)
Q Consensus       314 ~~  315 (349)
                      .|
T Consensus        79 ~i   80 (118)
T cd08681          79 LI   80 (118)
T ss_pred             ce
Confidence            43

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=93.51  E-value=0.083  Score=43.44  Aligned_cols=62  Identities=16%  Similarity=0.052  Sum_probs=47.9

Q ss_pred             ceEEEEeeeeeeccccC----c--CceeEEece--e-ec--------CChhhHhhhhhhh---heeeeeeeeeccccccc
Q psy3181         253 GRLNITVVQILSIGRYL----V--PTYQIVSGA--Y-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSAN  312 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~----~--~~~~~~~~~--~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  312 (349)
                      |+|.|+|+++.-..+.+    .  |||.+..+.  . ++        ||. |||.....+   -..+.++|+|...|..+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~-Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPV-WNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCc-ceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            89999999999766432    2  999999976  2 55        888 999875543   55788999999888777


Q ss_pred             Ccc
Q psy3181         313 KPI  315 (349)
Q Consensus       313 ~~~  315 (349)
                      +.|
T Consensus        81 ~~i   83 (124)
T cd04044          81 KLI   83 (124)
T ss_pred             cee
Confidence            665

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1452|consensus

Probab=93.38  E-value=0.15  Score=49.80  Aligned_cols=120  Identities=11%  Similarity=0.005  Sum_probs=74.3

Q ss_pred             CCCCcceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeec
Q psy3181          41 LIQNPVGRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDE  117 (349)
Q Consensus        41 ~~~~~~G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~  117 (349)
                      ......|.|.+++..+++|+....  .-+-+-||++.+..+ ..+|.+.. ....-.|.|+|...+-.. +.+.+-||.|
T Consensus        45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-~vl~~lvySW  122 (442)
T KOG1452|consen   45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVNI-EVLHYLVYSW  122 (442)
T ss_pred             eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeecccc-eeeeEEEeec
Confidence            345668999999999999965433  456788999998753 55666533 344678999999887543 6778888888


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      +.-.++++.-..-+.+.-+...++  +.-+.|.-.    .+|.+-+.+.++
T Consensus       123 ~pq~RHKLC~~g~l~~~~v~rqsp--d~~~Al~le----Prgq~~~r~~~~  167 (442)
T KOG1452|consen  123 PPQRRHKLCHLGLLEAFVVDRQSP--DRVVALYLE----PRGQPPLRLPLA  167 (442)
T ss_pred             CchhhccccccchhhhhhhhhcCC--cceeeeecc----cCCCCceecccC
Confidence            865556543333333332222232  222233211    246666666653

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.36  E-value=0.29  Score=43.40  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=56.7

Q ss_pred             CCCCcEEEEEE--CCe----EEEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecCCCCCCceeEEEEEeCCc
Q psy3181          66 TKMDPYVRLRV--GHC----VYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDECSFTMDELIAWAKIPIPS  135 (349)
Q Consensus        66 G~sDPYV~V~l--g~~----~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d~~skdd~LG~v~I~L~e  135 (349)
                      ..+|-||.+.+  ++.    ...|+...- +..+.|||...|++.-    .+..|.|+|||.+..++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            34667777754  333    234444333 3378899999998753    268899999998765567789999999773


Q ss_pred             cccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       136 ~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                       . ++.       |       ..|...+.++.
T Consensus       107 -~-~g~-------L-------r~G~~~l~lw~  122 (159)
T cd08397         107 -K-DGT-------L-------RRGRQKLRVWP  122 (159)
T ss_pred             -C-CCc-------E-------ecCCEEEEEEe
Confidence             2 221       2       24788887774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=93.14  E-value=0.13  Score=42.53  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=44.7

Q ss_pred             eEEEEeeeeeeccccC---c--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181         254 RLNITVVQILSIGRYL---V--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  315 (349)
                      ||.|+|+++.-.....   .  ||+.|..|.. ++        ||. |||.+...+    ...+.++|+|...|..++.|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPR-WNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCc-cCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            6899999998553322   2  9999998754 44        798 999776554    34588889998888776654

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=92.26  E-value=0.15  Score=42.58  Aligned_cols=71  Identities=23%  Similarity=0.233  Sum_probs=47.8

Q ss_pred             EEEEeeeeeecccc---Cc--CceeEEecee-ec--------CChhhHhhhhhhh---------heeeeeeeeecccccc
Q psy3181         255 LNITVVQILSIGRY---LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---------LALIKLDILDTYLFSA  311 (349)
Q Consensus       255 lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  311 (349)
                      +.|+|++|.-....   |.  ||+.+..|.. ++        ||+ |||.+.-.+         ...+.+.|+|...|+.
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~-Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPV-WKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCE-eCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            36788887755432   22  9999998765 55        999 999654433         3467899999998988


Q ss_pred             cCccchhhhhhhhhhhhh
Q psy3181         312 NKPIPLLKKFKIRTRSLF  329 (349)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~  329 (349)
                      ++.|-   ++.+...++.
T Consensus        80 d~~iG---~~~i~l~~l~   94 (126)
T cd08682          80 DKFLG---QVSIPLNDLD   94 (126)
T ss_pred             CceeE---EEEEEHHHhh
Confidence            77543   3344444443

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=92.14  E-value=0.22  Score=41.25  Aligned_cols=61  Identities=10%  Similarity=0.024  Sum_probs=45.8

Q ss_pred             eEEEEeeeeeeccccCc-----CceeEEece-e-ec---------CChhhHhhhhhhh--------heeeeeeeeecccc
Q psy3181         254 RLNITVVQILSIGRYLV-----PTYQIVSGA-Y-YR---------SSRSEQEVCSCKF--------LALIKLDILDTYLF  309 (349)
Q Consensus       254 ~lsiti~~~~~~~~~~~-----~~~~~~~~~-~-~~---------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  309 (349)
                      .|.|+|+++...++...     ||+.|.+|. . +.         ||. |||.+.-.+        ...++++|+|...|
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~-Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~   79 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPT-WNETLRFPLDERLLQQGRLALTIEVYCERPS   79 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCC-CCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence            37899999988876553     899999866 2 22         778 999554333        36899999999988


Q ss_pred             cccCcc
Q psy3181         310 SANKPI  315 (349)
Q Consensus       310 ~~~~~~  315 (349)
                      ..++.|
T Consensus        80 ~~~~~l   85 (125)
T cd04051          80 LGDKLI   85 (125)
T ss_pred             CCCCcE
Confidence            877765

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=91.56  E-value=0.33  Score=40.11  Aligned_cols=62  Identities=21%  Similarity=0.296  Sum_probs=44.3

Q ss_pred             ceEEEEeeeeeeccc-----cCc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeeccccccc
Q psy3181         253 GRLNITVVQILSIGR-----YLV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSAN  312 (349)
Q Consensus       253 g~lsiti~~~~~~~~-----~~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  312 (349)
                      |.|.|+|+++.-...     .+.  |||.+..|.. ++        ||. ||+.+...+    ...+.++|+|...++.+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~-Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPK-WNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCc-cCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999974432     233  9999988755 55        787 999665444    45677888998888766


Q ss_pred             Ccc
Q psy3181         313 KPI  315 (349)
Q Consensus       313 ~~~  315 (349)
                      +.|
T Consensus        80 ~~l   82 (128)
T cd04024          80 DYL   82 (128)
T ss_pred             Ccc
Confidence            543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=91.07  E-value=0.34  Score=40.69  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             cceEEEEeeeeeecccc-------------Cc--CceeEEecee-e-c--------CChhhHhhhhhhh--heeeeeeee
Q psy3181         252 VGRLNITVVQILSIGRY-------------LV--PTYQIVSGAY-Y-R--------SSRSEQEVCSCKF--LALIKLDIL  304 (349)
Q Consensus       252 ~g~lsiti~~~~~~~~~-------------~~--~~~~~~~~~~-~-~--------~~~~~~~~~~~~~--~~~~~~~~~  304 (349)
                      .|.|.|+|++++-....             |.  |||.+.+|.. + .        ||+ |||-....+  -..+.+.|+
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~-Wne~f~~~v~~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPV-WNEEFTTEVHNGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCC-cceeEEEEcCCCCEEEEEEE
Confidence            49999999999766432             23  9999999854 2 1        788 999877665  456777788


Q ss_pred             ecccccccCcc
Q psy3181         305 DTYLFSANKPI  315 (349)
Q Consensus       305 ~~~~~~~~~~~  315 (349)
                      |...+..++.|
T Consensus        82 d~~~~~~~~~i   92 (132)
T cd04014          82 HDAAIGPDDFV   92 (132)
T ss_pred             eCCCCCCCceE
Confidence            88777766543

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=90.64  E-value=0.4  Score=41.11  Aligned_cols=61  Identities=7%  Similarity=-0.094  Sum_probs=45.8

Q ss_pred             ceEEEEeeeeeeccccCc--CceeEEecee-ec-------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         253 GRLNITVVQILSIGRYLV--PTYQIVSGAY-YR-------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~--~~~~~~~~~~-~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      |+|.|+|++|...+.-+-  ||+.|..|-+ +.       ||+ |||+..-..   -..+.++|.|.-.+ .|+.+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~-WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l   75 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPC-WEQDFMFEINRLDLGLVIELWNKGLI-WDTLV   75 (127)
T ss_pred             ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCc-eeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence            789999999998865443  9999999775 44       888 999876543   33488999997654 55544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=90.61  E-value=0.39  Score=39.68  Aligned_cols=61  Identities=11%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             eEEEEeeeeeeccccC---c--CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         254 RLNITVVQILSIGRYL---V--PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      +|.|+|+++.-.....   -  ||+++..+..  |+        ||. |||.....+   -..+.++|+|...|+.++.|
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~-Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPV-WDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCc-cceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence            4789999887554322   2  9999998642  55        888 998765543   45788999999999877755

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=90.18  E-value=0.48  Score=39.74  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             ceEEEEeeeeeeccccCc--CceeEEecee--ec-------CChhhHhhhhhhh----heeeeeeeeecccccccCccc
Q psy3181         253 GRLNITVVQILSIGRYLV--PTYQIVSGAY--YR-------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPIP  316 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~--~~~~~~~~~~--~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  316 (349)
                      ..|.|+|++|.-....+.  |||.|.+|..  .+       ||. |||-.+-..    +..+.+.++|...|+.++.|-
T Consensus         4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~~~~nP~-WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG   81 (126)
T cd08400           4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPV-WSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA   81 (126)
T ss_pred             eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecCCCCCCc-cCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence            469999999988777665  9999998753  23       888 999766543    356788889998888887653

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>KOG1329|consensus

Probab=90.02  E-value=0.79  Score=50.33  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             CCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeE
Q psy3181          68 MDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW  146 (349)
Q Consensus        68 sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W  146 (349)
                      .++|+.+.+... ..+|....+...+|.|.+.|..........+.+.+-+.+..+....+|.+.++.. .+..+.....|
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~-~~~~~~~~~~~  216 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFL-QYCSGHRIGGW  216 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchh-hhhccccccce
Confidence            478888887653 3455555555468999999988887778899999999888776789999999999 56666778899


Q ss_pred             EEccCCCCC--CcceEEEEEEEEEEccc
Q psy3181         147 FPLSGKQGE--DKEGMINLVLSYTVSFF  172 (349)
Q Consensus       147 ~~L~~k~g~--~~~GeI~L~L~~~p~~~  172 (349)
                      +++...++.  ...-.+.+.+.|.+...
T Consensus       217 ~~Il~~d~~~~~~~~~~~~~~~~~~~~~  244 (887)
T KOG1329|consen  217 FPILDNDGKPHQKGSNESLRLGFTPMEK  244 (887)
T ss_pred             eeeeccCCccccCCcccceEEeeEeech
Confidence            998654332  22234667778776554

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.49  E-value=2.9  Score=37.80  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecC
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV---YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDEC  118 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~---~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d  118 (349)
                      .++|+|..+.++ ..+......-||.+.+  |+..   .+|+...- +.++.|||.+.|.+.-    ....|.|+||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            577788887633 2222122234555432  4332   24444333 3479999999998642    2688999999964

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=89.19  E-value=0.47  Score=40.32  Aligned_cols=56  Identities=11%  Similarity=0.079  Sum_probs=41.1

Q ss_pred             eEEEEeeeeee----cccc--Cc--CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeeccccc
Q psy3181         254 RLNITVVQILS----IGRY--LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFS  310 (349)
Q Consensus       254 ~lsiti~~~~~----~~~~--~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  310 (349)
                      .|.|+|++|.-    -..-  |-  |||.|..|.. ++        ||. |||...-.+   ...+.++|+|...++
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~-WnE~f~f~v~~~~~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPR-WNEQYTWPVYDPCTVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCc-ceeEEEEEecCCCCEEEEEEEECCCcc
Confidence            47888988873    3222  22  9999999988 76        899 999776544   346888999988774

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=88.57  E-value=2.2  Score=36.59  Aligned_cols=54  Identities=17%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             EEEecCCCCCCCccceEEEEEec----cCCeEEEEEEeecCCCCCC----ceeEEEEEeCCc
Q psy3181          82 ETHTDPSGGKFPRWNKEVFCLLP----QGVTSIYLEIYDECSFTMD----ELIAWAKIPIPS  135 (349)
Q Consensus        82 kTkvvk~~~~nP~WnEtF~F~V~----~~~~~L~I~V~D~d~~skd----d~LG~v~I~L~e  135 (349)
                      .|+...-+..++.|||.+.|.+.    +.+..|.|+||+.+.....    ..||.+.++|-+
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd   84 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD   84 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence            45443332248999999999864    2369999999998766544    689999999873

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=88.50  E-value=0.4  Score=35.83  Aligned_cols=60  Identities=15%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             EEEEeeeeeeccccCc-----CceeEEecee----ec--------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181         255 LNITVVQILSIGRYLV-----PTYQIVSGAY----YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK  313 (349)
Q Consensus       255 lsiti~~~~~~~~~~~-----~~~~~~~~~~----~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  313 (349)
                      |.|+|++|.-......     ||+++.++..    ++        +|. |++.+.-.+    .+.+.++|+|...|..++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~-w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPV-WNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEE-EEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccce-eeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence            7899999998777433     8888888652    33        777 998776553    777999999999998766


Q ss_pred             cc
Q psy3181         314 PI  315 (349)
Q Consensus       314 ~~  315 (349)
                      -|
T Consensus        80 ~i   81 (85)
T PF00168_consen   80 LI   81 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=88.42  E-value=0.79  Score=37.71  Aligned_cols=64  Identities=13%  Similarity=0.017  Sum_probs=45.0

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEece------eec--------CChhhHhhhhhhh-------heeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA------YYR--------SSRSEQEVCSCKF-------LALIKLDIL  304 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~------~~~--------~~~~~~~~~~~~~-------~~~~~~~~~  304 (349)
                      ..|+|.|+|+++.-......     ||++|..+.      -++        ||. |||...-..       -..+.++|+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE-WNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc-cccEEEEcccCHHHhCCCEEEEEEE
Confidence            46899999999986544322     999998753      122        787 998643322       346889999


Q ss_pred             ecccccccCcc
Q psy3181         305 DTYLFSANKPI  315 (349)
Q Consensus       305 ~~~~~~~~~~~  315 (349)
                      |...|+.++-|
T Consensus        93 d~~~~~~~~~i  103 (125)
T cd04031          93 DYDRDGENDFL  103 (125)
T ss_pred             eCCCCCCCcEe
Confidence            99888777644

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.14  E-value=10  Score=33.72  Aligned_cols=82  Identities=22%  Similarity=0.290  Sum_probs=54.6

Q ss_pred             CcEEEEEECCeE-EEEEecCC-CCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccC---Ccce
Q psy3181          69 DPYVRLRVGHCV-YETHTDPS-GGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMK---GETH  143 (349)
Q Consensus        69 DPYV~V~lg~~~-~kTkvvk~-~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~---g~~~  143 (349)
                      .-|++|.++++. .+|+...- ....-.+||.|.+.+..--..|.++||.... ..+..|+++.+++-..-..   ....
T Consensus        38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~~~  116 (168)
T PF15625_consen   38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDNVP  116 (168)
T ss_pred             eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccCCc
Confidence            458888888754 44444322 1123456788999987767899999999887 5688999999998743221   1114


Q ss_pred             eeEEEccC
Q psy3181         144 EDWFPLSG  151 (349)
Q Consensus       144 ~~W~~L~~  151 (349)
                      ..|+...+
T Consensus       117 ~~~~eFsS  124 (168)
T PF15625_consen  117 LEEYEFSS  124 (168)
T ss_pred             eEeEEEcC
Confidence            45666643

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=87.70  E-value=0.73  Score=38.33  Aligned_cols=57  Identities=14%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             EEEEeeeeeeccccC---c--CceeEEec-ee-ec--------CChhhHhhhhhhh--heeeeeeeeeccccccc
Q psy3181         255 LNITVVQILSIGRYL---V--PTYQIVSG-AY-YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSAN  312 (349)
Q Consensus       255 lsiti~~~~~~~~~~---~--~~~~~~~~-~~-~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  312 (349)
                      |-|+|++++-....+   .  |||.|..+ .. |+        ||+ |||.+.-.+  ...+.++|+|...|..+
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~-Wne~f~~~~~~~~~l~i~V~d~~~~~~~   75 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPK-WNEHFDLTVGPSSIITIQVFDQKKFKKK   75 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCc-ccceEEEEeCCCCEEEEEEEECCCCCCC
Confidence            678999988554333   2  99999984 33 55        899 998766554  56788999998888653

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=87.56  E-value=0.89  Score=37.03  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=46.9

Q ss_pred             ceEEEEeeeeeecccc---------Cc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeeccc
Q psy3181         253 GRLNITVVQILSIGRY---------LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYL  308 (349)
Q Consensus       253 g~lsiti~~~~~~~~~---------~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~  308 (349)
                      |.|.|+|+++.-....         |.  |||.+..|.. |+        ||. |||.....+    -..+.++++|...
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~-W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPK-WNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCc-ccceEEEEeCCCCCCEEEEEEEecCC
Confidence            7899999999755432         23  9999999754 54        788 999754333    4467788888877


Q ss_pred             ccccCccchhhhhhhhhhhh
Q psy3181         309 FSANKPIPLLKKFKIRTRSL  328 (349)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~  328 (349)
                      + .++   .+-++.+...++
T Consensus        80 ~-~~~---~iG~~~i~l~~l   95 (121)
T cd08391          80 D-KDD---FLGRLSIDLGSV   95 (121)
T ss_pred             C-CCC---cEEEEEEEHHHh
Confidence            6 443   233444444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=87.30  E-value=0.97  Score=38.23  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=44.8

Q ss_pred             eEEEEeeeeeeccc---cCc--CceeEEecee-ec--------CChhhHhhhhhhhh-------------eeeeeeeeec
Q psy3181         254 RLNITVVQILSIGR---YLV--PTYQIVSGAY-YR--------SSRSEQEVCSCKFL-------------ALIKLDILDT  306 (349)
Q Consensus       254 ~lsiti~~~~~~~~---~~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-------------~~~~~~~~~~  306 (349)
                      +|-|+|+++.-...   .|.  ||+.|..|.. ++        ||. |||...-..+             ..+.++|+|.
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~-Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPT-WDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCc-cCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            68888988875432   222  8999988654 55        888 9997654321             3588999999


Q ss_pred             ccccccCccchh
Q psy3181         307 YLFSANKPIPLL  318 (349)
Q Consensus       307 ~~~~~~~~~~~~  318 (349)
                      ..++.++.|--.
T Consensus        81 d~~~~d~~iG~~   92 (135)
T cd04017          81 DSVGKDEFLGRS   92 (135)
T ss_pred             cCCCCCccceEE
Confidence            888887766433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>KOG1327|consensus

Probab=87.29  E-value=1.5  Score=45.88  Aligned_cols=79  Identities=20%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCcEEEEEEC-------------------CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCC
Q psy3181          60 KNYGLVTKMDPYVRLRVG-------------------HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECS  119 (349)
Q Consensus        60 ~~~d~~G~sDPYV~V~lg-------------------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~  119 (349)
                      .+.|..++.||-|.+...                   .+..+|.++.+ ..||.|-+.|.+....+ ...+++.++|-+.
T Consensus         3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~   81 (529)
T KOG1327|consen    3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS   81 (529)
T ss_pred             cccccccccCceeeeeccCCCccccccccccccccccccccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCC
Confidence            344556777777776431                   12346777766 55999999988875443 5789999999764


Q ss_pred             C----CCCceeEEEEEeCCccccC
Q psy3181         120 F----TMDELIAWAKIPIPSSVMK  139 (349)
Q Consensus       120 ~----skdd~LG~v~I~L~e~l~~  139 (349)
                      .    ...+|+|++...+.+.+..
T Consensus        82 ~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   82 RTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             ccCCcchhcccceeeeehhhhhhh
Confidence            3    4578999999999976653

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=87.17  E-value=1.1  Score=36.49  Aligned_cols=62  Identities=15%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             ceEEEEeeeeeeccc---c-Cc--CceeEEec---ee-ec--------CChhhHhhhhhhh-------heeeeeeeeecc
Q psy3181         253 GRLNITVVQILSIGR---Y-LV--PTYQIVSG---AY-YR--------SSRSEQEVCSCKF-------LALIKLDILDTY  307 (349)
Q Consensus       253 g~lsiti~~~~~~~~---~-~~--~~~~~~~~---~~-~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~  307 (349)
                      |.|.|+|+++.-...   . |.  ||+.+..+   .. ++        ||. |||.+.-.+       -..+.++|+|.-
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPV-WEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCc-cceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            789999999985432   2 33  99999762   11 22        888 999775433       246888999998


Q ss_pred             cccccCcc
Q psy3181         308 LFSANKPI  315 (349)
Q Consensus       308 ~~~~~~~~  315 (349)
                      .|+.++.|
T Consensus        80 ~~~~dd~l   87 (111)
T cd04041          80 RFTADDRL   87 (111)
T ss_pred             CCCCCCcc
Confidence            88877644

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=86.28  E-value=1.2  Score=37.18  Aligned_cols=61  Identities=13%  Similarity=0.044  Sum_probs=42.7

