Psyllid ID: psy318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MDGTTSDSSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTSCVNL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccEEEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHHHHcEEEEcccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHccccccccccEEEEcccEEEEccccccEEEEEHHHHHcccccHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEcccHHHHcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccEEEEEccccccHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccEEEEcccEHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHccccHHHHHHHHHHHHHHHcccEEEEccccccHHcccccccccEEEEccccHHHHHHHHHHHHHHHccccccccccEEEEEcEEEEEEcccccEEEEcHHHHccccccHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHcccccccccHHHHHHHHHHHcccccHHccccccccEEEEEHHcccc
Coil and Loop (DISEMBL)
mdgttsdsslpskqyyeklsnneiqedKHQEQIVKQLDNVYVSIKnyapqsksmFSFFQdkvkqpkglyiygavgggkTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILArdkaksydpgvpnrldvmKEEEEKEREREREREREREREREREReaksydpippvandiisktwlicfdefqvtdIADAMILKRLFTELFQLGVVVVAtsnrapddlyknglqrsnflpfIDVLKTYCDVASLNSNIDYRSLKanaeesstktYFVKNFANEKKLHGIFKLLCsqendivrpRVITIMGRNVTFNKTCGQILEATFDElcsrdlgssdylHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYdnnirlvissdvplnklfsneavidthSDEHRMLMDDlnikandgtdanlksnIFTVGTSCVNL
Flexible Loop (DISEMBL)
mdgttsdsslpskqYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKilardkaksydpgvpnrldvmkeeeekerererererererererereaksydpippvanDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSnrapddlyknglqrsnFLPFIDVLKTYCDVASLNSNIDYRSLkanaeesstkTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISsdvplnklfSNEAVIDTHSDEHRMLMDDLNIKandgtdanlksniftvgtscvnl
Low Complexity Region (SEG)
MDGTTSDSSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMkeeeekerererererererererereAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTSCVNL
Disordered region (IsUnstruct)
********************************IVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILAR****************************************************PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA******TKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS***RMLMDDLNIK*******NLKSNIFTVGT*****
Disordered Region (DISOPRED)
************KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSK********KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKI**********PGVPNRLDVMKEEEEKERERERERERER**********KSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQ******PRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDT****************************FTVGTSCVNL
Disordered Region (DISEMBL)
***********SKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM*****************************SYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTSCVNL
Disordered Region (DISPRO)
*******SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARD****************KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTSCVNL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGTTSDSSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTSCVNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
P46441	464	Putative ATPase N2B OS=Ha	N/A	N/A	0.858	0.810	0.460	1e-106
Q3V384	480	Lactation elevated protei	yes	N/A	0.826	0.754	0.451	2e-98
Q8WV93	481	Lactation elevated protei	yes	N/A	0.826	0.752	0.434	3e-95
Q32PX9	480	Lactation elevated protei	yes	N/A	0.826	0.754	0.441	7e-95
Q5TYS0	503	Lactation elevated protei	no	N/A	0.710	0.618	0.447	1e-84
O42895	454	Uncharacterized protein C	yes	N/A	0.776	0.748	0.315	4e-54
P64612	375	Uncharacterized protein Y	N/A	N/A	0.748	0.874	0.297	1e-50
P64613	375	Uncharacterized protein Y	N/A	N/A	0.748	0.874	0.297	1e-50
P32317	509	Protein AFG1 OS=Saccharom	yes	N/A	0.785	0.675	0.308	2e-48

>sp|P46441|N2B_HAEIR Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/441 (46%), Positives = 278/441 (63%), Gaps = 65/441 (14%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAP-----QSKSMFSFFQDKVKQ- 64
           P + Y +++ + E+  DK Q++  ++L+++Y ++KNY P     ++ S   FF   +K+ 
Sbjct: 37  PMQAYEQRIESKELLPDKVQKKTTQELEDLYNTLKNYQPKPVRVETSSGGGFFGRFMKKE 96

Query: 65  -------------PKGLYIYGAVGGGKTMLMDIFYESCE-TKQKQRVHFNKFMLDVHAKI 110
                        PKG+YIYG+VGGGKT LMD+FY  C+   +KQRVHFN FM  VH  I
Sbjct: 97  QSAPKIELLNTTAPKGMYIYGSVGGGKTTLMDMFYSCCDDIPKKQRVHFNSFMSKVHGLI 156

Query: 111 HEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPI 170
           H+VK                        +E   ++R    E+              +DP 
Sbjct: 157 HKVK------------------------QERGPQDRAFNSEK-----------PLPFDPT 181

Query: 171 PPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGL 230
            PVA  I +++WLICFDEFQVTDIADAMILK LFT LF  G+V +ATSNR P+DLYKNGL
Sbjct: 182 LPVAEMIANESWLICFDEFQVTDIADAMILKSLFTHLFNEGIVCIATSNRHPNDLYKNGL 241

Query: 231 QRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEK-KLHGIFKL 289
           QRSNF+PFI VL   C+VA+++S +DYR +     +S    YFV    + K ++  +FK+
Sbjct: 242 QRSNFIPFIGVLLNRCNVAAMDSGVDYRRIA----QSGDTNYFVTTQTDAKSQMERMFKI 297

Query: 290 LCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVII 349
           LCSQENDI+RPR IT  GR++TF +TCGQ+L++ F+ELC+R LG SDY+ I Q FHTV+I
Sbjct: 298 LCSQENDIIRPRTITHFGRDLTFQRTCGQVLDSNFEELCNRPLGGSDYIQIGQFFHTVLI 357

Query: 350 RNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLM 409
            +VPQL + L+SQ RRFITLID LYDN +R+VIS++VPL++LFS        +DE RMLM
Sbjct: 358 HDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVISAEVPLDQLFSFTDKPKDLADEQRMLM 417

Query: 410 DDLNIKANDGTDANLKSNIFT 430
           DDL +      D +  +++FT
Sbjct: 418 DDLKLG-----DTDTSASVFT 433

Haematobia irritans (taxid: 7368)

>sp|Q3V384|LACE1_MOUSE Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/405 (45%), Positives = 256/405 (63%), Gaps = 43/405 (10%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYI 70
           P   Y   + + E++ED+HQ ++V+ L  +   +K Y+ +   +FS    + K PKGLY+
Sbjct: 75  PLDHYDFLIKSQELREDEHQRRVVQCLQKLQEDLKGYSIEEGGLFSKLFSRNKPPKGLYV 134

Query: 71  YGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVP 130
           YG VG GKTM+MD+FY   ETK+K+RVHF+ FMLDVH +IH +K+ L + KA        
Sbjct: 135 YGDVGTGKTMVMDMFYAYVETKRKKRVHFHGFMLDVHRRIHHLKQSLPKRKAGFM----- 189

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQ 190
                                            AKSYDPI P+A +I  +T L+CFDEFQ
Sbjct: 190 ---------------------------------AKSYDPIAPIAEEISQETSLLCFDEFQ 216

Query: 191 VTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250
           VTDIADAMILK+LF  LF+ GVVVVATSNR P+DLYKNGLQR+NF+PFI VLK YCD   
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCDTLQ 276

Query: 251 LNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHGIFKLLCSQENDIVRPRVITIMGRN 309
           L+S +DYR  +      + K Y++ + A+ E  +  +F  L  ++ND+  PR++ + GR 
Sbjct: 277 LDSGVDYRKREL---APAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKVQGRE 333

Query: 310 VTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITL 369
           +  NK CG + + TF+ELC R LG+SDYL + + F TVIIRN+PQ ++  R+Q+RRFITL
Sbjct: 334 LRLNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITL 393

Query: 370 IDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNI 414
           ID  YD  +R++ S+  P++ LF ++   D+ SD+ R+LMDDL +
Sbjct: 394 IDNFYDFKVRIICSASAPISSLFLHQHQ-DSESDQSRILMDDLGL 437

Mus musculus (taxid: 10090)

>sp|Q8WV93|LACE1_HUMAN Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2

 Score =  349 bits (895), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 176/405 (43%), Positives = 255/405 (62%), Gaps = 43/405 (10%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYI 70
           P   Y   +  +E+++D+HQ ++++ L  ++  +K Y  +++ +FS    + K P+GLY+
Sbjct: 75  PLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYNIEAEGLFSKLFSRSKPPRGLYV 134

Query: 71  YGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVP 130
           YG VG GKTM+MD+FY   E K+K+RVHF+ FMLDVH +IH +K+ L + K     PG  
Sbjct: 135 YGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHKRIHRLKQSLPKRK-----PGF- 188

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQ 190
                                            AKSYDPI P+A +I  +  L+CFDEFQ
Sbjct: 189 --------------------------------MAKSYDPIAPIAEEISEEACLLCFDEFQ 216

Query: 191 VTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250
           VTDIADAMILK+LF  LF+ GVVVVATSNR P+DLYKNGLQR+NF+PFI VLK YC+   
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query: 251 LNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHGIFKLLCSQENDIVRPRVITIMGRN 309
           L+S IDYR  +  A   + K Y++ + A+ E  +  +F  L  ++ND+ RPR++ + GR 
Sbjct: 277 LDSGIDYRKRELPA---AGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRE 333

Query: 310 VTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITL 369
           +  NK CG + + TF+ELC R LG+SDYL + + F T+ +RN+PQ  +  R+Q RRFITL
Sbjct: 334 LRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITL 393

Query: 370 IDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNI 414
           ID  YD  +R++ S+  P++ LF ++   D+  ++ R+LMDDL +
Sbjct: 394 IDNFYDLKVRIICSASTPISSLFLHQHH-DSELEQSRILMDDLGL 437

Homo sapiens (taxid: 9606)

>sp|Q32PX9|LACE1_RAT Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1

 Score =  348 bits (892), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 179/405 (44%), Positives = 248/405 (61%), Gaps = 43/405 (10%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYI 70
           P   Y   +   E++ D+HQ ++V+ L  +   +K Y  +   +FS    + K PKGLY+
Sbjct: 75  PLAHYDFLIKAQELKNDEHQRRVVQCLQKLQEDLKGYNIEEGGLFSKLFSRNKPPKGLYV 134

Query: 71  YGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVP 130
           YG VG GKTM+MD+FYE  E K K+RVHF+ FMLDVH +IH +K+ L + K         
Sbjct: 135 YGDVGTGKTMVMDMFYEYVEVKSKRRVHFHGFMLDVHKRIHRLKQSLPKRKVGFM----- 189

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQ 190
                                            AKSYDPI P+A +I  +  L+CFDEFQ
Sbjct: 190 ---------------------------------AKSYDPIAPIAEEISQEASLLCFDEFQ 216

Query: 191 VTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250
           VTDIADAMILK+LF  LF+ GVVVVATSNR P+DLYKNGLQR+NF+PFI VLK YC+   
Sbjct: 217 VTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQ 276

Query: 251 LNSNIDYRSLKANAEESSTKTYFVKNFANEKK-LHGIFKLLCSQENDIVRPRVITIMGRN 309
           L+S +DYR  +      + K Y++ + A+    +  +F  L  ++ND+  PR++ + GR 
Sbjct: 277 LDSGVDYRKRELT---PAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKVQGRE 333

Query: 310 VTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITL 369
           +  NK CG + + TF+ELC R LG+SDYL + + F TVIIRN+PQ ++  R+Q RRFITL
Sbjct: 334 LRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITL 393

Query: 370 IDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNI 414
           ID  YD  +R++ S+ VP++ LF  +   D+ SD+ R+LMDDL +
Sbjct: 394 IDNFYDFKVRIICSASVPISSLFVYQHQ-DSESDQSRVLMDDLGL 437

Rattus norvegicus (taxid: 10116)

>sp|Q5TYS0|LCE1B_DANRE Lactation elevated protein 1 homolog B OS=Danio rerio GN=lace1b PE=2 SV=1

 Score =  314 bits (804), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/355 (44%), Positives = 224/355 (63%), Gaps = 44/355 (12%)

Query: 61  KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARD 120
           K   P+G YIYG VG GKTMLMD+FY   E ++K+RVHFN FMLDVH +IH++K+ L   
Sbjct: 148 KPHPPQGYYIYGNVGTGKTMLMDLFYSFVENRRKKRVHFNGFMLDVHRRIHKLKQSL--- 204

Query: 121 KAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISK 180
                    P R                           R  +   YDPI PVA +I  +
Sbjct: 205 ---------PKR---------------------------RIGKMTMYDPIFPVAMEIAEE 228

Query: 181 TWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFID 240
           T LICFDEFQV DIADAMILK+LF  LF+ GVVVVATSNR P++LYKNGLQR+ F+PFI 
Sbjct: 229 TCLICFDEFQVVDIADAMILKQLFEGLFKCGVVVVATSNRPPEELYKNGLQRAAFVPFIG 288

Query: 241 VLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHGIFKLLCSQENDIVR 299
           VLK YC + SL++ ID+R+ +    + + + Y++ +  + E  ++ +F+ L  ++ND+ R
Sbjct: 289 VLKEYCRIVSLDTGIDFRTREM---KPAGRLYYISSEPDAENAVNALFEELAFRQNDVTR 345

Query: 300 PRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKL 359
           PRV+ + GR VT ++TCG I + +F ELC + LG+ DYL I + F TVIIRNVP L + +
Sbjct: 346 PRVLNVQGREVTLSRTCGTIADCSFQELCEQPLGAGDYLEIARCFDTVIIRNVPYLQLGM 405

Query: 360 RSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNI 414
           + Q+RRF TLID  YD  +R+V+ +D PL++L  ++  +       R+++D+L +
Sbjct: 406 KDQARRFTTLIDNFYDQKVRVVMLADAPLDRLL-DQGQMTGEEARDRLMLDELGL 459

Danio rerio (taxid: 7955)

>sp|O42895|YBQ2_SCHPO Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.02c PE=3 SV=1

 Score =  212 bits (540), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/421 (31%), Positives = 210/421 (49%), Gaps = 81/421 (19%)

Query: 5   TSDSSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYA---------PQSK-SM 54
           T+  + P + Y +K+++   + D +QE  VK ++ +Y  +++Y          P  K S+
Sbjct: 30  TTFHNTPIEVYNKKVNDGVWKRDPYQETAVKAINRLYTELESYTQPPITQDSMPAEKGSI 89

Query: 55  FSFFQDKVKQ------------------PKGLYIYGAVGGGKTMLMDIFYESCE--TKQK 94
            S+     K                   PKG+Y+YG VG GKT LMD+FY +      + 
Sbjct: 90  LSWISPLKKMFSRKKSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLFYHNLPPNVTRS 149

Query: 95  QRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERERER 154
           QR+HF+ FM+ VH   H+++                                        
Sbjct: 150 QRIHFHAFMMQVHRTSHDLQ---------------------------------------- 169

Query: 155 EREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVV 214
                 +R     D I  +A+ I  +T ++CFDE QVTD+ADA++L+RLF  L + GVV+
Sbjct: 170 ------DRYGFEIDFIDHIASGIAKETTVLCFDELQVTDVADALLLRRLFEALMKYGVVI 223

Query: 215 VATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFV 274
             TSNRAP DLYKNG+QR +F+P I +L+    V  L+S  DYR LK+  E+  T  Y  
Sbjct: 224 FITSNRAPSDLYKNGIQRESFIPCIKLLEHRLQVICLDSPNDYRRLKSKTED--TYLYPA 281

Query: 275 KNFANEKKLHGIFKLLC-SQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLG 333
            +   +K L   F  LC + E D      + + GR +   K  G +   TF++LC     
Sbjct: 282 NSPEVKKALENWF--LCYADEKDPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKS 339

Query: 334 SSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFS 393
           ++DYL +   +H  I+ ++P+L+I+ +    RFIT IDALYD + +L++SS+VP+ +++ 
Sbjct: 340 AADYLSLASRYHVFIVSDIPKLSIESKDLIHRFITFIDALYDTHGKLILSSEVPVQEIYP 399

Query: 394 N 394
            
Sbjct: 400 T 400

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P64612|YHCM_ECOLI Uncharacterized protein YhcM OS=Escherichia coli (strain K12) GN=yhcM PE=1 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 76/404 (18%)

Query: 8   SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSK----------SMFSF 57
           S  P+ QY + L+    Q D  Q++ V +L+ +Y  + N  P +            ++  
Sbjct: 3   SVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGK 62

Query: 58  FQDKVKQP-KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKI 116
            +D    P +GLY++G VG GKT LMD+FY+S   ++KQR+HF++FML VH ++  ++  
Sbjct: 63  REDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQG- 121

Query: 117 LARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVAND 176
                                                              DP+  +A+ 
Sbjct: 122 -------------------------------------------------QTDPLEIIADR 132

Query: 177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFL 236
             ++T ++CFDEF V+DI DAM+L  L   LF  G+ +VATSN  PD+LY+NGLQR+ FL
Sbjct: 133 FKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFL 192

Query: 237 PFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCS---- 292
           P ID +K +CDV ++++ +DYR        + T+ +   +  +++    + KL  +    
Sbjct: 193 PAIDAIKQHCDVMNVDAGVDYRL------RTLTQAHLWLSPLHDETRAQMDKLWLALAGG 246

Query: 293 -QENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRN 351
            +EN       + I  R +       Q L  +F  LC       DY+ + ++FHTV++ +
Sbjct: 247 KRENS----PTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFD 302

Query: 352 VPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNE 395
           VP +   + S++RRFI L+D  Y+ +++LV+S++VPL +++  +
Sbjct: 303 VPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGD 346

Escherichia coli (strain K12) (taxid: 83333)

>sp|P64613|YHCM_ECO57 Uncharacterized protein YhcM OS=Escherichia coli O157:H7 GN=yhcM PE=3 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 204/404 (50%), Gaps = 76/404 (18%)

Query: 8   SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSK----------SMFSF 57
           S  P+ QY + L+    Q D  Q++ V +L+ +Y  + N  P +            ++  
Sbjct: 3   SVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGK 62

Query: 58  FQDKVKQP-KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKI 116
            +D    P +GLY++G VG GKT LMD+FY+S   ++KQR+HF++FML VH ++  ++  
Sbjct: 63  REDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQG- 121

Query: 117 LARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVAND 176
                                                              DP+  +A+ 
Sbjct: 122 -------------------------------------------------QTDPLEIIADR 132

Query: 177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFL 236
             ++T ++CFDEF V+DI DAM+L  L   LF  G+ +VATSN  PD+LY+NGLQR+ FL
Sbjct: 133 FKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFL 192

Query: 237 PFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCS---- 292
           P ID +K +CDV ++++ +DYR        + T+ +   +  +++    + KL  +    
Sbjct: 193 PAIDAIKQHCDVMNVDAGVDYRL------RTLTQAHLWLSPLHDETRAQMDKLWLALAGG 246

Query: 293 -QENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRN 351
            +EN       + I  R +       Q L  +F  LC       DY+ + ++FHTV++ +
Sbjct: 247 KRENS----PTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFD 302

Query: 352 VPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNE 395
           VP +   + S++RRFI L+D  Y+ +++LV+S++VPL +++  +
Sbjct: 303 VPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGD 346

Escherichia coli O157:H7 (taxid: 83334)

>sp|P32317|AFG1_YEAST Protein AFG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AFG1 PE=1 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 213/450 (47%), Gaps = 106/450 (23%)

Query: 4   TTSDSSLPSKQYYEKLSN-NEIQEDKHQEQIVKQLDNVYVSIKNYAPQS----------- 51
           T S+  L   Q Y++L    ++++D +Q  I+  L ++Y S+  Y P             
Sbjct: 28  TKSNKCLTPLQEYDRLVKLGKLRDDTYQRGIISSLGDLYDSLVKYVPPVVKTPNAVDQVG 87

Query: 52  ------KSMFSFFQDK-------VKQ-----PKGLYIYGAVGGGKTMLMDIFYESCETK- 92
                 KS+FS  + K       V +     P+G+Y+YG VG GKTMLMD+FY +     
Sbjct: 88  GWLNGLKSVFSRGKPKNIGAYVDVSKIGNSIPRGVYLYGDVGCGKTMLMDLFYTTIPNHL 147

Query: 93  QKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERER 152
            K+R+HF++FM  VH + HE+                                      R
Sbjct: 148 TKKRIHFHQFMQYVHKRSHEI-------------------------------------VR 170

Query: 153 EREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQ--L 210
           E+  +   + + K  D +P +A +I + + ++CFDEFQVTD+ADAMIL+RL T L     
Sbjct: 171 EQNLKELGDAKGKEIDTVPFLAAEIANNSHVLCFDEFQVTDVADAMILRRLMTALLSDDY 230

Query: 211 GVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYR------------ 258
           GVV+ ATSNR PD+LY NG+QR +F+P I+++K    V  LNS  DYR            
Sbjct: 231 GVVLFATSNRHPDELYINGVQRQSFIPCIELIKHRTKVIFLNSPTDYRKIPRPVSSVYYF 290

Query: 259 ----SLKANAEESSTK---------TYFVKNFANEKKL--HGIFKLLCSQENDIVRPRVI 303
               S+K  ++E  T+          YF +    +     H + K              +
Sbjct: 291 PSDTSIKYASKECKTRRETHIKEWYNYFAQASHTDDSTDSHTVHKTFYDYP--------L 342

Query: 304 TIMGRNVTFNK-TCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQ 362
           TI GR     K T  ++ + TF +LC   L + DYL + + F   I+ ++P L+I +R +
Sbjct: 343 TIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDE 402

Query: 363 SRRFITLIDALYDNNIRLVISSDVPLNKLF 392
            RRFIT +DA+YD+  +L  +     + LF
Sbjct: 403 VRRFITFLDAVYDSGGKLATTGAADFSSLF 432

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
170047507	464	ATPase n2b [Culex quinquefasciatus] gi|1	0.858	0.810	0.544	1e-124
189234955	411	PREDICTED: similar to AGAP009867-PA [Tri	0.835	0.890	0.540	1e-122
270002336	433	hypothetical protein TcasGA2_TC001347 [T	0.835	0.845	0.540	1e-122
345493794	452	PREDICTED: putative ATPase N2B-like [Nas	0.863	0.836	0.536	1e-122
158298827	470	AGAP009867-PA [Anopheles gambiae str. PE	0.858	0.8	0.522	1e-121
380027226	450	PREDICTED: putative ATPase N2B-like [Api	0.840	0.817	0.544	1e-120
328786418	453	PREDICTED: putative ATPase N2B-like [Api	0.840	0.812	0.542	1e-119
383847086	451	PREDICTED: putative ATPase N2B-like [Meg	0.840	0.815	0.534	1e-118
307213991	399	Putative ATPase N2B [Harpegnathos saltat	0.831	0.912	0.535	1e-118
332017145	518	Putative ATPase N2B [Acromyrmex echinati	0.842	0.712	0.516	1e-118

>gi|170047507|ref|XP_001851260.1| ATPase n2b [Culex quinquefasciatus] gi|167869933|gb|EDS33316.1| ATPase n2b [Culex quinquefasciatus]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/430 (54%), Positives = 288/430 (66%), Gaps = 54/430 (12%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKS-----MFSFFQ---DKV 62
           P +   +KLS  EI+ D HQ QI + L  VY SI+ Y P   +      F F     +KV
Sbjct: 48  PLELLQDKLSRGEIRPDPHQNQITEALQKVYDSIQGYEPPKPTGGIGKWFGFKARKAEKV 107

Query: 63  KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKA 122
           + PKGLYIYG+VGGGKTMLMD+FY+ CE  +K+RVHFN FM DVH KIHE+K    RD  
Sbjct: 108 EAPKGLYIYGSVGGGKTMLMDMFYDCCEINRKRRVHFNSFMTDVHTKIHEIKSKQVRDVT 167

Query: 123 KSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTW 182
            +                                      + + +DPI PVA  I + +W
Sbjct: 168 ST--------------------------------------KPQPFDPIKPVAEIITADSW 189

Query: 183 LICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVL 242
           LICFDEFQVTDIADAMILKRLFT LF  GV+VVATSNRAPDDLYKNGLQRSNF+PFI VL
Sbjct: 190 LICFDEFQVTDIADAMILKRLFTYLFDSGVIVVATSNRAPDDLYKNGLQRSNFVPFIGVL 249

Query: 243 KTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHGIFKLLCSQENDIVRPR 301
           K++C+V +L+S +DYR+     E      YFVK+  + +  +  +FK+LCSQEND++RP+
Sbjct: 250 KSHCNVVTLSSGVDYRTATLKGEGMH---YFVKSEVDADGAMDKLFKVLCSQENDLIRPK 306

Query: 302 VITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRS 361
             T  GRN++F KTCGQ+L++TFDELC R LG+SDYL I Q FHTV+IR++PQLN+KL+S
Sbjct: 307 TFTHFGRNISFAKTCGQVLDSTFDELCDRPLGASDYLQITQFFHTVLIRDIPQLNLKLKS 366

Query: 362 QSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTH-SDEHRMLMDDLNIKANDGT 420
           Q+RRFITLID LYD+ +RLV+SSDVP   LFSNE   D H SDEHRMLMDDL I   D  
Sbjct: 367 QTRRFITLIDTLYDSRVRLVVSSDVPYKFLFSNEKPDDIHTSDEHRMLMDDLKI-TKDSQ 425

Query: 421 DANLKSNIFT 430
           DA+  SNIFT
Sbjct: 426 DAS--SNIFT 433

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234955|ref|XP_973142.2| PREDICTED: similar to AGAP009867-PA [Tribolium castaneum]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/409 (54%), Positives = 283/409 (69%), Gaps = 43/409 (10%)

Query: 17  EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFS-FFQDKVKQPKGLYIYGAVG 75
           EK++N EIQ D+ Q ++ K L  +Y   K+Y P  K++ S FF  + K PKGLYIYGAVG
Sbjct: 13  EKIANGEIQRDEIQLKVGKSLQRIYEETKSYQPTEKNLLSKFFSSQKKAPKGLYIYGAVG 72

Query: 76  GGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDV 135
           GGKTMLMD+FY +C   +K R+HFN+FM+DVHAKIHE KK + RD +             
Sbjct: 73  GGKTMLMDLFYNTCNIDKKSRIHFNEFMVDVHAKIHETKKEVVRDFS------------- 119

Query: 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA 195
                                    ER+AK +DPIPPVA+ I  + W+ICFDEFQVTD+A
Sbjct: 120 -------------------------ERKAKPFDPIPPVADLISKRAWMICFDEFQVTDVA 154

Query: 196 DAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNI 255
           DAMILKRLFT LFQ G+V++ATSNR+PDDLYKNGLQRSNF+PFI VLK +C++ +L+S I
Sbjct: 155 DAMILKRLFTVLFQNGIVMIATSNRSPDDLYKNGLQRSNFVPFIQVLKDHCEIITLDSGI 214

Query: 256 DYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKT 315
           DYR LK    +S+   YFVK       +  IFK LCS+ENDIVR R  TI GR+VTF+K 
Sbjct: 215 DYR-LKGQTTKSN---YFVKPEHKLDPIKPIFKFLCSKENDIVRNRTFTIQGRDVTFSKA 270