Q ss_pred             cceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCc
Q psy3181         252 VGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKP  314 (349)
Q Consensus       252 ~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  314 (349)
                      -+.|.|+|+++.-.+....     |||.|..|.. ++        ||. |||...-..   ...+.++|+|...+. ++.
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~   79 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPE-FDTQAIFYRKKPRSPIKIQVWNSNLLC-DEF   79 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCc-ccceEEEEecCCCCEEEEEEEECCCCC-CCc
Confidence            3678999999986655422     9999988654 55        888 999763322   346888999876664 443

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=86.15  E-value=1.1  Score=36.04  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             EEEEeeeeeeccccC---c--CceeEEecee-ec--------CChhhHhhhhhhhh----eeeeeeeeecccccccCccc
Q psy3181         255 LNITVVQILSIGRYL---V--PTYQIVSGAY-YR--------SSRSEQEVCSCKFL----ALIKLDILDTYLFSANKPIP  316 (349)
Q Consensus       255 lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  316 (349)
                      |.|+|++|+-.....   .  ||+.|..|.. ++        ||+ |||...-.+.    ..+.++|+|...   ++   
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~v~~~~~~~l~v~v~d~~~---~~---   74 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPV-WEEGFTFLVRNPENQELEIEVKDDKT---GK---   74 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCc-ccceEEEEeCCCCCCEEEEEEEECCC---CC---
Confidence            789999988775433   2  9999998755 44        888 9997665553    357888888754   22   


Q ss_pred             hhhhhhhhhhhhhhhhhccccccccccccCCC
Q psy3181         317 LLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLG  348 (349)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (349)
                      .+-++.+...+|...    +.-...++.||.+
T Consensus        75 ~iG~~~i~l~~l~~~----~~~~~~~w~~L~~  102 (105)
T cd04050          75 SLGSLTLPLSELLKE----PDLTLDQPFPLDN  102 (105)
T ss_pred             ccEEEEEEHHHhhcc----ccceeeeeEecCC
Confidence            233444444444321    1223556666654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=85.80  E-value=1.1  Score=36.46  Aligned_cols=61  Identities=13%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             eEEEEeeeeeecccc---Cc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181         254 RLNITVVQILSIGRY---LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       254 ~lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  315 (349)
                      .|.|+|+++.-....   |.  ||+.+..|.. ++        ||. |||...-.+    -..+.++++|...|+.++.|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQ-WLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCc-eeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            367888888754433   22  9999998754 44        888 999654332    35678888999888777654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=85.30  E-value=1.1  Score=39.30  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=43.7

Q ss_pred             CcceEEEEeeeeeeccccC----------------------------------c-CceeEEecee--ec--------CCh
Q psy3181         251 PVGRLNITVVQILSIGRYL----------------------------------V-PTYQIVSGAY--YR--------SSR  285 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~----------------------------------~-~~~~~~~~~~--~~--------~~~  285 (349)
                      .-|.|.|||.+|...-+..                                  + ||+.|.+|-.  ++        ||+
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~   84 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV   84 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence            3589999999998765432                                  1 9999998753  23        999


Q ss_pred             hhHhhhhhhh---heeeeeeeeecccccc
Q psy3181         286 SEQEVCSCKF---LALIKLDILDTYLFSA  311 (349)
Q Consensus       286 ~~~~~~~~~~---~~~~~~~~~~~~~~~~  311 (349)
                       |||...-.+   ...+.+.|+|.-.|+.
T Consensus        85 -WnE~F~~~~~~~~~~l~~~V~d~d~~~~  112 (158)
T cd04015          85 -WNESFHIYCAHYASHVEFTVKDNDVVGA  112 (158)
T ss_pred             -cceEEEEEccCCCCEEEEEEEeCCCcCC
Confidence             999876443   4567888888876653

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=83.42  E-value=7.1  Score=32.39  Aligned_cols=93  Identities=15%  Similarity=0.085  Sum_probs=48.6

Q ss_pred             EEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC--------CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCc
Q psy3181          71 YVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG--------VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE  141 (349)
Q Consensus        71 YV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~--------~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~  141 (349)
                      ||.+.+.. +...|.++.  +.+|.+|-+-.|.|...        ...+.|+++..- ....+.+|.+.+++.+.+....
T Consensus         2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred             EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence            45555543 566777765  45999999988887543        378999999865 3336789999999998775332


Q ss_pred             -ceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181         142 -THEDWFPLSGKQGEDKEGMINLVLSY  167 (349)
Q Consensus       142 -~~~~W~~L~~k~g~~~~GeI~L~L~~  167 (349)
                       .......|.+..++ .-|.|...+..
T Consensus        79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl  104 (107)
T PF11618_consen   79 ERIHGSATLVGVSGE-DFGTLEYWIRL  104 (107)
T ss_dssp             --EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred             ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence             34455566555443 66888877665

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=82.98  E-value=18  Score=33.08  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeec
Q psy3181          80 VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDE  117 (349)
Q Consensus        80 ~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~  117 (349)
                      .++|.+.... .+|.|+|++.+.++..   ..-|.|+++..
T Consensus        54 e~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~   93 (189)
T cd08695          54 EYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHC   93 (189)
T ss_pred             eEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence            5778877754 4999999999999865   46678877763

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=82.94  E-value=2.6  Score=34.79  Aligned_cols=63  Identities=14%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEecee----ec--------CChhhHhhhhhhh------heeeeeeeeecc
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY----YR--------SSRSEQEVCSCKF------LALIKLDILDTY  307 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~----~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~  307 (349)
                      ..|+|.|+|+++.-......     ||+++.++..    ++        ||. |||.....+      ...+.++|+|.-
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~-wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPE-FDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCC-cccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            46999999999986654433     9999998421    32        888 999544332      236888889887


Q ss_pred             cccccCc
Q psy3181         308 LFSANKP  314 (349)
Q Consensus       308 ~~~~~~~  314 (349)
                      .|+.++-
T Consensus        93 ~~~~~~~   99 (124)
T cd08387          93 QFSRDEC   99 (124)
T ss_pred             CCCCCce
Confidence            7766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=82.66  E-value=1.8  Score=35.17  Aligned_cols=86  Identities=20%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             EEEEeeeeeeccc----cCc--CceeEEecee-ec--------CChhh-Hhhhhhhh------heeeeeeeeeccccccc
Q psy3181         255 LNITVVQILSIGR----YLV--PTYQIVSGAY-YR--------SSRSE-QEVCSCKF------LALIKLDILDTYLFSAN  312 (349)
Q Consensus       255 lsiti~~~~~~~~----~~~--~~~~~~~~~~-~~--------~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~  312 (349)
                      |.|+|+++.-...    .|.  ||+.+..|.. ++        ||. | ||...-.+      -..+.++|+|...|+.+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~-W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPV-WNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCc-ccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            5789998886532    232  8999988764 54        788 9 77544333      14788999999888877


Q ss_pred             CccchhhhhhhhhhhhhhhhhccccccccccccCC
Q psy3181         313 KPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLL  347 (349)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (349)
                      +-|-   ++.....+|..-   =++.+++++.||+
T Consensus        80 ~~iG---~~~~~l~~l~~~---~~~~~~~~w~~l~  108 (110)
T cd08688          80 DAIG---KVYIDLNPLLLK---DSVSQISGWFPIY  108 (110)
T ss_pred             CceE---EEEEeHHHhccc---CCccccCCeEEcc
Confidence            5443   333333333321   1344567777765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=81.94  E-value=2.3  Score=35.17  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             EEEEeeeeeeccc---cCc--CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         255 LNITVVQILSIGR---YLV--PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       255 lsiti~~~~~~~~---~~~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      |-|+|+++.-...   .|.  |||.|..+..  ++        ||. |||.....+   ...+.++++|...++.++-|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~-Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPF-WGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCc-ccceEEEeeCCCCCEEEEEEEECCCCCCCCEE
Confidence            6678888774433   333  8999988643  33        899 999776655   35788888998887766554

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=81.86  E-value=5.3  Score=35.79  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCC---CceeEEEEEeCC
Q psy3181          80 VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTM---DELIAWAKIPIP  134 (349)
Q Consensus        80 ~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~sk---dd~LG~v~I~L~  134 (349)
                      .+.|.+... ..+|.|+|+|.+.++..   ..-|.|++++...-.+   ...+|-+.++|-
T Consensus        60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~  119 (184)
T PF14429_consen   60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM  119 (184)
T ss_dssp             -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred             EEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence            456666665 35999999999998754   4778899998543221   157777777776

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=81.85  E-value=1.8  Score=36.01  Aligned_cols=61  Identities=10%  Similarity=0.110  Sum_probs=41.6

Q ss_pred             eEEEEeeeeeeccccC---c--CceeEEecee--------ec--------CChhhHhhhhhhh---heeeeeeeeecccc
Q psy3181         254 RLNITVVQILSIGRYL---V--PTYQIVSGAY--------YR--------SSRSEQEVCSCKF---LALIKLDILDTYLF  309 (349)
Q Consensus       254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~--------~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~  309 (349)
                      .|.|+|+++.-.....   .  ||+.+.++..        ++        ||. ||+.....+   -..+.++|+|...|
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPK-WNEEFFFRVNPREHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCc-EeeEEEEEEcCCCCEEEEEEEECCCC
Confidence            3789999988655442   2  9999887532        22        788 999544333   34578889998888


Q ss_pred             cccCcc
Q psy3181         310 SANKPI  315 (349)
Q Consensus       310 ~~~~~~  315 (349)
                      +.++.|
T Consensus        80 ~~~~~i   85 (133)
T cd04033          80 TRDDFL   85 (133)
T ss_pred             CCCCee
Confidence            766543

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=81.81  E-value=2.6  Score=35.60  Aligned_cols=65  Identities=9%  Similarity=-0.007  Sum_probs=47.3

Q ss_pred             CcceEEEEeeeeeeccccCc--CceeEEece-----eec--------CChhhHhhhhhhh------heeeeeeeeecccc
Q psy3181         251 PVGRLNITVVQILSIGRYLV--PTYQIVSGA-----YYR--------SSRSEQEVCSCKF------LALIKLDILDTYLF  309 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~--~~~~~~~~~-----~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~~~  309 (349)
                      ..|+|.|+|++|.-....|.  ||+++-++.     ...        ||- |||-..-.+      -..+.+.++|---|
T Consensus        12 ~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPv-fnE~f~F~v~~~~l~~~tL~~~V~d~Drf   90 (118)
T cd08677          12 QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQ-WEEELVFPLPEEESLDGTLTLTLRCCDRF   90 (118)
T ss_pred             cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCc-cccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence            67999999999987764443  999998753     122        777 888665444      23467778888889


Q ss_pred             cccCccc
Q psy3181         310 SANKPIP  316 (349)
Q Consensus       310 ~~~~~~~  316 (349)
                      +-++.|-
T Consensus        91 s~~d~IG   97 (118)
T cd08677          91 SRHSTLG   97 (118)
T ss_pred             CCCceEE
Confidence            9888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=81.79  E-value=2.1  Score=35.10  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             EEEEeeeeeeccccCc-----CceeEEece----eec--------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181         255 LNITVVQILSIGRYLV-----PTYQIVSGA----YYR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK  313 (349)
Q Consensus       255 lsiti~~~~~~~~~~~-----~~~~~~~~~----~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  313 (349)
                      |.|+|+++.-.++...     ||+.|..+.    .++        ||. |||...-.+    .+.+.+.++|...| .++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~-Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPV-WNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCc-cceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            7899999987765532     999998752    133        788 998644222    44678889998777 555


Q ss_pred             cc
Q psy3181         314 PI  315 (349)
Q Consensus       314 ~~  315 (349)
                      .|
T Consensus        80 ~i   81 (119)
T cd04036          80 HL   81 (119)
T ss_pred             cc
Confidence            43

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=81.70  E-value=2.5  Score=35.03  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             CcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-.....   .  ||++|.++.      -++        ||. ||+.....+      ...+.++|+|
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~-wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPV-FNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCe-eeeeEEEECCHHHhCCcEEEEEEEe
Confidence            4589999999998665532   2  899988742      122        788 999644333      3578899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|..++.|
T Consensus        91 ~~~~~~~~~l  100 (134)
T cd00276          91 KDSVGRNEVI  100 (134)
T ss_pred             cCCCCCCcee
Confidence            9888766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=81.68  E-value=2.7  Score=35.36  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=45.0

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEece-----e-ec--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA-----Y-YR--------SSRSEQEVCSCKF----L--ALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~-----~-~~--------~~~~~~~~~~~~~----~--~~~~~~~~~  305 (349)
                      +.|+|.|+|+++.-......     ||++|..+.     . ++        ||. |||...-.+    +  ..+.++|+|
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY-YNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc-ccceEEEECCHHHhCCCEEEEEEEe
Confidence            56999999999987655432     899998742     1 22        777 998432222    2  257889999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus        92 ~~~~~~~~~i  101 (136)
T cd08402          92 YDRIGKNDPI  101 (136)
T ss_pred             CCCCCCCcee
Confidence            9988888755

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=81.53  E-value=2.1  Score=35.74  Aligned_cols=64  Identities=9%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             CcceEEEEeeeeeeccccC---c--CceeEEecee------ec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGAY------YR--------SSRSEQEVCSCKF------LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~------~~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-.....   .  ||++|..+..      ++        ||. |||...-.+      -..+.++++|
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPE-FNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCC-cccEEEEECCHHHhCCCEEEEEEEe
Confidence            5699999999998655432   2  9999988531      22        788 998554443      1368889999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      .-.++.++.|
T Consensus        90 ~d~~~~~~~l   99 (133)
T cd08384          90 KDIGKSNDYI   99 (133)
T ss_pred             CCCCCCccEE
Confidence            8777766544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=80.52  E-value=2.9  Score=33.91  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             ceEEEEeeeeeeccccCc-CceeEEecee-ec--------CChhhHhhhhhhh--------heeeeeeeeecccccccCc
Q psy3181         253 GRLNITVVQILSIGRYLV-PTYQIVSGAY-YR--------SSRSEQEVCSCKF--------LALIKLDILDTYLFSANKP  314 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~-~~~~~~~~~~-~~--------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  314 (349)
                      ..|.|+|+++.-..+-.. ||+.+..|.. +.        ||. |||...-.+        -..+.+.|+|...|..++.
T Consensus         4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~-wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~   82 (111)
T cd04011           4 FQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPF-YNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL   82 (111)
T ss_pred             EEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCc-cccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence            468899999887663222 9999999865 43        677 998764332        2468889999888876655


Q ss_pred             c
Q psy3181         315 I  315 (349)
Q Consensus       315 ~  315 (349)
                      |
T Consensus        83 i   83 (111)
T cd04011          83 I   83 (111)
T ss_pred             c
Confidence            4

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=80.49  E-value=2.7  Score=35.62  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=45.2

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEecee---e---c--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY---Y---R--------SSRSEQEVCSCKF----L--ALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~---~---~--------~~~~~~~~~~~~~----~--~~~~~~~~~  305 (349)
                      ..|.|.|+|+++.-......     ||+.+.+...   +   .        ||. |||...-.+    +  ..+.+.++|
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~-wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF-YNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCc-cceeEEEeCCHHHhCCCEEEEEEEe
Confidence            45999999999986544322     9999987332   1   1        787 999544333    2  247788899


Q ss_pred             cccccccCccc
Q psy3181         306 TYLFSANKPIP  316 (349)
Q Consensus       306 ~~~~~~~~~~~  316 (349)
                      .-.++.++.|-
T Consensus        91 ~d~~~~~~~iG  101 (135)
T cd08410          91 HNVKSSNDFIG  101 (135)
T ss_pred             CCCCCCCcEEE
Confidence            88888888774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=80.39  E-value=4.1  Score=34.22  Aligned_cols=64  Identities=11%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEece--e----ec--------CChhhHhhhh-----hhh-heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA--Y----YR--------SSRSEQEVCS-----CKF-LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~--~----~~--------~~~~~~~~~~-----~~~-~~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-......     ||+.+..+.  .    ++        ||. |||...     +.+ -..+.++++|
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~-wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV-FNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc-ccceEEEeCCHHHhCCCEEEEEEEE
Confidence            56999999999996654322     899887621  1    22        787 999543     222 2468899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++-|
T Consensus        92 ~~~~~~~~~l  101 (136)
T cd08405          92 KDRLSRNDLI  101 (136)
T ss_pred             CCCCCCCcEe
Confidence            9888877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-06

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 45  PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP 104
           P G L + +V AK +++   +  MDPYV+L       +++     G  P WN+     + 
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 105 QGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG 140
           +G T +  +I+D+   T D+ +  A IP+    ++G
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-24
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-16
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-15
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-14
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-14
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-14
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-12
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-11
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-09
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-09
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-08
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-06
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-05
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-05
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-05
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-04
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-04
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 94.3 bits (235), Expect = 6e-24
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 38  ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNK 97
            SS    P G L + +V AK +++   +  MDPYV+L       +++     G  P WN+
Sbjct: 1   GSSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60

Query: 98  EVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK 157
                + +G T +  +I+D+   T D+ +  A IP+    ++G      + +     E K
Sbjct: 61  TFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD-EEYK 119

Query: 158 EGMINLVLSYT 168
            G I + LS+ 
Sbjct: 120 -GEIWVALSFK 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 73.8 bits (181), Expect = 6e-16
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 10  NHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMD 69
           +H+ +H +  +    L  Q          S        +L ITV+ AKL +N        
Sbjct: 2   HHHHHHSSGREN---LYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPS 58

Query: 70  PYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWA 129
           PYV + V     +T    +    P+W  +   ++   V+ ++  ++   +   D L+  A
Sbjct: 59  PYVEVTVDGQSKKTEKCNNTNS-PKWK-QPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTA 116

Query: 130 KIPIPS--SVMKGETHEDWFPL---SGKQGEDKEGMINLVLSYTV 169
            + I         +  E    L     K+  +  G +++ L    
Sbjct: 117 ALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)

Query: 36  STASSLIQNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCVYETHTDPSGG 90
           S+ SS     VG L + V++A       L+        DP+  L +G+   +THT     
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAA-----DLLAADFSGKSDPFCLLELGNDRLQTHTVY--- 53

Query: 91  K--FPRWNKEVFCLLPQGVTS-IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF 147
           K   P WN +VF    + +   + + ++DE      + +    IP+  S+  G+ +   +
Sbjct: 54  KNLNPEWN-KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDGQPN--CY 109

Query: 148 PLSGKQGEDKE-GMINLVLSY 167
            L  K  E    G+I L +  
Sbjct: 110 VLKNKDLEQAFKGVIYLEMDL 130

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 36  STASSLIQNPVGRLNITVVQAK----------LVKNYGLVTKMDPYVRLRVGHC-VYETH 84
            + SS      G L + + +A                     +DPY+ + V    V +T 
Sbjct: 18  GSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTS 77

Query: 85  TDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIP---IPSSVMKGE 141
           T       P +N E FC        + L ++ E     D  +A   +    +  +    +
Sbjct: 78  TKQ-KTNKPTYN-EEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135

Query: 142 THEDWFPLSGKQGEDKEGMINLVLSYT 168
           T E W  L      + EG + +V++ T
Sbjct: 136 TFEGWVDL------EPEGKVFVVITLT 156

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL---- 102
           G L + V  A  +       K DP V +       +T    +    P WN E+       
Sbjct: 7   GMLRVIVESASNIPK-TKFGKPDPIVSVIFKDEKKKTKKVDN-ELNPVWN-EILEFDLRG 63

Query: 103 LPQGVTS-IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF---PLSGKQGEDKE 158
           +P   +S + + + D  +   ++LI  A + +   +   ++    +    L  ++G+D  
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTGDQSRSLPYKLISLLNEKGQDTG 122

Query: 159 GMINLVLSYT 168
             I+LV+ Y 
Sbjct: 123 ATIDLVIGYD 132

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 23/138 (16%)

Query: 45  PVGRLNITVVQAK-----------LVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKF 92
             G L I + +A             V        +DPY+ L V    + +T T       
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS- 62

Query: 93  PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE--THEDWFPLS 150
           P W+ + F         I L ++ +     D+ +A   I     +++      EDW  L 
Sbjct: 63  PAWH-DEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQF-EELLQNGSRHFEDWIDL- 119

Query: 151 GKQGEDKEGMINLVLSYT 168
                + EG + +++  +
Sbjct: 120 -----EPEGKVYVIIDLS 132

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 16/146 (10%)

Query: 36  STASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
            +          +++ITVV A+ ++        DPYV ++VG     T T   G   P W
Sbjct: 6   QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVW 64

Query: 96  NKEVFCLLPQGVTSIYLEIYDE-----------CSFTMDELIAWAKIPIPSSVMKGETHE 144
            +            I + + DE                D+ +    I +  ++       
Sbjct: 65  EENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV-RTLSGEMDV- 122

Query: 145 DWFPLSGKQGEDKE-GMINLVLSYTV 169
            W+ L  +  +    G I L +S  +
Sbjct: 123 -WYNLDKRTDKSAVSGAIRLHISVEI 147

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 47  GRLNITVVQAK-LVKNYG--LVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVF 100
            +  + V++A  + K     ++   DPYV L +         T    +    P WN E F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWN-ETF 60

Query: 101 CLLPQGVTS--IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKE 158
             +        + + + D   + MDE +  A   + SS+  GE  E  F  +       E
Sbjct: 61  EFILDPNQENVLEITLMDAN-YVMDETLGTATFTV-SSMKVGEKKEVPFIFNQV----TE 114

Query: 159 GMINLVLSYTVS 170
            ++ + L    S
Sbjct: 115 MVLEMSLEVASS 126

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 29/147 (19%)

Query: 41  LIQNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCV------YETHTDPSG 89
           L  +    + + V+        GL  K      DPYVR+ +   +       +T T    
Sbjct: 2   LHNDDTRVVRVKVIAGI-----GLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-- 54

Query: 90  GK--FPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED-- 145
            K   P+WN+E+   +      I  E++DE   T D+ +    +P+   +       +  
Sbjct: 55  -KSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPL-YPLPTENPRMERP 112

Query: 146 ----WFPLSGKQGEDKE-GMINLVLSY 167
                F L  +  + +  G + L ++Y
Sbjct: 113 YTFKDFVLHPRSHKSRVKGYLRLKMTY 139

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 29/145 (20%)

Query: 43  QNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGH------CVYETHTDPSGGK 91
           +     + + V+        GL  K      DPYVR+ +           +T T     K
Sbjct: 16  EENSRIVRVRVIAGI-----GLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK---K 67

Query: 92  --FPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED---- 145
              P+WN+E+   +      +  E++DE   T D+ +    +P+   +       +    
Sbjct: 68  SLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL-YPLPTENPRLERPYT 126

Query: 146 --WFPLSGKQGEDKE-GMINLVLSY 167
              F L  +  + +  G + L ++Y
Sbjct: 127 FKDFVLHPRSHKSRVKGYLRLKMTY 151

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL-LPQ 105
             L + V +AK     G   K + YV L+V +    T      G  P W  + F   + +
Sbjct: 5   SLLCVGVKKAKFD---GAQEKFNTYVTLKVQNVKSTTIA--VRGSQPSWE-QDFMFEINR 58

Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG--ETHEDWFPLSGKQGEDKEGMINL 163
               + +E++++     D ++    IP+  ++ +   E   +W  L   Q    +  I  
Sbjct: 59  LDLGLTVEVWNKGLIW-DTMVGTVWIPL-RTIRQSNEEGPGEWLTLD-SQAIMADSEICG 115

Query: 164 VLSYT 168
               T
Sbjct: 116 TKDPT 120

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG 106
             L + V +AK         K + YV L+V +    T      G  P W ++    + + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIA--VRGSQPSWEQDFMFEINRL 68

Query: 107 VTSIYLEIYDECSFTMDELIAWAKIPIPS-SVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
              + +E++++     D ++    IP+ +      E   +W  L   Q    +  I    
Sbjct: 69  DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD-SQAIMADSEICGTK 126

Query: 166 SYT 168
             T
Sbjct: 127 DPT 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 26/136 (19%)

Query: 48  RLNITVVQAKLVKNYGLVTKM------DPYVRLRVGHC--VYETHTDPSGGK--FPRWNK 97
           ++ +TV+ AK      L  K       DP+ ++ V      + T T         P+WN 
Sbjct: 6   KIRLTVLCAK-----NLA-KKDFFRLPDPFAKIVVDGSGQCHSTDTVK---NTLDPKWN- 55

Query: 98  EVFCLLPQGVTSIYLEIYDECSFTMDELIAW-AKIPIPSSVMKGETHEDWFPL-----SG 151
           + + L      SI + +++       +   +   + + S+ +       +  L     + 
Sbjct: 56  QHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115

Query: 152 KQGEDKEGMINLVLSY 167
              +   G I + L  
Sbjct: 116 SDTDAVRGQIVVSLQT 131

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 11/112 (9%)

Query: 43  QNPVGRLNITVVQAKLVKNYG---LVTKMDPYVRLRVGHCV---YETHTDPSGGKFPRWN 96
                +  + V++A  V       ++   DPYV L +         T    +    P WN
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWN 72

Query: 97  KEVFC--LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
            E F   L P     + + + D      DE +  A   + S  +  +    +
Sbjct: 73  -ETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 47  GRLNITVVQAKLVKNYGLVTKM------DPYVRLRV-----GHCVYETHTDPSGGK--FP 93
             L + V  AK      LV  M      DPYV+L++          +T T         P
Sbjct: 31  EVLIVVVRDAK-----NLV-PMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK---CSLNP 81

Query: 94  RWNKEVFCLLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
            WN+     L +      L +  +D    + ++ +      I S + K    + WF L  
Sbjct: 82  EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGV-DGWFKLLS 139

Query: 152 KQGEDKEGM 160
           ++  +   +
Sbjct: 140 QEEGEYFNV 148

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRV------GHCVYETHTDPSGGKFPRWNKEVF 100
            +  I ++Q   +            +R+ V        C++ T           +N EVF
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFN-EVF 100

Query: 101 CL-LPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
            + +        ++ +++       ++E +  A+I +      GE    W+ L
Sbjct: 101 WVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFC-- 101
            +L + ++QA  +    +    DPYV++ +       +ET         P +N E F   
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFN-EQFTFK 76

Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
           +    +    L +  YD   F+  ++I   K+P+ ++V  G   E+W  L   + E++E 
Sbjct: 77  VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM-NTVDFGHVTEEWRDLQSAEKEEQEK 135

Query: 160 MINLVLS 166
           + ++  S
Sbjct: 136 LGDICFS 142

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 28/129 (21%)

Query: 47  GRLNITVVQAKLVKNYGLVTK-----MDPYVRLRV---GHCVYETHTDPSGGKF------ 92
           G L I ++QA+      LV +      DP+V++ +      V       +  K       
Sbjct: 18  GNLIIHILQAR-----NLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72

Query: 93  ----PRWNKE-VFCLLPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHE 144
               P WN+  ++  +        ++ + ++D   F+ ++ +    I + SS    +   
Sbjct: 73  KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL-SSTSHLDNTP 131

Query: 145 DWFPLSGKQ 153
            W+PL  + 
Sbjct: 132 RWYPLKEQT 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.91
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.89
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.88
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.88
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.88
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.87
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.83
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.83
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.83
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.81
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.8
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.8
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.8
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.8
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.8
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.79
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.79
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.79
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.78
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.78
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.77
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.77
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.77
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.76
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.76
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.76
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.76
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.76
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.76
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.76
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.76
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.74
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.72
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.69
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.69
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.67
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.63
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.63
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.54
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.53
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.51
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.37
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.33
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.3
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.3
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.97
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.95
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	94.88
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	93.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	93.75
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	93.19
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	92.71
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	92.58
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	92.45
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	91.66
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	91.04
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.0
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	90.94
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	89.51
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	89.38
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	89.25
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.66
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	87.89
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	87.61
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	87.57
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	87.37
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	87.17
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	87.14
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	87.13
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	86.38
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.32
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	86.3
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	85.9
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	85.8
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	85.03
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	84.15
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	83.84
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	82.35
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	81.79
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	81.28
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	80.91
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	80.49

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.91  E-value=4.9e-24  Score=179.24  Aligned_cols=132  Identities=27%  Similarity=0.399  Sum_probs=116.9

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecC
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDEC  118 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d  118 (349)
                      |.....+.|.|.|+|++|++|+..+.+|.+||||++.+++..++|+++++++.||+|||+|.|.+......|.|+|||+|
T Consensus         2 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~   81 (136)
T 1wfj_A            2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD   81 (136)
T ss_dssp             CCCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSS
T ss_pred             CCCCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECC
Confidence            34557789999999999999999999999999999999998999999884467999999999999887789999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      .+++|++||++.|+|.++...+...+.||+|. + ..+..|+|+|+++|.|...
T Consensus        82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~-~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           82 VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-K-DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-E-TTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCceEEEEEEEHHHhccCCCCCcEEEEee-c-CCccCEEEEEEEEEEeCCC
Confidence            99999999999999997656666678999997 3 3357899999999998765

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.89  E-value=2.1e-22  Score=169.02  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=112.8

Q ss_pred             cccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeec
Q psy3181          38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDE  117 (349)
Q Consensus        38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~  117 (349)
                      +|+.+....|.|.|+|++|++|+..+..|.+||||++.+++..++|+++++ +.||.|||+|.|.+.+....|.|+|||+
T Consensus         4 ~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~i~V~d~   82 (133)
T 2ep6_A            4 GSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTVFDE   82 (133)
T ss_dssp             CCCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEEEEE
T ss_pred             ccccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecC-CCCCccccEEEEEecCCCCEEEEEEEEC
Confidence            567889999999999999999999999999999999999999999999887 5699999999999987778999999999


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEEE
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSYT  168 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~~  168 (349)
                      |.+++|++||++.++|.++ ..+.  ..|++|..+.+ ....|+|+|+++|.
T Consensus        83 d~~~~~~~lG~~~i~l~~l-~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSI-RDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGC-CSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEEHHHc-cCCC--ceEEEeecCCCCCccceEEEEEEEEE
Confidence            9998999999999999964 4443  58999986432 35789999999985

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=5.7e-22  Score=167.37  Aligned_cols=126  Identities=20%  Similarity=0.211  Sum_probs=109.0

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecCC
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDECS  119 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d~  119 (349)
                      ...|.|.|+|++|++|+..+. |.+||||++.+++.+++|+++++ +.||+|||+|.|.+..    ....|.|+|||+|.
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecC-CCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            567899999999999999998 99999999999999999999877 5699999999999864    35889999999999


Q ss_pred             CCCCceeEEEEEeCCccccCCcceeeEEE---ccCCCCCCcceEEEEEEEEEEccc
Q psy3181         120 FTMDELIAWAKIPIPSSVMKGETHEDWFP---LSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~---L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      +++|++||++.++|.+ +..+...+.|+.   |....+....|+|+|+++|.|...
T Consensus        82 ~~~~~~lG~~~i~l~~-l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKD-LTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGG-TCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCceEEEEEEEHHH-hccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            9999999999999995 455555788988   655445556799999999987544

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.88  E-value=8.7e-22  Score=167.98  Aligned_cols=122  Identities=21%  Similarity=0.303  Sum_probs=106.1

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC--
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF--  120 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~--  120 (349)
                      ....|.|.|+|++|++|+..|.+|.+||||++.+++..++|++++++ .||.|||+|.|.+......|.|+|||+|..  
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN-LNPVWEENFHFECHNSSDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSC-SSCEEEEEEEEEECSTTCEEEEEEEECCCSHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCC-CCCCcccEEEEEecCCCCEEEEEEEECCCCcc
Confidence            45679999999999999999999999999999999999999998874 699999999999987778999999999986  


Q ss_pred             ---------CCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEEE
Q psy3181         121 ---------TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSYT  168 (349)
Q Consensus       121 ---------skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~~  168 (349)
                               ++|++||++.++|.++   ....+.||+|..+.+ ....|+|+|+++|.
T Consensus        92 ~~~~~~~~~~~~~~lG~~~i~l~~l---~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           92 SRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHTTTSSCSSEEEEEEEEEGGGC---CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccccCCCCccEEEEEEEHHHC---cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                     7899999999999964   234679999985433 34679999999985

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.88  E-value=9.2e-22  Score=168.72  Aligned_cols=128  Identities=18%  Similarity=0.305  Sum_probs=102.8

Q ss_pred             CCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEE
Q psy3181          41 LIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEI  114 (349)
Q Consensus        41 ~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V  114 (349)
                      ......|.|.|+|++|++|+.++.+|.+||||++.++.      ..++|+++++ +.||+|||+|.|.+......|.|+|
T Consensus        14 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~l~~~V   92 (153)
T 3b7y_A           14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQQHRLLFEV   92 (153)
T ss_dssp             SCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred             cCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCCCCEEEEEE
Confidence            34677899999999999999999999999999999873      5789999887 5699999999999987778999999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccCCc-----ceeeEEEccCCC-CCCcceEEEEEEEEEE
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMKGE-----THEDWFPLSGKQ-GEDKEGMINLVLSYTV  169 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~g~-----~~~~W~~L~~k~-g~~~~GeI~L~L~~~p  169 (349)
                      ||+|.+++|++||++.|+|.++.....     ....||+|..+. ..+..|+|+|+++|.|
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             EECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            999999999999999999997554432     135999997643 2356799999999976

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.87  E-value=1.4e-21  Score=172.06  Aligned_cols=127  Identities=19%  Similarity=0.331  Sum_probs=100.9

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEee
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYD  116 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D  116 (349)
                      ....|.|.|+|++|++|+.++.+|++||||++.++.      ..++|+++++ +.||.|||+|.|.+......|.|+|||
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            456899999999999999999999999999999874      6789999886 569999999999998777899999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcce-----eeEEEccCCC-CCCcceEEEEEEEEEEc
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETH-----EDWFPLSGKQ-GEDKEGMINLVLSYTVS  170 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~-----~~W~~L~~k~-g~~~~GeI~L~L~~~p~  170 (349)
                      ++.+++|++||.+.|+|.++...+...     ..||+|..+. +.+..|+|+|+++|.|.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            999999999999999999765543321     2899998643 24568999999999987

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.85  E-value=4.1e-21  Score=162.11  Aligned_cols=119  Identities=24%  Similarity=0.433  Sum_probs=100.8

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCeEEE
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTK-----------MDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVTSIY  111 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~-----------sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~  111 (349)
                      ...|.|.|+|++|++|+++|.+++           +||||++.+++.. .+|++.++ +.||+|||+|.|.+... ..|.
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~-~~L~   80 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE-CEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecCC-CEEE
Confidence            457999999999999999886554           9999999998765 57777665 56999999999998765 8899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCC-cceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQGEDKEGMINLVLSYTVS  170 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g-~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~  170 (349)
                      |+|||+|.+++|++||.+.+++.++...+ ...+.|+.|.+      .|+|+|+++|.+.
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~  134 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC------CeEEEEEEEEEec
Confidence            99999999999999999999999765543 33589999874      4999999999764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=5.7e-21  Score=167.12  Aligned_cols=121  Identities=21%  Similarity=0.313  Sum_probs=101.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCe
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGL----------VTKMDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVT  108 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~----------~G~sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~  108 (349)
                      ..+....|.|.|+|++|++|+++|.          .|.+||||+|.+++.. .+|+++++ +.||+|||+|.|.+.+ ..
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~-~~   99 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD-GG   99 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE-EC
T ss_pred             chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC-CC
Confidence            4556889999999999999998883          3679999999998765 68998776 5699999999999865 46


Q ss_pred             EEEEEEeecCCCCCCceeEEEEEeCCccccC---CcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMK---GETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       109 ~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~---g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      .|.|+|||+|.+++|++||.+.|+|.++...   +...+.||+|.+      .|.|+|+++|.
T Consensus       100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~  156 (157)
T 2fk9_A          100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC------CcEEEEEEEEE
Confidence            8999999999999999999999999975543   356789999974      59999999874

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.83  E-value=6.3e-20  Score=174.10  Aligned_cols=133  Identities=16%  Similarity=0.185  Sum_probs=109.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l---g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+....+.|.|+|++|++|+.+|.+|.+||||++.+   +...++|+++++ +.||+|||+|.|.+...   ...|.|+
T Consensus        13 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~   91 (296)
T 1dqv_A           13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFS   91 (296)
T ss_dssp             EECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEE
T ss_pred             EEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEE
Confidence            6677889999999999999999999999999999999   567889999876 56999999999998643   3589999


Q ss_pred             EeecCCCCCCceeEEEEEe-CCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEEEccce
Q psy3181         114 IYDECSFTMDELIAWAKIP-IPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYTVSFFF  173 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~-L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~p~~~~  173 (349)
                      |||+|.+++|++||++.++ +.+....+.....|+.|.... .....|+|++.+.|.|....
T Consensus        92 V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~  153 (296)
T 1dqv_A           92 VYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGL  153 (296)
T ss_dssp             EEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTE
T ss_pred             EEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccce
Confidence            9999999999999999996 443443344467899997543 23456999999999876543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=3e-20  Score=153.85  Aligned_cols=116  Identities=21%  Similarity=0.287  Sum_probs=98.1

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEec-cCCeEEEEEEeecC
Q psy3181          46 VGRLNITVVQAKLVKNY---GLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLP-QGVTSIYLEIYDEC  118 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~---d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~-~~~~~L~I~V~D~d  118 (349)
                      .|.|.|+|++|++|+.+   +..|.+||||++.+++   ..++|+++++ +.||+|||+|.|.+. .....|.|+|||+|
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            58999999999999984   6679999999999984   7899999887 569999999999995 44688999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      .++ |++||.+.++|.+ +..+.....|++|...    ..|+|+|++...
T Consensus        81 ~~~-~~~iG~~~i~l~~-l~~~~~~~~~~~L~~~----~~g~i~~~le~~  124 (126)
T 1rlw_A           81 YVM-DETLGTATFTVSS-MKVGEKKEVPFIFNQV----TEMVLEMSLEVA  124 (126)
T ss_dssp             SSC-CEEEEEEEEEGGG-SCTTCEEEEEEEETTT----EEEEEEEEEECC
T ss_pred             CCC-CceeEEEEEEHHH-ccCCCcEEEEEEcCCC----ceEEEEEEEEeC
Confidence            885 9999999999995 5677778899999752    357777766543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.83  E-value=6.8e-20  Score=153.49  Aligned_cols=121  Identities=16%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH--CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM  122 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk  122 (349)
                      ....|.|+|++|++|+.+|.+|.+||||++.++.  ..++|+++++ +.||+|||+|.|.+.... .|.|+|||+|.+++
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK   80 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence            4568999999999999999999999999999974  7899999876 569999999999987654 49999999999876


Q ss_pred             ---CceeEEEEEeCCccccCCcceeeEEEccCCCC---CCcceEEEEEEEE
Q psy3181         123 ---DELIAWAKIPIPSSVMKGETHEDWFPLSGKQG---EDKEGMINLVLSY  167 (349)
Q Consensus       123 ---dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g---~~~~GeI~L~L~~  167 (349)
                         |++||++.+++.++...+....+|++|..+.+   ....|+|+|++++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               89999999998854343333458999975422   3458999998874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=5.1e-20  Score=162.99  Aligned_cols=153  Identities=20%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             CCcchhhhHHHHHHHHhhhhcccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCC
Q psy3181          11 HNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGG   90 (349)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~   90 (349)
                      |.+.+.|++..|+-....-..+      +.......++|.|+|++|++|+..+..+.+||||+|.+++..++|+++++ +
T Consensus         6 ~~~~~~~~~~~~~m~~~~~~~~------~~~~~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~-t   78 (173)
T 2nq3_A            6 HHSSGRENLYFQGMSDSGSQLG------SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-T   78 (173)
T ss_dssp             -------------------------------CCSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSS-C
T ss_pred             ccccccccccccccCcCCCCCc------cccccCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCC-C
Confidence            3455667777655544442222      22334568899999999999995544556999999999999999999886 5


Q ss_pred             CCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccC--Ccc--eeeEEEccCCC-CCCcceEEEEEE
Q psy3181          91 KFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMK--GET--HEDWFPLSGKQ-GEDKEGMINLVL  165 (349)
Q Consensus        91 ~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~--g~~--~~~W~~L~~k~-g~~~~GeI~L~L  165 (349)
                      .||+|||+|.|.+.. ...|.|+|||+|.+++|++||++.++|.++...  +..  ...|++|..+. .....|+|.+.+
T Consensus        79 lnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l  157 (173)
T 2nq3_A           79 NSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL  157 (173)
T ss_dssp             SSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEE
T ss_pred             CCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEE
Confidence            699999999999854 789999999999999999999999999965532  221  26799997542 235679999999


Q ss_pred             EEEEcc
Q psy3181         166 SYTVSF  171 (349)
Q Consensus       166 ~~~p~~  171 (349)
                      .|.+.+
T Consensus       158 ~~l~~~  163 (173)
T 2nq3_A          158 DGLQLE  163 (173)
T ss_dssp             ESEECC
T ss_pred             eeeecc
Confidence            988654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=3.3e-19  Score=167.08  Aligned_cols=160  Identities=21%  Similarity=0.316  Sum_probs=124.5

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+....|.|.|+|++|++|+.+|..|.+||||++.++   ...++|+++++ +.||+|||+|.|.+...   ...|.|+
T Consensus        12 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~   90 (284)
T 2r83_A           12 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMA   90 (284)
T ss_dssp             EEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEE
T ss_pred             EEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEE
Confidence            66778899999999999999999999999999999995   35788999887 56999999999998653   4789999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC--CCcceEEEEEEEEEEccceeeeeeecCceeeeeeccc
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG--EDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHP  191 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g--~~~~GeI~L~L~~~p~~~~~~~~~~~~~~y~~~t~~~  191 (349)
                      |||+|.+++|++||++.++|.+ +..+...+.|++|....+  ....|+|++.+.|.|....+....      +  .+..
T Consensus        91 V~d~d~~~~~~~lG~~~i~l~~-l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v------~--~a~~  161 (284)
T 2r83_A           91 VYDFDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVI------L--EAKN  161 (284)
T ss_dssp             EEECCSSSCCCEEEEEEEEGGG-CCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEE------E--EEES
T ss_pred             EEECCCCCCCceeEEEEEcchh-cccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEE------E--EeEC
Confidence            9999999999999999999995 444556789999976432  345799999999988665432111      1  1111


Q ss_pred             cchhhhccCCCCCccccCCC
Q psy3181         192 LYAAKVFLGALPSDFLRPNN  211 (349)
Q Consensus       192 ~~~~k~~ig~lPd~flrv~~  211 (349)
                      +  +.....+.+|+|+++..
T Consensus       162 L--~~~d~~~~~dpyv~v~~  179 (284)
T 2r83_A          162 L--KKMDVGGLSDPYVKIHL  179 (284)
T ss_dssp             C--CCCSTTSCCCEEEEEEE
T ss_pred             C--CCcCCCCCcCeEEEEEE
Confidence            1  11123456889998875

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.80  E-value=6.6e-20  Score=159.41  Aligned_cols=117  Identities=14%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             ccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccceEEEEEecc
Q psy3181          32 AGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNKEVFCLLPQ  105 (349)
Q Consensus        32 ~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnEtF~F~V~~  105 (349)
                      .|+..++ +.+....+.|.|+|++|+||+.+|.+|.+||||++.+..      .+++|+++++ +.||+|||+|.|.+..
T Consensus        29 ~G~l~~s-l~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           29 ATRIQIA-LKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             CEEEEEE-EEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCH
T ss_pred             cEEEEEE-EEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCH
Confidence            3544333 777888999999999999999999999999999999864      2789999887 5699999999999875


Q ss_pred             C---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         106 G---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       106 ~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .   ...|.|+|||+|.++++++||++.++|.++...+....+||+|.
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            3   47899999999999999999999999996544456688999985

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=1.7e-19  Score=149.85  Aligned_cols=108  Identities=16%  Similarity=0.272  Sum_probs=89.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEe-cc---CCeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLL-PQ---GVTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V-~~---~~~~L  110 (349)
                      +.+....|.|.|+|++|++|+.++.+|.+||||++.+     +....+|+++++ +.||+|||+|.|.+ ..   ....|
T Consensus        11 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l   89 (129)
T 2bwq_A           11 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERML   89 (129)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEE
T ss_pred             EEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeE
Confidence            6667788999999999999999999999999999998     457899999887 56999999999995 32   24789


Q ss_pred             EEEEeecCCCCC--CceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         111 YLEIYDECSFTM--DELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       111 ~I~V~D~d~~sk--dd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      .|+|||+|.+++  +++||++.++|.++...+  .++||+|+
T Consensus        90 ~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~Lq  129 (129)
T 2bwq_A           90 EITLWDQARVREEESEFLGEILIELETALLDD--EPHWYKLQ  129 (129)
T ss_dssp             EEEEEEC-------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred             EEEEEECCcCcCcCCceeEEEEEEccccCCCc--CCccEECc
Confidence            999999999987  999999999999766544  78999984