Query: 316 CGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYD 375
           CG +LE TF+ELC R LG++DYLH+ Q FHT+IIR+VPQ+++K++SQ+RRFITLIDA YD
Sbjct: 271 CGGVLETTFEELCDRPLGANDYLHLAQFFHTIIIRDVPQMSLKIKSQTRRFITLIDAFYD 330

Query: 376 NNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANL 424
           + I++VIS+DVP+  LF  + +    SDE RMLMDDL I   D   A++
Sbjct: 331 HRIKVVISADVPIRDLFLRQKLEVGISDEQRMLMDDLKIGKEDAATASI 379

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002336|gb|EEZ98783.1| hypothetical protein TcasGA2_TC001347 [Tribolium castaneum]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/409 (54%), Positives = 283/409 (69%), Gaps = 43/409 (10%)

Query: 17  EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFS-FFQDKVKQPKGLYIYGAVG 75
           EK++N EIQ D+ Q ++ K L  +Y   K+Y P  K++ S FF  + K PKGLYIYGAVG
Sbjct: 35  EKIANGEIQRDEIQLKVGKSLQRIYEETKSYQPTEKNLLSKFFSSQKKAPKGLYIYGAVG 94

Query: 76  GGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDV 135
           GGKTMLMD+FY +C   +K R+HFN+FM+DVHAKIHE KK + RD +             
Sbjct: 95  GGKTMLMDLFYNTCNIDKKSRIHFNEFMVDVHAKIHETKKEVVRDFS------------- 141

Query: 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA 195
                                    ER+AK +DPIPPVA+ I  + W+ICFDEFQVTD+A
Sbjct: 142 -------------------------ERKAKPFDPIPPVADLISKRAWMICFDEFQVTDVA 176

Query: 196 DAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNI 255
           DAMILKRLFT LFQ G+V++ATSNR+PDDLYKNGLQRSNF+PFI VLK +C++ +L+S I
Sbjct: 177 DAMILKRLFTVLFQNGIVMIATSNRSPDDLYKNGLQRSNFVPFIQVLKDHCEIITLDSGI 236

Query: 256 DYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKT 315
           DYR LK    +S+   YFVK       +  IFK LCS+ENDIVR R  TI GR+VTF+K 
Sbjct: 237 DYR-LKGQTTKSN---YFVKPEHKLDPIKPIFKFLCSKENDIVRNRTFTIQGRDVTFSKA 292

Query: 316 CGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYD 375
           CG +LE TF+ELC R LG++DYLH+ Q FHT+IIR+VPQ+++K++SQ+RRFITLIDA YD
Sbjct: 293 CGGVLETTFEELCDRPLGANDYLHLAQFFHTIIIRDVPQMSLKIKSQTRRFITLIDAFYD 352

Query: 376 NNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANL 424
           + I++VIS+DVP+  LF  + +    SDE RMLMDDL I   D   A++
Sbjct: 353 HRIKVVISADVPIRDLFLRQKLEVGISDEQRMLMDDLKIGKEDAATASI 401

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493794|ref|XP_003427154.1| PREDICTED: putative ATPase N2B-like [Nasonia vitripennis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/429 (53%), Positives = 288/429 (67%), Gaps = 51/429 (11%)

Query: 6   SDSSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQP 65
           +D   P +    K+S  E+  D++Q +I +QL  VY  ++ Y P+ +   + +  K K+ 
Sbjct: 40  ADPESPLEVLKMKISKGELMNDEYQLKIAEQLQRVYEDVRGYEPEKEGFLAKWMGKSKKK 99

Query: 66  K----GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDK 121
           K    GLY+YGAVGGGKTMLMD+FY  C+ + K+RVHF+ FML+VH+KIHEVKK + RD 
Sbjct: 100 KKSPKGLYLYGAVGGGKTMLMDLFYNCCQMQNKKRVHFHSFMLNVHSKIHEVKKTVVRDT 159

Query: 122 AKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKT 181
            K                                         K +DPIPPVA  I   T
Sbjct: 160 TK----------------------------------------LKPFDPIPPVAASITENT 179

Query: 182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDV 241
           WL+CFDEFQVTDIADAMILKRLFTELF+ GVVVVATSNR+PDDLYKNGLQR NFLPFI V
Sbjct: 180 WLLCFDEFQVTDIADAMILKRLFTELFERGVVVVATSNRSPDDLYKNGLQRGNFLPFIQV 239

Query: 242 LKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPR 301
           LK +C ++SL+S IDYR   A A   S K YF++    EK +  IFK LCS END+VR R
Sbjct: 240 LKDHCQISSLDSGIDYR---AKAVSGSEKHYFIRGEEAEKGIEKIFKYLCSMENDVVRAR 296

Query: 302 VITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRS 361
            + I GRNV FNKTCGQ++++TF ELC R LG+SDY+ ICQ FHTVIIR+VPQLN+KL+S
Sbjct: 297 TLNIKGRNVIFNKTCGQVMDSTFTELCDRPLGASDYIEICQAFHTVIIRDVPQLNLKLKS 356

Query: 362 QSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTD 421
           Q+RRFITLID LYDN +R+VIS+  P N+LF  E   + ++DE RMLMDDL I  + G++
Sbjct: 357 QARRFITLIDTLYDNKVRVVISASAPYNQLFVPEGE-EEYTDEKRMLMDDLKI--SHGSE 413

Query: 422 ANLKSNIFT 430
            + KSNIFT
Sbjct: 414 DH-KSNIFT 421

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298827|ref|XP_318985.4| AGAP009867-PA [Anopheles gambiae str. PEST] gi|157014073|gb|EAA14419.4| AGAP009867-PA [Anopheles gambiae str. PEST]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/444 (52%), Positives = 289/444 (65%), Gaps = 68/444 (15%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKS-----MFSF-------- 57
           P +   EKL++ EIQ D HQ ++ + L  VY SIK Y+P   S      FSF        
Sbjct: 40  PVELLKEKLNHGEIQPDPHQVRVTEALQVVYDSIKTYSPPKPSTGIGKWFSFGRAEKAVA 99

Query: 58  -----FQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETK--QKQRVHFNKFMLDVHAKI 110
                 +  V  PKGLYIYG+VGGGKTMLMD+FY+ C     +K+RVHFN FM DVHAKI
Sbjct: 100 APKGLAEKAVAAPKGLYIYGSVGGGKTMLMDMFYDCCAVSIDRKRRVHFNSFMTDVHAKI 159

Query: 111 HEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPI 170
           H++K    RD + S                                      + + +DPI
Sbjct: 160 HDIKSKHVRDASNS--------------------------------------KPQPFDPI 181

Query: 171 PPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGL 230
            PVA  I   +W+ICFDEFQVTDIADAMILKRLFT LF  GV+VVATSNRAPDDLYKNGL
Sbjct: 182 KPVAELITQDSWMICFDEFQVTDIADAMILKRLFTYLFNNGVIVVATSNRAPDDLYKNGL 241

Query: 231 QRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANE---KKLHGIF 287
           QRSNF+PFI VLK +C++ +L+S +DYR+     E   +K YF K+         +  +F
Sbjct: 242 QRSNFVPFIGVLKNHCNIVTLDSGVDYRTAALKGE---SKHYFDKSQGASDANASMDKLF 298

Query: 288 KLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTV 347
           K+LCSQEND++RP+  T  GRN+TF KTCGQ+L++TFDELC + LG+SD+L I Q FHTV
Sbjct: 299 KVLCSQENDMIRPKTFTHFGRNITFAKTCGQVLDSTFDELCDKPLGASDFLQIAQFFHTV 358

Query: 348 IIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTH-SDEHR 406
           +IR++PQLN+KL+SQ+RRFITLID LYD+ +RLV+S+DVP   LFSN+A  D H SDEHR
Sbjct: 359 LIRDIPQLNLKLKSQTRRFITLIDTLYDSRVRLVVSADVPYKYLFSNDAPDDMHTSDEHR 418

Query: 407 MLMDDLNIKANDGTDANLKSNIFT 430
           MLMDDL I   D TDA+  SNIFT
Sbjct: 419 MLMDDLKI-TKDSTDAS--SNIFT 439

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027226|ref|XP_003697330.1| PREDICTED: putative ATPase N2B-like [Apis florea]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/415 (54%), Positives = 282/415 (67%), Gaps = 47/415 (11%)

Query: 18  KLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMF-SFFQDKVKQP-KGLYIYGAVG 75
           K++  E+ +D+HQ ++ K L N+Y  I  Y P+  S+   +   K KQP KGLY+YGAVG
Sbjct: 50  KIAKGELMKDEHQMKVTKTLQNIYEEISGYKPEEFSLLDKWLGRKRKQPPKGLYLYGAVG 109

Query: 76  GGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDV 135
           GGKTMLMD+FY+ C+ K K+RVHF+ FMLDVH K+HEVKK + RD + +           
Sbjct: 110 GGKTMLMDLFYQCCQIKNKKRVHFHSFMLDVHNKVHEVKKNIVRDVSST----------- 158

Query: 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA 195
                                      + + +DPIPPVA  II + WL+CFDEFQVTDIA
Sbjct: 159 ---------------------------KLQPFDPIPPVARSIIEEAWLLCFDEFQVTDIA 191

Query: 196 DAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNI 255
           DAMILKRLFTELF  GV+V+ATSNRAPDDLYKNGLQR NF+PFI VLK YC + SL+S I
Sbjct: 192 DAMILKRLFTELFNNGVIVIATSNRAPDDLYKNGLQRGNFIPFIQVLKNYCIINSLDSGI 251

Query: 256 DYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKT 315
           DYR       E   K YF+K       +  +FK L S+END+VR R I+I GRNVTF KT
Sbjct: 252 DYRLKTGLGNE---KIYFIKGKDAISDVDKVFKYLSSKENDVVRSRTISIRGRNVTFKKT 308

Query: 316 CGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYD 375
           CGQIL++TF+ELC R LG+SDYL + Q FHTVIIR+VPQLN +L+SQ+RRFITLID LYD
Sbjct: 309 CGQILDSTFEELCDRPLGASDYLELSQAFHTVIIRDVPQLNFRLKSQARRFITLIDTLYD 368

Query: 376 NNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFT 430
           N +R+VIS+ VP  KLF  E   + ++DE RMLMDDL I  + G+D + KSN+FT
Sbjct: 369 NKVRVVISAAVPHTKLFVPEGN-NEYTDEKRMLMDDLKI--SHGSD-DYKSNLFT 419

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786418|ref|XP_624398.2| PREDICTED: putative ATPase N2B-like [Apis mellifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/415 (54%), Positives = 280/415 (67%), Gaps = 47/415 (11%)

Query: 18  KLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMF-SFFQDKVKQP-KGLYIYGAVG 75
           K++  E+ +D+HQ ++ K L N+Y  I  Y P+  S+   +   K KQP KGLY+YGAVG
Sbjct: 53  KIAKGELMKDEHQMKVTKTLQNIYEEINGYKPEEFSLLDKWLGRKRKQPPKGLYLYGAVG 112

Query: 76  GGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDV 135
           GGKTMLMD+FY+ C+ K K+RVHF+ FMLDVH K+HEVKK + RD + +           
Sbjct: 113 GGKTMLMDLFYQCCQIKNKKRVHFHSFMLDVHNKVHEVKKNIVRDVSST----------- 161

Query: 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA 195
                                      + + +DPIPPVA  I  + WL+CFDEFQVTDIA
Sbjct: 162 ---------------------------KLQPFDPIPPVARSITEEAWLLCFDEFQVTDIA 194

Query: 196 DAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNI 255
           DAMILKRLFTELF  GV+V+ATSNRAPDDLYKNGLQR NF+PFI VLK YC + SL+S I
Sbjct: 195 DAMILKRLFTELFNNGVIVIATSNRAPDDLYKNGLQRGNFIPFIQVLKNYCIINSLDSGI 254

Query: 256 DYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKT 315
           DYR       E   K YF+K       +  +FK L S+END+VR R I I GRNVTF KT
Sbjct: 255 DYRLKTGLGNE---KIYFIKGKDAISDVDKVFKYLSSKENDVVRSRTICIRGRNVTFKKT 311

Query: 316 CGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYD 375
           CGQIL++TF+ELC R LG+SDYL + Q FHTVIIR+VPQLN +L+SQ+RRFITLID LYD
Sbjct: 312 CGQILDSTFEELCDRPLGASDYLELSQAFHTVIIRDVPQLNFRLKSQTRRFITLIDTLYD 371

Query: 376 NNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFT 430
           N +R+VIS+ VP  KLF  E   + ++DE RMLMDDL I  + G+D + KSN+FT
Sbjct: 372 NKVRVVISAAVPHTKLFVPEGN-NEYTDEKRMLMDDLKI--SHGSD-DYKSNLFT 422

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847086|ref|XP_003699186.1| PREDICTED: putative ATPase N2B-like [Megachile rotundata]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/415 (53%), Positives = 283/415 (68%), Gaps = 47/415 (11%)

Query: 18  KLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMF-SFFQDKVKQP-KGLYIYGAVG 75
           K+   E+ +D+HQ ++VK L N+Y  I  Y P+  S+   +   K KQP KGLY+YGAVG
Sbjct: 51  KIVRGELMKDEHQTKVVKTLQNIYEEINGYKPEEFSVLDKWLGRKRKQPPKGLYLYGAVG 110

Query: 76  GGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDV 135
           GGKTMLMD+FYE C+ ++K+RVHF+ FM DVH K+HEVKK + RD   +           
Sbjct: 111 GGKTMLMDLFYECCQIEKKRRVHFHAFMADVHNKVHEVKKSIVRDVDST----------- 159

Query: 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA 195
                                      + + +DPIPPVA  I  + WL+CFDEFQVTDIA
Sbjct: 160 ---------------------------KLQPFDPIPPVAKTITDEAWLLCFDEFQVTDIA 192

Query: 196 DAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNI 255
           DAMILKRLFTELF  GV+V+ATSNRAPDDLYKNGLQR NF+PFI VLK YC V SL+S I
Sbjct: 193 DAMILKRLFTELFDHGVIVIATSNRAPDDLYKNGLQRGNFIPFIQVLKNYCIVHSLDSGI 252

Query: 256 DYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKT 315
           DYR     ++E   K YF+K       +  +FK LCS+ENDIVR R ++I GRNVTF +T
Sbjct: 253 DYRLKNGLSDE---KIYFIKGEDAVSDVDKVFKYLCSKENDIVRSRTLSIRGRNVTFERT 309

Query: 316 CGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYD 375
           CGQ+L++TF+ELC R LG+SDYL + QIFHT+IIR+VPQL+ + +SQ+RRFITLID LYD
Sbjct: 310 CGQVLDSTFEELCDRPLGASDYLKLSQIFHTIIIRDVPQLDFRFKSQTRRFITLIDTLYD 369

Query: 376 NNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFT 430
           N +R+VIS+ VP  +LF  E   + ++DE RMLMDDL I  + G+D + KSN+FT
Sbjct: 370 NKVRVVISAAVPHTQLFIPEGDSE-YTDEKRMLMDDLKI--SHGSD-DYKSNLFT 420

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213991|gb|EFN89198.1| Putative ATPase N2B [Harpegnathos saltator]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/411 (53%), Positives = 285/411 (69%), Gaps = 47/411 (11%)

Query: 22  NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFS-FFQDKVK-QPKGLYIYGAVGGGKT 79
            E+ +D HQ ++ + L  VY  + NY PQ  ++   +F  K K  PKGLYIYGAVGGGKT
Sbjct: 3   GELMKDAHQMKVAQILQGVYQEVHNYKPQQLNILEKWFGGKKKDAPKGLYIYGAVGGGKT 62

Query: 80  MLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEE 139
           MLMD+FY  C+ + K+RVHF+ FMLDVH ++HEVKK + RD   +               
Sbjct: 63  MLMDLFYNCCQIENKKRVHFHSFMLDVHNRVHEVKKTIVRDVTST--------------- 107

Query: 140 EEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMI 199
                                  + + +DPIPPVA+ I  K WL+CFDEFQVTDIADAMI
Sbjct: 108 -----------------------KLQPFDPIPPVASGIAEKAWLLCFDEFQVTDIADAMI 144

Query: 200 LKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRS 259
           LKRLFTELF  GV+VVATSNR+PD+LYKNGLQR NF+PFI VLK +C V++L+S IDYR 
Sbjct: 145 LKRLFTELFDNGVIVVATSNRSPDNLYKNGLQRGNFVPFIQVLKNHCSVSNLDSGIDYR- 203

Query: 260 LKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQI 319
           LK+ +   + K YF+K       +  +FK LCS END+VRPR I+I GRNV+F KTCGQ+
Sbjct: 204 LKSGS--GNKKIYFIKGKDAANDVDKVFKYLCSMENDVVRPRTISIRGRNVSFCKTCGQV 261

Query: 320 LEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIR 379
           L++TF+ELC R LG+SDYL + QIFHTVIIR++PQLN++L+SQ+RRFITLID LYDN +R
Sbjct: 262 LDSTFEELCDRPLGASDYLQLSQIFHTVIIRDMPQLNLRLKSQARRFITLIDTLYDNRVR 321

Query: 380 LVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFT 430
           +V+S+ VP  +LF  EA  + ++DE RMLMDDL I  + G++ + K+NIFT
Sbjct: 322 VVMSATVPHTQLFLPEAESE-YTDEKRMLMDDLKI--SHGSEDH-KANIFT 368

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017145|gb|EGI57944.1| Putative ATPase N2B [Acromyrmex echinatior]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/416 (51%), Positives = 288/416 (69%), Gaps = 47/416 (11%)

Query: 17  EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFS--FFQDKVKQPKGLYIYGAV 74
           +K++  ++  D +Q ++ + L  +Y  +++Y PQ  +M    F+  +   PKGLYIYGAV
Sbjct: 117 QKIARGKLMNDTYQTKVAQTLQQIYQEVQDYKPQQLNMLEKWFYSKRRDAPKGLYIYGAV 176

Query: 75  GGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLD 134
           GGGKTMLMD+FY  C+ + K+RVHF+ FMLDVH+++HEVKK + RD   +          
Sbjct: 177 GGGKTMLMDLFYNCCQIENKKRVHFHSFMLDVHSRVHEVKKTIVRDMTST---------- 226

Query: 135 VMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI 194
                                       + + +DPIPPVA+ I  +TWL+CFDEFQVTDI
Sbjct: 227 ----------------------------KLQPFDPIPPVASGIAEETWLLCFDEFQVTDI 258

Query: 195 ADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSN 254
           ADAMILKRLFTELF  GV+VVATSNR+PDDLYKNGLQR NF+PFI VLK +C V++L+S 
Sbjct: 259 ADAMILKRLFTELFDNGVIVVATSNRSPDDLYKNGLQRGNFVPFIKVLKDHCLVSNLDSG 318

Query: 255 IDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNK 314
           IDYR LK+ +   + K YF+K       +  +FK LCS END++R R I+I GRNVTF K
Sbjct: 319 IDYR-LKSGS--GNKKIYFIKGKDATNDVDKVFKYLCSMENDVIRSRTISIRGRNVTFRK 375

Query: 315 TCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY 374
           TCGQ+L++TF+ELC R LG+SDYL + QIFHTVIIR++PQLN++L+SQ+RRFITLID LY
Sbjct: 376 TCGQVLDSTFEELCDRPLGASDYLQLSQIFHTVIIRDMPQLNLRLKSQARRFITLIDTLY 435

Query: 375 DNNIRLVISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFT 430
           DN +R+V+S+ VP  +LF +E   + ++DE RMLMDDL I    G++ + K+NIFT
Sbjct: 436 DNKVRVVMSAAVPHTQLFLSETESE-YTDEKRMLMDDLKI--THGSEDH-KANIFT 487

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
FB|FBgn0033734	458	CG8520 [Drosophila melanogaste	0.557	0.532	0.604	1.1e-98
MGI|MGI:2148801	480	Lace1 "lactation elevated 1" [	0.563	0.514	0.523	8.8e-96
UNIPROTKB|F1PD84	480	LACE1 "Uncharacterized protein	0.563	0.514	0.511	3e-93
RGD|1561501	480	Lace1 "lactation elevated 1" [	0.563	0.514	0.515	7.9e-93
UNIPROTKB|Q8WV93	481	LACE1 "Lactation elevated prot	0.563	0.513	0.507	7.9e-93
UNIPROTKB|E1BQ18	480	LACE1 "Uncharacterized protein	0.563	0.514	0.511	1.6e-92
ZFIN|ZDB-GENE-091006-2	471	lace1a "lactation elevated 1a"	0.579	0.539	0.511	3e-91
UNIPROTKB|E1C0S7	493	LACE1 "Uncharacterized protein	0.563	0.501	0.527	3.8e-91
WB|WBGene00016261	445	C30F12.2 [Caenorhabditis elega	0.584	0.575	0.469	2.5e-81
ZFIN|ZDB-GENE-041014-178	516	lace1b "lactation elevated 1b"	0.584	0.496	0.471	3.2e-81

FB|FBgn0033734 CG8520 [Drosophila melanogaster (taxid:7227)]

 Score = 764 (274.0 bits), Expect = 1.1e-98, Sum P(3) = 1.1e-98
 Identities = 151/250 (60%), Positives = 192/250 (76%)

Query:   167 YDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226
             +DP  PVA+ I S++WLICFDEFQVTDIADAM+LKRLFT LF+ G+VVVATSNR P+DLY
Sbjct:   175 FDPTKPVADLIASESWLICFDEFQVTDIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLY 234

Query:   227 KNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHG 285
             KNGLQR+NFLPFI +L+  C V+ L+S IDYR +   A+   T  YFVK   + +  ++ 
Sbjct:   235 KNGLQRTNFLPFIALLQRRCKVSQLDS-IDYRRI---AQSGDTN-YFVKGQTDADGSMNR 289

Query:   286 IFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFH 345
             +FK+LC++ENDI+RPR +T  GR++TFN+TCGQ+L++TF ELC R L  SD+L I Q FH
Sbjct:   290 MFKILCAEENDIIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFH 349

Query:   346 TVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEH 405
             TV+IR+VPQL + +++Q RRFITLID LY+N +R+VISSDV L  LFS      T SD  
Sbjct:   350 TVLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTGGSKTLSDSE 409

Query:   406 RMLMDDLNIK 415
             R LMDDLNIK
Sbjct:   410 RTLMDDLNIK 419

GO:0016887 "ATPase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2148801 Lace1 "lactation elevated 1" [Mus musculus (taxid:10090)]

 Score = 686 (246.5 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
 Identities = 132/252 (52%), Positives = 181/252 (71%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI P+A +I  +T L+CFDEFQVTDIADAMILK+LF  LF+ GVVVVATSNR P+
Sbjct:   190 AKSYDPIAPIAEEISQETSLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPE 249

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR+NF+PFI VLK YCD   L+S +DYR  +      + K Y++ + A+ E  
Sbjct:   250 DLYKNGLQRANFVPFIAVLKEYCDTLQLDSGVDYRKREL---APAGKLYYLTSEADVEAV 306

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+  PR++ + GR +  NK CG + + TF+ELC R LG+SDYL + +
Sbjct:   307 VDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGSVADCTFEELCERPLGASDYLELSK 366

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F TVIIRN+PQ ++  R+Q+RRFITLID  YD  +R++ S+  P++ LF ++   D+ S
Sbjct:   367 NFDTVIIRNIPQFSLAKRTQARRFITLIDNFYDFKVRIICSASAPISSLFLHQHQ-DSES 425

Query:   403 DEHRMLMDDLNI 414
             D+ R+LMDDL +
Sbjct:   426 DQSRILMDDLGL 437

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PD84 LACE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 663 (238.4 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
 Identities = 129/252 (51%), Positives = 176/252 (69%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI P+A +I  +  L+CFDEFQVTDIADAMILK+LF  LF+ GVVVVATSNR P+
Sbjct:   189 AKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPE 248

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR+NF+PFI VLK YC+   L+S IDYR     A   + K Y++ + A+ E  
Sbjct:   249 DLYKNGLQRANFVPFIAVLKKYCNTVQLDSGIDYRKRDLPA---AGKLYYLTSEADVEAV 305

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+ RPR++ + GR +  NK CG + + TF+ELC R LG+SDYL + +
Sbjct:   306 MDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSK 365

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F TV +RN+PQ  +  R+Q+RRFITLID  YD  +R++ S+  P+  LF ++   D+  
Sbjct:   366 NFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRVICSASTPIASLFLHQHH-DSEL 424

Query:   403 DEHRMLMDDLNI 414
             +  R+LMDDL +
Sbjct:   425 EHSRILMDDLGL 436

GO:0005524 "ATP binding" evidence=IEA

RGD|1561501 Lace1 "lactation elevated 1" [Rattus norvegicus (taxid:10116)]

 Score = 669 (240.6 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 130/252 (51%), Positives = 178/252 (70%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI P+A +I  +  L+CFDEFQVTDIADAMILK+LF  LF+ GVVVVATSNR P+
Sbjct:   190 AKSYDPIAPIAEEISQEASLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPE 249

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKK- 282
             DLYKNGLQR+NF+PFI VLK YC+   L+S +DYR  +      + K Y++ + A+    
Sbjct:   250 DLYKNGLQRANFVPFIAVLKEYCNTVQLDSGVDYRKRELTP---AGKLYYLTSEADVGTV 306

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+  PR++ + GR +  NK CG + + TF+ELC R LG+SDYL + +
Sbjct:   307 MDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSK 366

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F TVIIRN+PQ ++  R+Q RRFITLID  YD  +R++ S+ VP++ LF  +   D+ S
Sbjct:   367 NFDTVIIRNIPQFSLAKRTQVRRFITLIDNFYDFKVRIICSASVPISSLFVYQHQ-DSES 425

Query:   403 DEHRMLMDDLNI 414
             D+ R+LMDDL +
Sbjct:   426 DQSRVLMDDLGL 437

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q8WV93 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 668 (240.2 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 128/252 (50%), Positives = 178/252 (70%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI P+A +I  +  L+CFDEFQVTDIADAMILK+LF  LF+ GVVVVATSNR P+
Sbjct:   190 AKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPE 249

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR+NF+PFI VLK YC+   L+S IDYR  +  A   + K Y++ + A+ E  
Sbjct:   250 DLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPA---AGKLYYLTSEADVEAV 306

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+ RPR++ + GR +  NK CG + + TF+ELC R LG+SDYL + +
Sbjct:   307 MDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSK 366

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F T+ +RN+PQ  +  R+Q RRFITLID  YD  +R++ S+  P++ LF ++   D+  
Sbjct:   367 NFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICSASTPISSLFLHQHH-DSEL 425

Query:   403 DEHRMLMDDLNI 414
             ++ R+LMDDL +
Sbjct:   426 EQSRILMDDLGL 437

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BQ18 LACE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 666 (239.5 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
 Identities = 129/252 (51%), Positives = 178/252 (70%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI P+A +I  +  L+CFDEFQVTDIADAMILK+LF  LF+ GVVVVATSNR P+
Sbjct:   189 AKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPE 248

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR+NF+PFI VLK YC+   L+S IDYR  +  A   + K Y++ + A+ E  
Sbjct:   249 DLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPA---AGKLYYLTSEADVEAV 305

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+ RPR++ + GR +  NK CG + + TF+ELC R LG+SDYL + +
Sbjct:   306 MDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSK 365

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F TV +RN+PQ  +  R+Q+RRFITLID  YD  +R++ S+  P++ LF  +   D+  
Sbjct:   366 NFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRIICSASAPVSSLFLCDHH-DSEL 424

Query:   403 DEHRMLMDDLNI 414
             ++ R+LMDDL +
Sbjct:   425 EQSRILMDDLGL 436

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-091006-2 lace1a "lactation elevated 1a" [Danio rerio (taxid:7955)]

 Score = 659 (237.0 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
 Identities = 132/258 (51%), Positives = 179/258 (69%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AK+YDPI PVA +I  +  L+CFDEFQVTDIADAMILK+LF  LF  GVVVVATSNR PD
Sbjct:   179 AKAYDPIAPVAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFLNGVVVVATSNRPPD 238

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR NF+PFI VLK YC    L+S IDYR  + N   ++ K +++ +  + +  
Sbjct:   239 DLYKNGLQRVNFVPFIAVLKEYCQTLRLDSGIDYR--RRN-RPAAGKLFYLSSEPDVDAT 295

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             L  +F  +  ++NDI RPR + + GR +T +K CG I + TF+ELC R +G+SDYL I  
Sbjct:   296 LDKLFDEMAFKQNDITRPRSLKVHGRILTLDKACGTIADCTFEELCDRPIGASDYLEISA 355

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
             +F TV IRN+P L +  ++Q+RRFITLID LY++ +R+V+ ++ PL+ LF +E   D   
Sbjct:   356 VFDTVFIRNIPLLTLNKKTQARRFITLIDTLYEHKVRVVLKAETPLDDLFVHEHHDDHDP 415

Query:   403 DEHRMLMDDLNIKANDGT 420
              E  +L+DDL I  + G+
Sbjct:   416 HETHVLLDDLGISRDAGS 433

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C0S7 LACE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 665 (239.2 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 133/252 (52%), Positives = 176/252 (69%)

Query:   164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223
             AKSYDPI PVA +I  +  L+CFDEFQVTDIADAMILK+LF  LFQ GVVVVATSNR P+
Sbjct:   200 AKSYDPIAPVAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFQNGVVVVATSNRPPE 259

Query:   224 DLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKK 282
             DLYKNGLQR+NF+PFI VLK YC    L+S IDYR     A   + K Y++ + A+ E  
Sbjct:   260 DLYKNGLQRANFVPFIAVLKKYCSTVQLDSGIDYRKRVLPA---AGKLYYLTSEADVEAV 316

Query:   283 LHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQ 342
             +  +F  L  ++ND+ RPR++ + GR +  NK CG I + TF+ELC R LG+SDYL I +
Sbjct:   317 MDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADFTFEELCDRPLGASDYLEISK 376

Query:   343 IFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402
              F TV +R++P L +  R+Q+RRFITLID  Y++ +R++ S+  PL  LF  EA      
Sbjct:   377 HFDTVFVRDIPPLTMAKRTQARRFITLIDTFYEHKVRIICSAATPLQSLFVVEAG-SIEL 435

Query:   403 DEHRMLMDDLNI 414
             ++ R+LMDDL++
Sbjct:   436 EDSRVLMDDLDL 447

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00016261 C30F12.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 601 (216.6 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
 Identities = 124/264 (46%), Positives = 170/264 (64%)

Query:   167 YDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226
             +DP+P + ++I+  T L+CFDEFQVTDIADAMILKR F+ LF  G+V+VATSNRAP +LY
Sbjct:   149 FDPVPVIVDEIMETTNLLCFDEFQVTDIADAMILKRFFSMLFDRGLVMVATSNRAPSELY 208

Query:   227 KNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGI 286
             KNGLQR  F+PFI +L+  C   +L+S +DYR    +A       YF    +N +    +
Sbjct:   209 KNGLQRHQFMPFITILEDKCASLALDSGMDYRR---SAAGDGNHVYFSSEDSNTQ-CDIV 264

Query:   287 FKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHT 346
             FK   + END VR + + I+GR V   K CG + +  F ELC    G+ DYL   ++FHT
Sbjct:   265 FKQSAANENDTVRSKTLEILGRRVIVEKCCGGVADVDFKELCMTAKGAVDYLVYARVFHT 324

Query:   347 VIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTH---SD 403
             VI+RN+P +N  + +  RRFIT+ID  YD  +R+VI +  PL++LF  E    +H   SD
Sbjct:   325 VIVRNIPIMNQDMWNAMRRFITMIDTFYDQKVRVVIGAAAPLDELFQFEGHNTSHDALSD 384

Query:   404 EHRMLMDDLNIKAN-DGTDANLKS 426
               RMLMDDL IK++ +G  AN+ S
Sbjct:   385 SKRMLMDDLGIKSDHEGMSANVFS 408

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-041014-178 lace1b "lactation elevated 1b" [Danio rerio (taxid:7955)]

 Score = 631 (227.2 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
 Identities = 125/265 (47%), Positives = 184/265 (69%)

Query:   167 YDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226
             YDPI PVA +I  +T LICFDEFQV DIADAMILK+LF  LF+ GVVVVATSNR P++LY
Sbjct:   228 YDPIFPVAMEIAEETCLICFDEFQVVDIADAMILKQLFEGLFKCGVVVVATSNRPPEELY 287

Query:   227 KNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFAN-EKKLHG 285
             KNGLQR+ F+PFI VLK YC + SL++ ID+R+ +    + + + Y++ +  + E  ++ 
Sbjct:   288 KNGLQRAAFVPFIGVLKEYCRIVSLDTGIDFRTREM---KPAGRLYYISSEPDAENAVNA 344

Query:   286 IFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFH 345
             +F+ L  ++ND+ RPRV+ + GR VT ++TCG I + +F ELC + LG+ DYL I + F 
Sbjct:   345 LFEELAFRQNDVTRPRVLNVQGREVTLSRTCGTIADCSFQELCEQPLGAGDYLEIARCFD 404

Query:   346 TVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEH 405
             TVIIRNVP L + ++ Q+RRF TLID  YD  +R+V+ +D PL++L     +    + + 
Sbjct:   405 TVIIRNVPYLQLGMKDQARRFTTLIDNFYDQKVRVVMLADAPLDRLLDQGQMTGEEARD- 463

Query:   406 RMLMDDLNIKANDGTDANLKSNIFT 430
             R+++D+L +   D  +A+ +  +FT
Sbjct:   464 RLMLDELGL--TD--EASKRITLFT 484

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PX9	LACE1_RAT	No assigned EC number	0.4419	0.8264	0.7541	yes	N/A
Q3V384	LACE1_MOUSE	No assigned EC number	0.4518	0.8264	0.7541	yes	N/A
P32317	AFG1_YEAST	No assigned EC number	0.3088	0.7853	0.6758	yes	N/A
O42895	YBQ2_SCHPO	No assigned EC number	0.3159	0.7762	0.7488	yes	N/A
Q8WV93	LACE1_HUMAN	No assigned EC number	0.4345	0.8264	0.7525	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	438
COG1485	367	COG1485, COG1485, Predicted ATPase [General functi	1e-113
pfam03969	361	pfam03969, AFG1_ATPase, AFG1-like ATPase	4e-89
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
pfam08701	80	pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	5e-05
pfam12757	126	pfam12757, DUF3812, Protein of unknown function (D	0.004

>gnl|CDD|224402 COG1485, COG1485, Predicted ATPase [General function prediction only]

 Score =  337 bits (867), Expect = e-113
 Identities = 131/387 (33%), Positives = 200/387 (51%), Gaps = 57/387 (14%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYI 70
           P ++Y + +     Q D  Q      LD +Y  +       K++   F       +GLY+
Sbjct: 11  PVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYL 70

Query: 71  YGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVP 130
           +G VG GKTMLMD+FYES   ++K+R+HF++FM  VH ++H ++             G  
Sbjct: 71  WGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQ-------------GQT 117

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQ 190
           +                                     P+PP+A+++ ++T ++CFDEF+
Sbjct: 118 D-------------------------------------PLPPIADELAAETRVLCFDEFE 140

Query: 191 VTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250
           VTDIADAMIL RL   LF  GVV+VATSN APD+LYK+GLQR  FLP ID++K++ +V +
Sbjct: 141 VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVN 200

Query: 251 LNSNIDYRSLKANAEESSTKTYFVK-NFANEKKLHGIFKLLCSQENDIVRPRVITIMGRN 309
           ++  +DYR  K          Y    +   E  L  ++  L     +      + I GR 
Sbjct: 201 VDGPVDYRLRKLEQAP----VYLTPLDAEAEAALDKLWAALSDGAPE--AAANLEIKGRE 254

Query: 310 VTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITL 369
           +      G +L   F +LC     +SDYL + + FHTV + +VPQ++   R ++RRFI L
Sbjct: 255 IRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIAL 314

Query: 370 IDALYDNNIRLVISSDVPLNKLFSNEA 396
           +D LYD  ++LV S++VPLN+L+    
Sbjct: 315 VDELYDRGVKLVASAEVPLNELYQGGR 341

Length = 367

>gnl|CDD|217821 pfam03969, AFG1_ATPase, AFG1-like ATPase

 Score =  274 bits (703), Expect = 4e-89
 Identities = 118/389 (30%), Positives = 182/389 (46%), Gaps = 61/389 (15%)

Query: 11  PSKQYYEKLSNNEIQEDKHQEQIVKQLDNVY--VSIKNYAPQSKSMFSFFQDKVKQ--PK 66
           P ++Y  +L    I  D  Q   V  LD +Y  +   ++  QS +    +  K      +
Sbjct: 3   PPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGRKRSHQPVR 62

Query: 67  GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYD 126
           GLY++G VG GKT LMD F+ES   ++K+R HF++FM  VH                   
Sbjct: 63  GLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHD------------------ 104

Query: 127 PGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICF 186
                 L  ++  +                           DP+P  A+   ++  L+CF
Sbjct: 105 -----ELTTLQGGD---------------------------DPLPIAADRFANEARLLCF 132

Query: 187 DEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYC 246
           DEF+V DI DAMIL RLF  LF  GV +VATSN AP+ LY+NGL R  FLP ID+L+++ 
Sbjct: 133 DEFEVDDIGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHF 192

Query: 247 DVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRV-ITI 305
           +V  ++  +DYR              +  + A    L  ++  L   E     P   + +
Sbjct: 193 EVVRVDGPVDYRLRTLEQAPLW---LYPLDGAAWAALDRLWDALTLGEPQ---PLSTLEV 246

Query: 306 MGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRR 365
             R        G ++  +F +LC      SDYL + + F TV + +VP +    + ++RR
Sbjct: 247 AARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARR 306

Query: 366 FITLIDALYDNNIRLVISSDVPLNKLFSN 394
           FI L+D LYD +++LV S++  L+ L+  
Sbjct: 307 FIALVDELYDRHVKLVASAEAALDDLYRG 335

This family of proteins contains a P-loop motif and are predicted to be ATPases. Length = 361

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)

Query: 137 KEEEEKEREREREREREREREREREREAKS 166
           K  EE+ERE+E+E+ERERERERE ER AK+
Sbjct: 595 KAREEREREKEKEKEREREREREAERAAKA 624

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 21/30 (70%), Positives = 27/30 (90%), Gaps = 1/30 (3%)

Query: 137 KEEEEKER-EREREREREREREREREREAK 165
           +E E+K R ERERE+E+E+EREREREREA+
Sbjct: 590 REAEQKAREEREREKEKEKEREREREREAE 619

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 137 KEEEEKEREREREREREREREREREREAKS 166
           +EE E+E+E+E+ERERERERE ER  +A S
Sbjct: 597 REEREREKEKEKEREREREREAERAAKASS 626

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 137 KEEEEKEREREREREREREREREREREAKSYDP 169
           + E EKE+E+ERERERERE ER  +  + S++ 
Sbjct: 599 EREREKEKEKEREREREREAERAAKASSSSHES 631

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 112 EVKKILARDKAKSYDPGVPNRL----DVMKEEEEKEREREREREREREREREREREAK 165
           E KK       K  DPG+PN      ++++E EEK+R++E E+ER +E  +    EA+
Sbjct: 20  EAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKERRKEARKAERAEAR 77

Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA. This family contains a potential nuclear localisation signal. Length = 80

>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812)

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAK 165
            R +  +  +E+++  E E +R+ E  +ERERE K
Sbjct: 91  ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125

This is a family of fungal proteins whose function is not known. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
KOG2383|consensus	467		100.0
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	100.0
COG1485	367	Predicted ATPase [General function prediction only	100.0
PRK08939	306	primosomal protein DnaI; Reviewed	99.79
PRK08181	269	transposase; Validated	99.76
PRK08116	268	hypothetical protein; Validated	99.75
PRK12377	248	putative replication protein; Provisional	99.69
COG1484	254	DnaC DNA replication protein [DNA replication, rec	99.69
PRK06526	254	transposase; Provisional	99.69
PRK09183	259	transposase/IS protein; Provisional	99.65
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	99.65
PRK06835	329	DNA replication protein DnaC; Validated	99.65
PRK06921	266	hypothetical protein; Provisional	99.61
PRK07952	244	DNA replication protein DnaC; Validated	99.6
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.57
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.55
PRK08084	235	DNA replication initiation factor; Provisional	99.49
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.47
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.45
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.44
PRK08727	233	hypothetical protein; Validated	99.44
PRK05642	234	DNA replication initiation factor; Validated	99.44
PRK12422	445	chromosomal replication initiation protein; Provis	99.42
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.41
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.37
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.36
PRK06893	229	DNA replication initiation factor; Validated	99.33
PRK06620	214	hypothetical protein; Validated	99.27
KOG0734|consensus	752		99.26
KOG0733|consensus	802		99.24
KOG0727|consensus	408		99.24
KOG0733|consensus	802		99.23
PRK09087	226	hypothetical protein; Validated	99.18
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.08
KOG0730|consensus	693		99.06
KOG0651|consensus	388		98.95
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.94
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.94
KOG0736|consensus	953		98.93
KOG0728|consensus	404		98.91
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.88
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.87
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.86
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.85
KOG0652|consensus	424		98.84
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.84
CHL00176	638	ftsH cell division protein; Validated	98.84
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.82
CHL00206	2281	ycf2 Ycf2; Provisional	98.81
PF00004	132	AAA: ATPase family associated with various cellula	98.8
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.79
KOG0729|consensus	435		98.77
KOG0735|consensus	952		98.76
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.74
KOG0731|consensus	774		98.72
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.72
CHL00195	489	ycf46 Ycf46; Provisional	98.71
KOG0726|consensus	440		98.7
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.68
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.67
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.5
PLN03025	319	replication factor C subunit; Provisional	98.48
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.47
KOG0739|consensus	439		98.37
PHA02544	316	44 clamp loader, small subunit; Provisional	98.37
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.36
PRK12402	337	replication factor C small subunit 2; Reviewed	98.35
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.29
KOG0732|consensus	1080		98.28
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.28
KOG0738|consensus	491		98.25
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.23
PRK04195	482	replication factor C large subunit; Provisional	98.21
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.18
KOG0730|consensus	693		98.17
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.15
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.15
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.13
smart00382	148	AAA ATPases associated with a variety of cellular	98.1
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.08
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.06
KOG0737|consensus	386		98.06
PRK13341	725	recombination factor protein RarA/unknown domain f	98.06
PHA02244	383	ATPase-like protein	98.05
PRK13342	413	recombination factor protein RarA; Reviewed	98.05
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.03
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.03
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.02
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.02
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.98
PHA00729	226	NTP-binding motif containing protein	97.96
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.96
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.91
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.88
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.87
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.86
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.85
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.84
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.82
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.81
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	97.79
PHA02774	613	E1; Provisional	97.77
PRK10865	857	protein disaggregation chaperone; Provisional	97.77
PRK10865	857	protein disaggregation chaperone; Provisional	97.75
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.73
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.73
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.72
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.71
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.71
PF13173	128	AAA_14: AAA domain	97.69
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.68
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.68
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.68
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.67
KOG0743|consensus	457		97.67
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.66
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.66
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.65
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.65
KOG0744|consensus	423		97.64
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.63
PRK13531	498	regulatory ATPase RavA; Provisional	97.62
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.61
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.61
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.6
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.6
CHL00095	821	clpC Clp protease ATP binding subunit	97.59
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.58
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.58
CHL00181	287	cbbX CbbX; Provisional	97.57
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.56
PRK04296	190	thymidine kinase; Provisional	97.55
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.55
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.53
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.53
PF05729	166	NACHT: NACHT domain	97.52
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.51
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.5
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.49
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.49
KOG2028|consensus	554		97.49
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.48
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.47
KOG0740|consensus	428		97.46
PRK13695	174	putative NTPase; Provisional	97.45
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.42
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.42
cd03246	173	ABCC_Protease_Secretion This family represents the	97.42
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.42
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.41
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.4
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.4
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.39
COG0714	329	MoxR-like ATPases [General function prediction onl	97.39
KOG0989|consensus	346		97.38
PRK06067	234	flagellar accessory protein FlaH; Validated	97.38
cd03239	178	ABC_SMC_head The structural maintenance of chromos	97.37
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.37
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.37
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.35
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.35
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.35
KOG0741|consensus	744		97.34
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.33
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.32
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.32
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.32
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.31
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.31
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.3
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.3
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.29
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.29
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.29
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.28
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.28
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.27
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.27
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.26
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.25
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.24
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.23
CHL00095	821	clpC Clp protease ATP binding subunit	97.23
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.23
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.2
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	97.2
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.19
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.19
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.16
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.16
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.15
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.14
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.13
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.12
smart00487	201	DEXDc DEAD-like helicases superfamily.	97.12
PRK13889	988	conjugal transfer relaxase TraA; Provisional	97.12
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.12
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.12
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.11
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	97.1
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.09
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.08
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.07
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.07
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	97.06
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	97.06
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.06
KOG0742|consensus	630		97.06
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.06
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.06
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.05
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.04
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.03
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.02
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.01
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.01
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.99
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.98
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.98
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.97
PTZ00293	211	thymidine kinase; Provisional	96.97
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.97
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.95
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.94
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	96.94
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.93
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.93
PRK08058	329	DNA polymerase III subunit delta'; Validated	96.92
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.91
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.9
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.9
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.9
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.89
PRK10536	262	hypothetical protein; Provisional	96.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.88
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.88
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.88
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.86
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	96.86
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.85
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.85
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.84
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.82
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.8
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.8
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.8
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.8
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.8
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.79
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.79
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.79
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	96.79
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.78
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.78
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.78
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.78
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.77
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	96.77
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.75
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.75
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.75
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	96.75
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.74
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.74
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.74
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.74
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.74
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.73
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.73
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.73
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.72
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.7
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.7
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.69
COG4133	209	CcmA ABC-type transport system involved in cytochr	96.68
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.68
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.67
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.67
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.66
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.65
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.64
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	96.64
PRK13826	1102	Dtr system oriT relaxase; Provisional	96.64
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.63
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.6
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.6
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.6
PRK05022	509	anaerobic nitric oxide reductase transcription reg	96.6
PRK11823	446	DNA repair protein RadA; Provisional	96.6
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	96.6
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.59
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.58
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.58
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.57
KOG0991|consensus	333		96.57
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	96.57
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.56
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	96.56
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.55
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.55
PRK10908	222	cell division protein FtsE; Provisional	96.55
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.54
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.52
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.51
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.51
PRK05707	328	DNA polymerase III subunit delta'; Validated	96.49
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.49
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.49
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.48
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.48
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.48
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.47
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.46
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.46
cd03299	235	ABC_ModC_like Archeal protein closely related to M	96.46
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.46
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.45
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.45
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.44
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.44
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.43
KOG1514|consensus	767		96.42
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.42
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.42
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	96.42
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.41
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.41
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.41
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	96.41
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	96.39
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.38
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.38
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.38
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.37
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.37
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	96.36
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.36
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	96.34
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.33
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.33
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	96.32
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.31
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	96.31
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.31
PRK15424	538	propionate catabolism operon regulatory protein Pr	96.3
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	96.3
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.3
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.29
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.29
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.29
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.28
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.28
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.28
PRK05973	237	replicative DNA helicase; Provisional	96.27
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	96.26
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.26
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.25
PRK07399	314	DNA polymerase III subunit delta'; Validated	96.24
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.24
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.23
KOG1051|consensus	898		96.23
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.22
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	96.22
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.21
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.2
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.2
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.19
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.18
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.17
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	96.17
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	96.16
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.16
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	96.16
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.15
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	96.14
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.14
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.14
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.14
PRK10938	490	putative molybdenum transport ATP-binding protein	96.13
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.13
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.12
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.12
cd00268	203	DEADc DEAD-box helicases. A diverse family of prot	96.11
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.11
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.1
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	96.1
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.08
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.08
PLN03211	659	ABC transporter G-25; Provisional	96.08
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.08
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.07
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	96.07
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.07
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.06
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	96.02
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	96.02
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.02
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.01
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.01
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	95.99
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.99
PF02572	172	CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase	95.94
cd01394	218	radB RadB. The archaeal protein radB shares simila	95.94
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	95.92
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.92
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	95.92
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	95.91
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.91
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	95.91
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	95.9
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	95.89
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	95.87
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.85
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	95.85
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.84
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.84
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.82
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	95.82
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	95.82
PRK00409	782	recombination and DNA strand exchange inhibitor pr	95.79
KOG0061|consensus	613		95.79
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.79
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.79
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	95.79
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.77
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.76
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	95.76
PRK08769	319	DNA polymerase III subunit delta'; Validated	95.75
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	95.74
PRK06964	342	DNA polymerase III subunit delta'; Validated	95.71
PRK03695	248	vitamin B12-transporter ATPase; Provisional	95.71
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	95.7
TIGR01587	358	cas3_core CRISPR-associated helicase Cas3. This mo	95.68
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	95.67
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.67
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	95.65
PRK15064	530	ABC transporter ATP-binding protein; Provisional	95.63
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.63
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	95.63
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.61
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	95.61
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.59
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	95.59
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	95.55
COG4988	559	CydD ABC-type transport system involved in cytochr	95.55
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	95.53
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.53
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	95.53
PRK04040	188	adenylate kinase; Provisional	95.52
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	95.52
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	95.51
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	95.51
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	95.5
COG1221	403	PspF Transcriptional regulators containing an AAA-	95.49
PRK13409	590	putative ATPase RIL; Provisional	95.48
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	95.47
KOG0735|consensus	952		95.47
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.46
PF07726	131	AAA_3: ATPase family associated with various cellu	95.45
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	95.45
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	95.45
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	95.43
PRK13709	1747	conjugal transfer nickase/helicase TraI; Provision	95.42
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.41
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.41
PF13245	76	AAA_19: Part of AAA domain	95.37
PRK00131	175	aroK shikimate kinase; Reviewed	95.34
PRK13409	590	putative ATPase RIL; Provisional	95.34
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	95.31
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	95.31
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.31
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	95.3
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.3
PTZ00424	401	helicase 45; Provisional	95.29
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	95.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.28
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.27
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	95.26
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	95.24
PRK10535	648	macrolide transporter ATP-binding /permease protei	95.22
PRK13764	602	ATPase; Provisional	95.21
KOG0056|consensus	790		95.2
PLN03232	1495	ABC transporter C family member; Provisional	95.18
PRK09862	506	putative ATP-dependent protease; Provisional	95.17
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	95.17
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.16
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.13
PRK04841	903	transcriptional regulator MalT; Provisional	95.11
PRK04328	249	hypothetical protein; Provisional	95.1
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	95.09
COG0606	490	Predicted ATPase with chaperone activity [Posttran	95.06
COG0410	237	LivF ABC-type branched-chain amino acid transport	95.05
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.0
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	94.99
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	94.98
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.97

>KOG2383|consensus

Probab=100.00  E-value=4.7e-99  Score=760.25  Aligned_cols=382  Identities=46%  Similarity=0.791  Sum_probs=339.9

Q ss_pred             CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCC---------Ccc----ccccc----------cCC
Q psy318            8 SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSI-KNYAPQSK---------SMF----SFFQD----------KVK   63 (438)
Q Consensus         8 ~~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l-~~~~~~~~---------~~~----~~~~~----------~~~   63 (438)
                      ..+|+..|..+|..|.++.|++|+.++..+.+|+.++ +.|.|.-+         +|.    +.|.+          .+.
T Consensus        33 ~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~~~~~~~~~e~~r~i~~l~k~~~~~k~~~~~a~~~~~  112 (467)
T KOG2383|consen   33 LLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGKLDTPNASGQPG  112 (467)
T ss_pred             ccCcchHHHhHhccCcccCCchhhhhHHHHHHHHhhhhhhcCccccccccchhhhhHHHHHHHHHhccCCCCcccccCCC
Confidence            4589999999999999999999999999999999954 44555421         111    11111          245


Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK  142 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (438)
                      +||||||||+||||||||||+||+++ ++.+|+|+|||.||+.||++||+++++.+..+.             +      
T Consensus       113 ~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~-------------~------  173 (467)
T KOG2383|consen  113 PPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKP-------------G------  173 (467)
T ss_pred             CCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCc-------------c------
Confidence            69999999999999999999999888 578899999999999999999999887632110             0      


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                        ..++...||++.||.+++.++.||||||||++|++|||+|.+||..|+..|+++|+||||+|
T Consensus       174 ------------------~a~~~~~Dpl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P  235 (467)
T KOG2383|consen  174 ------------------YAKSWEIDPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAP  235 (467)
T ss_pred             ------------------ccccccCCccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCCh
Confidence                              00112469999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCc
Q psy318          223 DDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPR  301 (438)
Q Consensus       223 ~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~  301 (438)
                      ++||+||+||+.|.|||+.|+++|.|+.|+|+.|||+...    ++++.||++++ +.+..++++|+.+++.+++...++
T Consensus       236 ~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR~~~~----~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~  311 (467)
T KOG2383|consen  236 EDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAK----SAGENYYFISETDVETVLKEWFKLLAADQNDGTRQR  311 (467)
T ss_pred             HHHhhcchhhhhhhhHHHHHHHhheEEecCCccchhhccC----CCCceeEecChhhHHHHHHHHHHHHhccCCCCCCCc
Confidence            9999999999999999999999999999999999995443    46677887777 889999999999998888777888