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.80  E-value=1.3e-19  Score=153.55  Aligned_cols=119  Identities=22%  Similarity=0.327  Sum_probs=101.0

Q ss_pred             hcccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEEEecCCCCCCCccceEEEEEeccC
Q psy3181          30 ELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCLLPQG  106 (349)
Q Consensus        30 ~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l---g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~  106 (349)
                      .-.|+..+ ++.+....+.|.|+|++|++|+..+..|.+||||++.+   +...++|+++++ +.||+|||+|.|.+...
T Consensus        18 ~~~G~l~~-~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~   95 (143)
T 3f04_A           18 EKLGKLQY-SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCEEEE-EEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHH
T ss_pred             cCeEEEEE-EEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHh
Confidence            33454333 36778899999999999999999999999999999999   456899999887 46999999999998643


Q ss_pred             ---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         107 ---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       107 ---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                         ...|.|+|||+|.+++|++||++.++|.+ +..+...+.||+|.+
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGG-CCTTSCEEEEEECBC
T ss_pred             hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHH-ccCCCCcceEEECcC
Confidence               47899999999999999999999999995 566666889999974

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=1e-19  Score=153.31  Aligned_cols=114  Identities=15%  Similarity=0.256  Sum_probs=96.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEe-ccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLL-PQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V-~~~---~~~L  110 (349)
                      +.+....+.|.|+|++|++|+.++.+|.+||||++.+     +...++|+++++ +.||+|||+|.|.+ ...   ...|
T Consensus        14 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~l   92 (141)
T 1v27_A           14 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERML   92 (141)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGGTCEE
T ss_pred             EEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHhcCCEE
Confidence            5667778999999999999999999999999999998     356889999887 56999999999994 322   4789


Q ss_pred             EEEEeecCCCCC--CceeEEEEEeCCccccCCcceeeEEEccCCCCCC
Q psy3181         111 YLEIYDECSFTM--DELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED  156 (349)
Q Consensus       111 ~I~V~D~d~~sk--dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~  156 (349)
                      .|+|||++.+++  +++||++.|+|.++...+  .++||+|.++...+
T Consensus        93 ~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~~~~~g~  138 (141)
T 1v27_A           93 EITLWDQARVREEESEFLGEILIELETALLDD--EPHWYKLQTHDSGP  138 (141)
T ss_dssp             EEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS--EEEEEECBCCSSCC
T ss_pred             EEEEEECCCCcCCCCceEEEEEEEccccCCCC--CCceEECcccccCC
Confidence            999999999987  999999999999765543  78999998754433

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=2.9e-19  Score=153.45  Aligned_cols=120  Identities=21%  Similarity=0.324  Sum_probs=101.2

Q ss_pred             hhcccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEEEecCCCCCCCccceEEEEEecc
Q psy3181          29 NELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCLLPQ  105 (349)
Q Consensus        29 ~~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l---g~~~~kTkvvk~~~~nP~WnEtF~F~V~~  105 (349)
                      ....|+..++ +.+....+.|.|+|++|++|+..+.+|.+||||++.+   +...++|+++++ +.||+|||+|.|.+..
T Consensus        25 ~~~~G~l~~~-l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~  102 (152)
T 1rsy_A           25 EEKLGKLQYS-LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPY  102 (152)
T ss_dssp             -CCCCEEEEE-EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCH
T ss_pred             CCCceEEEEE-EEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecH
Confidence            3444544333 6678889999999999999999999999999999999   356889999887 5699999999999864


Q ss_pred             C---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         106 G---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       106 ~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      .   ...|.|+|||+|.+++|++||++.|+|.+ +..+...++||+|.+
T Consensus       103 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          103 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQS  150 (152)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGG-CCCSSCEEEEEECBC
T ss_pred             HHcCCCEEEEEEEECCCCCCCcEEEEEEEEchh-ccCCCCcceEEECCC
Confidence            3   58899999999999999999999999995 555666889999974

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.79  E-value=3.9e-19  Score=150.02  Aligned_cols=110  Identities=15%  Similarity=0.224  Sum_probs=94.5

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEE-ecc---CCeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCL-LPQ---GVTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~-V~~---~~~~L  110 (349)
                      +++....|.|.|+|++|++|+. +..|.+||||++.+     .....+|+++++ +.||+|||+|.|. ++.   ....|
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l~~~~L   90 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETLRQREL   90 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHHTTCEE
T ss_pred             EEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHhCcCEE
Confidence            5666778999999999999997 77899999999998     456889999887 5699999999999 764   35799


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      .|+|||+|.++++++||++.++|.+ +..+...+.||+|.++
T Consensus        91 ~~~V~d~d~~~~~~~lG~~~i~l~~-l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           91 QLSVLSAESLRENFFLGGITLPLKD-FNLSKETVKWYQLTAA  131 (134)
T ss_dssp             EEEEEECCSSSCCEEEEEEEEEGGG-SCTTSCEEEEEECBC-
T ss_pred             EEEEEECCCCCCCcEEEEEEEEhhh-ccCCCCcceeEECCCc
Confidence            9999999999999999999999995 4555568899999854

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=5.5e-19  Score=149.53  Aligned_cols=111  Identities=19%  Similarity=0.280  Sum_probs=96.3

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEe-cc---CCeEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLL-PQ---GVTSIYL  112 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V-~~---~~~~L~I  112 (349)
                      +.+....+.|.|+|++|++|+.++..|.+||||++.+.   ...++|+++++ +.||+|||+|.|.+ +.   ....|.|
T Consensus        19 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i   97 (141)
T 2d8k_A           19 VGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKVVQRILYL   97 (141)
T ss_dssp             EEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHHTTSEEEE
T ss_pred             EEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHcccCEEEE
Confidence            66777899999999999999999999999999999994   46889999876 56999999999985 32   2578999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +|||+|.++++++||++.|+|.+ +..+...+.||+|.++
T Consensus        98 ~V~d~d~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A           98 QVLDYDRFSRNDPIGEVSIPLNK-VDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             EEEECCSSSSCEEEEEEEEETTT-SCTTSCEEEEECCEEC
T ss_pred             EEEECCCCCCCcEEEEEEEEhhh-hcCCCCccEEEECcCC
Confidence            99999999999999999999995 4555568899999865

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.79  E-value=2.5e-19  Score=154.22  Aligned_cols=120  Identities=18%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             hcccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEec
Q psy3181          30 ELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLP  104 (349)
Q Consensus        30 ~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~  104 (349)
                      ..+|...++ +.+....|.|.|+|++|++|+..+ .|.+||||++.+.     ....+|+++++ +.||+|||+|.|.+.
T Consensus        11 ~~~G~~~ls-L~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~   87 (153)
T 3fbk_A           11 KVQGAGQLR-LSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQ   87 (153)
T ss_dssp             --CCCCEEE-EEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECC
T ss_pred             CCCCEEEEE-EEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecc
Confidence            344544333 888999999999999999999999 6999999999983     45789999886 559999999999984


Q ss_pred             --cCCeEEEEEEeecCCCCC-CceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         105 --QGVTSIYLEIYDECSFTM-DELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       105 --~~~~~L~I~V~D~d~~sk-dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                        .....|.|+|||+|.+++ |++||++.++|.++...+.....||+|.++
T Consensus        88 ~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A           88 EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             GGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             cHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence              334669999999999887 999999999999655435668899999865

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.78  E-value=1.4e-19  Score=154.60  Aligned_cols=112  Identities=14%  Similarity=0.225  Sum_probs=95.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      +.+....|.|.|+|++|++|+..+ ..|.+||||++.+.     ....+|+++++ +.||+|||+|.|.+...   ...|
T Consensus        16 l~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~L   94 (148)
T 3fdw_A           16 LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLLAQRTL   94 (148)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTGGGCEE
T ss_pred             EEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHhCceEE
Confidence            667788999999999999999888 57999999999986     34789999876 56999999999998764   4679


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCC
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ  153 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~  153 (349)
                      .|+|||+|.+++|++||++.++|.++ ..+...+.||+|.++.
T Consensus        95 ~~~V~d~d~~~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           95 QFSVWHHGRFGRNTFLGEAEIQMDSW-KLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEHHHH-HHHCCSEEEEECBCC-
T ss_pred             EEEEEECCCCcCCcEEEEEEEEcccc-cccCCccceEECcCcc
Confidence            99999999999999999999999954 4344577999998764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.78  E-value=6.9e-19  Score=148.90  Aligned_cols=118  Identities=21%  Similarity=0.270  Sum_probs=99.0

Q ss_pred             cccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEE-ec
Q psy3181          31 LAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCL-LP  104 (349)
Q Consensus        31 ~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~-V~  104 (349)
                      ..|...+ ++.+....+.|.|+|++|++|+.++..|.+||||++.++.     ..++|+++++ +.||+|||+|.|. +.
T Consensus        14 ~~G~l~~-~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~   91 (142)
T 2chd_A           14 TLGALEF-SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGIT   91 (142)
T ss_dssp             CCCEEEE-EEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCC
T ss_pred             ccceEEE-EEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccC
Confidence            3454333 3667788999999999999999999999999999999964     6899999887 5699999999998 65


Q ss_pred             cC---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         105 QG---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       105 ~~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      ..   ...|.|+|||+|.+++|++||++.|+|.+ +..+.....|++|..
T Consensus        92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~-l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK-LKANQRKNFNICLER  140 (142)
T ss_dssp             HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGG-CCTTCCEEEEEECBC
T ss_pred             HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHH-cCCCCccEEEEeccc
Confidence            43   37899999999999999999999999995 555666788888863

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=1.6e-18  Score=146.17  Aligned_cols=112  Identities=12%  Similarity=0.107  Sum_probs=94.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|++|+.+|.+ |.+||||++.+.   ...++|+++++ +.||+|||+|.|. ++..   ...|.
T Consensus        15 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~   93 (138)
T 1ugk_A           15 LEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALH   93 (138)
T ss_dssp             EEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEE
T ss_pred             EEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEE
Confidence            56677889999999999999999986 899999999985   36899999886 5699999999996 6543   46899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |+|||+|.+++|++||++.++|.++.........|++|..+
T Consensus        94 i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           94 FTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             EEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            99999999999999999999999755443435678999754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.77  E-value=2.1e-18  Score=144.44  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCC---eEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGV---TSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~---~~L~  111 (349)
                      +.+....|.|.|+|++|++|+..+..|.+||||++.++.     ...+|++++++ .||+|||+|.|.+....   ..|.
T Consensus         9 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~l~~~~l~   87 (138)
T 3n5a_A            9 LCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN-LNPIFNESFAFDIPTEKLRETTII   87 (138)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSC-SSCEEEEEEEEECCGGGGGGEEEE
T ss_pred             EEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCC-CCCcCcceEEEECChhhcCceEEE
Confidence            566778899999999999999999999999999999863     47788888774 69999999999987653   7899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPS  135 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e  135 (349)
                      |+|||+|.+++|++||++.++|.+
T Consensus        88 ~~V~d~~~~~~~~~lG~~~i~l~~  111 (138)
T 3n5a_A           88 ITVMDKDKLSRNDVIGKIYLSWKS  111 (138)
T ss_dssp             EEEEECCSSSCCEEEEEEEESSSS
T ss_pred             EEEEECCCCCCCcEEEEEEEcccc
Confidence            999999999999999999999985

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.77  E-value=2.3e-18  Score=149.96  Aligned_cols=104  Identities=17%  Similarity=0.237  Sum_probs=90.0

Q ss_pred             hcccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEec
Q psy3181          30 ELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLP  104 (349)
Q Consensus        30 ~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~  104 (349)
                      ...|+..+ ++.+....+.|.|+|++|++|+.++.+|.+||||++.++.     ..++|+++++ +.||+|||+|.|.+.
T Consensus        21 ~~~G~l~~-~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~   98 (166)
T 2cm5_A           21 EERGKILV-SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIK   98 (166)
T ss_dssp             CCCCEEEE-EEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECC
T ss_pred             CccceEEE-EEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcc
Confidence            44454333 3777888999999999999999999999999999999974     6889999877 569999999999986


Q ss_pred             cC---CeEEEEEEeecCCCCCCceeEEEEEeCCc
Q psy3181         105 QG---VTSIYLEIYDECSFTMDELIAWAKIPIPS  135 (349)
Q Consensus       105 ~~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e  135 (349)
                      ..   ...|.|+|||+|.++++++||.+.|++.+
T Consensus        99 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~  132 (166)
T 2cm5_A           99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA  132 (166)
T ss_dssp             GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred             hHhcCCCEEEEEEEECCCCCCCcEEEeEEEeccc
Confidence            53   46899999999999999999999999995

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=147.15  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=93.3

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|++|+.++..| +||||++.+.     ...++|+++++ +.||+|||+|.|.+...   ...|.
T Consensus        17 l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~   94 (142)
T 2dmg_A           17 IRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQRRTLD   94 (142)
T ss_dssp             EEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHHHHCEEE
T ss_pred             EEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHhCcCEEE
Confidence            556778899999999999999999989 9999999984     26789999887 56999999999998653   36899


Q ss_pred             EEEeecCCCCC--CceeEEEEEeCCccccCCcceeeEEEccCCC
Q psy3181         112 LEIYDECSFTM--DELIAWAKIPIPSSVMKGETHEDWFPLSGKQ  153 (349)
Q Consensus       112 I~V~D~d~~sk--dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~  153 (349)
                      |+|||+|.+++  +++||.+.|+|.++ ..+...++||+|.++.
T Consensus        95 i~V~d~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A           95 VAVKNSGGFLSKDKGLLGKVLVALASE-ELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             EEEEECCCSSCCSCCCCEEEEEECCCS-TTTTCBCCBCCCBCSC
T ss_pred             EEEEECCCccccCCcEEEEEEEecccc-cccccccceeeccCCC
Confidence            99999998863  57999999999954 4344578999998653

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=3e-18  Score=145.15  Aligned_cols=108  Identities=13%  Similarity=0.098  Sum_probs=91.5

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eEEEEEecCCCCCCCccceEEEEEeccC---CeEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---H-CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYL  112 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I  112 (349)
                      +.+....+.|.|+|++|+   ++|.+|.+||||++.+.   + ..++|+++++ +.||+|||+|.|.+...   ...|.|
T Consensus        19 l~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~~~~L~~   94 (138)
T 1wfm_A           19 LDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTL   94 (138)
T ss_dssp             EEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEE
T ss_pred             EEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHcCCCEEEE
Confidence            566778899999999999   36788999999999983   2 3678998876 56999999999998754   478999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +|||+|.+++|++||++.++|.+ +..+...+.|++|...
T Consensus        95 ~V~d~d~~~~dd~lG~~~i~l~~-l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A           95 TLRTCDRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTS  133 (138)
T ss_dssp             EEEECCSSCTTSCSEEEEEESSS-SSSCTTCCEEEECCCC
T ss_pred             EEEECCCCCCCcEEEEEEEEccc-ccCcccccceeeCcCC
Confidence            99999999999999999999996 4444557899999864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.76  E-value=2.9e-18  Score=148.08  Aligned_cols=119  Identities=16%  Similarity=0.215  Sum_probs=97.6

Q ss_pred             cccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEecc
Q psy3181          31 LAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQ  105 (349)
Q Consensus        31 ~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~  105 (349)
                      ..|+..++ +.+....|.|.|+|++|+||+..|.+|.+||||++.++.     ...+|+++++ +.||+|||+|.|.+..
T Consensus        10 ~~G~l~~~-l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~   87 (159)
T 1tjx_A           10 KLGDICFS-LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPF   87 (159)
T ss_dssp             CCCEEEEE-EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCG
T ss_pred             cCCeEEEE-EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCH
Confidence            34543333 777888999999999999999999999999999999852     4678888877 5699999999999865


Q ss_pred             C---CeEEEEEEeecCCCCCCceeEEEEEeCCcc----------cc-CCcceeeEEEccC
Q psy3181         106 G---VTSIYLEIYDECSFTMDELIAWAKIPIPSS----------VM-KGETHEDWFPLSG  151 (349)
Q Consensus       106 ~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~----------l~-~g~~~~~W~~L~~  151 (349)
                      .   ...|.|+|||+|.+++|++||.+.|++...          +. .+....+||+|.+
T Consensus        88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A           88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            4   468999999999999999999999999832          21 2345678999975

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=1.5e-18  Score=146.60  Aligned_cols=91  Identities=18%  Similarity=0.288  Sum_probs=76.7

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCC
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMD  123 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skd  123 (349)
                      ...|.|.|+|++|++++.   .|.+||||++.  .+..+|+++++++.||+|||+|.|.+......|.|+|||+| +++|
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~d   75 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWD   75 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCE
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCC
Confidence            456899999999998853   57899999999  33456766665567999999999999877778999999999 8899


Q ss_pred             ceeEEEEEeCCccccCC
Q psy3181         124 ELIAWAKIPIPSSVMKG  140 (349)
Q Consensus       124 d~LG~v~I~L~e~l~~g  140 (349)
                      ++||++.|+|.++...+
T Consensus        76 d~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           76 TMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEEEGGGSCBCS
T ss_pred             CeEEEEEEEHHHhhhcC
Confidence            99999999999765543

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.76  E-value=1.8e-18  Score=151.87  Aligned_cols=106  Identities=13%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             cceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEe-ec
Q psy3181          45 PVGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIY-DE  117 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~-D~  117 (349)
                      ..|.|.|+|++|++|+.+|. .|.+||||+|.+..     ..++|+++++ +.||+|||+|.|.+......|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESPQGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence            68999999999999999995 79999999999853     3788999887 56999999999999777899999999 99


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      |.+++|++||++.|+|.+ +..+...+.||+|...
T Consensus       107 d~~~~d~~iG~~~i~l~~-l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEE-LDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             STTCSSEEEEEEEECGGG-SCTTSCEEEEEECBCG
T ss_pred             CCCCCCCEEEEEEEEHHH-cccCCCcceeEECCCc
Confidence            999999999999999995 4445568899999864

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=2.4e-18  Score=147.05  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=91.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeec
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDE  117 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~  117 (349)
                      ..+.|.|+|++|++|+.++..|.+||||+|.+.     ...++|+++++ +.||+|||+|.|.+...  ...|.|+|||+
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  107 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWDW  107 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence            468999999999999999999999999999996     46889999887 56999999999998754  46899999999


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |.+++|++||++.|+|.++. .+. .+.||+|..
T Consensus       108 d~~~~~~~iG~~~i~l~~l~-~~~-~~~W~~L~~  139 (149)
T 1a25_A          108 DLTSRNDFMGSLSFGISELQ-KAG-VDGWFKLLS  139 (149)
T ss_dssp             CSSSCCEEEEEEEEEHHHHT-TCC-EEEEEECBC
T ss_pred             CCCCCCCEEEEEEEEHHHhC-cCc-cCCeEEccC
Confidence            99999999999999999654 343 789999975

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=5e-19  Score=149.59  Aligned_cols=105  Identities=19%  Similarity=0.333  Sum_probs=90.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------EEEEEecCCCCCCCccceEEEEE-ecc---CC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC--------------VYETHTDPSGGKFPRWNKEVFCL-LPQ---GV  107 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~--------------~~kTkvvk~~~~nP~WnEtF~F~-V~~---~~  107 (349)
                      .|.|.|+|++|++|+.+|.+|.+||||++.++..              .++|+++++ +.||+|||+|.|. +..   ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHccC
Confidence            6899999999999999999999999999999753              467888776 5699999999997 543   35


Q ss_pred             eEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         108 TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      ..|.|+|||+|.++++++||.+.|+|.++ ..+...+.||+|.++
T Consensus        96 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l-~~~~~~~~W~~L~~~  139 (142)
T 1rh8_A           96 KTLEVTVWDYDRFSSNDFLGEVLIDLSST-SHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSC-GGGTTCCEEEECBCC
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEecccc-ccCCCCCeEEECCcc
Confidence            78999999999999999999999999964 434457899999865

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=147.30  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             cCCCCcceEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNY-GL------VTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---  106 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~-d~------~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---  106 (349)
                      +.+....+.|.|+|++|++|+.. +.      .|.+||||+|.+.   ...++|+++++ +.||+|||+|.|.+...   
T Consensus        19 l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~   97 (147)
T 2enp_A           19 TQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQ   97 (147)
T ss_dssp             EEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHHH
T ss_pred             EEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHhc
Confidence            66778899999999999999984 43      4689999999986   35789999876 56999999999998653   


Q ss_pred             CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       107 ~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      ...|.|+|||+|.++++++||++.|+|.++ ..+.....|+.|.++
T Consensus        98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           98 RRTLLLTVVDFDKFSRHCVIGKVSVPLCEV-DLVKGGHWWKALIPS  142 (147)
T ss_dssp             HSEEEEEEECCSTTCCSCCCEEEEEETTTS-CTTTCCCEEECCBCC
T ss_pred             cCEEEEEEEECCCCcCCcEEEEEEEechhc-CCCCCccEEEEeecC
Confidence            368999999999999999999999999964 434446789999865

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.74  E-value=1.1e-17  Score=143.36  Aligned_cols=108  Identities=17%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHC---VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~---~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|++|+.++.+|.+||||+|.+  ++.   .++|+++++ +.||+|||+|.|.+...   ...|.
T Consensus        23 l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~  101 (153)
T 1w15_A           23 LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVE  101 (153)
T ss_dssp             EEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEE
T ss_pred             EEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEE
Confidence            6677889999999999999999999999999999998  333   678999887 56999999999998764   37899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |+|||+|.++++++||.+.|++.+   .+.....|+.|..
T Consensus       102 v~V~d~d~~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~  138 (153)
T 1w15_A          102 FLVLDSERGSRNEVIGRLVLGATA---EGSGGGHWKEICD  138 (153)
T ss_dssp             EEEEECCTTSCCEEEEEEEESTTC---CSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcEEEEEEECCCC---CchHHHHHHHHHh
Confidence            999999999999999999999985   2333456666643

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.72  E-value=2.5e-17  Score=145.06  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=77.6

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM  122 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk  122 (349)
                      ....+.|.|+|++|++++   ..|++||||+|+  .+..+|+++++++.||+|||+|.|.+......|.|+|||+| +++
T Consensus        10 ~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           10 GGILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CSCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSC
T ss_pred             CCceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCC
Confidence            345789999999999884   358899999999  33567777765567999999999999877788999999999 889