Q ss_pred             eeccCCceEEeccccCcEEEeeHHHHhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEE
Q psy318          302 VITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLV  381 (438)
Q Consensus       302 ~l~v~gR~l~v~~~~~~va~f~F~eLC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~  381 (438)
                      +++|+||+|.||++|++||+|||+|||++|+||+|||.||++||||+|+|||+|++.++|++||||||||+|||+++||+
T Consensus       312 ~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv  391 (467)
T KOG2383|consen  312 TLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLV  391 (467)
T ss_pred             ceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccccccCCCCChHHHHhHhhhccccCCCCCccccccccccccc
Q psy318          382 ISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTS  434 (438)
Q Consensus       382 ~~a~~~~~~Lf~~~~~~~~~~d~~R~~~~~l~~~~~~~~~~~~~~~~f~~~~~  434 (438)
                      |+|++|+++||.........++..|++|||++++.+.    ..++++|+|+|.
T Consensus       392 ~sa~~p~~~Lf~~~~~~e~ls~s~r~~mddl~iks~~----~~~~~mf~g~EE  440 (467)
T KOG2383|consen  392 CSAATPLEELFQFTGHSEALSDSPRTLMDDLGIKSDS----AGGSPMFSGEEE  440 (467)
T ss_pred             ecCCCCHHHHhcccCcccccccCcccchhhhcccccC----ccccccccchHH
Confidence            9999999999998887677889999999999999766    478889999985

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=100.00  E-value=2.7e-94  Score=735.05  Aligned_cols=349  Identities=45%  Similarity=0.809  Sum_probs=321.6

Q ss_pred             CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--Cccc-cccc--cCCCCCceEEEccCCCCHhHHHH
Q psy318            9 SLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSK--SMFS-FFQD--KVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus         9 ~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~--~~~~-~~~~--~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      |+|+++|+++|++|.+..|+.|.+++++|++++++|..+.++..  +++. +|++  ..++|+||||||+||+|||||||
T Consensus         1 ~tp~~~y~~~~~~~~~~~D~~q~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GlYl~G~vG~GKT~Lmd   80 (362)
T PF03969_consen    1 TTPLERYQARVAQGELFPDPAQRQAIEHLDRLYQELQKYKPARQSKSRLRKLFGRKPPPPPPKGLYLWGPVGRGKTMLMD   80 (362)
T ss_pred             CChHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHHHhccccchhhHHHHHHhcCCccCCCCceEEEECCCCCchhHHHH
Confidence            68999999999999999999999999999999999998776543  2333 4443  35679999999999999999999


Q ss_pred             HHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy318           84 IFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERERERERERERERE  163 (438)
Q Consensus        84 ~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  163 (438)
                      +||+++++++|+|+|||+||.++|++||++++                                                
T Consensus        81 ~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~------------------------------------------------  112 (362)
T PF03969_consen   81 LFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG------------------------------------------------  112 (362)
T ss_pred             HHHHhCCccccccccccHHHHHHHHHHHHHhC------------------------------------------------
Confidence            99999999999999999999999999998762                                                


Q ss_pred             ccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHH
Q psy318          164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLK  243 (438)
Q Consensus       164 ~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~  243 (438)
                        ..||+..+|+++++++.|||||||+++|++|||+|.+||+.|+++|++||+|||++|++||+||++|+.|+|+|++|+
T Consensus       113 --~~~~l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~  190 (362)
T PF03969_consen  113 --QDDPLPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLK  190 (362)
T ss_pred             --CCccHHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHH
Confidence              368999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCceeccCCceEEeccccCcEEEe
Q psy318          244 TYCDVASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEA  322 (438)
Q Consensus       244 ~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~~l~v~gR~l~v~~~~~~va~f  322 (438)
                      ++|+|++|++++|||+....    ....|++|.+ .+...++++|..++...  +..+.+|+|.||+|.|+++++++|||
T Consensus       191 ~~~~vv~ld~~~DyR~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~v~gR~i~v~~~~~~va~F  264 (362)
T PF03969_consen  191 RRCDVVELDGGVDYRRRGAP----PAPVYFYPLDEEADAALERLFQRLTGGE--PEEPRTLEVGGREIPVPRACGGVAWF  264 (362)
T ss_pred             hceEEEEecCCCchhhhccc----ccccccCcchHHHHHHHHHHHHHhcccc--CCCCceeEEeeeEEeeecccCCEEEe
Confidence            99999999999999998754    4568888877 77789999999998754  34677899999999999999999999


Q ss_pred             eHHHHhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhhccccccCCCCC
Q psy318          323 TFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS  402 (438)
Q Consensus       323 ~F~eLC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~Lf~~~~~~~~~~  402 (438)
                      +|+|||++|+|++||++||++|+||+|+|||+|+..++|+|||||+|||+|||++|+|+|+|++||++||.++..   ..
T Consensus       265 ~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~~~~~---~~  341 (362)
T PF03969_consen  265 DFDELCERPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQGGRL---AF  341 (362)
T ss_pred             cHHHhhccCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHhCCCc---hh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988773   57


Q ss_pred             hHHHHhHhhhcccc
Q psy318          403 DEHRMLMDDLNIKA  416 (438)
Q Consensus       403 d~~R~~~~~l~~~~  416 (438)
                      ++.|+++++..+..
T Consensus       342 ~f~RT~SRL~Em~~  355 (362)
T PF03969_consen  342 EFQRTASRLSEMQS  355 (362)
T ss_pred             hhhHHHHHHHHHhh
Confidence            99999999988764

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1485 Predicted ATPase [General function prediction only]

Probab=100.00  E-value=1.6e-93  Score=714.14  Aligned_cols=349  Identities=38%  Similarity=0.664  Sum_probs=323.2

Q ss_pred             CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH
Q psy318            8 SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus         8 ~~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .++|.++|.+++..|.+++|++|..++.+|++|++++.......+.+.++|++.+..|+|||||||||+|||||||+||+
T Consensus         8 ~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~   87 (367)
T COG1485           8 TMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYE   87 (367)
T ss_pred             CCCHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHh
Confidence            46999999999999999999999999999999999887654444433346766678899999999999999999999999


Q ss_pred             hhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy318           88 SCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSY  167 (438)
Q Consensus        88 ~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  167 (438)
                      ++|+++|+|+|||.||.++|++|+++++                                                  ..
T Consensus        88 ~lp~~~k~R~HFh~FM~~vH~~l~~l~g--------------------------------------------------~~  117 (367)
T COG1485          88 SLPGERKRRLHFHRFMARVHQRLHTLQG--------------------------------------------------QT  117 (367)
T ss_pred             hCCccccccccHHHHHHHHHHHHHHHcC--------------------------------------------------CC
Confidence            9999999999999999999999998863                                                  35


Q ss_pred             CCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc
Q psy318          168 DPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD  247 (438)
Q Consensus       168 d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~  247 (438)
                      ||++.+|++++.+++|||||||+++|++|||+|.+||+.|+++|+++|+|||++|++||+|||||++|+|+|++|+++|+
T Consensus       118 dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~  197 (367)
T COG1485         118 DPLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFE  197 (367)
T ss_pred             CccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCceeccCCceEEeccccCcEEEeeHHH
Q psy318          248 VASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDE  326 (438)
Q Consensus       248 vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~~l~v~gR~l~v~~~~~~va~f~F~e  326 (438)
                      |+++|+++|||++...    ....|++|.+ ++++.|+++|..++...  ...+.+|.|.||+|.|+..+++++||+|.+
T Consensus       198 v~~vD~~~DYR~r~l~----~a~~y~~Pl~~~~~~~l~~~~~~ls~~~--~~~~~~l~i~gR~i~~~~~~~~~~~f~f~~  271 (367)
T COG1485         198 VVNVDGPVDYRLRKLE----QAPVYLTPLDAEAEAALDKLWAALSDGA--PEAAANLEIKGREIRVPAVAGGLLWFDFAQ  271 (367)
T ss_pred             EEEecCCccccccccc----cCceeecCCcHHHHHHHHHHHHHhccCC--ccCCchhhccCceeecccccCcchhccHHH
Confidence            9999999999998875    4458999988 88899999999998743  245668999999999999999999999999


Q ss_pred             HhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhhccccccCCCCChHHH
Q psy318          327 LCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHR  406 (438)
Q Consensus       327 LC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~Lf~~~~~~~~~~d~~R  406 (438)
                      ||+.|+|+.|||+||++||||+|+|||.|+...+|+|||||+|||+|||+++||++||++||++||.++..   ..++.|
T Consensus       272 Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~~Sae~~~~~Ly~~~~~---afeF~R  348 (367)
T COG1485         272 LCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQGGRL---AFEFQR  348 (367)
T ss_pred             HhhCcCCHHHHHHHHhhccEEEEcCCCCCChhhhHHHHHHHHHHHHHHhcCCcEEEEccCCHHHhccCchh---hhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999885   468999


Q ss_pred             HhHhhhccc
Q psy318          407 MLMDDLNIK  415 (438)
Q Consensus       407 ~~~~~l~~~  415 (438)
                      ++++...+.
T Consensus       349 t~SRL~EMq  357 (367)
T COG1485         349 TLSRLQEMQ  357 (367)
T ss_pred             HHHHHHHHH
Confidence            999987664

>PRK08939 primosomal protein DnaI; Reviewed

Probab=99.79  E-value=1.9e-18  Score=173.76  Aligned_cols=139  Identities=18%  Similarity=0.304  Sum_probs=105.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhc--ccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCET--KQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~--~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      .++||||||++|+||||||.++++.+..  .....+|+.+|+.++...+..                             
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~-----------------------------  205 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD-----------------------------  205 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----------------------------
Confidence            4689999999999999999999999952  223566788887777543211                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC---hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD---IADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d---~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                +.+....+. +.+++|||||||+...   +....+|+.+++.++..+.++|+||
T Consensus       206 --------------------------~~~~~~l~~-l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS  258 (306)
T PRK08939        206 --------------------------GSVKEKIDA-VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS  258 (306)
T ss_pred             --------------------------CcHHHHHHH-hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence                                      011122333 5799999999999854   3333567888899988889999999


Q ss_pred             CCChhhhhcC------C-CCcCCcccHHHHHHhhccccccccccchhc
Q psy318          219 NRAPDDLYKN------G-LQRSNFLPFIDVLKTYCDVASLNSNIDYRS  259 (438)
Q Consensus       219 N~~P~~L~~~------g-l~r~~F~p~I~~L~~~~~vv~ld~g~DyR~  259 (438)
                      |.++++|...      | .+.....++++||.++|++|.+. |.|||.
T Consensus       259 Nl~~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~-G~s~R~  305 (306)
T PRK08939        259 NFDFDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLE-GKNRRN  305 (306)
T ss_pred             CCCHHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEee-cCCCCC
Confidence            9999999873      1 12334567999999999999999 899995

>PRK08181 transposase; Validated

Probab=99.76  E-value=8.8e-18  Score=166.11  Aligned_cols=144  Identities=18%  Similarity=0.216  Sum_probs=106.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      ..++|||+||+|+|||||+.++.+.+. .++.++.|..... +...+......                           
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~~~-L~~~l~~a~~~---------------------------  155 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRTTD-LVQKLQVARRE---------------------------  155 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeHHH-HHHHHHHHHhC---------------------------
Confidence            457899999999999999999998874 3456777766432 22233221110                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                                              ..+..+.+ .+.+++||||||++...  ..++..||+++|.+++. ..+|+|||.+
T Consensus       156 ------------------------~~~~~~l~-~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~  209 (269)
T PRK08181        156 ------------------------LQLESAIA-KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP  209 (269)
T ss_pred             ------------------------CcHHHHHH-HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence                                    01112233 34689999999999864  45567899999999987 5899999999


Q ss_pred             hhhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccc
Q psy318          222 PDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKAN  263 (438)
Q Consensus       222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~  263 (438)
                      |.+|..---+.....+++|||.++|+++.+. |.|||++.+.
T Consensus       210 ~~~w~~~~~D~~~a~aildRL~h~~~~i~~~-g~s~R~~~~~  250 (269)
T PRK08181        210 FGEWNRVFPDPAMTLAAVDRLVHHATIFEMN-VESYRRRTAL  250 (269)
T ss_pred             HHHHHHhcCCccchhhHHHhhhcCceEEecC-CccchhHHHH
Confidence            9999985334445567899999999999999 8999987643

>PRK08116 hypothetical protein; Validated

Probab=99.75  E-value=3.1e-17  Score=161.94  Aligned_cols=166  Identities=19%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318           26 EDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD  105 (438)
Q Consensus        26 ~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~  105 (438)
                      .++.|..|+....++.+....              ....+.|+||||++|+|||||+.++++.+... ..++.|..+-..
T Consensus        89 ~~~~~~~a~~~a~~y~~~~~~--------------~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~l  153 (268)
T PRK08116         89 FDKGSEKAYKIARKYVKKFEE--------------MKKENVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQL  153 (268)
T ss_pred             CChHHHHHHHHHHHHHHHHHh--------------hccCCceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHH
Confidence            345565566555555444321              01234689999999999999999999998543 556666554222


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEE
Q psy318          106 VHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLIC  185 (438)
Q Consensus       106 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc  185 (438)
                      +. .+.......                                                ....... ..+.+.+++||+
T Consensus       154 l~-~i~~~~~~~------------------------------------------------~~~~~~~-~~~~l~~~dlLv  183 (268)
T PRK08116        154 LN-RIKSTYKSS------------------------------------------------GKEDENE-IIRSLVNADLLI  183 (268)
T ss_pred             HH-HHHHHHhcc------------------------------------------------ccccHHH-HHHHhcCCCEEE
Confidence            22 111110000                                                0000111 233456899999


Q ss_pred             EecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318          186 FDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       186 ~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                      |||++....  .....|++++|.++..|.++|+|||.+|++|... ++    .++++||.++|.+|.+. |.|||....
T Consensus       184 iDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~-~~----~ri~sRl~e~~~~v~~~-g~d~R~~~~  256 (268)
T PRK08116        184 LDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQ-YG----KRIYDRILEMCTPVENE-GKSYRKEIA  256 (268)
T ss_pred             EecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-Hh----HHHHHHHHHcCEEEEee-CcChhHHHH
Confidence            999987532  2345699999999999999999999999999764 22    56889999999999999 899998764

>PRK12377 putative replication protein; Provisional

Probab=99.69  E-value=4.2e-16  Score=152.55  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=100.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      ..++||||++|+|||||+.++.+.+.. +...+.|..+. ++...+.......                           
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~-~l~~~l~~~~~~~---------------------------  151 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP-DVMSRLHESYDNG---------------------------  151 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH-HHHHHHHHHHhcc---------------------------
Confidence            478999999999999999999999863 34556655443 2222222211100                           


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                             ..... .-+.+.+++|||||||+..  ....+.+|+.+++.++..+.++|+|||.++
T Consensus       152 -----------------------~~~~~-~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~  207 (248)
T PRK12377        152 -----------------------QSGEK-FLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNH  207 (248)
T ss_pred             -----------------------chHHH-HHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCH
Confidence                                   00011 2233578999999999875  334567899999999999999999999999


Q ss_pred             hhhhcCCCCcCCcccHHHHHHhh-ccccccccccchhcccc
Q psy318          223 DDLYKNGLQRSNFLPFIDVLKTY-CDVASLNSNIDYRSLKA  262 (438)
Q Consensus       223 ~~L~~~gl~r~~F~p~I~~L~~~-~~vv~ld~g~DyR~~~~  262 (438)
                      ++|.+. +.    .++++||.+. |.+|.++ |.|||+..+
T Consensus       208 ~~l~~~-~~----~ri~dRl~~~~~~~v~~~-g~s~R~~~~  242 (248)
T PRK12377        208 EAMSTL-LG----ERVMDRMTMNGGRWVNFN-WESWRPNVS  242 (248)
T ss_pred             HHHHHH-hh----HHHHHHHhhCCCeEEEeC-CcCcccccc
Confidence            999863 22    4689999875 7899999 899998764

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=99.69  E-value=3.8e-16  Score=153.21  Aligned_cols=142  Identities=18%  Similarity=0.142  Sum_probs=108.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      .++|+||||++|+|||||+-|+.+.+. +++.++-|..   +|.++......                            
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~----------------------------  154 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE----------------------------  154 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHhc----------------------------
Confidence            578999999999999999999999997 6667777754   44444322111                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                 .....-..+.+.+++||+|||++...  ...+..+++++..+++.... ++||
T Consensus       155 ---------------------------~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~ts  206 (254)
T COG1484         155 ---------------------------GRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITS  206 (254)
T ss_pred             ---------------------------CchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeec
Confidence                                       00111134446799999999999953  33467788999999988766 9999


Q ss_pred             CCChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccc
Q psy318          219 NRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKAN  263 (438)
Q Consensus       219 N~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~  263 (438)
                      |.++.+|....-....-.+.+++|.++|+++.+. |.+||+....
T Consensus       207 N~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~~~~  250 (254)
T COG1484         207 NLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLNVRR  250 (254)
T ss_pred             CCChHHHHhhccCchhHHHHHHHHHhcceeeEec-chHhhhhccc
Confidence            9999999985333335578999999999999987 8999987654

>PRK06526 transposase; Provisional

Probab=99.69  E-value=1.6e-16  Score=155.98  Aligned_cols=143  Identities=19%  Similarity=0.140  Sum_probs=105.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      .+++|+|+||+|+|||||+.++...+. ..+.++.|...-..+ +.+......                           
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~t~~~l~-~~l~~~~~~---------------------------  147 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFATAAQWV-ARLAAAHHA---------------------------  147 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhhhHHHHH-HHHHHHHhc---------------------------
Confidence            467999999999999999999988774 346678885543322 222111100                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                                              ..+....+. +.++++|+|||++...  ...+.+|+.+++..++++ .+|+|||.+
T Consensus       148 ------------------------~~~~~~l~~-l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~  201 (254)
T PRK06526        148 ------------------------GRLQAELVK-LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP  201 (254)
T ss_pred             ------------------------CcHHHHHHH-hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence                                    001112233 3578999999999864  455668999999999875 699999999


Q ss_pred             hhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318          222 PDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                      |.+|+..--++....++++||.++|++|.+. |.|||.+.+
T Consensus       202 ~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~-g~s~R~~~~  241 (254)
T PRK06526        202 FGRWGEVFGDDVVAAAMIDRLVHHAEVISLK-GDSYRLKDR  241 (254)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhcCceEEeec-CCCcchhhh
Confidence            9999985334445567899999999999999 899998765

>PRK09183 transposase/IS protein; Provisional

Probab=99.65  E-value=7.3e-16  Score=151.46  Aligned_cols=145  Identities=15%  Similarity=0.171  Sum_probs=103.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK  142 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (438)
                      ....+++|+||+|+|||||+.++...+.. ...++.|-..- ++...+......                          
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~~-~l~~~l~~a~~~--------------------------  151 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAA-DLLLQLSTAQRQ--------------------------  151 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeHH-HHHHHHHHHHHC--------------------------
Confidence            34578999999999999999999877642 34566664321 111111111100                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                                               ..+..+.+..+..+++|||||++..  +..++..||.+++.+++++ .+|+|||.
T Consensus       152 -------------------------~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~  205 (259)
T PRK09183        152 -------------------------GRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL  205 (259)
T ss_pred             -------------------------CcHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence                                     0112234444567899999999985  3445568999999999886 58999999


Q ss_pred             ChhhhhcCC-CCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318          221 APDDLYKNG-LQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       221 ~P~~L~~~g-l~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                      +|.+|+..- -+.....++++||.++|++|.++ |.|||++..
T Consensus       206 ~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~-g~s~R~~~~  247 (259)
T PRK09183        206 PFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK  247 (259)
T ss_pred             CHHHHHHHhcCchhHHHHHHHHHhcceEEEeec-CCCCccccc
Confidence            999999862 23334567999999999999999 899998764

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=99.65  E-value=1.8e-16  Score=147.59  Aligned_cols=131  Identities=19%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      .++||||+|++|+|||||+.++...+-. ++..+-|-.+...+ ..+.....                            
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~-~~l~~~~~----------------------------   95 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLL-DELKQSRS----------------------------   95 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHH-HHHHCCHC----------------------------
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCcee-cccccccc----------------------------
Confidence            4689999999999999999999988743 45566665543322 22221110                            


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                                             .+......+. +.+++||+||||+....  .....||.+++.++++ .++|+|||.+
T Consensus        96 -----------------------~~~~~~~~~~-l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~-~~tIiTSN~~  150 (178)
T PF01695_consen   96 -----------------------DGSYEELLKR-LKRVDLLILDDLGYEPLSEWEAELLFEIIDERYER-KPTIITSNLS  150 (178)
T ss_dssp             -----------------------CTTHCHHHHH-HHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred             -----------------------ccchhhhcCc-cccccEecccccceeeecccccccchhhhhHhhcc-cCeEeeCCCc
Confidence                                   0011122333 45899999999999643  3345799999999986 4899999999


Q ss_pred             hhhhhcCCCCcCCcccHHHHHHhhcccc
Q psy318          222 PDDLYKNGLQRSNFLPFIDVLKTYCDVA  249 (438)
Q Consensus       222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv  249 (438)
                      |++|.+.--++....++++||.++|++|
T Consensus       151 ~~~l~~~~~d~~~a~aildRl~~~~~~i  178 (178)
T PF01695_consen  151 PSELEEVLGDRALAEAILDRLLHHCHVI  178 (178)
T ss_dssp             HHHHHT----------------------
T ss_pred             hhhHhhccccccccccccccccccccCC
Confidence            9999986556777889999999999986

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK06835 DNA replication protein DnaC; Validated

Probab=99.65  E-value=2.3e-15  Score=152.92  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      .+||||||++|+|||||+.++.+.+.. +..+|.|...-. +...+...+...                           
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~-l~~~l~~~~~~~---------------------------  233 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADE-LIEILREIRFNN---------------------------  233 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHH-HHHHHHHHHhcc---------------------------
Confidence            389999999999999999999998853 456788866533 333333221110                           


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                           ..+ .... -+.+.++|||||||++...  ..+...||.++|.++..+.++|+|||.+|
T Consensus       234 ---------------------~~~-~~~~-~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~  290 (329)
T PRK06835        234 ---------------------DKE-LEEV-YDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSL  290 (329)
T ss_pred             ---------------------chh-HHHH-HHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence                                 000 0011 2445689999999999853  44456799999999999999999999999


Q ss_pred             hhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318          223 DDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       223 ~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                      ++|... +.    .++.+||.++|.+|.+. |.|+|...+
T Consensus       291 ~el~~~-~~----eri~SRL~~~~~~i~~~-G~d~R~~~~  324 (329)
T PRK06835        291 EELLKT-YS----ERISSRLLGNFTLLKFY-GEDIRIKKN  324 (329)
T ss_pred             HHHHHH-Hh----HHHHHHHHcCCEEEEec-CcChhhHHH
Confidence            999753 21    35789999999999998 899998654

>PRK06921 hypothetical protein; Provisional

Probab=99.61  E-value=7.6e-15  Score=144.92  Aligned_cols=137  Identities=11%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      ..++|||||++|+|||||+.++.+.+.......+-|-.+...+. .+......                           
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~-~l~~~~~~---------------------------  167 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG-DLKDDFDL---------------------------  167 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH-HHHHHHHH---------------------------
Confidence            35789999999999999999999988543234555544322221 11111000                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-----C--ChhhHHHHHHHHHHHHHCCCEEEE
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-----T--DIADAMILKRLFTELFQLGVVVVA  216 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-----~--d~~da~iL~~Lfn~l~~~g~~lV~  216 (438)
                                                +.. ..+.+.+++||||||++.     .  ..-....||.++|.++..+.++|+
T Consensus       168 --------------------------~~~-~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIi  220 (266)
T PRK06921        168 --------------------------LEA-KLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILI  220 (266)
T ss_pred             --------------------------HHH-HHHHhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence                                      000 123356899999999954     1  122245799999999999899999


Q ss_pred             ecCCChhhhhcCCCCcCCcccHHHHHHhhcc--ccccccccchhcccc
Q psy318          217 TSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD--VASLNSNIDYRSLKA  262 (438)
Q Consensus       217 TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~--vv~ld~g~DyR~~~~  262 (438)
                      |||.+|.+|..-  +    .++.+||.++|.  ++.++ |.+||+..+
T Consensus       221 tsn~~~~el~~~--~----~~l~sRi~~r~~~~~i~~~-g~s~r~~~r  261 (266)
T PRK06921        221 SSELTIDELLDI--D----EALGSRIVEMCKDYLVIIK-GDSFELNHR  261 (266)
T ss_pred             ECCCCHHHHhhh--h----hHHHHHHHHhccCeEEEec-Ccccccchh
Confidence            999999999863  2    356677777665  78887 787887654

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.60  E-value=1.8e-14  Score=140.82  Aligned_cols=138  Identities=17%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE  145 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (438)
                      +|+||+|++|+|||||+.++.+.+.. .+.++.|... .++...+.......                            
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~-~~l~~~l~~~~~~~----------------------------  149 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV-ADIMSAMKDTFSNS----------------------------  149 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH-HHHHHHHHHHHhhc----------------------------
Confidence            59999999999999999999999853 3456666543 22222222110000                            


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318          146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVVVVATSNRAPD  223 (438)
Q Consensus       146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~lV~TSN~~P~  223 (438)
                                           ......+.+. +.++++|||||++.....+  ..+|+.+++.++....++|+|||.+|+
T Consensus       150 ---------------------~~~~~~~l~~-l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~  207 (244)
T PRK07952        150 ---------------------ETSEEQLLND-LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME  207 (244)
T ss_pred             ---------------------cccHHHHHHH-hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence                                 0001123333 4589999999999865332  457999999999988999999999999


Q ss_pred             hhhcCCCCcCCcccHHHHHH-hhccccccccccchhccc
Q psy318          224 DLYKNGLQRSNFLPFIDVLK-TYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       224 ~L~~~gl~r~~F~p~I~~L~-~~~~vv~ld~g~DyR~~~  261 (438)
                      +|... +.    .++++||. +++.+|.++ +.|||...
T Consensus       208 ~l~~~-~g----~ri~sRl~~~~~~~i~f~-~~s~R~~~  240 (244)
T PRK07952        208 EMTKL-LG----ERVMDRMRLGNSLWVIFN-WDSYRSRV  240 (244)
T ss_pred             HHHHH-hC----hHHHHHHHHCCceEEEee-CCcccccc
Confidence            99863 32    35789996 789999999 89999765

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.57  E-value=1.3e-14  Score=139.18  Aligned_cols=124  Identities=24%  Similarity=0.346  Sum_probs=86.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc-ccceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      +++||||++|+|||||+.++++.+.. ..+.|+.|   .+|+.++...+..   .                         
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~---~-------------------------   86 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD---G-------------------------   86 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT---T-------------------------
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc---c-------------------------
Confidence            57999999999999999999998842 23456666   4566665543322   1                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                                                 .+.. .++.++.+++|||||+|.+..  .++..|+++||.+.++|+++|+||+
T Consensus        87 ---------------------------~~~~-~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~  138 (219)
T PF00308_consen   87 ---------------------------EIEE-FKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD  138 (219)
T ss_dssp             ---------------------------SHHH-HHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             ---------------------------cchh-hhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence                                       1111 445567999999999999754  4478899999999999999999999


Q ss_pred             CChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          220 RAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       220 ~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      .+|.+|..  +.    ..+++||.. +-++.+.
T Consensus       139 ~~P~~l~~--~~----~~L~SRl~~-Gl~~~l~  164 (219)
T PF00308_consen  139 RPPSELSG--LL----PDLRSRLSW-GLVVELQ  164 (219)
T ss_dssp             S-TTTTTT--S-----HHHHHHHHC-SEEEEE-
T ss_pred             CCCccccc--cC----hhhhhhHhh-cchhhcC
Confidence            99999873  32    124555533 3345554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.55  E-value=2.1e-14  Score=148.93  Aligned_cols=135  Identities=20%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK  142 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (438)
                      .-+.||||||+|+||||||.++.+.+ ....+.|+.|-+--..+.+.+.+.+...+                        
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~------------------------  167 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEM------------------------  167 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhH------------------------
Confidence            35789999999999999999999988 34455678886655555554544443210                        


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                                                   .-.++.+ ++++|||||+|....  .+++.+|++||.+.+.|+.||+||.+
T Consensus       168 -----------------------------~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr  217 (408)
T COG0593         168 -----------------------------EKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR  217 (408)
T ss_pred             -----------------------------HHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence                                         1267778 999999999999654  45889999999999999999999999


Q ss_pred             ChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcc
Q psy318          221 APDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSL  260 (438)
Q Consensus       221 ~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~  260 (438)
                      +|.+|..-  .    .++.+|+.. +.++.+. +.|+..+
T Consensus       218 ~P~~l~~~--~----~rL~SR~~~-Gl~~~I~-~Pd~e~r  249 (408)
T COG0593         218 PPKELNGL--E----DRLRSRLEW-GLVVEIE-PPDDETR  249 (408)
T ss_pred             Cchhhccc--c----HHHHHHHhc-eeEEeeC-CCCHHHH
Confidence            99999842  1    123344433 2567777 5666544

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.49  E-value=3.3e-13  Score=130.59  Aligned_cols=114  Identities=17%  Similarity=0.317  Sum_probs=83.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE  145 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (438)
                      ..+|||||+|+|||||+.++.+.+.. ...++.|..+-....        ..                            
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~~~--------~~----------------------------   88 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKRAW--------FV----------------------------   88 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHHhh--------hh----------------------------
Confidence            57999999999999999999988753 356777766632110        00                            


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCC-EEEEecCCCh
Q psy318          146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGV-VVVATSNRAP  222 (438)
Q Consensus       146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~-~lV~TSN~~P  222 (438)
                                               .. +.+.+.++++|||||+|..  +..++..||++||.+++.|. .+|+|||.||
T Consensus        89 -------------------------~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p  142 (235)
T PRK08084         89 -------------------------PE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP  142 (235)
T ss_pred             -------------------------HH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence                                     00 1222346799999999986  45678889999999999885 7999999999


Q ss_pred             hhhhcCCCCcCCcccHHHHHHhhc---cccccc
Q psy318          223 DDLYKNGLQRSNFLPFIDVLKTYC---DVASLN  252 (438)
Q Consensus       223 ~~L~~~gl~r~~F~p~I~~L~~~~---~vv~ld  252 (438)
                      .+|..-          ...|+.+|   .++.+.
T Consensus       143 ~~l~~~----------~~~L~SRl~~g~~~~l~  165 (235)
T PRK08084        143 RQLNLG----------LPDLASRLDWGQIYKLQ  165 (235)
T ss_pred             HHcCcc----------cHHHHHHHhCCceeeec
Confidence            998742          23455566   566666

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.47  E-value=3.9e-13  Score=141.90  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhc-ccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      .+++||||++|+||||||.++.+.+.. ..+.++.|-.   |+.++...+   ....                       
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l---~~~~-----------------------  194 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL---QKTH-----------------------  194 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---HHhh-----------------------
Confidence            468999999999999999999998742 3345666644   443333222   1100                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                 +.+ .-+.+.+.++++|||||+|...  ...+..||.+||.+++.|.++|+||
T Consensus       195 ---------------------------~~~-~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlts  246 (450)
T PRK14087        195 ---------------------------KEI-EQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSS  246 (450)
T ss_pred             ---------------------------hHH-HHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence                                       000 1144456789999999999875  4456789999999999999999999


Q ss_pred             CCChhhhh
Q psy318          219 NRAPDDLY  226 (438)
Q Consensus       219 N~~P~~L~  226 (438)
                      |.+|.+|.
T Consensus       247 d~~P~~l~  254 (450)
T PRK14087        247 DKSPELLN  254 (450)
T ss_pred             CCCHHHHh
Confidence            99998884

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.45  E-value=3.9e-13  Score=145.56  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc-ccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      ++|||||++|+|||||+.++.+.+.. ....++.|-..-..+.+.+...+...                           
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~---------------------------  367 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGK---------------------------  367 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhcc---------------------------
Confidence            56999999999999999999998842 23456666554333322222221110                           


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                               + ...++.+.++++||||||+.+.  ..++..||++||.+++.|+.||+|||++|
T Consensus       368 -------------------------~-~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P  421 (617)
T PRK14086        368 -------------------------G-DSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP  421 (617)
T ss_pred             -------------------------H-HHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence                                     0 1144556789999999999974  34567899999999999999999999999


Q ss_pred             hhhh
Q psy318          223 DDLY  226 (438)
Q Consensus       223 ~~L~  226 (438)
                      .+|.
T Consensus       422 ~eL~  425 (617)
T PRK14086        422 KQLV  425 (617)
T ss_pred             Hhhh
Confidence            9986

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=6.1e-13  Score=134.82  Aligned_cols=146  Identities=25%  Similarity=0.345  Sum_probs=104.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+||||+||||||||||+|+.|.++..... =.|+-=.+|+       +++-+..++                     
T Consensus       181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-FIrvvgSElV-------qKYiGEGaR---------------------  231 (406)
T COG1222         181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-FIRVVGSELV-------QKYIGEGAR---------------------  231 (406)
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCce-EEEeccHHHH-------HHHhccchH---------------------
Confidence            46789999999999999999999999987432 2333333322       222221100                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----C---hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----D---IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----d---~~d---a~iL~~Lfn~l~-  208 (438)
                                       =.|.        +..+|++  +.+++++|||++.+     |   .+|   +..+..|+|+|- 
T Consensus       232 -----------------lVRe--------lF~lAre--kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG  284 (406)
T COG1222         232 -----------------LVRE--------LFELARE--KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG  284 (406)
T ss_pred             -----------------HHHH--------HHHHHhh--cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence                             0011        3456776  57999999999974     2   233   345667777773 


Q ss_pred             --HC-CCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318          209 --QL-GVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       209 --~~-g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                        .+ .+.||+++|++    |+-|.+++++|..-.|      ...+|+-|+..+++..++||.....
T Consensus       285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~  351 (406)
T COG1222         285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR  351 (406)
T ss_pred             CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence              22 36899999996    9999999999987666      4679999999999998999997654

>PRK08727 hypothetical protein; Validated

Probab=99.44  E-value=9.4e-13  Score=127.25  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=74.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE  145 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (438)
                      +.+||||++|+|||||+.++.+.+... ..++.|-.+ .+....+                                   
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~-~~~~~~~-----------------------------------   84 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPL-QAAAGRL-----------------------------------   84 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeH-HHhhhhH-----------------------------------
Confidence            569999999999999999999887533 456666542 1111000                                   


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318          146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAPD  223 (438)
Q Consensus       146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~  223 (438)
                                               .. +-+.+.++++||||||+...  ..++..+|+++|.+++.|+.+|+|||.+|.
T Consensus        85 -------------------------~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~  138 (233)
T PRK08727         85 -------------------------RD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD  138 (233)
T ss_pred             -------------------------HH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence                                     01 11234678999999999863  566788999999999999899999999999


Q ss_pred             hhhc
Q psy318          224 DLYK  227 (438)
Q Consensus       224 ~L~~  227 (438)
                      +|..
T Consensus       139 ~l~~  142 (233)
T PRK08727        139 GLAL  142 (233)
T ss_pred             hhhh
Confidence            9974

>PRK05642 DNA replication initiation factor; Validated

Probab=99.44  E-value=6.6e-13  Score=128.46  Aligned_cols=100  Identities=18%  Similarity=0.264  Sum_probs=75.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      ..++||||++|+|||||+.++.+.+.. +..++.|-..-. +....     .                            
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~-~~~~~-----~----------------------------   89 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE-LLDRG-----P----------------------------   89 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH-HHhhh-----H----------------------------
Confidence            368999999999999999999887743 245666655422 11100     0                            


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                                  -..+.+.++++|||||++...  ..++..||++||.+++.|+++|+|||.+|
T Consensus        90 ----------------------------~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p  141 (234)
T PRK05642         90 ----------------------------ELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP  141 (234)
T ss_pred             ----------------------------HHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence                                        022334678999999999864  45678899999999999999999999999


Q ss_pred             hhhhc
Q psy318          223 DDLYK  227 (438)
Q Consensus       223 ~~L~~  227 (438)
                      .+|..
T Consensus       142 ~~l~~  146 (234)
T PRK05642        142 RELPI  146 (234)
T ss_pred             HHcCc
Confidence            98864

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.42  E-value=1.1e-12  Score=138.29  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=77.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      .+++||||++|+|||||+.++.+.+... ..++.|-..-......+..++...                           
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~~~f~~~~~~~l~~~~---------------------------  192 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRSELFTEHLVSAIRSGE---------------------------  192 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeHHHHHHHHHHHHhcch---------------------------
Confidence            3689999999999999999999988532 345555433222221111111100                           


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                                                ....++.+.++++|+|||+|....  ..+..|+.+||.+++.|.++|+|||.+|
T Consensus       193 --------------------------~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p  246 (445)
T PRK12422        193 --------------------------MQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP  246 (445)
T ss_pred             --------------------------HHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence                                      112455567899999999999743  4567899999999999999999999999


Q ss_pred             hhhh
Q psy318          223 DDLY  226 (438)
Q Consensus       223 ~~L~  226 (438)
                      .+|.
T Consensus       247 ~~l~  250 (445)
T PRK12422        247 QDLK  250 (445)
T ss_pred             HHHh
Confidence            9986

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.41  E-value=1.6e-12  Score=136.83  Aligned_cols=108  Identities=27%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      .+++||||++|+||||||.++++.+... ...++.|   ++|+.++...+..   .                        
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~---~------------------------  182 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE---G------------------------  182 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc---c------------------------
Confidence            4679999999999999999999988432 2345665   5555555433211   0                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                  .+.........++++|||||++..-  ...+..|+++|+.+++.|..+|+||
T Consensus       183 ----------------------------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits  234 (440)
T PRK14088        183 ----------------------------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS  234 (440)
T ss_pred             ----------------------------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence                                        0111122222369999999999752  2334679999999999999999999


Q ss_pred             CCChhhhhc
Q psy318          219 NRAPDDLYK  227 (438)
Q Consensus       219 N~~P~~L~~  227 (438)
                      |.+|.+|..
T Consensus       235 d~~p~~l~~  243 (440)
T PRK14088        235 DREPQKLSE  243 (440)
T ss_pred             CCCHHHHHH
Confidence            999998853

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.37  E-value=2.3e-12  Score=135.69  Aligned_cols=107  Identities=24%  Similarity=0.327  Sum_probs=77.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      .+++||||++|+|||||+.++.+.+... ...++.|   .+|+.++...+   +..                        
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~---~~~------------------------  200 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL---RNN------------------------  200 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---HcC------------------------
Confidence            3679999999999999999999998422 1345555   44444443222   110                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEec
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                  .+.. ..+.+.++++|||||+|....  ..+..|+++||.+++.|..+|+||
T Consensus       201 ----------------------------~~~~-~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits  251 (450)
T PRK00149        201 ----------------------------TMEE-FKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTS  251 (450)
T ss_pred             ----------------------------cHHH-HHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence                                        0111 334456899999999998643  345679999999999999999999


Q ss_pred             CCChhhhhc
Q psy318          219 NRAPDDLYK  227 (438)
Q Consensus       219 N~~P~~L~~  227 (438)
                      |.+|.+|..
T Consensus       252 ~~~p~~l~~  260 (450)
T PRK00149        252 DRPPKELPG  260 (450)
T ss_pred             CCCHHHHHH
Confidence            999999863

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.36  E-value=3.2e-12  Score=132.61  Aligned_cols=110  Identities=21%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      ..++||||++|+|||||+.++++.+... .+.++.|-.......+.+......                           
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~---------------------------  188 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN---------------------------  188 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence            4689999999999999999999988432 135555544322222111111100                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                                               .+.. ..+.+.++++|+|||+|....  ..+..|+++|+.+++.|.++|+|||.+
T Consensus       189 -------------------------~~~~-~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~  242 (405)
T TIGR00362       189 -------------------------KMEE-FKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRP  242 (405)
T ss_pred             -------------------------CHHH-HHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence                                     0111 334456799999999998643  345679999999999999999999999


Q ss_pred             hhhhhc
Q psy318          222 PDDLYK  227 (438)
Q Consensus       222 P~~L~~  227 (438)
                      |.+|..
T Consensus       243 p~~l~~  248 (405)
T TIGR00362       243 PKELPG  248 (405)
T ss_pred             HHHHhh
Confidence            999874

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06893 DNA replication initiation factor; Validated

Probab=99.33  E-value=5.3e-12  Score=121.62  Aligned_cols=98  Identities=16%  Similarity=0.314  Sum_probs=70.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERER  146 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (438)
                      .+|||||+|+|||||+.++.+.+... ..++.|-.+..        .....                             
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~--------~~~~~-----------------------------   82 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSK--------SQYFS-----------------------------   82 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHH--------hhhhh-----------------------------
Confidence            58999999999999999999987433 34555544310        00000                             


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCE-EEEecCCChh
Q psy318          147 EREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVV-VVATSNRAPD  223 (438)
Q Consensus       147 ~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~-lV~TSN~~P~  223 (438)
                                              .. ..+.+.++++|||||++..  +..++..|+++||.+.+.|.. +|+|||.+|.
T Consensus        83 ------------------------~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~  137 (229)
T PRK06893         83 ------------------------PA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH  137 (229)
T ss_pred             ------------------------HH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence                                    00 1122457899999999985  456677899999999998764 5789999999


Q ss_pred             hhhc
Q psy318          224 DLYK  227 (438)
Q Consensus       224 ~L~~  227 (438)
                      +|..
T Consensus       138 ~l~~  141 (229)
T PRK06893        138 ALSI  141 (229)
T ss_pred             Hccc
Confidence            9873

>PRK06620 hypothetical protein; Validated

Probab=99.27  E-value=1.9e-11  Score=117.14  Aligned_cols=44  Identities=11%  Similarity=0.115  Sum_probs=37.9

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L  225 (438)
                      +..++||+||+|..   +...|+++||.+.+.|..+|+||+.+|..+
T Consensus        84 ~~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~~ilits~~~p~~l  127 (214)
T PRK06620         84 EKYNAFIIEDIENW---QEPALLHIFNIINEKQKYLLLTSSDKSRNF  127 (214)
T ss_pred             hcCCEEEEeccccc---hHHHHHHHHHHHHhcCCEEEEEcCCCcccc
Confidence            46799999999954   235799999999999999999999999854

>KOG0734|consensus

Probab=99.26  E-value=3.2e-11  Score=127.24  Aligned_cols=168  Identities=20%  Similarity=0.311  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHH
Q psy318           32 QIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIH  111 (438)
Q Consensus        32 ~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~  111 (438)
                      +|.++|+++.+=|++  |.  .+-+ +  ....||||+|.||||+|||||+.+++-...++     .||.-=.++.+-+-
T Consensus       311 EAK~ELeEiVefLkd--P~--kftr-L--GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGSEFdEm~V  378 (752)
T KOG0734|consen  311 EAKQELEEIVEFLKD--PT--KFTR-L--GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGSEFDEMFV  378 (752)
T ss_pred             HHHHHHHHHHHHhcC--cH--Hhhh-c--cCcCCCceEEeCCCCCchhHHHHHhhcccCCC-----eEeccccchhhhhh
Confidence            677788887777754  21  1111 1  34679999999999999999999998887666     44332222221100


Q ss_pred             HHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC
Q psy318          112 EVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV  191 (438)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v  191 (438)
                         +.-                                      ++|.|.        +...|+.  +.+++++|||++.
T Consensus       379 ---GvG--------------------------------------ArRVRd--------LF~aAk~--~APcIIFIDEiDa  407 (752)
T KOG0734|consen  379 ---GVG--------------------------------------ARRVRD--------LFAAAKA--RAPCIIFIDEIDA  407 (752)
T ss_pred             ---ccc--------------------------------------HHHHHH--------HHHHHHh--cCCeEEEEechhh
Confidence               000                                      112222        2233444  6799999999998


Q ss_pred             CC----hhhHHHHHHHHHHHH--------HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhcccc
Q psy318          192 TD----IADAMILKRLFTELF--------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVA  249 (438)
Q Consensus       192 ~d----~~da~iL~~Lfn~l~--------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv  249 (438)
                      +.    ..++....+.+|+|+        ..|+++|.++|+|    |+-+.+++|+|+...|      ..++|+.+...|
T Consensus       408 vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki  487 (752)
T KOG0734|consen  408 VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI  487 (752)
T ss_pred             hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence            53    233334555566654        4688889999995    4444568888887666      578999999999


Q ss_pred             ccccccchhcccc
Q psy318          250 SLNSNIDYRSLKA  262 (438)
Q Consensus       250 ~ld~g~DyR~~~~  262 (438)
                      .++.++|--...+
T Consensus       488 ~~~~~VD~~iiAR  500 (752)
T KOG0734|consen  488 PLDEDVDPKIIAR  500 (752)
T ss_pred             CcccCCCHhHhcc
Confidence            9998999876654

>KOG0733|consensus

Probab=99.24  E-value=3.2e-11  Score=128.79  Aligned_cols=142  Identities=24%  Similarity=0.387  Sum_probs=95.1

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH--HHHHHHHHHhhhcccCCCCCCCCCccccchH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH--AKIHEVKKILARDKAKSYDPGVPNRLDVMKE  138 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (438)
                      ...+|+||+||||||||||||++++...+.++         | ..|.  +.+...                      ...
T Consensus       219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vP---------f-~~isApeivSGv----------------------SGE  266 (802)
T KOG0733|consen  219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVP---------F-LSISAPEIVSGV----------------------SGE  266 (802)
T ss_pred             CCCCCCceeeeCCCCccHHHHHHHHhhhcCCc---------e-Eeecchhhhccc----------------------Ccc
Confidence            56789999999999999999999999999765         1 1111  111100                      011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhh-----H---HHHHHHHHHHHH
Q psy318          139 EEEKEREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIAD-----A---MILKRLFTELFQ  209 (438)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~d-----a---~iL~~Lfn~l~~  209 (438)
                      .+|+.+                           .++++-. ..+++++||||+.+.+..     .   .++.+|++.|-+
T Consensus       267 SEkkiR---------------------------elF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~  319 (802)
T KOG0733|consen  267 SEKKIR---------------------------ELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDE  319 (802)
T ss_pred             cHHHHH---------------------------HHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhc
Confidence            122222                           2232222 347999999999975422     2   367777777642


Q ss_pred             --------CCCEEEEecCCChhhhhc-----CCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318          210 --------LGVVVVATSNRAPDDLYK-----NGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       210 --------~g~~lV~TSN~~P~~L~~-----~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                              .++.||.|+|+| +.|.+     ++|+|++-+.      .-++|+..|.-+.+++..||++...
T Consensus       320 l~~~~~~g~~VlVIgATnRP-DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~  390 (802)
T KOG0733|consen  320 LSNEKTKGDPVLVIGATNRP-DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK  390 (802)
T ss_pred             ccccccCCCCeEEEecCCCC-cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence                    345678899995 66654     6778876543      4579999999999999999998653

>KOG0727|consensus

Probab=99.24  E-value=1.6e-11  Score=119.90  Aligned_cols=129  Identities=29%  Similarity=0.366  Sum_probs=88.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+|+|++||||||||||||+.+..++... .-.|+-=.+|+...       -+..++                |    
T Consensus       185 gidpprgvllygppg~gktml~kava~~t~a-~firvvgsefvqky-------lgegpr----------------m----  236 (408)
T KOG0727|consen  185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVGSEFVQKY-------LGEGPR----------------M----  236 (408)
T ss_pred             CCCCCcceEEeCCCCCcHHHHHHHHhhccch-heeeeccHHHHHHH-------hccCcH----------------H----
Confidence            3578999999999999999999999987642 23555555553322       111100                0    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~-  208 (438)
                                        .|       | +..+|++  ..+.+++|||++.+.        .+|   +.+|..|+|.+- 
T Consensus       237 ------------------vr-------d-vfrlake--napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg  288 (408)
T KOG0727|consen  237 ------------------VR-------D-VFRLAKE--NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG  288 (408)
T ss_pred             ------------------HH-------H-HHHHHhc--cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence                              00       0 2344555  558999999999742        222   567888888873 


Q ss_pred             -HC--CCEEEEecCCC----hhhhhcCCCCcCCcccHHHHHHhh
Q psy318          209 -QL--GVVVVATSNRA----PDDLYKNGLQRSNFLPFIDVLKTY  245 (438)
Q Consensus       209 -~~--g~~lV~TSN~~----P~~L~~~gl~r~~F~p~I~~L~~~  245 (438)
                       +.  ++.+|+++|++    |+-|.+++|+|..-.|.-++-+.+
T Consensus       289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr  332 (408)
T KOG0727|consen  289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR  332 (408)
T ss_pred             cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence             33  46799999995    999999999999887766654444

>KOG0733|consensus

Probab=99.23  E-value=3.5e-11  Score=128.48  Aligned_cols=147  Identities=24%  Similarity=0.366  Sum_probs=98.7

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+|.|++||||||||||.|+.+.++..-..   -+|-     .--+.|.++-+..                       
T Consensus       541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~N---FisV-----KGPELlNkYVGES-----------------------  589 (802)
T KOG0733|consen  541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN---FISV-----KGPELLNKYVGES-----------------------  589 (802)
T ss_pred             CCCCCCceEEeCCCCccHHHHHHHHhhhccCc---eEee-----cCHHHHHHHhhhH-----------------------
Confidence            45789999999999999999999999876321   0110     0012333333221                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhhHHHHHHHHHHHH----
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IADAMILKRLFTELF----  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~da~iL~~Lfn~l~----  208 (438)
                          +      |     ..|.          ...+.....++|++||||+.+.        .....++.+|+..|-    
T Consensus       590 ----E------r-----AVR~----------vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~  644 (802)
T KOG0733|consen  590 ----E------R-----AVRQ----------VFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE  644 (802)
T ss_pred             ----H------H-----HHHH----------HHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc
Confidence                0      0     0011          1133445679999999999853        223445556655553    


Q ss_pred             HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHHhhcc--ccccccccchhccccc
Q psy318          209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLKTYCD--VASLNSNIDYRSLKAN  263 (438)
Q Consensus       209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~~~~~--vv~ld~g~DyR~~~~~  263 (438)
                      ..|+.||+++|+|    |+-|.+++|++-.|..+      .++|+.+..  -..+++.+|+--..+.
T Consensus       645 R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~  711 (802)
T KOG0733|consen  645 RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN  711 (802)
T ss_pred             ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence            4577899999997    99999999999999764      678888777  7778878888766543

>PRK09087 hypothetical protein; Validated

Probab=99.18  E-value=1e-10  Score=112.97  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=40.1

Q ss_pred             CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ++||+||++... .++..||++||.+++.|+.+|+||+.+|.+|..
T Consensus        89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~  133 (226)
T PRK09087         89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNV  133 (226)
T ss_pred             CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcc
Confidence            699999999874 446779999999999999999999999999974

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.08  E-value=4.1e-10  Score=115.73  Aligned_cols=146  Identities=18%  Similarity=0.204  Sum_probs=91.8

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ....|+||.||||||||||+++.+++..+..+      |  ++...-+.+.++-++.                      +
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~------~--i~vsa~eL~sk~vGEs----------------------E  193 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIE------P--IVMSAGELESENAGEP----------------------G  193 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC------e--EEEEHHHhhcCcCCcH----------------------H
Confidence            45789999999999999999999999988543      1  2223322222222111                      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh---hcCCeEEEecCCCCC---------hhhHHHHHHHHHHHH
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDII---SKTWLICFDEFQVTD---------IADAMILKRLFTELF  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~---~~~~lLc~DEf~v~d---------~~da~iL~~Lfn~l~  208 (438)
                      +.      -|+++                  ..|.+.+   .++++|+||||+..-         ...++....|++.+-
T Consensus       194 k~------IR~~F------------------~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D  249 (413)
T PLN00020        194 KL------IRQRY------------------REAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIAD  249 (413)
T ss_pred             HH------HHHHH------------------HHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhc
Confidence            11      11111                  1243332   468999999999642         123444455555431


Q ss_pred             ----------------HCCCEEEEecCCC----hhhhhcCCCCcCCccc----HHHHHHhhccccccccccchhccc
Q psy318          209 ----------------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP----FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       209 ----------------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p----~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                                      ..++.||+|+|+|    |+-+.++++++..++|    .+++|+.++.-..++ ..|..+..
T Consensus       250 ~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv  325 (413)
T PLN00020        250 NPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVS-REDVVKLV  325 (413)
T ss_pred             CCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCC-HHHHHHHH
Confidence                            3457899999995    5666668898887777    466788887777776 56665543

>KOG0730|consensus

Probab=99.06  E-value=3.6e-10  Score=121.82  Aligned_cols=145  Identities=26%  Similarity=0.386  Sum_probs=97.7

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH-HHHHHHHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD-VHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEE  139 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~-v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (438)
                      ...+||||++|||||||||+++.++.+.+...         |..- --+.+.++-+..                      
T Consensus       464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---------FlsvkgpEL~sk~vGeS----------------------  512 (693)
T KOG0730|consen  464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN---------FLSVKGPELFSKYVGES----------------------  512 (693)
T ss_pred             cCCCCceEEEECCCCcchHHHHHHHhhhhcCC---------eeeccCHHHHHHhcCch----------------------
Confidence            35789999999999999999999999887421         1100 011112222111                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH---
Q psy318          140 EEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF---  208 (438)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~---  208 (438)
                      ++..                |.        +..-|++  ..+++|+|||++.+..        ....+|.+|++.|.   
T Consensus       513 Er~i----------------r~--------iF~kAR~--~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e  566 (693)
T KOG0730|consen  513 ERAI----------------RE--------VFRKARQ--VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE  566 (693)
T ss_pred             HHHH----------------HH--------HHHHHhh--cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence            0000                00        1112333  3469999999998532        23456778887774   