Q ss_pred             CceeEEEEEeCCccccCC
Q psy3181         123 DELIAWAKIPIPSSVMKG  140 (349)
Q Consensus       123 dd~LG~v~I~L~e~l~~g  140 (349)
                      |++||++.|+|.++...+
T Consensus        84 dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             CEEEEEEEEEGGGSCBCS
T ss_pred             CceEEEEEEEHHHhcccC
Confidence            999999999999765544

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.69  E-value=1.3e-16  Score=161.18  Aligned_cols=120  Identities=20%  Similarity=0.349  Sum_probs=102.1

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCC
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFT  121 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~s  121 (349)
                      ....|.|.|+|++|++|+..|.+|.+||||++.+++..++|++++++ .||.|||+|.|.+... ...|.|+|||+|.++
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t-~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDT-LNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSC-SSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCC-CCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            45678999999999999999999999999999999999999998875 6999999999998755 478999999999999


Q ss_pred             CCceeEEEEEeCCccccCCcc----eeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         122 MDELIAWAKIPIPSSVMKGET----HEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       122 kdd~LG~v~I~L~e~l~~g~~----~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      +|++||++.++|.++.. +..    ...|++|.++    ..|+|+|.+.+.
T Consensus       462 ~~d~lG~~~~~l~~l~~-~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~  507 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRT-EQESKGPMTRRLLLHEV----PTGEVWVRFDLQ  507 (510)
T ss_dssp             SCCEEEEEEEEHHHHHH-HHHHHCSCCEEEECBSS----SSCEEEEEEEEE
T ss_pred             CCCceEEEEEEHHHhcc-ccCCCCceeeeecCCCC----CCceEEEEEEEE
Confidence            99999999999996443 222    5689999754    459999988764

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.69  E-value=1.8e-16  Score=136.04  Aligned_cols=127  Identities=7%  Similarity=0.050  Sum_probs=105.1

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEee
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYD  116 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D  116 (349)
                      +.+....-.|+|+|.+|.+|+     |++|||+++.+.+.+++|++++++..||+|||.|.|++...   +..|.|.|+|
T Consensus        14 ~~~~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d   88 (144)
T 3l9b_A           14 LVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFN   88 (144)
T ss_dssp             -----CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEE
T ss_pred             cccCCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEE
Confidence            445556677999999999998     58999999999999999999985467999999999998643   6899999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      +++++++.+||++.++|.++...+. ...+-+|.+.+.....++|.+.++|.|.+.
T Consensus        89 ~~~v~~nrlIG~~~i~Lq~lv~~~~-l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           89 YSKVFSNKLIGTFRMVLQKVVEENR-VEVSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             ECTTSCCEEEEEEEEESHHHHHHSE-EEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             CccccCCCEEEEEEEEhHHhccCCe-EEEeecccCCCCCccccEEEEEEEecCCCC
Confidence            9999999999999999997766654 445677776656666799999999998764

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.67  E-value=5.8e-16  Score=159.20  Aligned_cols=110  Identities=17%  Similarity=0.189  Sum_probs=96.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc--CCeEEEEEEeecCCCCCC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ--GVTSIYLEIYDECSFTMD  123 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~--~~~~L~I~V~D~d~~skd  123 (349)
                      .|.|.|+|++|++|+. |.+|++||||+|.+++..++|++++++ .||+|||+|.|.+..  ....|+|+|||+|.+++|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~t-lNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNN-NNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSC-SSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCC-CCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            7899999999999998 999999999999999999999999885 599999999998643  568899999999999999


Q ss_pred             ceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         124 ELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       124 d~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      |+||.+.++|..    |. .+.|++|.       .|+|+++++.+-
T Consensus       471 D~LG~~~~~L~~----g~-~~~~~~l~-------~G~l~~~~~~~c  504 (540)
T 3nsj_A          471 DLLGSCDRSPHS----GF-HEVTCELN-------HGRVKFSYHAKC  504 (540)
T ss_dssp             EEEEEEEECCCS----EE-EEEEEECS-------SSEEEEEEEEEE
T ss_pred             CEEEEEEEEeeC----Cc-EEEEEEcC-------CeEEEEEEEEEE
Confidence            999999999882    43 67899875       289998887653

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=1.5e-15  Score=142.14  Aligned_cols=111  Identities=16%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|++|+.+|.+|.+||||++.+.  +   .+.+|+++++ +.||+|||+|.|.++..   ...|.
T Consensus       143 l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~  221 (284)
T 2r83_A          143 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVV  221 (284)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTGGGEEEE
T ss_pred             EEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHhCceEEE
Confidence            44556788999999999999999999999999999984  2   4678888776 56999999999998754   46799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCcc----------c-cCCcceeeEEEccC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSS----------V-MKGETHEDWFPLSG  151 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~----------l-~~g~~~~~W~~L~~  151 (349)
                      |+|||+|.++++++||++.+++...          + ..+....+|++|.+
T Consensus       222 i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          222 VTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             EEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             EEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999999999742          1 12344678999975

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.63  E-value=2.9e-15  Score=156.50  Aligned_cols=121  Identities=18%  Similarity=0.241  Sum_probs=102.1

Q ss_pred             CcceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEe
Q psy3181          44 NPVGRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIY  115 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~  115 (349)
                      ...+.|.|+|++|++|+..+.  .|.+||||+|.+.+     .+.+|+++++++.||+|||+|.|.+..+ ...|+|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            467899999999999999884  68999999999843     6889999998767999999999998755 378999999


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEEE
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSYT  168 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~~  168 (349)
                      |+|.++++++||++.++|.+ +..|.   .|++|....|.. ..|.|.+.++|.
T Consensus       574 D~D~~~~dd~iG~~~ipl~~-L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNS-LKQGY---RHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGG-BCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EcCCCCCCceeEEEEEEHHH-cCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99999999999999999995 55554   699997665543 457888888764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.54  E-value=1.2e-14  Score=154.15  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=94.6

Q ss_pred             CCCCcceEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEE
Q psy3181          41 LIQNPVGRLNITVVQAKLVKN---YGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLE  113 (349)
Q Consensus        41 ~~~~~~G~L~V~Iv~ArnL~~---~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~  113 (349)
                      ......|.|.|+|++|++|+.   +|..|++||||+|.++   ..+++|+++++ +.||+|||+|.|.+.. ....|+|+
T Consensus        12 ve~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~~~~~L~~~   90 (749)
T 1cjy_A           12 VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEIT   90 (749)
T ss_dssp             -CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCBCEEE
T ss_pred             ccCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCCCCCEEEEE
Confidence            344678999999999999999   8888999999999998   46899999887 5699999999999976 46789999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |||+|.++ |++||++.|+|.+ +..+...+.|++|.+
T Consensus        91 V~D~D~~~-ddfIG~v~I~L~~-L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           91 LMDANYVM-DETLGTATFTVSS-MKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             EEECCSSS-CEEEEEECCBSTT-SCTTCCCCEEEEETT
T ss_pred             EEECCCCC-CceeEEEEEEHHH-cCCCCceEEEEecCC
Confidence            99999999 9999999999996 456666789999974

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.53  E-value=1.9e-15  Score=143.23  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|.|+|++|++|+.+|..|.+||||++.+.  +   .+++|+++++ +.||+|||+|.|.+...   ...|.
T Consensus       145 l~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~  223 (296)
T 1dqv_A          145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLS  223 (296)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCC
T ss_pred             EEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHccCcEEE
Confidence            44556689999999999999999999999999999985  2   5788998876 56999999999998754   35799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSS  136 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~  136 (349)
                      |+|||+|.++++++||.+.|++...
T Consensus       224 i~V~d~d~~~~~~~iG~~~i~l~~~  248 (296)
T 1dqv_A          224 IAVVDYDCIGHNEVIGVCRVGPEAA  248 (296)
T ss_dssp             CEEEECCSSSCCEEEEECCCSSCTT
T ss_pred             EEEEeCCCCCCCceEEEEEECCccC
Confidence            9999999999999999999999853

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.51  E-value=1.1e-15  Score=155.13  Aligned_cols=121  Identities=15%  Similarity=0.261  Sum_probs=22.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCC--CCCCccceEEEEEeccCCeEEEEEEeec-C--
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSG--GKFPRWNKEVFCLLPQGVTSIYLEIYDE-C--  118 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~--~~nP~WnEtF~F~V~~~~~~L~I~V~D~-d--  118 (349)
                      ..|.|.|+|++|++|+++|     ||||++.+++. ..+|++++++  +.||.|||+|.|.+.+....|.|+|||+ |  
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEECC--------------------------------------------------CCEECC-------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            4578999999999999887     89999999875 5689988764  2699999999999655568899999994 4  


Q ss_pred             -CCCCCceeEEEEEeCCccccCCcceeeEEEccCCC-----------------------CCCcceEEEEEEEEEEcc
Q psy3181         119 -SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-----------------------GEDKEGMINLVLSYTVSF  171 (349)
Q Consensus       119 -~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-----------------------g~~~~GeI~L~L~~~p~~  171 (349)
                       ..++|++||.+.|++.+ +..+...+.||+|....                       +....|.|+|++.|.+..
T Consensus        84 ~~~~~d~~lG~v~i~l~~-l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVAT-LAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             ------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             ccCCCCceEEEEEEEHHH-hcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence             36789999999999995 44555688999995422                       123469999999998654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.37  E-value=1e-12  Score=137.98  Aligned_cols=105  Identities=23%  Similarity=0.282  Sum_probs=91.1

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEee
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYD  116 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D  116 (349)
                      ...+.|.|+|++|++|+++|.+|.+||||++.+     ...+.+|++++++ .||.|||+|.|.+...  ...|.|+|||
T Consensus       169 ~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~t-lnP~wne~f~f~~~~~~~~~~L~v~v~d  247 (674)
T 3pfq_A          169 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSS-LNPEWNETFRFQLKESDKDRRLSVEIWD  247 (674)
T ss_dssp             ECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSC-SSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred             eccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccc-cCCCccceeeeecccCCccceeeeEEee
Confidence            346889999999999999999999999999998     3467899998875 6999999999998643  4679999999


Q ss_pred             cCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      +|.+++|++||.+.+++.++...+  .+.|+.|..
T Consensus       248 ~d~~~~dd~iG~~~i~l~~l~~~~--~~~w~~Lls  280 (674)
T 3pfq_A          248 WDLTSRNDFMGSLSFGISELQKAG--VDGWFKLLS  280 (674)
T ss_dssp             CCSSSCCEECCBCCCBTTHHHHCC--EEEEEECBC
T ss_pred             cccccccccccccccchhhhccCC--cccceeecc
Confidence            999999999999999999765544  488999864

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.33  E-value=1.1e-11  Score=132.79  Aligned_cols=112  Identities=13%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceE-EEEE-eccC-CeEEEEEE
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKE-VFCL-LPQG-VTSIYLEI  114 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEt-F~F~-V~~~-~~~L~I~V  114 (349)
                      ..+.|.|+|++|++|+..    .+||||+|.+.+       .+++|+++++++.||+|||+ |.|. +..+ ...|+|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            358899999999999864    589999999864       57899999887789999998 9998 6543 47899999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcc-eEEEEEEEEE
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKE-GMINLVLSYT  168 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~-GeI~L~L~~~  168 (349)
                      ||++    +++||+++++|+ .+..|.   ++++|.+..|.... +.|.+.+.+.
T Consensus       724 ~D~d----ddfiG~~~ipL~-~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLD-GIKPGY---RHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             EETT----SCEEEEEEEEST-TCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EecC----CCeeeEEEEEHH-HcCCcc---eEEEEeCCCCCCCCceEEEEEEEEE
Confidence            9986    799999999999 566665   57888776554333 7777777654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.30  E-value=8.4e-12  Score=134.48  Aligned_cols=112  Identities=13%  Similarity=0.261  Sum_probs=90.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccce-EEEEE-ecc-CCeEEEEEEe
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNK-EVFCL-LPQ-GVTSIYLEIY  115 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnE-tF~F~-V~~-~~~~L~I~V~  115 (349)
                      ....|.|+|++|++|+..    .+||||+|.+.+      .+++|+++++++.||+||| +|.|. +.. ....|+|+||
T Consensus       723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~  798 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF  798 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence            345899999999999863    589999999854      3579999988778999999 69998 643 3478999999


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEEE
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSYT  168 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~~  168 (349)
                      |+|    +++||++.++|. .+..|.   ++++|.+..|.. ..|.|.+.+.+.
T Consensus       799 D~d----ddfiG~~~lpL~-~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVS-AIRSGY---HYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             ETT----TEEEEEEEEETT-TCCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCC----ccEEeeEEEEHH-HcCCCc---eEEEecCCCCCccCceEEEEEEEEE
Confidence            987    899999999999 466665   578887665543 568888888875

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.30  E-value=1.3e-11  Score=132.11  Aligned_cols=113  Identities=16%  Similarity=0.283  Sum_probs=88.5

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEE-ecCCCCCCCccce-EEEE-EeccC-CeEEEEE
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETH-TDPSGGKFPRWNK-EVFC-LLPQG-VTSIYLE  113 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTk-vvk~~~~nP~WnE-tF~F-~V~~~-~~~L~I~  113 (349)
                      ...|.|.|+|++|++|+.    +.+||||+|.+.+      .+++|+ ++++++.||+||| +|.| .+..+ ...|+|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            357899999999999985    4689999999832      368999 8887778999999 6999 77543 4689999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEEE
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSYT  168 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~~  168 (349)
                      |||+|    +++||++.++|+. +..|.   .|++|....|.. ..+.|.+.+.+.
T Consensus       751 V~D~d----~d~iG~~~ipl~~-L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINA-LNSGY---HHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGG-BCCEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEeC----CCccceEeeehhh-cCCCc---EEEeccCCCCCCCCceEEEEEEEEE
Confidence            99987    7999999999994 66554   688887654432 346777766653

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.97  E-value=5.1e-09  Score=88.75  Aligned_cols=118  Identities=15%  Similarity=0.193  Sum_probs=85.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCeE----EEEEecCCCCCCCccceEEEEEeccCCeEEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVGHCV----YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEI  114 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~~~----~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V  114 (349)
                      .+.....+.|+|.+.+..-.+-.. .....||||.|.+....    -+|-+.++.+..|+||++|.-++.++ ..|.|.|
T Consensus         3 ~~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~V   81 (138)
T 2enj_A            3 SGSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIV   81 (138)
T ss_dssp             CCCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEE
T ss_pred             CcccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEE
Confidence            444667788999998876543222 12358999999886432    33312223355999999999998665 8999999


Q ss_pred             eecCCCCCCceeEEEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         115 YDECSFTMDELIAWAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       115 ~D~d~~skdd~LG~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                      ++...    +|++.++|+++++...    +...+.|+.|++      .|.|++.+.|.
T Consensus        82 fh~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP------~Gkl~v~i~~~  129 (138)
T 2enj_A           82 KGKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP------QGRMLMNARYF  129 (138)
T ss_dssp             ECSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS------SCEEEEEEEEC
T ss_pred             EcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEEEE
Confidence            97553    8999999999976632    345789999985      49999999985

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.95  E-value=1.6e-08  Score=84.61  Aligned_cols=113  Identities=12%  Similarity=0.202  Sum_probs=83.5

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----EEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCV----YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF  120 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~----~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~  120 (349)
                      ..+.|+|.+.++.--+-.......||||.|.+....    -+|-+.++.+..|+||++|.-++.++ ..|.|.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC-
Confidence            456788888776542222222358999999886432    24434455577999999999998665 899999997663 


Q ss_pred             CCCceeEEEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181         121 TMDELIAWAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSYT  168 (349)
Q Consensus       121 skdd~LG~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~~  168 (349)
                         +|++.++|+++++...    +...+.|+.|++      .|.|++.+.|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP------~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEEEe
Confidence               8999999999976632    345788999985      49999998874

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=94.88  E-value=0.014  Score=50.29  Aligned_cols=66  Identities=8%  Similarity=0.071  Sum_probs=49.9

Q ss_pred             CCcceEEEEeeeeeecccc-------------C--cCceeEEecee--ec--------CChhhHhhhhhhh--heeeeee
Q psy3181         250 NPVGRLNITVVQILSIGRY-------------L--VPTYQIVSGAY--YR--------SSRSEQEVCSCKF--LALIKLD  302 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~-------------~--~~~~~~~~~~~--~~--------~~~~~~~~~~~~~--~~~~~~~  302 (349)
                      ...|.|.|+|++|.-....             |  =|||.|.+|..  ++        ||+ |||.....+  ...+.++
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~-WNE~F~f~v~~~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPT-YNEEFCANVTDGGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCE-EEEEEEEEEEEECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCc-cCcEEEEEcCCCCEEEEE
Confidence            5789999999999864321             2  29999999764  33        899 999876655  3467788


Q ss_pred             eeecccccccCccc
Q psy3181         303 ILDTYLFSANKPIP  316 (349)
Q Consensus       303 ~~~~~~~~~~~~~~  316 (349)
                      |+|...|+.++.|-
T Consensus       105 V~D~d~~~~dd~iG  118 (157)
T 2fk9_A          105 VFHETPLGYDHFVA  118 (157)
T ss_dssp             EEECCSSSSCEEEE
T ss_pred             EEECCCCCCCCEEE
Confidence            89999998887654

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=93.84  E-value=0.063  Score=43.59  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             CCCcceEEEEeeeeeeccccCc-----CceeEEecee-ec---------CChhhHhhhhhhh---heeeeeeeeeccccc
Q psy3181         249 QNPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR---------SSRSEQEVCSCKF---LALIKLDILDTYLFS  310 (349)
Q Consensus       249 ~~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  310 (349)
                      ..+.|+|.|+|+++.-......     |||.+..+.. ++         ||. |||-..-.+   ...+.++|+|...|+
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~-Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPE-WNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCE-EEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCc-cCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            3588999999999987765432     9999988754 43         677 987655544   457889999999888


Q ss_pred             ccCccc
Q psy3181         311 ANKPIP  316 (349)
Q Consensus       311 ~~~~~~  316 (349)
                      .++.|-
T Consensus        85 ~d~~lG   90 (136)
T 1wfj_A           85 EDDAVG   90 (136)
T ss_dssp             TTCCSE
T ss_pred             CCceEE
Confidence            887653

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=93.75  E-value=0.061  Score=43.69  Aligned_cols=66  Identities=12%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCcceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccc
Q psy3181         249 QNPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSA  311 (349)
Q Consensus       249 ~~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  311 (349)
                      ..+.|+|.|+|+++.-......     |||.+..+.. ++        ||. |||.....+   -..+.++|+|...|+.
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~-wne~f~f~~~~~~~~l~i~V~d~d~~~~   87 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPE-WNKVFTFPIKDIHDVLEVTVFDEDGDKP   87 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCC-CCEEEEEEESCTTCEEEEEEEEEETTEE
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCc-cccEEEEEecCCCCEEEEEEEECCCCCC
Confidence            3578999999999987665432     9999998754 54        788 998655544   3568899999988877


Q ss_pred             cCcc
Q psy3181         312 NKPI  315 (349)
Q Consensus       312 ~~~~  315 (349)
                      ++.|
T Consensus        88 ~~~l   91 (133)
T 2ep6_A           88 PDFL   91 (133)
T ss_dssp             EEEC
T ss_pred             CCee
Confidence            7654

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=93.19  E-value=0.047  Score=44.97  Aligned_cols=62  Identities=5%  Similarity=-0.080  Sum_probs=45.4

Q ss_pred             CcceEEEEeeeeeeccccCc--CceeEEeceeec---------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         251 PVGRLNITVVQILSIGRYLV--PTYQIVSGAYYR---------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      ..|+|.|+|+++...+.-|.  ||+.|. +..+.         ||. |||...-.+   -..+.++|+|.- |+.|+.|
T Consensus         3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~-~~~~kt~~~~~~t~nP~-WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   78 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK-VQNVKSTTIAVRGSQPS-WEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   78 (131)
T ss_dssp             CCEEEEEEEEEEECSSCGGGCEEEEEEE-ETTEEEECCCEESSSCE-EEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred             cceEEEEEEEEeECCCCCCCcCeEEEEE-ecCEEEeEecCCCCCce-ECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence            45899999999997765444  999988 33222         888 998765443   245889999998 8877755

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.71  E-value=0.1  Score=42.56  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=50.3

Q ss_pred             CCcceEEEEeeeeeecccc--Cc--CceeEEecee-ec--------CChhhHhhhhhhh-------heeeeeeeeecccc
Q psy3181         250 NPVGRLNITVVQILSIGRY--LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF-------LALIKLDILDTYLF  309 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~--~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  309 (349)
                      ...|+|.|+|+++.-....  |.  |||.+..+.. ++        ||. |||.+.-.+       ...+.++|+|...|
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPV-WNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCE-EEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCc-cCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            3579999999999766543  23  9999998654 54        888 998765554       36789999999999


Q ss_pred             cccCccc
Q psy3181         310 SANKPIP  316 (349)
Q Consensus       310 ~~~~~~~  316 (349)
                      +.++.|-
T Consensus        83 ~~~~~lG   89 (140)
T 2dmh_A           83 GQNKLIG   89 (140)
T ss_dssp             SSCCCCE
T ss_pred             CCCceEE
Confidence            8887553

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=92.58  E-value=0.12  Score=42.75  Aligned_cols=67  Identities=6%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             CCCCcceEEEEeeeeeeccccC---c--CceeEEece-------eec--------CChhhHhhhhhhh---heeeeeeee
Q psy3181         248 IQNPVGRLNITVVQILSIGRYL---V--PTYQIVSGA-------YYR--------SSRSEQEVCSCKF---LALIKLDIL  304 (349)
Q Consensus       248 ~~~~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~-------~~~--------~~~~~~~~~~~~~---~~~~~~~~~  304 (349)
                      .....|+|.|+|+++.-.....   .  |||.+..+.       .++        ||. |||.+.-.+   -..+.++|+
T Consensus        15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~~l~~~V~   93 (153)
T 3b7y_A           15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK-WNEEILFRVHPQQHRLLFEVF   93 (153)
T ss_dssp             CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCC-CCEEEEEEECTTTCEEEEEEE
T ss_pred             CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCC-CCCEEEEEecCCCCEEEEEEE
Confidence            3668899999999998665432   2  999998873       243        788 998655443   356889999


Q ss_pred             ecccccccCcc
Q psy3181         305 DTYLFSANKPI  315 (349)
Q Consensus       305 ~~~~~~~~~~~  315 (349)
                      |...|+.++.|
T Consensus        94 d~d~~~~d~~i  104 (153)
T 3b7y_A           94 DENRLTRDDFL  104 (153)
T ss_dssp             ECCSSSCCEEE
T ss_pred             ECCCCcCCCee
Confidence            99888877654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=92.45  E-value=0.075  Score=45.81  Aligned_cols=63  Identities=5%  Similarity=-0.092  Sum_probs=46.1

Q ss_pred             CCcceEEEEeeeeeeccccCc--CceeEEeceeec---------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181         250 NPVGRLNITVVQILSIGRYLV--PTYQIVSGAYYR---------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  315 (349)
                      +..|.|.|+|+++...+.-|-  ||+.+. +..++         ||. |||...-.+   -..+.++|+|.- |+.|+.|
T Consensus        11 g~~~~L~V~V~~A~~l~~~g~~DPYV~v~-~~~~kt~~~~~~t~nP~-WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   87 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDGAQEKFNTYVTLK-VQNVESTTIAVRGSQPS-WEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   87 (167)
T ss_dssp             SCCCEEEEEEEEEECSSCGGGCEEEEEEE-ETTEEEECCCEESSSCE-EEEEEEEECCCTTSEEEEEEEECC-SSCCEEE
T ss_pred             CceEEEEEEEEEEECCCCCCCCCeEEEEE-ecceEEEEecCCCCCCC-CCCEEEEEeeCCCCEEEEEEEECC-CCCCceE
Confidence            467899999999997754343  999988 43333         788 998765444   346889999988 8877754

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=91.66  E-value=0.12  Score=44.22  Aligned_cols=66  Identities=8%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             CCCcceEEEEeeeeeeccccC---c--CceeEEece-------eec--------CChhhHhhhhhhh---heeeeeeeee
Q psy3181         249 QNPVGRLNITVVQILSIGRYL---V--PTYQIVSGA-------YYR--------SSRSEQEVCSCKF---LALIKLDILD  305 (349)
Q Consensus       249 ~~~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~-------~~~--------~~~~~~~~~~~~~---~~~~~~~~~~  305 (349)
                      ....|.|.|+|+++.-.....   .  |||.+.++.       -++        ||. |||.+.-.+   ...+.++|+|
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK-WNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCE-EEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCc-ccceEEEEEcCCCCEEEEEEEE
Confidence            357899999999998665432   2  999999874       243        888 998655433   3578999999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus        83 ~d~~~~d~~l   92 (176)
T 3m7f_B           83 ENRLTRDDFL   92 (176)
T ss_dssp             CC----CEEE
T ss_pred             CCCCCCCcEE
Confidence            9888877654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=91.04  E-value=0.15  Score=41.97  Aligned_cols=59  Identities=20%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             CCcceEEEEeeeeeeccccC---c--CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccc
Q psy3181         250 NPVGRLNITVVQILSIGRYL---V--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLF  309 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~  309 (349)
                      ..+|+|.|+|+++.-.....   .  |||.+.+|.. ++        ||. |||-+.-.+   -..+.++|+|...|
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~-Wne~f~f~v~~~~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPV-WEENFHFECHNSSDRIKVRVLDEDDD   89 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCE-EEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCC-cccEEEEEecCCCCEEEEEEEECCCC
Confidence            35799999999998665432   2  9999999765 54        888 998654433   35788999998876

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.00  E-value=1.9  Score=37.02  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=82.7

Q ss_pred             CCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC--------CeEE
Q psy3181          43 QNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG--------VTSI  110 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--------~~~L  110 (349)
                      ..-.+.+.|+|.++.--+..- ..+..+|..-+.+.   -+...|.++.  +.+|.+|-+-.+.|.-.        ...+
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence            455678899999886322110 12334675555543   4566777765  45999999988887432        2578


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCC-CcceEEEEEEEEE
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE-DKEGMINLVLSYT  168 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~-~~~GeI~L~L~~~  168 (349)
                      .++++... .+..+.||.+.|+|.+++..........+|.+..+. ..-|.|.+.+++.
T Consensus        92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR  149 (156)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEe
Confidence            88888764 334568999999999888665544556678765443 4679999888874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=90.94  E-value=0.17  Score=43.73  Aligned_cols=65  Identities=9%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCcceEEEEeeeeeecc-cc---Cc-CceeEEecee-ec--------CChhhHhhhhhhh--heeeeeeeeecccccccC
Q psy3181         250 NPVGRLNITVVQILSIG-RY---LV-PTYQIVSGAY-YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSANK  313 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~-~~---~~-~~~~~~~~~~-~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  313 (349)
                      ...|+|.|+|+++.-.. ..   +. |||.|..+-. ++        ||. |||.....+  ...+.++|+|.-.|+.++
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~-Wne~f~f~v~~~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPK-WKQPLTVIVTPVSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCE-EEEEEEEEECTTCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCe-ECCEEEEEeCCCCEEEEEEEECCCCCCCc
Confidence            46799999999998765 21   12 9999988654 44        788 998654433  667889999999888776


Q ss_pred             cc
Q psy3181         314 PI  315 (349)
Q Consensus       314 ~~  315 (349)
                      .|
T Consensus       112 ~l  113 (173)
T 2nq3_A          112 LL  113 (173)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=89.38  E-value=0.29  Score=39.61  Aligned_cols=65  Identities=9%  Similarity=0.037  Sum_probs=47.0

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEe-----cee-ec--------CChhhHhhhhhhh-------heeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVS-----GAY-YR--------SSRSEQEVCSCKF-------LALIKLDIL  304 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~-----~~~-~~--------~~~~~~~~~~~~~-------~~~~~~~~~  304 (349)
                      ..|+|.|+|+++.-......     ||++|..     +.. ++        ||. |||......       -..+.++|+
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~-wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK-WNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCC-CCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCc-cccEEEEccCCHHHhcCCEEEEEEE
Confidence            46999999999986554332     8999987     222 44        788 998655542       267899999


Q ss_pred             ecccccc--cCccc
Q psy3181         305 DTYLFSA--NKPIP  316 (349)
Q Consensus       305 ~~~~~~~--~~~~~  316 (349)
                      |...|+.  ++.|-
T Consensus        98 d~d~~~~~~~~~lG  111 (141)
T 1v27_A           98 DQARVREEESEFLG  111 (141)
T ss_dssp             EBCSSSSCCBCCCE
T ss_pred             ECCCCcCCCCceEE
Confidence            9999987  66543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=89.25  E-value=0.24  Score=39.41  Aligned_cols=61  Identities=8%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             cceEEEEeeeeeecccc------Cc--CceeEEece----eec--------CChhhHhhhhhhh----heeeeeeeeecc
Q psy3181         252 VGRLNITVVQILSIGRY------LV--PTYQIVSGA----YYR--------SSRSEQEVCSCKF----LALIKLDILDTY  307 (349)
Q Consensus       252 ~g~lsiti~~~~~~~~~------~~--~~~~~~~~~----~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~  307 (349)
                      +|+|.|+|+++.-....      |-  ||+.+..+.    .++        ||. |||-..-.+    ...+.++|+|.-
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPV-WNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCE-EEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCc-ccceEEEEecCCCCCEEEEEEEECC
Confidence            58999999999877652      22  999999873    244        788 997655443    567899999988


Q ss_pred             cccccCc
Q psy3181         308 LFSANKP  314 (349)
Q Consensus       308 ~~~~~~~  314 (349)
                      .|+ ++.
T Consensus        81 ~~~-~~~   86 (126)
T 1rlw_A           81 YVM-DET   86 (126)
T ss_dssp             SSC-CEE
T ss_pred             CCC-Cce
Confidence            775 553

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.66  E-value=5.9  Score=35.77  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=44.0

Q ss_pred             CCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--------------C-----CeEEEEEecCCCCCCCccceEEEE
Q psy3181          41 LIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--------------G-----HCVYETHTDPSGGKFPRWNKEVFC  101 (349)
Q Consensus        41 ~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--------------g-----~~~~kTkvvk~~~~nP~WnEtF~F  101 (349)
                      .++..+..|.|++.+|.--+.. ....-+--|++.+              +     ...++|.+.+. ..+|.|+|++.+
T Consensus        21 ~Pgd~RNdLYVtl~~g~F~~~~-k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YH-nk~P~w~EtIKi   98 (220)
T 3l4c_A           21 MPGDVRNDIYVTLVQGDFDKGS-KTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQ-VKQPRWFETVKV   98 (220)
T ss_dssp             -----CEEEEEEEEEEECCCSS-SSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTT-CSSCCCCEEEEE
T ss_pred             cCCCCcccEEEEeeEeEECCCC-CCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEc-CCCCCceEeEEE
Confidence            3455777888888887522211 1111223333322              1     13577777765 349999999999


Q ss_pred             EeccC---CeEEEEEEeecC
Q psy3181         102 LLPQG---VTSIYLEIYDEC  118 (349)
Q Consensus       102 ~V~~~---~~~L~I~V~D~d  118 (349)
                      .++..   ..-|.|+++...
T Consensus        99 ~LP~~~~~~~HLlFtFrH~S  118 (220)
T 3l4c_A           99 AIPIEDVNRSHLRFTFRHRS  118 (220)
T ss_dssp             EECTTSSTTEEEEEEEEECC
T ss_pred             eeChhhcCCeEEEEEEEEec
Confidence            99865   467889988643

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=87.89  E-value=0.28  Score=39.94  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             CcceEEEEeeeeeecccc----------------CcCceeEEecee--ec--------CChhhHhhhhhhh--heeeeee
Q psy3181         251 PVGRLNITVVQILSIGRY----------------LVPTYQIVSGAY--YR--------SSRSEQEVCSCKF--LALIKLD  302 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~----------------~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~--~~~~~~~  302 (349)
                      ..|.|.|+|++|.-....                .=|||.|.++..  ++        ||. |||.....+  -..+.++
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~-WnE~f~f~v~~~~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA-WHDEFVTDVCNGRKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCE-EEEEEEEEEEEECEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCc-cCCEEEEEecCCCEEEEE
Confidence            569999999999765431                239999988543  12        788 998655444  3567888


Q ss_pred             eeecccccccCccc
Q psy3181         303 ILDTYLFSANKPIP  316 (349)
Q Consensus       303 ~~~~~~~~~~~~~~  316 (349)
                      ++|...|+.++.|-
T Consensus        83 V~d~d~~~~dd~iG   96 (136)
T 1gmi_A           83 VFHDAPIGYDDFVA   96 (136)
T ss_dssp             EEECCSSSSCEEEE
T ss_pred             EEeCCCCCCCCEEE
Confidence            99998888887653

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.61  E-value=0.44  Score=38.81  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEec----eeec--------CChhhHhhhhhhh-------heeeeeeeeec
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSG----AYYR--------SSRSEQEVCSCKF-------LALIKLDILDT  306 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~----~~~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~  306 (349)
                      ..|+|.|+|+++.-......     ||+.+..+    .-++        ||. |||...-.+       -..+.++|+|.
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH-WNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCC-CCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCc-cccEEEECccCHHHcccCEEEEEEEEC
Confidence            56999999999987665432     99999884    1243        888 998765432       35688999999


Q ss_pred             ccccccCcc
Q psy3181         307 YLFSANKPI  315 (349)
Q Consensus       307 ~~~~~~~~~  315 (349)
                      ..|+.++.|
T Consensus       103 d~~~~~~~i  111 (141)
T 2d8k_A          103 DRFSRNDPI  111 (141)
T ss_dssp             CSSSSCEEE
T ss_pred             CCCCCCcEE
Confidence            888877754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=87.57  E-value=0.49  Score=38.00  Aligned_cols=64  Identities=13%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEece------eec--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA------YYR--------SSRSEQEVCSCKF----L--ALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~------~~~--------~~~~~~~~~~~~~----~--~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-......     ||+.+.++.      -+.        ||. |||.+.-.+    +  ..+.++|+|
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~-wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI-FNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCE-EEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCc-CcceEEEECChhhcCceEEEEEEEE
Confidence            67999999999987655332     999998852      233        788 997654332    2  578899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus        93 ~~~~~~~~~l  102 (138)
T 3n5a_A           93 KDKLSRNDVI  102 (138)
T ss_dssp             CCSSSCCEEE
T ss_pred             CCCCCCCcEE
Confidence            9888877654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=87.37  E-value=0.43  Score=38.03  Aligned_cols=64  Identities=9%  Similarity=0.050  Sum_probs=41.8

Q ss_pred             CcceEEEEeeeeeeccccC-----cCceeEEe-----cee-ec--------CChhhHhhhhhhh-------heeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL-----VPTYQIVS-----GAY-YR--------SSRSEQEVCSCKF-------LALIKLDIL  304 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~-----~~~~~~~~-----~~~-~~--------~~~~~~~~~~~~~-------~~~~~~~~~  304 (349)
                      ..|+|.|+|+++.-.....     =||+.+..     +.. ++        ||. |||...-..       -..+.++|+
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK-WNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCE-EEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCc-cccEEEEccCCHHHhcCCeEEEEEE
Confidence            5699999999997665432     29999987     222 44        788 998655442       357889999


Q ss_pred             ecccccc--cCcc
Q psy3181         305 DTYLFSA--NKPI  315 (349)
Q Consensus       305 ~~~~~~~--~~~~  315 (349)
                      |...|+.  ++.|
T Consensus        95 d~d~~~~~~~~~l  107 (129)
T 2bwq_A           95 DQARVREEESEFL  107 (129)
T ss_dssp             EC-------CEEE
T ss_pred             ECCcCcCcCCcee
Confidence            9988876  5543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=87.17  E-value=0.65  Score=37.87  Aligned_cols=64  Identities=13%  Similarity=-0.047  Sum_probs=46.4

Q ss_pred             CcceEEEEeeeeeeccccCc--CceeEEece-----eec--------CChhhHhhhhhhh------heeeeeeeeecccc
Q psy3181         251 PVGRLNITVVQILSIGRYLV--PTYQIVSGA-----YYR--------SSRSEQEVCSCKF------LALIKLDILDTYLF  309 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~--~~~~~~~~~-----~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~~~  309 (349)
                      ..|+|.|+|+++.....-|.  ||++|.++-     .++        ||. |||.....+      -..+.++|+|.-.|
T Consensus        24 ~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~-wnE~f~f~v~~~~l~~~~L~~~V~d~d~~  102 (138)
T 1wfm_A           24 QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT-WEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE-CSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCc-CCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence            56999999999994333333  999998832     133        788 998765543      24688899999888


Q ss_pred             cccCcc
Q psy3181         310 SANKPI  315 (349)
Q Consensus       310 ~~~~~~  315 (349)
                      +.++.|
T Consensus       103 ~~dd~l  108 (138)
T 1wfm_A          103 SRHSVA  108 (138)
T ss_dssp             CTTSCS
T ss_pred             CCCcEE
Confidence            887765

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=87.14  E-value=0.44  Score=38.86  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CcceEEEEeeeeeeccccC---c--CceeEEe---cee-ec--------CChhhHhhhhhhh----h--eeeeeeeeecc
Q psy3181         251 PVGRLNITVVQILSIGRYL---V--PTYQIVS---GAY-YR--------SSRSEQEVCSCKF----L--ALIKLDILDTY  307 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~---~~~-~~--------~~~~~~~~~~~~~----~--~~~~~~~~~~~  307 (349)
                      ..|+|.|+|+++.-.....   .  ||+.+..   +.. ++        ||. |||...-.+    +  ..+.++|+|..
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV-FNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCE-EEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCc-CcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            6799999999997665432   2  9999987   222 33        787 998544333    2  67889999998


Q ss_pred             cccccCcc
Q psy3181         308 LFSANKPI  315 (349)
Q Consensus       308 ~~~~~~~~  315 (349)
                      .|+.++.|
T Consensus       111 ~~~~~~~i  118 (143)
T 3f04_A          111 RFSKHDII  118 (143)
T ss_dssp             SSSCCEEE
T ss_pred             CCCCCceE
Confidence            88877754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=87.13  E-value=0.4  Score=39.06  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             CcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhh-h------heeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCK-F------LALIKLDIL  304 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~-~------~~~~~~~~~  304 (349)
                      ..|+|.|+|+++.-.....   .  ||+.+..+.      .++        ||. |||...-. +      -..+.++|+
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV-WNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCE-EEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCc-CcCEEEEcccCHHHccCCEEEEEEE
Confidence            6799999999998765533   2  999999863      243        788 99876543 2      257899999


Q ss_pred             ecccccccCcc
Q psy3181         305 DTYLFSANKPI  315 (349)
Q Consensus       305 ~~~~~~~~~~~  315 (349)
                      |...|+.++.|
T Consensus       106 d~d~~~~d~~i  116 (142)
T 2chd_A          106 DEDKFGHNEFI  116 (142)
T ss_dssp             EECTTSCEEEE
T ss_pred             ECCCCCCCcEE
Confidence            99888877654

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=86.38  E-value=0.44  Score=39.29  Aligned_cols=65  Identities=14%  Similarity=0.025  Sum_probs=46.8

Q ss_pred             CCcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhhh-----heeeeeeeee
Q psy3181         250 NPVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCKF-----LALIKLDILD  305 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~-----~~~~~~~~~~  305 (349)
                      +..|+|.|+|+++.-.....   .  ||+.+..+.      -++        ||. |||-..-.+     -..+.++|+|
T Consensus        28 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~~~~L~i~V~d  106 (149)
T 1a25_A           28 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE-WNETFRFQLKESDKDRRLSVEIWD  106 (149)
T ss_dssp             ESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCE-EEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCc-CCcEEEEEeccccCCCEEEEEEEE
Confidence            45799999999998665432   2  999998863      233        788 998543332     2468899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus       107 ~d~~~~~~~i  116 (149)
T 1a25_A          107 WDLTSRNDFM  116 (149)
T ss_dssp             CCSSSCCEEE
T ss_pred             CCCCCCCCEE
Confidence            9888877754

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=86.32  E-value=2.3  Score=46.26  Aligned_cols=88  Identities=15%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEEEEecCCCCCCCccceEEEEEec----cCCeEEEEE
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHC----VYETHTDPSGGKFPRWNKEVFCLLP----QGVTSIYLE  113 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~----~~kTkvvk~~~~nP~WnEtF~F~V~----~~~~~L~I~  113 (349)
                      .....+.|+|.++.++...   ...+-||.+.+  |++    ...|+.+.. ..+|.|||.+.|.+.    +.+..|.|+
T Consensus       214 ~~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~t  289 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFA  289 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             hcCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEE
Confidence            4456899999999998654   23567777654  432    334443332 348999999999864    236899999


Q ss_pred             EeecCCC--C----------CCceeEEEEEeCCc
Q psy3181         114 IYDECSF--T----------MDELIAWAKIPIPS  135 (349)
Q Consensus       114 V~D~d~~--s----------kdd~LG~v~I~L~e  135 (349)
                      ||+...-  +          .+..+|.+.++|-+
T Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          290 LYAVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEEEC----------------CEEEEEEEEESBC
T ss_pred             EEEecCCccCccccccccccccceEEEEeeeEEC
Confidence            9996321  1          23478888888763

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=86.30  E-value=0.6  Score=38.86  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~~  305 (349)
                      +.|+|.|+|+++.-.....   .  ||+.|.++.      .++        ||. |||...-.+      -..+.++|+|
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY-YNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCE-EEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCc-ccceEEEEcCHHHhCCcEEEEEEEE
Confidence            5799999999998665433   2  999998852      233        788 998554332      2468899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus       102 ~d~~~~~~~i  111 (159)
T 1tjx_A          102 YDKIGKNDAI  111 (159)
T ss_dssp             CCSSSCCEEE
T ss_pred             CCCCCCCceE
Confidence            9888877754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=85.90  E-value=0.58  Score=39.35  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             CcceEEEEeeeeeecccc---Cc--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRY---LV--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~---~~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-....   |.  ||+.+..+.      .++        ||. |||.....+      -..+.++|+|
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE-FNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCE-EEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCc-ccceEEEEcchHhcCCCEEEEEEEE
Confidence            579999999999766543   22  999998863      243        788 998654333      2378899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus       114 ~d~~~~~~~i  123 (166)
T 2cm5_A          114 YDIGKSNDYI  123 (166)
T ss_dssp             CCSSSCCEEE
T ss_pred             CCCCCCCcEE
Confidence            9888877654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=85.80  E-value=0.59  Score=38.69  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=46.6

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEec---e-eec--------CChhhHhhhhhhh------heeeeeeeeecc
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSG---A-YYR--------SSRSEQEVCSCKF------LALIKLDILDTY  307 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~---~-~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~  307 (349)
                      ..|+|.|+|+++.-......     ||+.+..+   . .++        ||. |||...-.+      -..+.++|+|..
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV-FNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCE-EEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCc-CcccEEEeecHHHcCCCEEEEEEEECC
Confidence            67999999999976654332     99999883   2 243        788 998554433      267889999998


Q ss_pred             cccccCcc
Q psy3181         308 LFSANKPI  315 (349)
Q Consensus       308 ~~~~~~~~  315 (349)
                      .|+.++.|
T Consensus       119 ~~~~~~~i  126 (152)
T 1rsy_A          119 RFSKHDII  126 (152)
T ss_dssp             SSSCCEEE
T ss_pred             CCCCCcEE
Confidence            88877654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=85.03  E-value=0.46  Score=38.69  Aligned_cols=66  Identities=15%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             CCCcceEEEEeeeeeeccc--cCc--CceeEEe-----cee-ec--------CChhhHhhhhhh-h------heeeeeee
Q psy3181         249 QNPVGRLNITVVQILSIGR--YLV--PTYQIVS-----GAY-YR--------SSRSEQEVCSCK-F------LALIKLDI  303 (349)
Q Consensus       249 ~~~~g~lsiti~~~~~~~~--~~~--~~~~~~~-----~~~-~~--------~~~~~~~~~~~~-~------~~~~~~~~  303 (349)
                      .+..|+|.|+|+++.-...  -|.  ||+.+..     +.. ++        ||. |||...-. +      -..+.++|
T Consensus        16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wnE~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT-FNEMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCE-EEEEEEEESCCHHHHTTCEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCC-CccEEEECCcCHHHhCcCEEEEEE
Confidence            4578999999999976653  122  9999887     222 33        788 99854433 1      25788999