Q ss_pred             -HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318          209 -QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       209 -~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                       ..++.||+++|+|    |+-|.+|++++-.+.|      .+++|+.+.+.+.++..+|.+....
T Consensus       567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~  631 (693)
T KOG0730|consen  567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ  631 (693)
T ss_pred             ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence             3356788999996    7778889999888776      5789999999999988888887654

>KOG0651|consensus

Probab=98.95  E-value=2.1e-09  Score=107.62  Aligned_cols=142  Identities=27%  Similarity=0.371  Sum_probs=88.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHH-HHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKI-HEVKKILARDKAKSYDPGVPNRLDVMKEE  139 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (438)
                      ...+|+|+.||||+|+|||+|+.+++.++-+.         |+.-+...+ .+.-++.+                     
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n---------fl~v~ss~lv~kyiGEsa---------------------  211 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVN---------FLKVVSSALVDKYIGESA---------------------  211 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhcCCc---------eEEeeHhhhhhhhcccHH---------------------
Confidence            67889999999999999999999999988543         222222111 11111100                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--------ChhhHHH---HHHHHHHHH
Q psy318          140 EEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--------DIADAMI---LKRLFTELF  208 (438)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--------d~~da~i---L~~Lfn~l~  208 (438)
                          ++ -|++.+|                    |++.  ..++|++||++..        ..++.++   |-+|.|.+.
T Consensus       212 ----Rl-IRemf~y--------------------A~~~--~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd  264 (388)
T KOG0651|consen  212 ----RL-IRDMFRY--------------------AREV--IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD  264 (388)
T ss_pred             ----HH-HHHHHHH--------------------Hhhh--CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence                00 0122222                    5553  3599999999974        2455555   445555553


Q ss_pred             H----CCCEEEEecCCC----hhhhhcCCCCcCCcccHH------HHHHhhccccccccccchhc
Q psy318          209 Q----LGVVVVATSNRA----PDDLYKNGLQRSNFLPFI------DVLKTYCDVASLNSNIDYRS  259 (438)
Q Consensus       209 ~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~I------~~L~~~~~vv~ld~g~DyR~  259 (438)
                      .    ..+.+|+|+|+|    |.-|.+++++|....|++      .+++-|...+..-+..||+-
T Consensus       265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~ea  329 (388)
T KOG0651|consen  265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEA  329 (388)
T ss_pred             cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHH
Confidence            2    346899999996    667777899998888854      34444555555555556653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.94  E-value=5.5e-09  Score=98.80  Aligned_cols=47  Identities=19%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             hcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318          179 SKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L  225 (438)
                      .+.++|+|||++..+.  .++..|+.+++.+...+..+|+|||.+|.++
T Consensus        89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~  137 (226)
T TIGR03420        89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence            4578999999998765  4477899999998888889999999988665

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.94  E-value=7.8e-09  Score=107.86  Aligned_cols=82  Identities=23%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             hcCCeEEEecCCCCC-----------hhhHHHHHHHHHHHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318          179 SKTWLICFDEFQVTD-----------IADAMILKRLFTELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP--  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d-----------~~da~iL~~Lfn~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p--  237 (438)
                      ..+.+|+|||++..-           ...+..+..+++.+-.    .++.+|+|||++    |+-+.++++++....|  
T Consensus       237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P  316 (398)
T PTZ00454        237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP  316 (398)
T ss_pred             cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence            467899999999641           1112345666666532    356789999974    4444456677665554  


Q ss_pred             ----HHHHHHhhccccccccccchhcc
Q psy318          238 ----FIDVLKTYCDVASLNSNIDYRSL  260 (438)
Q Consensus       238 ----~I~~L~~~~~vv~ld~g~DyR~~  260 (438)
                          ...+++.++....+..+.|+-..
T Consensus       317 ~~~~R~~Il~~~~~~~~l~~dvd~~~l  343 (398)
T PTZ00454        317 DRRQKRLIFQTITSKMNLSEEVDLEDF  343 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCcccCHHHH
Confidence                34567777776777666666543

>KOG0736|consensus

Probab=98.93  E-value=1.6e-09  Score=118.28  Aligned_cols=147  Identities=22%  Similarity=0.379  Sum_probs=97.9

Q ss_pred             cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCCCccc
Q psy318           57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVPNRLD  134 (438)
Q Consensus        57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (438)
                      +|+.......||+||||||||||.|+.|.+..++..      |    +.|  -+.|..+-++.                 
T Consensus       697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~------F----lSVKGPELLNMYVGqS-----------------  749 (953)
T KOG0736|consen  697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN------F----LSVKGPELLNMYVGQS-----------------  749 (953)
T ss_pred             hhhccccccceeEEECCCCCchHHHHHHHHhhceee------E----EeecCHHHHHHHhcch-----------------
Confidence            344445556899999999999999999998887532      1    111  12333332221                 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hh--HHHHHHHH
Q psy318          135 VMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------AD--AMILKRLF  204 (438)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~d--a~iL~~Lf  204 (438)
                                ++           -.|.          ...+.....+++|+|||++.+.+        +.  ..++.+|+
T Consensus       750 ----------E~-----------NVR~----------VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL  798 (953)
T KOG0736|consen  750 ----------EE-----------NVRE----------VFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL  798 (953)
T ss_pred             ----------HH-----------HHHH----------HHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence                      00           0011          11233335789999999998643        22  24677777


Q ss_pred             HHHH------HCCCEEEEecCCC----hhhhhcCCCCcCCccc-------HHHHHHhhccccccccccchhccc
Q psy318          205 TELF------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP-------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       205 n~l~------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      ..|-      ..++-||.++|||    |+-|.+|+|++-.|+-       -...|+.....+.+|.++|.+...
T Consensus       799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiA  872 (953)
T KOG0736|consen  799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIA  872 (953)
T ss_pred             HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence            7764      2346788999997    7888888887665543       357888889999999999998754

>KOG0728|consensus

Probab=98.91  E-value=1.4e-08  Score=99.44  Aligned_cols=145  Identities=24%  Similarity=0.328  Sum_probs=100.1

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ....|||++||||||+|||.|+.+.++..... -.|+.=.+.++..       -+...                      
T Consensus       177 GIaQPKGvlLygppgtGktLlaraVahht~c~-firvsgselvqk~-------igegs----------------------  226 (404)
T KOG0728|consen  177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSELVQKY-------IGEGS----------------------  226 (404)
T ss_pred             CCCCCcceEEecCCCCchhHHHHHHHhhcceE-EEEechHHHHHHH-------hhhhH----------------------
Confidence            45789999999999999999999999876422 3455443332221       11100                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~-  208 (438)
                                      +-.|.        +...|++  ..+.+++.||++.+.        .+|   +.-+..|+|+|. 
T Consensus       227 ----------------rmvre--------lfvmare--hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg  280 (404)
T KOG0728|consen  227 ----------------RMVRE--------LFVMARE--HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG  280 (404)
T ss_pred             ----------------HHHHH--------HHHHHHh--cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence                            00001        2334555  458999999999742        223   233556777763 


Q ss_pred             ---HCCCEEEEecCC----ChhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          209 ---QLGVVVVATSNR----APDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       209 ---~~g~~lV~TSN~----~P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                         ..+..+|+++|+    .|+-|.+++++|..-.|      ..++|+-|+..+++..|.|.|...
T Consensus       281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia  346 (404)
T KOG0728|consen  281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA  346 (404)
T ss_pred             cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH
Confidence               234679999998    59999999999886544      688999999999999999999764

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.88  E-value=9.3e-09  Score=98.13  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      .+++++|+|++|+|||||+.++++.+..+ ...+.|-+.-....                                    
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i~~~~~~~------------------------------------   83 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYG-GRNARYLDAASPLL------------------------------------   83 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEehHHhHH------------------------------------
Confidence            35789999999999999999999887433 33444433211100                                    


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCC-EEEEecCCCh
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGV-VVVATSNRAP  222 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~-~lV~TSN~~P  222 (438)
                                                    ........++|+|||++..+...+..|+++++.+.+.+. .+|+|++.+|
T Consensus        84 ------------------------------~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~  133 (227)
T PRK08903         84 ------------------------------AFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP  133 (227)
T ss_pred             ------------------------------HHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence                                          001124689999999998877777789999999988876 4778888776


Q ss_pred             hhh
Q psy318          223 DDL  225 (438)
Q Consensus       223 ~~L  225 (438)
                      ..+
T Consensus       134 ~~~  136 (227)
T PRK08903        134 LAL  136 (227)
T ss_pred             HhC
Confidence            433

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.87  E-value=1e-08  Score=100.95  Aligned_cols=179  Identities=24%  Similarity=0.386  Sum_probs=103.7

Q ss_pred             ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           10 LPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        10 ~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +|-+.....+..-.+..=-.|..|.....-+.+=|++  |.  .    |+  .=+||.|++|||+|+||||++.++.+.+
T Consensus       106 ~~~~~~~e~~~~it~ddViGqEeAK~kcrli~~yLen--Pe--~----Fg--~WAPknVLFyGppGTGKTm~Akalane~  175 (368)
T COG1223         106 TPREEDREIISDITLDDVIGQEEAKRKCRLIMEYLEN--PE--R----FG--DWAPKNVLFYGPPGTGKTMMAKALANEA  175 (368)
T ss_pred             CcchhhhhhhccccHhhhhchHHHHHHHHHHHHHhhC--hH--H----hc--ccCcceeEEECCCCccHHHHHHHHhccc
Confidence            3444444433333332233799999988888777764  21  1    21  2368999999999999999999999988


Q ss_pred             hcccceeeech------hhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy318           90 ETKQKQRVHFN------KFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERERERERERERERE  163 (438)
Q Consensus        90 ~~~~k~R~Hf~------~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  163 (438)
                      .++-   +|-.      +.+.+-.+++|++-                                                 
T Consensus       176 kvp~---l~vkat~liGehVGdgar~Ihely-------------------------------------------------  203 (368)
T COG1223         176 KVPL---LLVKATELIGEHVGDGARRIHELY-------------------------------------------------  203 (368)
T ss_pred             CCce---EEechHHHHHHHhhhHHHHHHHHH-------------------------------------------------
Confidence            5541   1111      11222223333221                                                 


Q ss_pred             ccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHH---HHHHHHHHH--------HCCCEEEEecCCChhhhhcC--
Q psy318          164 AKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMI---LKRLFTELF--------QLGVVVVATSNRAPDDLYKN--  228 (438)
Q Consensus       164 ~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~i---L~~Lfn~l~--------~~g~~lV~TSN~~P~~L~~~--  228 (438)
                              .-|.+  ..+++++|||++.+  |..-|.+   +..+.|+|+        ..|++.|+++|+ |+-|.+.  
T Consensus       204 --------~rA~~--~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~-p~~LD~aiR  272 (368)
T COG1223         204 --------ERARK--AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR-PELLDPAIR  272 (368)
T ss_pred             --------HHHHh--cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC-hhhcCHHHH
Confidence                    12334  35899999999984  3222221   333344443        467889999999 5777663  


Q ss_pred             -CCCcCC-c-cc----HHHHHHhhccccccccccchhccc
Q psy318          229 -GLQRSN-F-LP----FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       229 -gl~r~~-F-~p----~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                       ++.-+. | +|    .+.+|+.....+.|.-..+.|...
T Consensus       273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~  312 (368)
T COG1223         273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA  312 (368)
T ss_pred             hhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH
Confidence             232221 1 22    466777777776665445555443

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.86  E-value=2.2e-08  Score=102.80  Aligned_cols=29  Identities=34%  Similarity=0.707  Sum_probs=26.2

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||+|||||+|+.++++.+.
T Consensus       153 ~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       153 IEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            45689999999999999999999998774

Many proteins may score above the trusted cutoff because an internal

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.85  E-value=2.3e-08  Score=103.90  Aligned_cols=83  Identities=23%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             hcCCeEEEecCCCCC-----------hhhHHHHHHHHHHHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318          179 SKTWLICFDEFQVTD-----------IADAMILKRLFTELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP--  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d-----------~~da~iL~~Lfn~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p--  237 (438)
                      ....+|+|||++.+-           ...+..+..+++.+-.    .++.+|+|+|++    |+-+.++++++....|  
T Consensus       223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P  302 (389)
T PRK03992        223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP  302 (389)
T ss_pred             cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence            356799999999751           1112234455544431    246788999984    3444445566554443  


Q ss_pred             ----HHHHHHhhccccccccccchhccc
Q psy318          238 ----FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       238 ----~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                          ..++|+.++.-+.+..+.|+....
T Consensus       303 ~~~~R~~Il~~~~~~~~~~~~~~~~~la  330 (389)
T PRK03992        303 DEEGRLEILKIHTRKMNLADDVDLEELA  330 (389)
T ss_pred             CHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence                356777777777777567766543

>KOG0652|consensus

Probab=98.84  E-value=2.7e-08  Score=98.03  Aligned_cols=146  Identities=21%  Similarity=0.351  Sum_probs=94.6

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+|||+++|||||+|||+++.+.......         +|+...--.+-+.-                     +.+..
T Consensus       201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~a---------TFLKLAgPQLVQMf---------------------IGdGA  250 (424)
T KOG0652|consen  201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNA---------TFLKLAGPQLVQMF---------------------IGDGA  250 (424)
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHHhccc---------hHHHhcchHHHhhh---------------------hcchH
Confidence            4678999999999999999999988665421         23222111111110                     00111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~-  208 (438)
                      + +               .|.        -.++|++  +.+.+++|||++.+.        .+|   +.-+..|+|+|- 
T Consensus       251 k-L---------------VRD--------AFaLAKE--kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG  304 (424)
T KOG0652|consen  251 K-L---------------VRD--------AFALAKE--KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG  304 (424)
T ss_pred             H-H---------------HHH--------HHHHhhc--cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence            0 0               011        1234555  568999999999742        122   334556777774 


Q ss_pred             ---HCCCEEEEecCC----ChhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318          209 ---QLGVVVVATSNR----APDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       209 ---~~g~~lV~TSN~----~P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                         ...+.+|+++|+    .|+-|..++|+|..-.|      .-.+++-|+..+++...+.|-...+
T Consensus       305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR  371 (424)
T KOG0652|consen  305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR  371 (424)
T ss_pred             CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence               234679999998    49999999999987665      3467888899999987888876554

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.84  E-value=3e-08  Score=105.90  Aligned_cols=55  Identities=27%  Similarity=0.396  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+..+..+|.++..-+.+  |.   .  +-......|+|++||||||||||+|+.++...+.
T Consensus        59 g~~~~k~~l~~~~~~l~~--~~---~--~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~  113 (495)
T TIGR01241        59 GIDEAKEELMEIVDFLKN--PS---K--FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG  113 (495)
T ss_pred             CHHHHHHHHHHHHHHHHC--HH---H--HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence            455666666666554432  10   0  0001246689999999999999999999987763

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>CHL00176 ftsH cell division protein; Validated

Probab=98.84  E-value=4.1e-08  Score=108.00  Aligned_cols=167  Identities=21%  Similarity=0.280  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA  108 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~  108 (438)
                      .+.++.++|..+..-+++..    . +.-+  ....|+|++||||||||||+|+.++...+..+- ..+...+|..... 
T Consensus       187 G~~~~k~~l~eiv~~lk~~~----~-~~~~--g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-i~is~s~f~~~~~-  257 (638)
T CHL00176        187 GIEEAKEEFEEVVSFLKKPE----R-FTAV--GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISGSEFVEMFV-  257 (638)
T ss_pred             ChHHHHHHHHHHHHHHhCHH----H-Hhhc--cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-eeccHHHHHHHhh-
Confidence            46666777777766554310    0 0001  235689999999999999999999988764321 1111122211100 


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHH-HHHhhcCCeEEEe
Q psy318          109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVA-NDIISKTWLICFD  187 (438)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va-~~~~~~~~lLc~D  187 (438)
                         .....                                                    .+..+. ......+++|+||
T Consensus       258 ---g~~~~----------------------------------------------------~vr~lF~~A~~~~P~ILfID  282 (638)
T CHL00176        258 ---GVGAA----------------------------------------------------RVRDLFKKAKENSPCIVFID  282 (638)
T ss_pred             ---hhhHH----------------------------------------------------HHHHHHHHHhcCCCcEEEEe
Confidence               00000                                                    000011 1112457899999


Q ss_pred             cCCCCC-----------hhhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHH
Q psy318          188 EFQVTD-----------IADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVL  242 (438)
Q Consensus       188 Ef~v~d-----------~~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L  242 (438)
                      |++.+.           ......|..|++.+-    ..++.+|+|+|++    |+-+.++++++....+      ..++|
T Consensus       283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL  362 (638)
T CHL00176        283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL  362 (638)
T ss_pred             cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence            998752           122344666665552    2456788999984    4555566777655433      35677


Q ss_pred             Hhhccccccccccchhc
Q psy318          243 KTYCDVASLNSNIDYRS  259 (438)
Q Consensus       243 ~~~~~vv~ld~g~DyR~  259 (438)
                      +.++.-..+....|+..
T Consensus       363 ~~~l~~~~~~~d~~l~~  379 (638)
T CHL00176        363 KVHARNKKLSPDVSLEL  379 (638)
T ss_pred             HHHHhhcccchhHHHHH
Confidence            77776555554455544

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.82  E-value=1.9e-08  Score=107.81  Aligned_cols=29  Identities=38%  Similarity=0.698  Sum_probs=26.6

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.|+|++||||||||||+++.++++.+.
T Consensus       213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       213 LKPPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            46789999999999999999999999884

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.81  E-value=1.5e-08  Score=119.71  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             hHHHHHHhhcCCeEEEecCCCCChhhHH--HHHHHHHHHH-------HCCCEEEEecCCC----hhhhhcCCCCcCCccc
Q psy318          171 PPVANDIISKTWLICFDEFQVTDIADAM--ILKRLFTELF-------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP  237 (438)
Q Consensus       171 ~~va~~~~~~~~lLc~DEf~v~d~~da~--iL~~Lfn~l~-------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p  237 (438)
                      ...|++  ..+++|.||||+.++..+..  .|..|++.|-       ..|+.||+|+|+|    |+-+.+|+++|....+
T Consensus      1725 FelARk--~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206       1725 FELAKA--MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred             HHHHHH--CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeC
Confidence            344555  46999999999998765532  2566667764       2356788999996    7778889999887654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.80  E-value=2.8e-08  Score=85.14  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=21.4

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |+||||+|+|||+|+..+.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999884

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.9e-08  Score=106.54  Aligned_cols=169  Identities=22%  Similarity=0.344  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA  108 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~  108 (438)
                      ...+|.++|.++.+-|++  |.  +   |..-...-|+|++|+||||+|||+|+.+....+.+|- ..+...+|+.... 
T Consensus       154 G~dEakeel~EiVdfLk~--p~--k---y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-f~iSGS~FVemfV-  224 (596)
T COG0465         154 GVDEAKEELSELVDFLKN--PK--K---YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-FSISGSDFVEMFV-  224 (596)
T ss_pred             CcHHHHHHHHHHHHHHhC--ch--h---hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-eeccchhhhhhhc-
Confidence            456888999998888864  21  1   1111236799999999999999999999999887762 3445555544332 


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318          109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE  188 (438)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE  188 (438)
                      .+-+                                            .+.|.        +..-|++  ..+++++|||
T Consensus       225 GvGA--------------------------------------------sRVRd--------LF~qAkk--~aP~IIFIDE  250 (596)
T COG0465         225 GVGA--------------------------------------------SRVRD--------LFEQAKK--NAPCIIFIDE  250 (596)
T ss_pred             CCCc--------------------------------------------HHHHH--------HHHHhhc--cCCCeEEEeh
Confidence            0000                                            00111        1111333  4578999999


Q ss_pred             CCCCCh---------hh--HHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHH
Q psy318          189 FQVTDI---------AD--AMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLK  243 (438)
Q Consensus       189 f~v~d~---------~d--a~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~  243 (438)
                      ++.+..         .|  ..-|.+|+-.+-    ..|+.+++++|+|    |+-|.+++++|+...+.      -++|+
T Consensus       251 iDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk  330 (596)
T COG0465         251 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK  330 (596)
T ss_pred             hhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH
Confidence            997531         11  112444444442    2567888999998    99999999999987664      35778


Q ss_pred             hhccccccccccchhcc
Q psy318          244 TYCDVASLNSNIDYRSL  260 (438)
Q Consensus       244 ~~~~vv~ld~g~DyR~~  260 (438)
                      -|..-+.+...+|+...
T Consensus       331 vH~~~~~l~~~Vdl~~i  347 (596)
T COG0465         331 VHAKNKPLAEDVDLKKI  347 (596)
T ss_pred             HHhhcCCCCCcCCHHHH
Confidence            78888888878888874

>KOG0729|consensus

Probab=98.77  E-value=2.2e-08  Score=98.81  Aligned_cols=136  Identities=26%  Similarity=0.343  Sum_probs=82.3

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+|||++||||||+|||.++.+..+....- -.||-=.+.       ++++-+..+                      
T Consensus       207 gidppkgvllygppgtgktl~aravanrtdac-firvigsel-------vqkyvgega----------------------  256 (435)
T KOG0729|consen  207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDAC-FIRVIGSEL-------VQKYVGEGA----------------------  256 (435)
T ss_pred             CCCCCCceEEeCCCCCchhHHHHHHhcccCce-EEeehhHHH-------HHHHhhhhH----------------------
Confidence            46789999999999999999999998865321 122222111       122222110                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC------C--hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT------D--IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~------d--~~d---a~iL~~Lfn~l~-  208 (438)
                                      +-.|.        +.+.|+.  +.+++++|||++..      |  .+|   +.-+..|+|+|- 
T Consensus       257 ----------------rmvre--------lf~mart--kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg  310 (435)
T KOG0729|consen  257 ----------------RMVRE--------LFEMART--KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG  310 (435)
T ss_pred             ----------------HHHHH--------HHHHhcc--cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC
Confidence                            00011        2222332  67999999999974      2  122   334556777764 


Q ss_pred             --HCC-CEEEEecCCC----hhhhhcCCCCcCCc--ccH----HHHHHhhccccccc
Q psy318          209 --QLG-VVVVATSNRA----PDDLYKNGLQRSNF--LPF----IDVLKTYCDVASLN  252 (438)
Q Consensus       209 --~~g-~~lV~TSN~~----P~~L~~~gl~r~~F--~p~----I~~L~~~~~vv~ld  252 (438)
                        .+| ..+++++|+|    |+-|.+++++|..-  +|-    -.+++-|...+.++
T Consensus       311 fdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve  367 (435)
T KOG0729|consen  311 FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE  367 (435)
T ss_pred             CCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc
Confidence              344 5788999997    88888899998643  332    23455555555555

>KOG0735|consensus

Probab=98.76  E-value=2.3e-08  Score=108.79  Aligned_cols=145  Identities=21%  Similarity=0.356  Sum_probs=95.2

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      +.+.+.|++||||||||||+|+.+...+.+..      |-.-  .--+.+.++-++.                       
T Consensus       697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~------fisv--KGPElL~KyIGaS-----------------------  745 (952)
T KOG0735|consen  697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLR------FISV--KGPELLSKYIGAS-----------------------  745 (952)
T ss_pred             CcccccceEEECCCCCcHHHHHHHHHhhCCee------EEEe--cCHHHHHHHhccc-----------------------
Confidence            44567999999999999999999998877421      1000  0012233332211                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH----
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF----  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~----  208 (438)
                                     .+..|.          -.-+.....+++|+||||+.+.+        -....+.+|+..|-    
T Consensus       746 ---------------Eq~vR~----------lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg  800 (952)
T KOG0735|consen  746 ---------------EQNVRD----------LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG  800 (952)
T ss_pred             ---------------HHHHHH----------HHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc
Confidence                           001111          11223345789999999998532        11345666777664    


Q ss_pred             HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      -.|+.+++++.||    |+-|.+|++++..+-|      .+++|+....-..++...|+-...
T Consensus       801 l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a  863 (952)
T KOG0735|consen  801 LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA  863 (952)
T ss_pred             cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence            2466778888886    8889999999988766      477888888888888788887654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.74  E-value=7.5e-08  Score=81.96  Aligned_cols=46  Identities=22%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-----CCCEEEEecCCChh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-----LGVVVVATSNRAPD  223 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-----~g~~lV~TSN~~P~  223 (438)
                      .....+|++||++.........+..+++.+..     .+..+|+|+|..+.
T Consensus        82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~  132 (151)
T cd00009          82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL  132 (151)
T ss_pred             cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence            35679999999998755444556677777653     56788999998765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0731|consensus

Probab=98.72  E-value=6.6e-08  Score=106.91  Aligned_cols=170  Identities=24%  Similarity=0.320  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA  108 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~  108 (438)
                      .+.+|.++|+++.+=|++  |.     .|-......|||++|.||||||||.|+.|.+-...+| =.-+.=.+|+..+. 
T Consensus       315 G~deAK~El~E~V~fLKN--P~-----~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-F~svSGSEFvE~~~-  385 (774)
T KOG0731|consen  315 GVDEAKEELMEFVKFLKN--PE-----QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSVSGSEFVEMFV-  385 (774)
T ss_pred             CcHHHHHHHHHHHHHhcC--HH-----HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-eeeechHHHHHHhc-
Confidence            588999999999887764  11     0111245789999999999999999999998877655 11111133332221 


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318          109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE  188 (438)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE  188 (438)
                            ...                                      ..+.|.        |...|+.  ..++++++||
T Consensus       386 ------g~~--------------------------------------asrvr~--------lf~~ar~--~aP~iifide  411 (774)
T KOG0731|consen  386 ------GVG--------------------------------------ASRVRD--------LFPLARK--NAPSIIFIDE  411 (774)
T ss_pred             ------ccc--------------------------------------hHHHHH--------HHHHhhc--cCCeEEEecc
Confidence                  000                                      000111        3334444  5689999999


Q ss_pred             CCCCC---------hhh---HHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHH
Q psy318          189 FQVTD---------IAD---AMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVL  242 (438)
Q Consensus       189 f~v~d---------~~d---a~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L  242 (438)
                      |+...         .++   +.-|.+|+-.+-    ..++++++++|+|    |+-|.+++++|..+..      ..+++
T Consensus       412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~  491 (774)
T KOG0731|consen  412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL  491 (774)
T ss_pred             cccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence            99742         111   223555555543    3456788899996    7888889999988765      35788


Q ss_pred             Hhhccccccc-cccchhccc
Q psy318          243 KTYCDVASLN-SNIDYRSLK  261 (438)
Q Consensus       243 ~~~~~vv~ld-~g~DyR~~~  261 (438)
                      +-|..-+.++ ...||....
T Consensus       492 ~~h~~~~~~~~e~~dl~~~a  511 (774)
T KOG0731|consen  492 KVHLRKKKLDDEDVDLSKLA  511 (774)
T ss_pred             HHHhhccCCCcchhhHHHHH
Confidence            8888888884 578898843

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.72  E-value=8.3e-08  Score=107.15  Aligned_cols=83  Identities=27%  Similarity=0.377  Sum_probs=55.5

Q ss_pred             hcCCeEEEecCCCCCh---------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCcccH---
Q psy318          179 SKTWLICFDEFQVTDI---------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF---  238 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~---------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~---  238 (438)
                      ....+|+|||++.+..         ....++..|+..+-    ..++.||+|+|+|    |+-+.++++++..+.|.   
T Consensus       545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~  624 (733)
T TIGR01243       545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE  624 (733)
T ss_pred             cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence            4578999999987421         11234455555553    2356788999995    66666778887776663   


Q ss_pred             ---HHHHHhhccccccccccchhccc
Q psy318          239 ---IDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       239 ---I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                         .++++.+..-+.++...|+....
T Consensus       625 ~~R~~i~~~~~~~~~~~~~~~l~~la  650 (733)
T TIGR01243       625 EARKEIFKIHTRSMPLAEDVDLEELA  650 (733)
T ss_pred             HHHHHHHHHHhcCCCCCccCCHHHHH
Confidence               56777777777777677776554

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.71  E-value=9e-08  Score=102.34  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=26.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .+.|+|++||||||||||+++.++.+.+..
T Consensus       256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~  285 (489)
T CHL00195        256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQL  285 (489)
T ss_pred             CCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            467899999999999999999999988743

>KOG0726|consensus

Probab=98.70  E-value=3.9e-08  Score=98.15  Aligned_cols=124  Identities=23%  Similarity=0.331  Sum_probs=81.6

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ...+||||.|||+||+|||.|+.+.++..+.         +|+.-+-..+-+.....++            .        
T Consensus       215 GikpPKGVIlyG~PGTGKTLLAKAVANqTSA---------TFlRvvGseLiQkylGdGp------------k--------  265 (440)
T KOG0726|consen  215 GIKPPKGVILYGEPGTGKTLLAKAVANQTSA---------TFLRVVGSELIQKYLGDGP------------K--------  265 (440)
T ss_pred             CCCCCCeeEEeCCCCCchhHHHHHHhcccch---------hhhhhhhHHHHHHHhccch------------H--------
Confidence            4578999999999999999999999998753         3555555433221111100            0        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~-  208 (438)
                                               .-.-+..+|.+  ..+.++++|||+.+.        .+.   +.-+..|+|+|- 
T Consensus       266 -------------------------lvRqlF~vA~e--~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG  318 (440)
T KOG0726|consen  266 -------------------------LVRELFRVAEE--HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG  318 (440)
T ss_pred             -------------------------HHHHHHHHHHh--cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence                                     00124566777  458999999999742        111   222446777763 


Q ss_pred             --HCC-CEEEEecCC----ChhhhhcCCCCcCCcccHHH
Q psy318          209 --QLG-VVVVATSNR----APDDLYKNGLQRSNFLPFID  240 (438)
Q Consensus       209 --~~g-~~lV~TSN~----~P~~L~~~gl~r~~F~p~I~  240 (438)
                        .+| +.||+++|+    .|+-+.+++++|..-.|.-+
T Consensus       319 FdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pD  357 (440)
T KOG0726|consen  319 FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD  357 (440)
T ss_pred             ccccCCeEEEEecccccccCHhhcCCCccccccccCCCc
Confidence              333 679999998    58889999999887655443

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.68  E-value=7.2e-08  Score=101.79  Aligned_cols=81  Identities=16%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             hcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH----HCCCEEEEecCCChhhhh-----cCCCCcCCccc-
Q psy318          179 SKTWLICFDEFQVTD--------IAD---AMILKRLFTELF----QLGVVVVATSNRAPDDLY-----KNGLQRSNFLP-  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~----~~g~~lV~TSN~~P~~L~-----~~gl~r~~F~p-  237 (438)
                      ....+|+|||++.+-        .++   +..+..+++.+.    ..++.||+|+|++ +.|.     ++.+++....| 
T Consensus       275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~-d~LDpaLlRpGRfd~~I~~~~  353 (438)
T PTZ00361        275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI-ESLDPALIRPGRIDRKIEFPN  353 (438)
T ss_pred             CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh-HHhhHHhccCCeeEEEEEeCC
Confidence            357899999998631        111   234566666663    2357889999983 4444     45566655544 


Q ss_pred             -----HHHHHHhhccccccccccchhcc
Q psy318          238 -----FIDVLKTYCDVASLNSNIDYRSL  260 (438)
Q Consensus       238 -----~I~~L~~~~~vv~ld~g~DyR~~  260 (438)
                           ..++++.+..-+.+..+.|+...
T Consensus       354 Pd~~~R~~Il~~~~~k~~l~~dvdl~~l  381 (438)
T PTZ00361        354 PDEKTKRRIFEIHTSKMTLAEDVDLEEF  381 (438)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcCcCHHHH
Confidence                 35677777666666656666544

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.2e-07  Score=101.03  Aligned_cols=146  Identities=25%  Similarity=0.349  Sum_probs=86.1

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ....|+|++||||||||||||+.++++.+.      .+|..+...  ..+.++-++.                      +
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~--~l~sk~vGes----------------------e  321 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGS--ELLSKWVGES----------------------E  321 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCH--HHhccccchH----------------------H
Confidence            356788999999999999999999988542      233222211  1122111110                      0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH----
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF----  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~----  208 (438)
                      +..+                .        +...|+  ...+++|+|||++..-.        ....++.+++..+-    
T Consensus       322 k~ir----------------~--------~F~~A~--~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~  375 (494)
T COG0464         322 KNIR----------------E--------LFEKAR--KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK  375 (494)
T ss_pred             HHHH----------------H--------HHHHHH--cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence            0000                0        111133  35789999999997421        11356677776663    


Q ss_pred             HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhcc--ccccccccchhcccc
Q psy318          209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCD--VASLNSNIDYRSLKA  262 (438)
Q Consensus       209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~--vv~ld~g~DyR~~~~  262 (438)
                      ..++.||.|+|+|    |+-+.+++|++..+.|      ..++++.++.  ...+....|++....
T Consensus       376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~  441 (494)
T COG0464         376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE  441 (494)
T ss_pred             cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence            2345678899985    5555667888777665      3566666666  332344677776543

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.50  E-value=7.3e-07  Score=98.44  Aligned_cols=81  Identities=22%  Similarity=0.320  Sum_probs=51.0

Q ss_pred             hcCCeEEEecCCCCCh-----------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318          179 SKTWLICFDEFQVTDI-----------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP--  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~-----------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p--  237 (438)
                      ..+.+|+|||++....           .....+..++..+-    ..++.+|+|+|+|    |.-+.+++++|....+  
T Consensus       243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P  322 (644)
T PRK10733        243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  322 (644)
T ss_pred             cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence            3578999999987521           11224555554442    2456788899984    4445556777765554  


Q ss_pred             ----HHHHHHhhccccccccccchhc
Q psy318          238 ----FIDVLKTYCDVASLNSNIDYRS  259 (438)
Q Consensus       238 ----~I~~L~~~~~vv~ld~g~DyR~  259 (438)
                          ...+|+.+...+.+....|+..
T Consensus       323 d~~~R~~Il~~~~~~~~l~~~~d~~~  348 (644)
T PRK10733        323 DVRGREQILKVHMRRVPLAPDIDAAI  348 (644)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcCCHHH
Confidence                4567787777777765666543

>PLN03025 replication factor C subunit; Provisional

Probab=98.48  E-value=1.1e-06  Score=88.81  Aligned_cols=58  Identities=12%  Similarity=0.276  Sum_probs=40.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...+++|||++......+..|.+.++. +...+.+|+++|.++.              ++.-|+.+|.++.+.
T Consensus        99 ~~kviiiDE~d~lt~~aq~aL~~~lE~-~~~~t~~il~~n~~~~--------------i~~~L~SRc~~i~f~  156 (319)
T PLN03025         99 RHKIVILDEADSMTSGAQQALRRTMEI-YSNTTRFALACNTSSK--------------IIEPIQSRCAIVRFS  156 (319)
T ss_pred             CeEEEEEechhhcCHHHHHHHHHHHhc-ccCCceEEEEeCCccc--------------cchhHHHhhhcccCC
Confidence            478999999999887767777666653 3345678889986431              234566677777776

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.47  E-value=1.1e-06  Score=87.21  Aligned_cols=48  Identities=29%  Similarity=0.355  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.+|.........              ....+++++||||+|+|||+|+.++.+.+.
T Consensus         8 G~~~~~~~l~~~l~~~~~--------------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635         8 GQEKVKEQLQLFIEAAKM--------------RQEALDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CHHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            477777777776544321              123457899999999999999999988774

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0739|consensus

Probab=98.37  E-value=1.4e-06  Score=87.50  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=27.4

Q ss_pred             cccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +|..+..+-+|++||||||+|||.|+.+......
T Consensus       158 lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn  191 (439)
T KOG0739|consen  158 LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN  191 (439)
T ss_pred             hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence            4433445569999999999999999999977664

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.37  E-value=5e-06  Score=83.00  Aligned_cols=59  Identities=19%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...++|+|||++.. ....+..|..+++.. ..++.+|+|+|.+.              .++..|+.+|.++.+.
T Consensus        99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~--------------~l~~~l~sR~~~i~~~  158 (316)
T PHA02544         99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKN--------------GIIEPLRSRCRVIDFG  158 (316)
T ss_pred             CCCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChh--------------hchHHHHhhceEEEeC
Confidence            35789999999987 433344555555542 35678999998632              1345677788777764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.36  E-value=1.7e-06  Score=96.79  Aligned_cols=29  Identities=34%  Similarity=0.705  Sum_probs=26.1

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||+|||||+|+.++.+.+.
T Consensus       209 i~~~~giLL~GppGtGKT~laraia~~~~  237 (733)
T TIGR01243       209 IEPPKGVLLYGPPGTGKTLLAKAVANEAG  237 (733)
T ss_pred             CCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence            46789999999999999999999988774

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.35  E-value=2.9e-06  Score=84.92  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++++||||+|+|||+++.++...+.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3699999999999999999998874

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.29  E-value=1.5e-06  Score=84.38  Aligned_cols=61  Identities=25%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           17 EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        17 ~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ..+.=..|..=..|.+++..|.-+.+..+.              .......++||||||+|||.|+..+.+.+..
T Consensus        16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~--------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~   76 (233)
T PF05496_consen   16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKK--------------RGEALDHMLFYGPPGLGKTTLARIIANELGV   76 (233)
T ss_dssp             HHTS-SSCCCS-S-HHHHHHHHHHHHHHHC--------------TTS---EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred             HhcCCCCHHHccCcHHHHhhhHHHHHHHHh--------------cCCCcceEEEECCCccchhHHHHHHHhccCC
Confidence            334444555556899999999888776542              1123457999999999999999999998853

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0732|consensus

Probab=98.28  E-value=1.3e-06  Score=99.32  Aligned_cols=128  Identities=24%  Similarity=0.391  Sum_probs=83.7

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      +..+|+|+++||+||+|||..+.+...+++.. .+++-|  ||..-..-+.++-+..                      +
T Consensus       295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~kisf--fmrkgaD~lskwvgEa----------------------E  349 (1080)
T KOG0732|consen  295 NITPPRGVLFHGPPGTGKTLMARALAAACSRG-NRKISF--FMRKGADCLSKWVGEA----------------------E  349 (1080)
T ss_pred             ccCCCcceeecCCCCCchhHHHHhhhhhhccc-ccccch--hhhcCchhhccccCcH----------------------H
Confidence            46789999999999999999999999999743 456666  6766655555443321                      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHH---HHHH
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFT---ELFQ  209 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn---~l~~  209 (438)
                      ..++                        -++..|++  .++.++.||||+-+.+        ..+.+...||.   .+-.
T Consensus       350 Rqlr------------------------llFeeA~k--~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds  403 (1080)
T KOG0732|consen  350 RQLR------------------------LLFEEAQK--TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS  403 (1080)
T ss_pred             HHHH------------------------HHHHHHhc--cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC
Confidence            1111                        13444655  5689999999995432        12334433333   3345


Q ss_pred             CC-CEEEEecCCC----hhhhhcCCCCcCCcccHH
Q psy318          210 LG-VVVVATSNRA----PDDLYKNGLQRSNFLPFI  239 (438)
Q Consensus       210 ~g-~~lV~TSN~~----P~~L~~~gl~r~~F~p~I  239 (438)
                      +| ++||.++||+    |+.-.+++++|+.+.|.-
T Consensus       404 RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp  438 (1080)
T KOG0732|consen  404 RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLP  438 (1080)
T ss_pred             CCceEEEcccCCccccchhhcCCcccceeEeeeCC
Confidence            66 4677899996    344456888998776643

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.28  E-value=5.9e-06  Score=83.66  Aligned_cols=48  Identities=25%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.+++..|..+......              ....+.+++||||+|+|||+|+.++.+.+.
T Consensus        29 G~~~~~~~l~~~l~~~~~--------------~~~~~~~~ll~GppG~GKT~la~~ia~~l~   76 (328)
T PRK00080         29 GQEKVKENLKIFIEAAKK--------------RGEALDHVLLYGPPGLGKTTLANIIANEMG   76 (328)
T ss_pred             CcHHHHHHHHHHHHHHHh--------------cCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence            688888888877655422              123467899999999999999999998874

>KOG0738|consensus

Probab=98.25  E-value=3.2e-06  Score=87.33  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=28.5

Q ss_pred             cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ||..-..+-|||+++||||+|||||+.+++..+.+
T Consensus       237 ~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t  271 (491)
T KOG0738|consen  237 FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT  271 (491)
T ss_pred             HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence            44323345699999999999999999999998864

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.23  E-value=9.2e-06  Score=92.41  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=37.7

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcC
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKN  228 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~  228 (438)
                      ....||+||||+..++.-..+|+++++.-+  +        +...+|+|||..+..|...
T Consensus       667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~  726 (852)
T TIGR03345       667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL  726 (852)
T ss_pred             CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh
Confidence            457999999999887765566777776543  1        3467899999998888763

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK04195 replication factor C large subunit; Provisional

Probab=98.21  E-value=1e-05  Score=86.41  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +++++||||+|+|||+++.++.+.+.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999988873

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.18  E-value=2.5e-05  Score=76.97  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=28.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      .+.|+|+|++|||||+|+.++...+. ..-.+++++.
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg-~~~~~i~~~~   56 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRD-RPVMLINGDA   56 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEEeCCc
Confidence            46799999999999999999987663 2345666654

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG0730|consensus

Probab=98.17  E-value=2.6e-06  Score=92.54  Aligned_cols=142  Identities=25%  Similarity=0.392  Sum_probs=84.6

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ..+.|+|+++|||||+|||+|++++.+...      .|+  |.....+-|++.-++.                      +
T Consensus       214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~--~~i~~peli~k~~gEt----------------------e  263 (693)
T KOG0730|consen  214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFL--FLINGPELISKFPGET----------------------E  263 (693)
T ss_pred             CCCCCCCccccCCCCCChHHHHHHHHHHhC------cee--EecccHHHHHhcccch----------------------H
Confidence            467899999999999999999999987653      222  3444444444432221                      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhc-CCeEEEecCCCCCh------h-hHHHHHHHHHHHH---H
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISK-TWLICFDEFQVTDI------A-DAMILKRLFTELF---Q  209 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~-~~lLc~DEf~v~d~------~-da~iL~~Lfn~l~---~  209 (438)
                      +.+|                          ..++.....+ ..++++||++.+.+      . ...+..+|+..+.   .
T Consensus       264 ~~LR--------------------------~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~  317 (693)
T KOG0730|consen  264 SNLR--------------------------KAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP  317 (693)
T ss_pred             HHHH--------------------------HHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC
Confidence            1111                          1112222233 78999999998643      1 2234444444443   2


Q ss_pred             CC-CEEEEecCCChhhhhc----CCCCcCCccc------HHHHHHhhccccccccccchhc
Q psy318          210 LG-VVVVATSNRAPDDLYK----NGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRS  259 (438)
Q Consensus       210 ~g-~~lV~TSN~~P~~L~~----~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~  259 (438)
                      .+ ++++.|+|+ |+.|.+    ++++++.+.-      ..++|+.++..+.+.+..|.-.
T Consensus       318 ~~~vivl~atnr-p~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~  377 (693)
T KOG0730|consen  318 DAKVIVLAATNR-PDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLED  377 (693)
T ss_pred             cCcEEEEEecCC-ccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHH
Confidence            23 456667777 466655    3566665432      4678888998888875555543

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.15  E-value=5.8e-06  Score=83.99  Aligned_cols=27  Identities=33%  Similarity=0.692  Sum_probs=24.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+..+|||||+|+|||+++..+++.+.
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~   65 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKELE   65 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998874

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.15  E-value=9.2e-06  Score=69.33  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      |||||++|+|||+|+..+...+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6999999999999999987766

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.13  E-value=8.3e-06  Score=83.82  Aligned_cols=27  Identities=37%  Similarity=0.656  Sum_probs=24.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..+||||++|+|||+++..+++.+.
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~   80 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEELE   80 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999999884

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.10  E-value=2.5e-05  Score=65.37  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      ++.++|+||+|+|||+++..+...+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4679999999999999999998888543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.08  E-value=2.8e-05  Score=77.09  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...+|++||++.........|..+++... ....+|+++|.+.              .+++.|+.+|.++.+.
T Consensus       102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~--------------~l~~~l~sr~~~~~~~  159 (319)
T PRK00440        102 PFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSS--------------KIIDPIQSRCAVFRFS  159 (319)
T ss_pred             CceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCcc--------------ccchhHHHHhheeeeC
Confidence            35799999999987655555666665533 3357788887541              1234466667666665

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.06  E-value=3.4e-05  Score=86.97  Aligned_cols=69  Identities=22%  Similarity=0.294  Sum_probs=44.3

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCC--CEEEEecCC--Chhhhhc-----CCCCcCCccc-----HHHHHHhh
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLG--VVVVATSNR--APDDLYK-----NGLQRSNFLP-----FIDVLKTY  245 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g--~~lV~TSN~--~P~~L~~-----~gl~r~~F~p-----~I~~L~~~  245 (438)
                      ...|||||||+.+....+.+|++||+.....+  +.||+.||.  -|..|.+     -+..+-.|.|     +.++|+.+
T Consensus       869 ~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~R  948 (1164)
T PTZ00112        869 NVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKER  948 (1164)
T ss_pred             cceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHH
Confidence            46799999999976556778999999876544  356678874  2334332     1222344555     46667666


Q ss_pred             ccc
Q psy318          246 CDV  248 (438)
Q Consensus       246 ~~v  248 (438)
                      ...
T Consensus       949 Ae~  951 (1164)
T PTZ00112        949 LEN  951 (1164)
T ss_pred             HHh
Confidence            553

>KOG0737|consensus

Probab=98.06  E-value=1.4e-05  Score=82.10  Aligned_cols=27  Identities=41%  Similarity=0.792  Sum_probs=24.4

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+|+|++||||||||||||+.+.....
T Consensus       125 ~p~kGiLL~GPpG~GKTmlAKA~Akea  151 (386)
T KOG0737|consen  125 RPPKGILLYGPPGTGKTMLAKAIAKEA  151 (386)
T ss_pred             cCCccceecCCCCchHHHHHHHHHHHc
Confidence            478999999999999999999997655

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.06  E-value=3.1e-05  Score=86.63  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++||||+|+|||+|+.++++.+
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998865

>PHA02244 ATPase-like protein

Probab=98.05  E-value=1.5e-05  Score=82.61  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=44.3

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC-CcCCcccHHHHHHhhc
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL-QRSNFLPFIDVLKTYC  246 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl-~r~~F~p~I~~L~~~~  246 (438)
                      +.+..+|+||||+...+.-+..|..++....          ..+..+|+|+|.+...+... + .+.   .+-+.+..++
T Consensus       178 ~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~-y~G~k---~L~~AllDRF  253 (383)
T PHA02244        178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHI-YVARN---KIDGATLDRF  253 (383)
T ss_pred             hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccc-cCCCc---ccCHHHHhhc
Confidence            3578999999999988766666666664321          13458999999987665321 1 111   1123444555


Q ss_pred             cccccc
Q psy318          247 DVASLN  252 (438)
Q Consensus       247 ~vv~ld  252 (438)
                      .+|.++
T Consensus       254 v~I~~d  259 (383)
T PHA02244        254 APIEFD  259 (383)
T ss_pred             EEeeCC
Confidence            566666

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.05  E-value=2.9e-05  Score=81.27  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=22.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +..++||||+|+|||+|+.++...+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998866

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.03  E-value=9.8e-06  Score=69.75  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-++|+|++|+|||+++..+...+.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            35699999999999999999998874

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.03  E-value=1.8e-05  Score=84.64  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=24.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.+++||||||+|||+++.+|...+.
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456799999999999999999998874

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.02  E-value=2.2e-05  Score=87.92  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             CCCCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           63 KQPKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      ..|.| ++++||+|+|||+|+.++...+. ..-.|+...+|+..-  .+..+-+..         +|   ...       
T Consensus       481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-~~~~~~d~se~~~~~--~~~~lig~~---------~g---yvg-------  538 (731)
T TIGR02639       481 NKPVGSFLFTGPTGVGKTELAKQLAEALG-VHLERFDMSEYMEKH--TVSRLIGAP---------PG---YVG-------  538 (731)
T ss_pred             CCCceeEEEECCCCccHHHHHHHHHHHhc-CCeEEEeCchhhhcc--cHHHHhcCC---------CC---Ccc-------
Confidence            34665 78999999999999999999884 234566655555421  111111110         00   000       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHH-hhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HC
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDI-ISKTWLICFDEFQVTDIADAMILKRLFTELF----------QL  210 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~-~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~  210 (438)
                                               .+....+...+ .....+|+|||++..++.-+..|.++++.-.          -+
T Consensus       539 -------------------------~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~  593 (731)
T TIGR02639       539 -------------------------FEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFR  593 (731)
T ss_pred             -------------------------cchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCC
Confidence                                     00000111111 1356899999999988765556666665421          02


Q ss_pred             CCEEEEecCCChhhhhc
Q psy318          211 GVVVVATSNRAPDDLYK  227 (438)
Q Consensus       211 g~~lV~TSN~~P~~L~~  227 (438)
                      .+.+|+|||..-..+.+
T Consensus       594 ~~iii~Tsn~g~~~~~~  610 (731)
T TIGR02639       594 NVILIMTSNAGASEMSK  610 (731)
T ss_pred             CCEEEECCCcchhhhhh
Confidence            34689999997666654

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.02  E-value=1.5e-05  Score=82.83  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=22.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .....||||||+|||.|+.++..+..
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~   73 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTN   73 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhC
Confidence            45699999999999999999988663

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.98  E-value=1.8e-05  Score=88.98  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CCC-ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           64 QPK-GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        64 ~pk-GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      .|. .++|+||+|+|||.|+.++...+. ..-.|++..+|+
T Consensus       486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-~~~i~id~se~~  525 (758)
T PRK11034        486 KPVGSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM  525 (758)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhC-CCcEEeechhhc
Confidence            344 489999999999999999988884 234566655554

>PHA00729 NTP-binding motif containing protein

Probab=97.96  E-value=4.4e-05  Score=74.26  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++|+|+||+|||||+.++...+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            369999999999999999998876

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.96  E-value=3.6e-05  Score=71.02  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE  145 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (438)
                      +.+|+++|.|||+++-...-.+. .+..|+.|-+||.--  ......++.-   +.-.-+..+.+-.+.. .+ ......
T Consensus         5 i~vy~g~G~Gkt~~a~g~~~ra~-~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~-~~-~~~~~~   78 (159)
T cd00561           5 IQVYTGNGKGKTTAALGLALRAL-GHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTT-EN-DEEDIA   78 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCC-CC-hHHHHH
Confidence            67999999999999888766654 457899999998762  1111111110   0000000111100000 00 000000


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          146 REREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+++.+                    ..|++.+  .++|+|+|||+...   ..-+...+..+++...+ +.-||+|+..
T Consensus        79 ~a~~~~--------------------~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~-~~evIlTGr~  137 (159)
T cd00561          79 AAAEGW--------------------AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE-DLELVLTGRN  137 (159)
T ss_pred             HHHHHH--------------------HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC-CCEEEEECCC
Confidence            111111                    1133333  46899999999973   23344556777776554 4689999999


Q ss_pred             Chhhhhc
Q psy318          221 APDDLYK  227 (438)
Q Consensus       221 ~P~~L~~  227 (438)
                      +|.+|-.
T Consensus       138 ~p~~l~e  144 (159)
T cd00561         138 APKELIE  144 (159)
T ss_pred             CCHHHHH
Confidence            9998865

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.91  E-value=8e-05  Score=76.79  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...|..++|+||+|+|||+++.++...+.
T Consensus        20 Gq~~~~~~l~~~~~~------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         20 GQKHIVTAISNGLSL------------------GRIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             ChHHHHHHHHHHHHc------------------CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            688888877665431                  13456789999999999999999998874

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.88  E-value=6e-05  Score=75.33  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++|+||||||||+++.+++..+.
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~   83 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILH   83 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999988887763

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00763 lon ATP-dependent protease La

Probab=97.87  E-value=3.4e-05  Score=87.03  Aligned_cols=33  Identities=27%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +.++||||||+|||+|+.++...+..+ ..|+.+
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~~-~~~i~~  380 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNRK-FVRFSL  380 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCC-eEEEeC
Confidence            469999999999999999999988432 334443

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.86  E-value=0.00011  Score=76.84  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.+++..|.+....=..+..       .+  ....|.+++||||+|+|||.++.+|...+-
T Consensus         9 Gq~~~~~~L~~~i~~~~~~~~-------~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~   61 (394)
T PRK07940          9 GQEAVVAELRAAARAARADVA-------AA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQ   61 (394)
T ss_pred             ChHHHHHHHHHHHHhcccccc-------cc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            588889888887654211100       01  123578899999999999999999988773

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.85  E-value=3.4e-06  Score=74.10  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD  105 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~  105 (438)
                      +|+|+|++|+|||.|+..++..+. ..-.+++.|..+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~-~~~~~i~~~~~~~~   38 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLG-RPVIRINCSSDTTE   38 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHT-CEEEEEE-TTTSTH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhh-cceEEEEecccccc
Confidence            589999999999999999999883 33456677665543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.84  E-value=8e-05  Score=65.25  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV  106 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v  106 (438)
                      +.|+|++|+|||+++..+...+.. +..++-|..+....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~   39 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI   39 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence            578999999999999999887754 45667676554443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00011  Score=78.44  Aligned_cols=45  Identities=27%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|..++..|......                  ...+..++||||+|+|||.++.+|...+.
T Consensus        21 VGQe~iv~~L~~~i~~------------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         21 IHQDLAIGALQNALKS------------------GKIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             hChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3688888777665431                  12356799999999999999999998885