Q ss_pred             eecccccccCcc
Q psy3181         304 LDTYLFSANKPI  315 (349)
Q Consensus       304 ~~~~~~~~~~~~  315 (349)
                      +|...|+.++.|
T Consensus        95 ~d~d~~~~~~~l  106 (134)
T 2b3r_A           95 LSAESLRENFFL  106 (134)
T ss_dssp             EECCSSSCCEEE
T ss_pred             EECCCCCCCcEE
Confidence            999888877654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=84.15  E-value=0.69  Score=37.52  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             CCcceEEEEeeeeeeccccC---c--CceeEEecee---------------ec--------CChhhHhhhhhh-------
Q psy3181         250 NPVGRLNITVVQILSIGRYL---V--PTYQIVSGAY---------------YR--------SSRSEQEVCSCK-------  294 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~~---------------~~--------~~~~~~~~~~~~-------  294 (349)
                      |..|+|.|+|+++.-.....   .  ||+.+..+..               ++        ||. |||...-.       
T Consensus        15 y~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~v~~~~l   93 (142)
T 1rh8_A           15 YDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE-WNQTVIYKSISMEQL   93 (142)
T ss_dssp             EETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCE-EEEEEEECSCCHHHH
T ss_pred             EcCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCC-CCCEEEECCcCHHHc
Confidence            44799999999998665432   2  9999998641               33        788 99864332       


Q ss_pred             hheeeeeeeeecccccccCcc
Q psy3181         295 FLALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~  315 (349)
                      .-..+.++|+|...|+.++.|
T Consensus        94 ~~~~l~i~V~d~d~~~~~~~l  114 (142)
T 1rh8_A           94 MKKTLEVTVWDYDRFSSNDFL  114 (142)
T ss_dssp             TTCEEEEEEEEECSSSCEEEE
T ss_pred             cCCEEEEEEEECCCCCCCceE
Confidence            135889999999888877654

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.84  E-value=1.2  Score=36.47  Aligned_cols=65  Identities=15%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             CcceEEEEeeeeeecccc----------C--cCceeEEece----eec--------CChhhHhhhhhhh------heeee
Q psy3181         251 PVGRLNITVVQILSIGRY----------L--VPTYQIVSGA----YYR--------SSRSEQEVCSCKF------LALIK  300 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~----------~--~~~~~~~~~~----~~~--------~~~~~~~~~~~~~------~~~~~  300 (349)
                      ..|+|.|+|+++.-....          |  =||+.|.++.    .++        ||. |||...-.+      -..+.
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPV-FEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCC-CCBCCEECCCHHHHHHSEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCe-EeeeEEEEeChHHhccCEEE
Confidence            569999999999866652          2  2999998852    233        788 998554443      13789


Q ss_pred             eeeeecccccccCccc
Q psy3181         301 LDILDTYLFSANKPIP  316 (349)
Q Consensus       301 ~~~~~~~~~~~~~~~~  316 (349)
                      ++|+|...|+.++.|-
T Consensus       103 ~~V~d~d~~~~~~~iG  118 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIG  118 (147)
T ss_dssp             EEEECCSTTCCSCCCE
T ss_pred             EEEEECCCCcCCcEEE
Confidence            9999998888887553

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=82.35  E-value=0.88  Score=37.50  Aligned_cols=64  Identities=16%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             CcceEEEEeeeeeeccccC-----cCceeEEece------eec--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRYL-----VPTYQIVSGA------YYR--------SSRSEQEVCSCKF----L--ALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~-----~~~~~~~~~~------~~~--------~~~~~~~~~~~~~----~--~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-.....     =||+.|.++.      .++        ||. |||.....+    +  ..+.++|+|
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV-FNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEE-EEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCe-ecceEEEECCHHHhCceEEEEEEEe
Confidence            5699999999997665433     2999998832      133        788 998654443    1  568899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus       107 ~d~~~~~~~l  116 (153)
T 1w15_A          107 SERGSRNEVI  116 (153)
T ss_dssp             CCTTSCCEEE
T ss_pred             CCCCCCCcEE
Confidence            8888877644

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=81.79  E-value=1.4  Score=35.32  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             cceEEEEeeeeeeccccCc-----CceeEEece---eec--------CChhhHhhhhhhh--heeeeeeeeecccccc
Q psy3181         252 VGRLNITVVQILSIGRYLV-----PTYQIVSGA---YYR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSA  311 (349)
Q Consensus       252 ~g~lsiti~~~~~~~~~~~-----~~~~~~~~~---~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  311 (349)
                      -.+|.|+|+++.-......     ||+.|.++.   .++        ||. |||...-.+  ...+.++++|.-.|+.
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPK-WNQHYDLYVGKTDSITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCE-EEEEEEEEEETTCCEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCC-ccCEEEEEeCCCCEEEEEEEECCCCCC
Confidence            4789999999976544322     999998853   244        888 998654333  3458899999988875

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=81.28  E-value=1.1  Score=36.79  Aligned_cols=64  Identities=9%  Similarity=0.035  Sum_probs=44.9

Q ss_pred             CcceEEEEeeeeeecccc----Cc--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRY----LV--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDIL  304 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~----~~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~  304 (349)
                      ..|+|.|+|+++.-....    |.  ||+++.++-      -++        ||. |||...-.+      -..+.++|+
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPL-YDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCE-EEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCc-EeeEEEEEeChhHhCceEEEEEEE
Confidence            579999999999865422    22  999998851      132        788 998544332      235888999


Q ss_pred             ecccccccCcc
Q psy3181         305 DTYLFSANKPI  315 (349)
Q Consensus       305 ~~~~~~~~~~~  315 (349)
                      |...|+.++.|
T Consensus       100 d~d~~~~~~~i  110 (148)
T 3fdw_A          100 HHGRFGRNTFL  110 (148)
T ss_dssp             EECGGGCEEEE
T ss_pred             ECCCCcCCcEE
Confidence            98888877654

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=80.91  E-value=6.5  Score=43.40  Aligned_cols=88  Identities=22%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC----eEEEEEecCCCCCCCccceEEEEEec----cCCeEEEEEE
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GH----CVYETHTDPSGGKFPRWNKEVFCLLP----QGVTSIYLEI  114 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~----~~~kTkvvk~~~~nP~WnEtF~F~V~----~~~~~L~I~V  114 (349)
                      ....+.|+|..+.++.... ....+-||.+.+  |+    ....|+.+.  ..+|.|||.+.|.+.    +....|.|+|
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~--~~~~~Wne~l~f~i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLNYDIYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC--TTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC--CCCCCCCeeEEecCccccCChhcEEEEEE
Confidence            4568899999998875432 223567888766  33    234444332  447889999999864    2368999999


Q ss_pred             eecCCC----CCCceeEEEEEeCCc
Q psy3181         115 YDECSF----TMDELIAWAKIPIPS  135 (349)
Q Consensus       115 ~D~d~~----skdd~LG~v~I~L~e  135 (349)
                      |+....    ..+..||.+.++|-+
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd  454 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFD  454 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBC
T ss_pred             EEecCccCcccccceeEEeeeeeEc
Confidence            986532    123578999888874

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=80.49  E-value=1.7  Score=35.01  Aligned_cols=64  Identities=11%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             CcceEEEEeeeeeecccc----Cc--CceeEEece----eec--------CChhhHhhhhhh-h------heeeeeeeee
Q psy3181         251 PVGRLNITVVQILSIGRY----LV--PTYQIVSGA----YYR--------SSRSEQEVCSCK-F------LALIKLDILD  305 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~----~~--~~~~~~~~~----~~~--------~~~~~~~~~~~~-~------~~~~~~~~~~  305 (349)
                      ..|+|.|+|+++.-....    |-  ||+.+..+.    -++        ||. |||...-. +      -..+.++|+|
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA-FDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE-EEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCc-EeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            569999999999755432    22  999998852    244        788 99865531 1      2578899999


Q ss_pred             cccccccCcc
Q psy3181         306 TYLFSANKPI  315 (349)
Q Consensus       306 ~~~~~~~~~~  315 (349)
                      ...|+.++.|
T Consensus        99 ~d~~~~~~~l  108 (138)
T 1ugk_A           99 FDRFSRDDII  108 (138)
T ss_dssp             ECSSCCCCCC
T ss_pred             CCCCCCCcEE
Confidence            8888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-21
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-13
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	9e-13
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-11
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-10
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	9e-09
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	8e-08
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-07
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-07
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-07
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	7e-07
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-04

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.7 bits (214), Expect = 2e-21
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 36  STASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
           S+ SS    P G L + +V AK +++   +  MDPYV+L       +++     G  P W
Sbjct: 2   SSGSS---GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58

Query: 96  NKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
           N+     + +G T +  +I+D+   T D+ +  A IP+    ++G      + +   + E
Sbjct: 59  NETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV--KDE 116

Query: 156 DKEGMINLVLSYT 168
           + +G I + LS+ 
Sbjct: 117 EYKGEIWVALSFK 129

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 44  NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLL 103
             VG L + V++A  +       K DP+  L +G+   +THT       P WNK     +
Sbjct: 3   KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPI 61

Query: 104 PQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKE-GMIN 162
                 + + ++DE      + +    IP+  S+  G+ +   + L  K  E    G+I 
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDGQPN--CYVLKNKDLEQAFKGVIY 118

Query: 163 LVLSY 167
           L +  
Sbjct: 119 LEMDL 123

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG 106
            +L ITV+ AKL +N        PYV + V     +T    +    P+W + +  ++   
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTP- 63

Query: 107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSV----MKGETHEDWFPLSG-KQGEDKEGMI 161
           V+ ++  ++   +   D L+  A + I  ++    MK E       L G K+  +  G +
Sbjct: 64  VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDL 123

Query: 162 NLVLSY 167
           ++ L  
Sbjct: 124 SICLDG 129

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 9e-13
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 47  GRLNITVVQAKLVKNYG---LVTKMDPYVRLRVGHCVYETHTDPSGGKFPR-WNKEVFCL 102
            +  + V++A  V       ++   DPYV L +                      E F  
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 103 LPQGVTS--IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGM 160
           +        + + + D      DE +  A   + SS+  GE  E  F  +       E  
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTV-SSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 161 INLVLS 166
           + +  S
Sbjct: 121 LEVASS 126

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 49  LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVT 108
           L + V +AK         K + YV L+V +    T      G  P W ++    + +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDL 58

Query: 109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE-THEDWFPLSGKQGEDKEGMINLVLSY 167
            + +E++++     D ++    IP+ +     E    +W  L  +       +       
Sbjct: 59  GLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICG----- 112

Query: 168 TVSFFFFLLLLE 179
           T    F  +LL+
Sbjct: 113 TKDPTFHRILLD 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKEVFCL 102
             L + V  AK +         DPYV+L++           +        P WN+     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 103 LPQGV--TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL-SGKQGE 155
           L +      + +EI+D    + ++ +      I  S ++    + WF L S ++GE
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI--SELQKAGVDGWFKLLSQEEGE 128

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHT--DPSGGKFPRWNKEVFC 101
            +L + ++QA  +    +    DPYV++ +       +ET          F         
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 102 LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
               G  ++ + +YD   F+  ++I   K+P+ ++V  G   E+W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM-NTVDFGHVTEEWRDL 140

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 9e-09
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 12/120 (10%)

Query: 48  RLNITVVQAK--LVKNYGLVTKMDPYVR-----LRVGHCVYETHTDPSGGKFPRWNKE-V 99
           RL + ++  +     N    + +DP V      +       +T    + G  PRW+ E  
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 100 FCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
           F +    +  +   + D  S + ++ I  + IP        +       L  K G+    
Sbjct: 65  FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP----WNSLKQGYRHVHLLSKNGDQHPS 120

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 8e-08
 Identities = 17/113 (15%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKE-VFC 101
            +L +T++ AK + +       +PYV++       + +   +        P+WN+  ++ 
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 102 LLPQGV---TSIYLEIYDECSFTMD--ELIAWAKIPIPSSVMKGETHEDWFPL 149
            + +       + + ++D+     +  E +    I + ++++  E H  W+ L
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH--WYKL 124

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 19/136 (13%)

Query: 47  GRLNITVVQAKLVKNYGLVTK-----------MDPYVRLRVGHCVYETHTDPSGGKFPRW 95
           G L I + +A  +K      +           +DPY+ L V                P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 96  NKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQG 154
           + E    +  G   I L ++ +     D+ +A   I     +  G    EDW  L     
Sbjct: 66  HDEFVTDVCNGRK-IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL----- 119

Query: 155 EDKEGMINLVLSYTVS 170
            + EG + +++  + S
Sbjct: 120 -EPEGKVYVIIDLSGS 134

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-----VYETHTDPSGGKFPRWNKEVFC 101
           G L +T+++A  +K   L    DPYV+  +          +T    +          VF 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
           + P+ V ++ L I   D      +E+I   ++   ++   G  H  W  +     +
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREH--WAEMLANPRK 133

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 24/126 (19%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--------------------HCVYETHTD 86
           G L I ++QA+ +         DP+V++ +                       V ++   
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 87  PSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
                    +  +  L+ +   ++ + ++D   F+ ++ +    I + SS    +    W
Sbjct: 78  EWNQTVIYKSISMEQLMKK---TLEVTVWDYDRFSSNDFLGEVLIDL-SSTSHLDNTPRW 133

Query: 147 FPLSGK 152
           +PL  +
Sbjct: 134 YPLKEQ 139

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKEVFCL 102
           G L + +++   +         DP+V+L +   + +     +        P +N+E F  
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 103 LPQ---GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
           +        S+ + ++D      ++ I   ++ I +    GE  + W+     + +
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK---GERLKHWYECLKNKDK 127

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH----CVYETHTDPSGGKFPRWNKE-VFC 101
           G+L + +++AK +K   +    DPYV++ +         +  T       P +N+   F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETH------------EDWF 147
           +  + +  + + +   D      ++ I    +   +S      H              W 
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY-NSTGAELRHWSDMLANPRRPIAQWH 143

Query: 148 PLSGKQGEDKEGMINL 163
            L  +  E+ + M+ +
Sbjct: 144 TLQVE--EEVDAMLAV 157

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTD----PSGGKFPRWNKEVFCL 102
             L + V++A+ +    +    DPYV++ + H                    +N+     
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 103 LPQ---GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
           +P       S+   + D    + +E+I    +   ++   G  H  W  +
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSGGGH--WKEI 121

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 47  GRLNITVVQAKLVKNYGLVTKMDPYVR---LRVGHCVYETHTDPSGGKFPRWNKEVFCLL 103
            +L + ++QA  +         DPYV+   L      ++T         P +N+     +
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSV 76

Query: 104 PQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED-WFPL 149
           P        ++  +YD   F+  +LI    +     + +       W  +
Sbjct: 77  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.92
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.89
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.79
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.79
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.74
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.71
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.71
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.71
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.69
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.58
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.46
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	96.62
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	96.26
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	95.71
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	93.13
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	89.66
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	89.56
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	88.21
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	83.25
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	83.09

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=5.6e-25  Score=184.28  Aligned_cols=131  Identities=25%  Similarity=0.387  Sum_probs=116.5

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCC
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECS  119 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~  119 (349)
                      .....+.|.|.|+|++|++|+..+..|++||||++++++...+|+++++++.||.|||+|.|.+......|.|+|||+|.
T Consensus         3 ~~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~   82 (136)
T d1wfja_           3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV   82 (136)
T ss_dssp             CCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred             CCCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence            45577899999999999999999999999999999999999999998876779999999999998877889999999999


Q ss_pred             CCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181         120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF  172 (349)
Q Consensus       120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~  172 (349)
                      +++|++||.+.|+|.+++..+.....|+.|...  .+..|+|+|+++|.|...
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~--~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD--EEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET--TEEEEEEEEEEEEEECCS
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCC--CccCEEEEEEEEEEeCCC
Confidence            999999999999999877777777889998632  346799999999998654

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.5e-23  Score=170.04  Aligned_cols=121  Identities=23%  Similarity=0.340  Sum_probs=106.1

Q ss_pred             CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCC
Q psy3181          44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMD  123 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skd  123 (349)
                      .+.|.|.|+|++|++|+.++..|++||||++.+++.+++|+++++ +.||.|||+|.|.+......|.|+|||++.+++|
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d   81 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPP   81 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCC-ceeEEEEEEEEEEEeccCceeEEEEEEccCCcCc
Confidence            467999999999999999999999999999999999999999877 5699999999999988778999999999999999


Q ss_pred             ceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEEE
Q psy3181         124 ELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSYT  168 (349)
Q Consensus       124 d~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~~  168 (349)
                      ++||++.++|.+ +..+.  .+|+.|..... .+..|+|+|++.|.
T Consensus        82 ~~lG~~~i~l~~-l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          82 DFLGKVAIPLLS-IRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EECCBCEEEGGG-CCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             ceEEEEEEEHHH-CCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            999999999996 44443  47998875433 35679999999875

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.84  E-value=1.3e-20  Score=158.24  Aligned_cols=120  Identities=24%  Similarity=0.415  Sum_probs=101.4

Q ss_pred             CcceEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCeEE-EEEecCCCCCCCccceEEEEEeccCCeEEE
Q psy3181          44 NPVGRLNITVVQAKLVKNYG-----------LVTKMDPYVRLRVGHCVY-ETHTDPSGGKFPRWNKEVFCLLPQGVTSIY  111 (349)
Q Consensus        44 ~~~G~L~V~Iv~ArnL~~~d-----------~~G~sDPYV~V~lg~~~~-kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~  111 (349)
                      ...|.|+|+|++|++|++.+           ..+.+||||+|.+++... +|++..+ +.||.|||+|.|.+.+. ..|.
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~~-~~l~   80 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE-CEEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEecC-CceE
Confidence            45799999999999998754           357799999999998664 6777665 56999999999999654 7899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCC-cceeeEEEccCCCCCCcceEEEEEEEEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQGEDKEGMINLVLSYTVSF  171 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g-~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~  171 (349)
                      |+|||++.+++|++||.+.|+|++++..+ ...+.|++|.+      .|+|++.+.++++.
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p------~G~v~l~v~~~~~~  135 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC------CcEEEEEEEEEeCC
Confidence            99999999999999999999999876654 45678999974      49999999998864

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=153.62  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=98.3

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecC
Q psy3181          46 VGRLNITVVQAKLVKNY---GLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDEC  118 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~---d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d  118 (349)
                      .++|+|+|++|+||+..   |..|++||||++.+++   .+.+|+++.+ +.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCcccCcEEEEEEECC
Confidence            47899999999999874   4468999999999974   6788998776 45999999999998765 568999999998


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      .. +|++||++.++|.+ +..+...+.||+|...    ..|+|++.+.+.|
T Consensus        81 ~~-~d~~lG~~~i~L~~-l~~~~~~~~~~~L~~~----~~g~i~~~l~~~~  125 (126)
T d1rlwa_          81 YV-MDETLGTATFTVSS-MKVGEKKEVPFIFNQV----TEMVLEMSLEVAS  125 (126)
T ss_dssp             SS-CCEEEEEEEEEGGG-SCTTCEEEEEEEETTT----EEEEEEEEEECCC
T ss_pred             CC-CCCeEEEEEEEHHH-ccCCCeEEEEEEccCC----CeEEEEEEEEEEe
Confidence            65 58999999999995 5566778899999743    4599999888765

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=151.32  Aligned_cols=123  Identities=20%  Similarity=0.280  Sum_probs=99.1

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181          45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE  124 (349)
Q Consensus        45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd  124 (349)
                      ..+.|.|+|++|++++..+..+++||||++.++++.++|+++++ +.||.|||.|.|.+.+. ..|.|+|||+|.+++|+
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~-~~l~~~V~d~d~~~~d~   81 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDV   81 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSS-CSSCEEEEEEEEEECTT-CEEEEEEEECCSSSCCE
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEe-cccEEEcceEEEEEEec-ceeEEEEEEccCCCCCc
Confidence            34899999999999999998899999999999999999999776 56999999999998654 68999999999999999


Q ss_pred             eeEEEEEeCCcccc--CCcceeeE--EEccC-CCCCCcceEEEEEEEEEE
Q psy3181         125 LIAWAKIPIPSSVM--KGETHEDW--FPLSG-KQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       125 ~LG~v~I~L~e~l~--~g~~~~~W--~~L~~-k~g~~~~GeI~L~L~~~p  169 (349)
                      +||++.++|.+++.  .+.....|  +.|.. +.+....|+|.|.|.+.+
T Consensus        82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            99999999987654  23333344  44433 334566799999887653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.3e-19  Score=150.51  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=91.2

Q ss_pred             CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEe
Q psy3181          43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIY  115 (349)
Q Consensus        43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~  115 (349)
                      ....+.|.|+|++|+||+.+|..|.+||||++.+     +..+.+|+++++ +.||.|||+|.|.+...  ...|.|+||
T Consensus        11 ~~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~   89 (132)
T d1a25a_          11 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIW   89 (132)
T ss_dssp             EESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEE
T ss_pred             EecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccccCCEEeEEEE
Confidence            3356899999999999999999999999999998     456789999876 55999999999998654  467999999


Q ss_pred             ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |+|.+++|++||.+.|+|.+ +..+. .+.||+|.+
T Consensus        90 d~d~~~~d~~iG~~~i~l~~-l~~~~-~~~W~~L~~  123 (132)
T d1a25a_          90 DWDLTSRNDFMGSLSFGISE-LQKAG-VDGWFKLLS  123 (132)
T ss_dssp             ECCSSSCCEEEEEEEEEHHH-HTTCC-EEEEEECBC
T ss_pred             ecCCCCCCcEeEEEEEeHHH-cCCCC-CCeEEECCC
Confidence            99999999999999999995 44443 578999975

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=6.6e-19  Score=146.47  Aligned_cols=117  Identities=19%  Similarity=0.272  Sum_probs=91.8

Q ss_pred             eEEEEEEEEeecCCC--CCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecC
Q psy3181          47 GRLNITVVQAKLVKN--YGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDEC  118 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~--~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d  118 (349)
                      ..|.|+|++|++|+.  .+..|++||||+|++     +....+|+++++++.||.|||+|.|.+... ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999975  456788999999998     357889999888777999999999987544 577999999999


Q ss_pred             CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEE
Q psy3181         119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSY  167 (349)
Q Consensus       119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~  167 (349)
                      .+++|++||++.|+|++ +..|   ..|++|....|.. ..+.|.+.+.+
T Consensus        84 ~~~~d~~iG~~~i~l~~-l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNS-LKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGG-BCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEec-cCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            99999999999999995 5544   3699997655533 34667776665

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.2e-19  Score=149.04  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             ccCccccccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC--
Q psy3181          32 AGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG--  106 (349)
Q Consensus        32 ~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--  106 (349)
                      .|+..++ +.+....+.|.|+|++|+||+..+..|.+||||++.+.   ..+++|+++++ +.||.|||+|.|.+...  
T Consensus         4 ~G~l~~s-l~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~   81 (130)
T d1dqva1           4 CGRISFA-LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAEL   81 (130)
T ss_dssp             SCEEEEE-EECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGG
T ss_pred             cEEEEEE-EEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHc
Confidence            3544333 77889999999999999999999999999999999984   45789999876 55999999999998653  


Q ss_pred             -CeEEEEEEeecCCCCCCceeEEEEEeCCcccc-CCcceeeEEEccC
Q psy3181         107 -VTSIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSG  151 (349)
Q Consensus       107 -~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~-~g~~~~~W~~L~~  151 (349)
                       ...|.|+|||++.+++|++||++.|++...+. .....+.|++|..
T Consensus        82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence             46799999999999999999999998764443 3334557999974

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.3e-19  Score=150.18  Aligned_cols=110  Identities=21%  Similarity=0.333  Sum_probs=96.0

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE  113 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l---g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~  113 (349)
                      +.+....+.|.|+|++|+||+.++..|.+||||++.+   +....+|+++++ +.||.|||+|.|.+...   ...|.|+
T Consensus        27 l~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~  105 (143)
T d1rsya_          27 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMA  105 (143)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEE
T ss_pred             EEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEE
Confidence            6678889999999999999999999999999999998   456789998776 55999999999998643   5789999


Q ss_pred             EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181         114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG  151 (349)
Q Consensus       114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~  151 (349)
                      |||++.++++++||++.|+|.+ +..+...++||+|.+
T Consensus       106 V~d~d~~~~~~~iG~~~i~L~~-~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         106 VYDFDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGG-CCCSSCEEEEEECBC
T ss_pred             EEEcCCCCCCcEEEEEEEEchh-ccCCCCCccEEeCCC
Confidence            9999999999999999999995 555666789999964

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.8e-19  Score=149.64  Aligned_cols=105  Identities=19%  Similarity=0.322  Sum_probs=87.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eEEEEEecCCCCCCCccceEEEEEe-cc---CC
Q psy3181          46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH--------------CVYETHTDPSGGKFPRWNKEVFCLL-PQ---GV  107 (349)
Q Consensus        46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~--------------~~~kTkvvk~~~~nP~WnEtF~F~V-~~---~~  107 (349)
                      .|.|.|+|++|+||+.++..|.+||||++++..              .+.+|+++++ +.||.|||+|.|.+ ..   ..
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeecccccCC
Confidence            589999999999999999999999999999842              1246777666 45999999999984 32   25


Q ss_pred             eEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         108 TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      ..|.|+|||+|.+++|++||++.|+|.++ ..+...+.||+|.++
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l-~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVLIDLSST-SHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSC-GGGTTCCEEEECBCC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEEEEhHHc-CCCCCceEEEECcCc
Confidence            78999999999999999999999999964 444557899999865

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.1e-18  Score=141.05  Aligned_cols=99  Identities=20%  Similarity=0.354  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181          47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI  126 (349)
Q Consensus        47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L  126 (349)
                      +.|.|+|++|++|+++|   ++||||++++++.+.+|++++ ++ ||.|||+|.|.+......|.|+|||++.. +|++|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~-nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~l   75 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GS-QPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMV   75 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SS-SCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CC-CCeEEEEEEEeeccccceEEEEEEeCCCc-CCcce
Confidence            57999999999999977   479999999999999998875 34 99999999999988888999999999976 49999


Q ss_pred             EEEEEeCCccccCC-cceeeEEEccC
Q psy3181         127 AWAKIPIPSSVMKG-ETHEDWFPLSG  151 (349)
Q Consensus       127 G~v~I~L~e~l~~g-~~~~~W~~L~~  151 (349)
                      |++.|+|++++..+ ....+||+|..
T Consensus        76 G~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          76 GTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEEEEehhhccCCCCCCCeeEECCc
Confidence            99999999766533 34568999964

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=137.58  Aligned_cols=109  Identities=16%  Similarity=0.269  Sum_probs=86.6

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEE-eccC---CeE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTS  109 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~  109 (349)
                      ++.+....+.|.|+|++|+||+..+..+.+||||+|.+.     ....+|+++++ +.||.|||+|.|. +...   ...
T Consensus         6 ~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l~~~~   84 (125)
T d2bwqa1           6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERM   84 (125)
T ss_dssp             EEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCE
T ss_pred             EEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhcCCCE
Confidence            366788889999999999999999999999999999982     35688999876 5699999999997 4432   467


Q ss_pred             EEEEEeecCCCC--CCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         110 IYLEIYDECSFT--MDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       110 L~I~V~D~d~~s--kdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |.|+|||.+.++  ++++||++.|+|.+....+  ..+||+|+
T Consensus        85 L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~--~~~Wy~L~  125 (125)
T d2bwqa1          85 LEITLWDQARVREEESEFLGEILIELETALLDD--EPHWYKLQ  125 (125)
T ss_dssp             EEEEEEEC-------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred             EEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC--CCEEEeCc
Confidence            999999999764  4569999999999655444  35799984

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.3e-17  Score=136.03  Aligned_cols=107  Identities=16%  Similarity=0.264  Sum_probs=89.6

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|.|+|++|+||+..+..+.+||||++++.     ..+.+|+++++ +.||.|||+|.|.++..   ...|.
T Consensus         8 l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~   86 (137)
T d2cm5a1           8 LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLD   86 (137)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEE
Confidence            67788899999999999999999999999999999972     34678988876 46999999999998654   47899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |.|||.+.++++++||++.+++... .  .....|+.|.
T Consensus        87 v~v~~~~~~~~~~~iG~~~i~l~~~-~--~~~~~W~~l~  122 (137)
T d2cm5a1          87 ISVWDYDIGKSNDYIGGCQLGISAK-G--ERLKHWYECL  122 (137)
T ss_dssp             EEEEECCSSSCCEEEEEEEEETTCC-H--HHHHHHHHHH
T ss_pred             EEeeeCCCCCCCCEEEEEEeCcccc-C--cchhhhhhHh
Confidence            9999999999999999999999842 2  2234576654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.8e-17  Score=138.61  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181          39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GH---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI  110 (349)
Q Consensus        39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L  110 (349)
                      |+.+.+..+.|.|+|++|+||+.++..+.+||||++.+  +.   .+.+|+++++ +.||.|||+|.|.++..   ...|
T Consensus         7 sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l   85 (138)
T d1w15a_           7 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISV   85 (138)
T ss_dssp             EEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEE
T ss_pred             EEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEE
Confidence            37788889999999999999999999999999999998  22   3457887766 56999999999998653   4679


Q ss_pred             EEEEeecCCCCCCceeEEEEEeCCc
Q psy3181         111 YLEIYDECSFTMDELIAWAKIPIPS  135 (349)
Q Consensus       111 ~I~V~D~d~~skdd~LG~v~I~L~e  135 (349)
                      .|+|||.|.++++++||++.|++..
T Consensus        86 ~i~v~d~~~~~~~~~iG~~~i~l~~  110 (138)
T d1w15a_          86 EFLVLDSERGSRNEVIGRLVLGATA  110 (138)
T ss_dssp             EEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             EEEEEeCCCCCCCCEEEEEEEcchh
Confidence            9999999999999999999999984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=137.71  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=90.2

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYL  112 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I  112 (349)
                      +.+....+.|.|+|++|++|+.   .|.+||||++.+.    ....+|+++++ +.||+|||+|.|.+...   ...|.|
T Consensus        19 l~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~   94 (138)
T d1wfma_          19 LDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTL   94 (138)
T ss_dssp             EEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEE
T ss_pred             EEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhccceEEEE
Confidence            5567788999999999999953   4678999999984    23577888766 55999999999998653   578999


Q ss_pred             EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181         113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK  152 (349)
Q Consensus       113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k  152 (349)
                      +|||++.++++++||++.|+|.+ +..+...+.|+.|.++
T Consensus        95 ~V~d~~~~~~~~~iG~~~i~L~~-l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          95 TLRTCDRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTS  133 (138)
T ss_dssp             EEEECCSSCTTSCSEEEEEESSS-SSSCTTCCEEEECCCC
T ss_pred             EEeeecccccceeeeEEEEEhHH-ccCCCCceEeEeCCCC
Confidence            99999999999999999999996 4545557899999865

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7.3e-17  Score=137.88  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=91.7

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|+||+..+..+.+||||++.+.  +   ...+|++.++ +.||+|||+|.|.++..   ...|.
T Consensus        18 l~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~   96 (157)
T d1uowa_          18 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVV   96 (157)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEE
T ss_pred             EEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEE
Confidence            77788899999999999999999999999999999984  2   2457887765 56999999999998754   46899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCcc----------cc-CCcceeeEEEccC
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSS----------VM-KGETHEDWFPLSG  151 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~----------l~-~g~~~~~W~~L~~  151 (349)
                      |+|||.+.++++++||++.|++...          +. .+....+|+.|..
T Consensus        97 i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_          97 VTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             EEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999999999999999999742          11 2333568998874

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=133.97  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCC-CCcEEEEEE---CCeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTK-MDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~-sDPYV~V~l---g~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~  111 (349)
                      +.+....+.|.|+|++|+||+.++..+. +||||++.+   ....++|+++++ +.||.|||+|.|. ++..   ...|+
T Consensus        15 l~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~   93 (138)
T d1ugka_          15 LEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALH   93 (138)
T ss_dssp             EEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEE
T ss_pred             EEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHcccceEE
Confidence            6778888999999999999999887654 799999998   456789998876 5599999999997 4432   46899


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |+|||.|.+++|++||++.|+|.++.........|..+.
T Consensus        94 ~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          94 FTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             EEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            999999999999999999999996533332244555543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.2e-17  Score=135.45  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=89.1

Q ss_pred             cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181          40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY  111 (349)
Q Consensus        40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~  111 (349)
                      +.+....|.|.|+|++|+||+..+..|.+||||+|.+..     .+.+|+++++ +.||.|||+|.|.++..   ...|.
T Consensus        13 l~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~   91 (145)
T d1dqva2          13 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLS   91 (145)
T ss_dssp             EEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCC
T ss_pred             EEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEE
Confidence            778889999999999999999999999999999999853     2578888776 56999999999988643   46799


Q ss_pred             EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181         112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS  150 (349)
Q Consensus       112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~  150 (349)
                      |.|||++.++++++||++.|+++.....  ...+|+.|.
T Consensus        92 v~v~d~~~~~~~~~iG~~~i~l~~~~~~--~~~~W~~l~  128 (145)
T d1dqva2          92 IAVVDYDCIGHNEVIGVCRVGPEAADPH--GREHWAEML  128 (145)
T ss_dssp             CEEEECCSSSCCEEEEECCCSSCTTCHH--HHHHHHTSS
T ss_pred             EEEEecCCCCCCcEEEEEEECchHcCch--hhHHHHHHH
Confidence            9999999999999999999999843211  134566654

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=6.1e-15  Score=121.53  Aligned_cols=109  Identities=11%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCC
Q psy3181          49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-----VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMD  123 (349)
Q Consensus        49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-----~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skd  123 (349)
                      |+|+|....--+.....+.+||||+|++.+.     ..+|++.++ +.||+|||+|.|.+.+. ..|.|.|||+|    +
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~~-~~l~i~V~d~d----d   78 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYEG-RVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCTT-CEEEEEEEEET----T
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEccc-cEEEEEEEEcc----c
Confidence            4555544432233455688999999999532     345666665 56999999999999764 78999999987    7


Q ss_pred             ceeEEEEEeCCcccc----CCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181         124 ELIAWAKIPIPSSVM----KGETHEDWFPLSGKQGEDKEGMINLVLSYTV  169 (349)
Q Consensus       124 d~LG~v~I~L~e~l~----~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p  169 (349)
                      +++|.+.+.+.++..    .+...+.|++|..      .|.|++++.|.+
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~------~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCCC------CEEEEEEEEEec
Confidence            899999999986532    4667889999963      499999999864

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-13  Score=110.45  Aligned_cols=107  Identities=18%  Similarity=0.320  Sum_probs=77.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEEEe-cCCCCCCCccceE-EEE-EeccC-CeEEEEEEeec
Q psy3181          48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVG------HCVYETHT-DPSGGKFPRWNKE-VFC-LLPQG-VTSIYLEIYDE  117 (349)
Q Consensus        48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg------~~~~kTkv-vk~~~~nP~WnEt-F~F-~V~~~-~~~L~I~V~D~  117 (349)
                      +|.|+|++|++|+..    +.||||+|++.      ..+.+|++ +++++.||.|||. |.| .+... ...|.|+|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999865    47999999982      23455554 4566789999976 444 34333 46899999998


Q ss_pred             CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEE
Q psy3181         118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLS  166 (349)
Q Consensus       118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~  166 (349)
                      |    |++||++.++|+ .+..|.   +|++|.++.+.. ..+.|.+.+.
T Consensus        78 d----~~~lG~~~ipl~-~l~~Gy---R~vpL~~~~g~~l~~~~L~v~i~  119 (122)
T d2zkmx2          78 G----NKFLGHRIIPIN-ALNSGY---HHLCLHSESNMPLTMPALFIFLE  119 (122)
T ss_dssp             T----TEEEEEEEEEGG-GBCCEE---EEEEEECTTCCEEEEEEEEEEEE
T ss_pred             C----CCEEEEEEEEcc-cCcCCc---eEEEccCCCcCCCCCceEEEEEE
Confidence            6    799999999999 576665   788887665432 2334444443

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.62  E-value=0.00069  Score=54.11  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             CCcceEEEEeeeeeeccccCc-----CceeEEecee-ec---------CChhhHhhhhhhh---heeeeeeeeecccccc
Q psy3181         250 NPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR---------SSRSEQEVCSCKF---LALIKLDILDTYLFSA  311 (349)
Q Consensus       250 ~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  311 (349)
                      .|.|.|.|+|++|.-..+...     |||.|..|.- ++         ||. |||.....+   ...+.++|+|...|+.
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~-Wne~f~f~v~~~~~~L~v~V~d~d~~~~   85 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPE-WNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCE-EEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEE-EeeEEEEEEcCccceEEEEEEEecCCCC
Confidence            578999999999999988754     9999998754 43         888 999776554   3447899999999998


Q ss_pred             cCccc
Q psy3181         312 NKPIP  316 (349)
Q Consensus       312 ~~~~~  316 (349)
                      ++.|-
T Consensus        86 d~~iG   90 (136)
T d1wfja_          86 DDAVG   90 (136)
T ss_dssp             TCCSE
T ss_pred             CCEEE
Confidence            88763

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0012  Score=53.00  Aligned_cols=62  Identities=10%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             ceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh--heeeeeeeeecccccccCcc
Q psy3181         253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSANKPI  315 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  315 (349)
                      ++|+|||++|....+...     ||+.|.+|.- ++        ||. |||.....+  -..+.++|+|...|+.|+.|
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPK-WKQPLTVIVTPVSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCE-EEEEEEEEECTTCEEEEEEEECCSSSCCEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEE-EcceEEEEEEecceeEEEEEEccCCCCCceE
Confidence            899999999996655333     9999999876 65        898 998665444  66789999999999988765

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0031  Score=49.53  Aligned_cols=64  Identities=13%  Similarity=0.128  Sum_probs=49.8

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccC
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANK  313 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  313 (349)
                      +.|.|.|+|++|.-......     |||.+.+|.. ++        ||. |||-....+   -..+.++|+|...|+.++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~-wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPE-WNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCC-CCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEE-EEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            45999999999995554333     8999999876 65        788 998765554   456889999998898887


Q ss_pred             cc
Q psy3181         314 PI  315 (349)
Q Consensus       314 ~~  315 (349)
                      .|
T Consensus        83 ~l   84 (126)
T d2ep6a1          83 FL   84 (126)
T ss_dssp             EC
T ss_pred             eE
Confidence            65

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=93.13  E-value=0.019  Score=45.65  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=48.4

Q ss_pred             CcceEEEEeeeeeecccc--------------C-c-CceeEEecee-ec---------CChhhHhhhhhhh--heeeeee
Q psy3181         251 PVGRLNITVVQILSIGRY--------------L-V-PTYQIVSGAY-YR---------SSRSEQEVCSCKF--LALIKLD  302 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~--------------~-~-~~~~~~~~~~-~~---------~~~~~~~~~~~~~--~~~~~~~  302 (349)
                      -+|.|.|+|++|.-.+..              + + |||.|.+|.. +.         ||. |||-....+  ...+.++
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~-Wne~f~f~v~~~~~l~i~   82 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA-WHDEFVTDVCNGRKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCE-EEEEEEEEEEEECEEEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCcc-CccEEEEEEecCCceEEE
Confidence            469999999999766432              1 2 9999999765 43         677 998655444  5568889


Q ss_pred             eeecccccccCcc
Q psy3181         303 ILDTYLFSANKPI  315 (349)
Q Consensus       303 ~~~~~~~~~~~~~  315 (349)
                      |+|...|+.++.|
T Consensus        83 V~d~~~~~~d~~i   95 (136)
T d1gmia_          83 VFHDAPIGYDDFV   95 (136)
T ss_dssp             EEECCSSSSCEEE
T ss_pred             EEEecCCCCceeE
Confidence            9999999888765

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.56  E-value=0.12  Score=40.19  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             CcceEEEEeeeeeeccccCc-----CceeEEec---ee-ec--------CChhhHhhhhhhh------heeeeeeeeecc
Q psy3181         251 PVGRLNITVVQILSIGRYLV-----PTYQIVSG---AY-YR--------SSRSEQEVCSCKF------LALIKLDILDTY  307 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~---~~-~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~  307 (349)
                      .+|+|.|+|+++.-......     ||+++.++   .. ++        ||. |||.....+      -..+.+.|+|..
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~-wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI-FNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCE-EEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCee-eeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            67999999999976543322     89999873   21 43        787 998765443      234789999999


Q ss_pred             cccccCccc
Q psy3181         308 LFSANKPIP  316 (349)
Q Consensus       308 ~~~~~~~~~  316 (349)
                      .|..++.|-
T Consensus        95 ~~~~d~~iG  103 (130)
T d1dqva1          95 RFSRHDLIG  103 (130)
T ss_dssp             SSSCCCEEE
T ss_pred             CCCCCceEE
Confidence            999888664

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.098  Score=40.15  Aligned_cols=62  Identities=8%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             CcceEEEEeeeeeeccccC------c--CceeEEecee----ec--------CChhhHhhhhhhh----heeeeeeeeec
Q psy3181         251 PVGRLNITVVQILSIGRYL------V--PTYQIVSGAY----YR--------SSRSEQEVCSCKF----LALIKLDILDT  306 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~------~--~~~~~~~~~~----~~--------~~~~~~~~~~~~~----~~~~~~~~~~~  306 (349)
                      .+++|.|+|+++.-+.+..      -  ||+.+..|-.    ++        ||. |||-....+    .+.+.++|+|.
T Consensus         1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~-wne~f~f~i~~~~~~~L~v~V~d~   79 (126)
T d1rlwa_           1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPV-WNETFEFILDPNQENVLEITLMDA   79 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCE-EEEEEEEEECTTSCCEEEEEEEEC
T ss_pred             CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccce-eceeeeecccCcccCcEEEEEEEC
Confidence            3689999999999987643      2  8999998631    32        788 998655443    46788999997


Q ss_pred             ccccccCc
Q psy3181         307 YLFSANKP  314 (349)
Q Consensus       307 ~~~~~~~~  314 (349)
                      -.++ ++.
T Consensus        80 d~~~-d~~   86 (126)
T d1rlwa_          80 NYVM-DET   86 (126)
T ss_dssp             CSSC-CEE
T ss_pred             CCCC-CCe
Confidence            6553 443

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.25  E-value=0.31  Score=38.13  Aligned_cols=57  Identities=7%  Similarity=-0.087  Sum_probs=44.3

Q ss_pred             ceEEEEeeeeeeccccCc--CceeEEecee-ec-------CChhhHhhhhhhh---heeeeeeeeeccccc
Q psy3181         253 GRLNITVVQILSIGRYLV--PTYQIVSGAY-YR-------SSRSEQEVCSCKF---LALIKLDILDTYLFS  310 (349)
Q Consensus       253 g~lsiti~~~~~~~~~~~--~~~~~~~~~~-~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  310 (349)
                      +.|.|+|+.|...+.-+-  |||.|..|-. +.       ||. |||.+.-.+   -..+.++++|.-.++
T Consensus         2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k~~nP~-Wne~f~f~v~~~~~~L~v~V~d~~~~~   71 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPS-WEQDFMFEINRLDLGLTVEVWNKGLIW   71 (128)
T ss_dssp             EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEESSSCE-EEEEEEEEECCCSSEEEEEEEECCSSC
T ss_pred             eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEecCCCCe-EEEEEEEeeccccceEEEEEEeCCCcC
Confidence            679999999998777666  9999999866 44       888 998776555   345789999875543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.62  Score=36.22  Aligned_cols=65  Identities=12%  Similarity=-0.039  Sum_probs=47.1

Q ss_pred             CcceEEEEeeeeeeccccCc--CceeEEec----ee-ec--------CChhhHhhhhhhh------heeeeeeeeecccc
Q psy3181         251 PVGRLNITVVQILSIGRYLV--PTYQIVSG----AY-YR--------SSRSEQEVCSCKF------LALIKLDILDTYLF  309 (349)
Q Consensus       251 ~~g~lsiti~~~~~~~~~~~--~~~~~~~~----~~-~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~~~  309 (349)
                      ..++|.|+|+++.-....|.  ||+++.+.    .. ++        ||- |||.+...+      -..+.+.|+|...|
T Consensus        24 ~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~-wne~f~f~v~~~~l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT-WEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE-CSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceeeeEECCCCCce-EeeeEEEEeeehhccceEEEEEEeeeccc
Confidence            56899999999976655555  89998772    11 22        777 998766654      24577888999889


Q ss_pred             cccCccc
Q psy3181         310 SANKPIP  316 (349)
Q Consensus       310 ~~~~~~~  316 (349)
                      +.++.|-
T Consensus       103 ~~~~~iG  109 (138)
T d1wfma_         103 SRHSVAG  109 (138)
T ss_dssp             CTTSCSE
T ss_pred             ccceeee
Confidence            9888653