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.81  E-value=0.00018  Score=67.94  Aligned_cols=158  Identities=19%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML  104 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~  104 (438)
                      ++++.|++|+..+-.                       ...+-.+|.|++|+|||++|..+...+... +.++.+-.+..
T Consensus         1 ~L~~~Q~~a~~~~l~-----------------------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~   56 (196)
T PF13604_consen    1 TLNEEQREAVRAILT-----------------------SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTN   56 (196)
T ss_dssp             -S-HHHHHHHHHHHH-----------------------CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSH
T ss_pred             CCCHHHHHHHHHHHh-----------------------cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcH
Confidence            368899998876421                       112458899999999999999998888643 57888866665


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCchHHHHHHhhcC
Q psy318          105 DVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAK---SYDPIPPVANDIISKT  181 (438)
Q Consensus       105 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~d~i~~va~~~~~~~  181 (438)
                      .....|.+.-....   ..         +.                       ........   ...+-       ....
T Consensus        57 ~Aa~~L~~~~~~~a---~T---------i~-----------------------~~l~~~~~~~~~~~~~-------~~~~   94 (196)
T PF13604_consen   57 KAAKELREKTGIEA---QT---------IH-----------------------SFLYRIPNGDDEGRPE-------LPKK   94 (196)
T ss_dssp             HHHHHHHHHHTS-E---EE---------HH-----------------------HHTTEECCEECCSSCC--------TST
T ss_pred             HHHHHHHHhhCcch---hh---------HH-----------------------HHHhcCCccccccccc-------CCcc
Confidence            55544443311100   00         00                       00000000   00000       3567


Q ss_pred             CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccccccchhcc
Q psy318          182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLNSNIDYRSL  260 (438)
Q Consensus       182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld~g~DyR~~  260 (438)
                      ++|++||....+...   +..|+......|..+|+.++.  .+|.+-+-.     .....+.+... .+.|.  .-+|..
T Consensus        95 ~vliVDEasmv~~~~---~~~ll~~~~~~~~klilvGD~--~QL~pV~~g-----~~~~~l~~~~~~~~~L~--~i~Rq~  162 (196)
T PF13604_consen   95 DVLIVDEASMVDSRQ---LARLLRLAKKSGAKLILVGDP--NQLPPVGAG-----SPFADLQESGGITVELT--EIRRQK  162 (196)
T ss_dssp             SEEEESSGGG-BHHH---HHHHHHHS-T-T-EEEEEE-T--TSHHHCSTT-----CHHHHHCGCSTTEEEE-----SCCC
T ss_pred             cEEEEecccccCHHH---HHHHHHHHHhcCCEEEEECCc--chhcCCcCC-----cHHHHHHhcCCCeEEeC--hhhcCC
Confidence            899999999988654   445555555668889988874  566654321     12334444444 67776  446654

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=97.79  E-value=0.00012  Score=67.88  Aligned_cols=124  Identities=17%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccc--eeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQK--QRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k--~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      .+..|+|+|++||||++++.++++..+.+.+  ..++...+-.+...  .++-+..    ...+ .+.            
T Consensus        21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e--~~LFG~~----~~~~-~~~------------   81 (168)
T PF00158_consen   21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLE--SELFGHE----KGAF-TGA------------   81 (168)
T ss_dssp             STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHH--HHHHEBC----SSSS-TTT------------
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhh--hhhhccc----cccc-ccc------------
Confidence            4578999999999999999999887654333  34444444333211  1121110    0000 000            


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCC
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELF----------QLG  211 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g  211 (438)
                                              ..+-.   ..--..+--.|+||||+.+...-+..|.++++.-.          ...
T Consensus        82 ------------------------~~~~~---G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~  134 (168)
T PF00158_consen   82 ------------------------RSDKK---GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVD  134 (168)
T ss_dssp             ------------------------SSEBE---HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred             ------------------------ccccC---CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcccccccccccc
Confidence                                    00000   11111356799999999999888887777776421          113


Q ss_pred             CEEEEecCCChhhhhcCCCCcC
Q psy318          212 VVVVATSNRAPDDLYKNGLQRS  233 (438)
Q Consensus       212 ~~lV~TSN~~P~~L~~~gl~r~  233 (438)
                      +.+|+|||.++.++-..|..|+
T Consensus       135 ~RiI~st~~~l~~~v~~g~fr~  156 (168)
T PF00158_consen  135 VRIIASTSKDLEELVEQGRFRE  156 (168)
T ss_dssp             EEEEEEESS-HHHHHHTTSS-H
T ss_pred             ceEEeecCcCHHHHHHcCCChH
Confidence            5799999999999988776553

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PHA02774 E1; Provisional

Probab=97.77  E-value=0.00022  Score=77.63  Aligned_cols=95  Identities=12%  Similarity=0.005  Sum_probs=54.0

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHC---------------CCEEEEecCCChhhhhcCCCCcCCcccHHHHHH
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQL---------------GVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLK  243 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~---------------g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~  243 (438)
                      .+++++++||+-  ...+..+--.|.+.|--.               ..++|+|||..+..-           +-..-|.
T Consensus       478 ~d~ki~vlDD~t--~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----------~~~~yL~  544 (613)
T PHA02774        478 ADAKIALLDDAT--HPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAE-----------DRYKYLH  544 (613)
T ss_pred             ccCCEEEEecCc--chHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccc-----------hhhHHhh
Confidence            478999999992  223332222222222111               157999999765541           1234466


Q ss_pred             hhccccccccccchhccccccccCCCceeecCchhHHHHHHHHHHHHcCC
Q psy318          244 TYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQ  293 (438)
Q Consensus       244 ~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~  293 (438)
                      .+..+++....-  =.     ...+...|.++...-...+.++|.+|--.
T Consensus       545 sRi~~f~F~n~~--P~-----d~~G~P~f~ltd~~WKsFF~rlw~~LdL~  587 (613)
T PHA02774        545 SRITVFEFPNPF--PL-----DENGNPVFELTDANWKSFFERLWSQLDLS  587 (613)
T ss_pred             hhEEEEECCCCC--Cc-----CCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence            666666665221  11     01244566666657788899999988643

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.77  E-value=0.00026  Score=80.80  Aligned_cols=48  Identities=23%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHH--HH--------CCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTEL--FQ--------LGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l--~~--------~g~~lV~TSN~~P~~L~~  227 (438)
                      ...+|+|||++..++.-+..|+++++.-  .+        +...+|+|||..+..|..
T Consensus       670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~  727 (857)
T PRK10865        670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE  727 (857)
T ss_pred             CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHH
Confidence            4589999999998877667777777542  11        223589999998776654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.75  E-value=0.0001  Score=84.18  Aligned_cols=44  Identities=16%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             cCCeEEEecCCCCChh----hHHHHHHHHHHHHHCC-CEEEEecCCChh
Q psy318          180 KTWLICFDEFQVTDIA----DAMILKRLFTELFQLG-VVVVATSNRAPD  223 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~----da~iL~~Lfn~l~~~g-~~lV~TSN~~P~  223 (438)
                      ...+|+|||+|.+..+    ..+-..+++.-..++| ..+|+|++..+-
T Consensus       271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~  319 (857)
T PRK10865        271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY  319 (857)
T ss_pred             CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence            4679999999986422    2334456666666777 578888888764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.73  E-value=0.00043  Score=67.19  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|+|++|+|||+|+..+++.+.
T Consensus        46 ~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        46 ILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhcC
Confidence            77999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.73  E-value=0.00022  Score=63.15  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=38.9

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      ..-.|+|+|++.++...+..|.+++...-....++|+||..++.++...|
T Consensus        69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~  118 (138)
T PF14532_consen   69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEG  118 (138)
T ss_dssp             TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHS
T ss_pred             CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhcc
Confidence            56789999999999888888877777644456899999999999877644

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.72  E-value=0.00015  Score=71.17  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=22.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+.+++||||||||||+|+.+++..+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.71  E-value=0.00022  Score=80.12  Aligned_cols=48  Identities=8%  Similarity=0.166  Sum_probs=34.2

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhhc
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKLF  392 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~Lf  392 (438)
                      ..|.+|++++|-.+   +.+...-|..++|.-+          =.++-+|+++...-+.+.
T Consensus       552 ~p~~VvllDEieka---~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~  609 (731)
T TIGR02639       552 HPHCVLLLDEIEKA---HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMS  609 (731)
T ss_pred             CCCeEEEEechhhc---CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhh
Confidence            46889999999876   5677778888888631          135668888876655443

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.71  E-value=0.00017  Score=74.01  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|++++||||+|+|||+++.++...+.
T Consensus        37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970         37 HLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999988774

>PF13173 AAA_14: AAA domain

Probab=97.69  E-value=0.00022  Score=62.35  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-+.|+|+-|+|||+||.-++..+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4589999999999999999987764

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.68  E-value=0.00027  Score=63.60  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh-hHHH-HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF-MLDV-HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f-m~~v-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      ...=+.|.|+.|+|||.|++++...++. .+-++.|+.- +... ....   ....      ++.+.             
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~---~~~i------~~~~q-------------   80 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEEL---RRRI------GYVPQ-------------   80 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHH---Hhce------EEEee-------------
Confidence            3456889999999999999999887753 4556666541 1110 0010   0000      00000             


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                         +..=+++|                  -.++..++.+++++|+||... +|......+.+++..+...+..+|++|+.
T Consensus        81 ---lS~G~~~r------------------~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~  139 (157)
T cd00267          81 ---LSGGQRQR------------------VALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD  139 (157)
T ss_pred             ---CCHHHHHH------------------HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence               00000011                  236888899999999999997 68877788889999887777778888776


Q ss_pred             C
Q psy318          221 A  221 (438)
Q Consensus       221 ~  221 (438)
                      .
T Consensus       140 ~  140 (157)
T cd00267         140 P  140 (157)
T ss_pred             H
Confidence            3

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.68  E-value=0.0002  Score=80.03  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..+++.|.+.++                  ....+..++|||+.|+|||.++.+|...+.
T Consensus        20 GQe~Vv~~L~~aL~------------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         20 GQEHVVRALTHALD------------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CcHHHHHHHHHHHh------------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            57777777766532                  113456789999999999999999988874

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.68  E-value=0.00016  Score=82.46  Aligned_cols=47  Identities=11%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhh
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKL  391 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~L  391 (438)
                      ..+.+|++++|-.+   +.+....|..++|.=.          =+++-+|+++....+.+
T Consensus       666 ~p~~vlllDeieka---~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~  722 (852)
T TIGR03346       666 KPYSVVLFDEVEKA---HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI  722 (852)
T ss_pred             CCCcEEEEeccccC---CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhH
Confidence            45779999999765   6677777777777531          14566999999866644

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.67  E-value=0.00038  Score=78.46  Aligned_cols=48  Identities=10%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHh--hh--------CCCeEEEEeCCChhhhc
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDAL--YD--------NNIRLVISSDVPLNKLF  392 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~l--Yd--------~~vkL~~~a~~~~~~Lf  392 (438)
                      ..+.+|++++|-.+   +.+....|..++|.=  .|        +++-+|+++....+.+.
T Consensus       556 ~p~sVlllDEieka---~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~  613 (758)
T PRK11034        556 HPHAVLLLDEIEKA---HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE  613 (758)
T ss_pred             CCCcEEEeccHhhh---hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHh
Confidence            45789999999887   456677888888843  22        35568888887766543

>KOG0743|consensus

Probab=97.67  E-value=5.5e-05  Score=79.53  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=25.6

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-.+|-+||||||||||.+..|.++.+.
T Consensus       232 kawKRGYLLYGPPGTGKSS~IaAmAn~L~  260 (457)
T KOG0743|consen  232 KAWKRGYLLYGPPGTGKSSFIAAMANYLN  260 (457)
T ss_pred             cchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence            34568999999999999999999999883

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.66  E-value=0.00046  Score=63.02  Aligned_cols=50  Identities=24%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.++|..+|++|...
T Consensus        92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  142 (163)
T cd03216          92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL  142 (163)
T ss_pred             HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46889999999999999986 788888888899988877787777877764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.66  E-value=0.00034  Score=77.26  Aligned_cols=44  Identities=27%  Similarity=0.354  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+.+..                  ...+..++|+|++|+|||+|+.+|...+.
T Consensus        20 GQe~vv~~L~~al~~------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         20 GQEHVVRALTHALEQ------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             CcHHHHHHHHHHHHh------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            577777777665432                  23457789999999999999999998885

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.65  E-value=0.00025  Score=80.57  Aligned_cols=45  Identities=22%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .|..++..|.+....                  ...+.-++||||+|+|||+++.+|...+..
T Consensus        20 GQe~Iv~~LknaI~~------------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc   64 (944)
T PRK14949         20 GQSHVLHALTNALTQ------------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNC   64 (944)
T ss_pred             CcHHHHHHHHHHHHh------------------CCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence            677777777665421                  133555689999999999999999998853

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.65  E-value=0.00061  Score=64.98  Aligned_cols=48  Identities=25%  Similarity=0.334  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      .+|+.+..++.+|+-||--- +|+.-+..+.+||+.+...|..||+++.
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATH  195 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH  195 (223)
T ss_pred             HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEec
Confidence            47899999999999999765 7998899999999999999987776654

>KOG0744|consensus

Probab=97.64  E-value=4.4e-05  Score=77.57  Aligned_cols=49  Identities=16%  Similarity=0.325  Sum_probs=33.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVK  114 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~  114 (438)
                      .+=++||||||+|||.|..++...+++.---|. ++.-|.++  |+...++-
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~liEinshsLFSKWF  227 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQLIEINSHSLFSKWF  227 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCcc-ccceEEEEehhHHHHHHH
Confidence            477999999999999999999999976533232 33334444  33344443

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.63  E-value=0.00041  Score=77.13  Aligned_cols=44  Identities=30%  Similarity=0.373  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...+.+++|+|++|+|||+++.+|...+.
T Consensus        20 GQe~vv~~L~~ai~~------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         20 GQEHVVKALQNALDE------------------GRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            577777777665431                  23467899999999999999999988874

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.62  E-value=0.00012  Score=78.29  Aligned_cols=28  Identities=11%  Similarity=0.244  Sum_probs=24.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+...++|+|+||+|||+|+.++...+.
T Consensus        37 lag~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         37 LSGESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             ccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence            3567899999999999999999988764

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.61  E-value=9.8e-05  Score=68.62  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhc-c--cceeeechhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCET-K--QKQRVHFNKFM  103 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~-~--~k~R~Hf~~fm  103 (438)
                      .++|.||.|+|||.|+.++...+-. .  .-.++-..+|-
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~   44 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS   44 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence            4889999999999999999998863 2  23444444443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00062  Score=76.40  Aligned_cols=119  Identities=17%  Similarity=0.304  Sum_probs=71.9

Q ss_pred             cCCCCCceEE-EccCCCCHhHHHHHHHHhhh--cccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccch
Q psy318           61 KVKQPKGLYI-YGAVGGGKTMLMDIFYESCE--TKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMK  137 (438)
Q Consensus        61 ~~~~pkGlyL-~G~vG~GKT~Lmd~f~~~l~--~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (438)
                      .+..|-|.+| -||+|+|||-|+.++...+-  .....|+-..+||..-  .+.++-+.             |++-.   
T Consensus       516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH--sVSrLIGa-------------PPGYV---  577 (786)
T COG0542         516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH--SVSRLIGA-------------PPGYV---  577 (786)
T ss_pred             CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH--HHHHHhCC-------------CCCCc---
Confidence            3455666555 99999999999999999983  2445677767776542  23333322             11111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC------
Q psy318          138 EEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLG------  211 (438)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g------  211 (438)
                                             |-  .+.--+....++  +-+.||+||||+.-++.    ++++|-+.++.|      
T Consensus       578 -----------------------Gy--eeGG~LTEaVRr--~PySViLlDEIEKAHpd----V~nilLQVlDdGrLTD~~  626 (786)
T COG0542         578 -----------------------GY--EEGGQLTEAVRR--KPYSVILLDEIEKAHPD----VFNLLLQVLDDGRLTDGQ  626 (786)
T ss_pred             -----------------------ee--ccccchhHhhhc--CCCeEEEechhhhcCHH----HHHHHHHHhcCCeeecCC
Confidence                                   00  000011111111  23789999999997765    556665555433      


Q ss_pred             --------CEEEEecCCChhhhhcC
Q psy318          212 --------VVVVATSNRAPDDLYKN  228 (438)
Q Consensus       212 --------~~lV~TSN~~P~~L~~~  228 (438)
                              ..+|+|||.--..+..+
T Consensus       627 Gr~VdFrNtiIImTSN~Gs~~i~~~  651 (786)
T COG0542         627 GRTVDFRNTIIIMTSNAGSEEILRD  651 (786)
T ss_pred             CCEEecceeEEEEecccchHHHHhh
Confidence                    35889999987777665

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.60  E-value=0.00034  Score=70.19  Aligned_cols=50  Identities=24%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      -.|.++.++|+-+.+.-+.              ...+.--++||||||.|||.|+..+.+.+.+
T Consensus        29 iGQ~~vk~~L~ifI~AAk~--------------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv   78 (332)
T COG2255          29 IGQEKVKEQLQIFIKAAKK--------------RGEALDHVLLFGPPGLGKTTLAHIIANELGV   78 (332)
T ss_pred             cChHHHHHHHHHHHHHHHh--------------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence            4699999999888766542              2345678999999999999999999998854

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.60  E-value=0.00058  Score=77.97  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~  227 (438)
                      ...+|+||||+..++.-+..|.++++.-.          -+.+.+|+|||.....+..
T Consensus       667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~  724 (852)
T TIGR03346       667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE  724 (852)
T ss_pred             CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence            45799999999988776666777775421          1335699999998776654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.59  E-value=0.00054  Score=77.95  Aligned_cols=118  Identities=15%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             CCCCc-eEEEccCCCCHhHHHHHHHHhhh--cccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318           63 KQPKG-LYIYGAVGGGKTMLMDIFYESCE--TKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEE  139 (438)
Q Consensus        63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~--~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (438)
                      ..|.| ++++||+|+|||.|+.++...+-  ...-.|+...+|+..-  .+.++-+.             |+...     
T Consensus       536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~--~~~~l~g~-------------~~gyv-----  595 (821)
T CHL00095        536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKH--TVSKLIGS-------------PPGYV-----  595 (821)
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccc--cHHHhcCC-------------CCccc-----
Confidence            44555 67999999999999999998873  2334555555554321  11111110             00000     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhhHHHHHHHHHHHH----------
Q psy318          140 EEKEREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIADAMILKRLFTELF----------  208 (438)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------  208 (438)
                                           |     .+....+...+. ....||+|||++..++.-...|.++++.-.          
T Consensus       596 ---------------------g-----~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~  649 (821)
T CHL00095        596 ---------------------G-----YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTID  649 (821)
T ss_pred             ---------------------C-----cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEe
Confidence                                 0     011111122221 235899999999988765566666666411          


Q ss_pred             HCCCEEEEecCCChhhhh
Q psy318          209 QLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       209 ~~g~~lV~TSN~~P~~L~  226 (438)
                      -....+|+|||.....+.
T Consensus       650 ~~~~i~I~Tsn~g~~~i~  667 (821)
T CHL00095        650 FKNTLIIMTSNLGSKVIE  667 (821)
T ss_pred             cCceEEEEeCCcchHHHH
Confidence            133568999999765443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.58  E-value=0.00066  Score=62.33  Aligned_cols=129  Identities=19%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH-HHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML-DVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK  142 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~-~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (438)
                      ...-+.|.|+.|+|||.|++++..-++ +..-+++|+.--. ....   ..+..-      ++.+.-+.....+.- .+-
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~---~~~~~i------~~~~q~~~~~~~~tv-~~~   93 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPE---EVKRRI------GYLPEEPSLYENLTV-REN   93 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchH---hhhccE------EEEecCCccccCCcH-HHH
Confidence            345589999999999999999987664 2344566643211 1000   111100      011111111111110 000


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ..+..-+++|                  -.+|+.++.++++|++||--. +|......+.+++..+.++|..+|++|..+
T Consensus        94 ~~LS~G~~qr------------------v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~  155 (173)
T cd03230          94 LKLSGGMKQR------------------LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL  155 (173)
T ss_pred             hhcCHHHHHH------------------HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            0011112221                  246899999999999999987 688888889999999987777777777664

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.58  E-value=0.00024  Score=65.88  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|..++|||++|+|||.++..|...+.
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            3467799999999999999999988874

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>CHL00181 cbbX CbbX; Provisional

Probab=97.57  E-value=0.00044  Score=69.33  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++|+||||||||+++.+++..+
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            348999999999999999998876

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.56  E-value=0.00057  Score=75.66  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=24.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+..++|+||+|+|||.++.+|..++.
T Consensus        35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         35 RLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467899999999999999999998874

>PRK04296 thymidine kinase; Provisional

Probab=97.55  E-value=0.00022  Score=66.98  Aligned_cols=38  Identities=26%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +.++|++||+|..+..+   +..+++.+...|+.+|+|+-.
T Consensus        78 ~~dvviIDEaq~l~~~~---v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         78 KIDCVLIDEAQFLDKEQ---VVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             CCCEEEEEccccCCHHH---HHHHHHHHHHcCCeEEEEecC
Confidence            68999999999876432   456788888899989888544

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.55  E-value=0.00057  Score=62.48  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             hcCCeEEEecCCCC-C---hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          179 SKTWLICFDEFQVT-D---IADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-d---~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      .++++|++|++... +   ......+.+++..+...|+.+|++++...
T Consensus        94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~  141 (187)
T cd01124          94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG  141 (187)
T ss_pred             hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence            46899999999974 3   22234567788888888988888877643

A related protein is found in archaea.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.53  E-value=0.00053  Score=69.34  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|.+++..|......                  ...|+.++||||+|+|||.++.++...+.
T Consensus        17 ig~~~~~~~l~~~~~~------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        17 IGQEHIVQTLKNAIKN------------------GRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             cCcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4677777777764321                  12356789999999999999999998874

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.53  E-value=0.00065  Score=62.74  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus       107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~  158 (180)
T cd03214         107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL  158 (180)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46889999999999999986 7887778888999988776 77777787764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF05729 NACHT: NACHT domain

Probab=97.52  E-value=0.00056  Score=60.44  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhccc----ceeeechhhhHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQ----KQRVHFNKFMLDVH  107 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~----k~R~Hf~~fm~~v~  107 (438)
                      =++|+|++|+|||++|..+...+....    +..+.|.-++....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDIS   46 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhh
Confidence            378999999999999999998884322    12455544444444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.00033  Score=69.30  Aligned_cols=48  Identities=25%  Similarity=0.265  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      -+|+.++.++++|++||-.. +|+..+..+..|+..+.+.|+.|++.+.
T Consensus       149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH  197 (254)
T COG1121         149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH  197 (254)
T ss_pred             HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            36899999999999999877 7999999999999999999876666553

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.50  E-value=0.00075  Score=60.49  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|......+..++..+   +..++++|+..
T Consensus        80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~  127 (144)
T cd03221          80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR  127 (144)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence            35889999999999999886 6777666677777655   45667777663

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.49  E-value=0.00033  Score=65.51  Aligned_cols=49  Identities=18%  Similarity=0.267  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~  220 (438)
                      .+|+.++.+++++++||-.. +|+.....+..++..+..++ ..+|++|..
T Consensus        81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~  131 (177)
T cd03222          81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD  131 (177)
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46889999999999999986 68887778888888887665 667777765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.49  E-value=0.0009  Score=72.24  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...|.-++||||+|+|||.++.+|+..+.
T Consensus        18 Gq~~v~~~L~~~i~~------------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         18 GQEHVKEVLLAALRQ------------------GRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             ChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            577777777665432                  12345679999999999999999998884

>KOG2028|consensus

Probab=97.49  E-value=0.00028  Score=72.86  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=23.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-..+.||||||+|||.|+.++..+..
T Consensus       161 ~ipSmIlWGppG~GKTtlArlia~tsk  187 (554)
T KOG2028|consen  161 RIPSMILWGPPGTGKTTLARLIASTSK  187 (554)
T ss_pred             CCCceEEecCCCCchHHHHHHHHhhcC
Confidence            345799999999999999999987653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.48  E-value=0.00078  Score=72.76  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|..++..|......                  ...+..++|+||+|+|||+++.+|+..+.
T Consensus        24 iGq~~vv~~L~~ai~~------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         24 QGQEVLVKVLSYTILN------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             cCcHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788888877764321                  23467899999999999999999999884

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.47  E-value=0.00055  Score=63.93  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             HHHHHHhhc--CCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISK--TWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~--~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.+  +++|++||--. +|......+.+++..+.+.|..+|++|...
T Consensus        97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~  149 (176)
T cd03238          97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL  149 (176)
T ss_pred             HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            368889999  99999999987 688878888888888877788888877764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0740|consensus

Probab=97.46  E-value=0.00018  Score=75.78  Aligned_cols=28  Identities=32%  Similarity=0.567  Sum_probs=25.0

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+.++|++|.||+|+|||||..+++..+
T Consensus       183 r~p~rglLLfGPpgtGKtmL~~aiAsE~  210 (428)
T KOG0740|consen  183 REPVRGLLLFGPPGTGKTMLAKAIATES  210 (428)
T ss_pred             ccccchhheecCCCCchHHHHHHHHhhh
Confidence            4567999999999999999999997765

>PRK13695 putative NTPase; Provisional

Probab=97.45  E-value=0.0012  Score=60.67  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=35.6

Q ss_pred             HHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          174 ANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       174 a~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      +...+.++++|++||++..+..+ ..+..++..+.+.|..+|+|+|..
T Consensus        90 ~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~  136 (174)
T PRK13695         90 LERALEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRR  136 (174)
T ss_pred             HHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECch
Confidence            44455689999999998765444 445677777778899999999973

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.42  E-value=0.0016  Score=59.90  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+.+++..+. ++..+|++|+..
T Consensus       108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~  157 (178)
T cd03247         108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL  157 (178)
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence            46899999999999999987 78887788888888874 567777777654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.42  E-value=0.0021  Score=60.04  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..+.
T Consensus       118 ~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             HHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence            46899999999999999987 6888888888899888777878888887753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.42  E-value=0.0019  Score=59.28  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~  156 (173)
T cd03246         106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP  156 (173)
T ss_pred             HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46889999999999999886 788888888889988877787777777764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.42  E-value=0.00095  Score=72.69  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...+..++||||+|+|||.++.+|...+.
T Consensus        20 Gq~~~v~~L~~~i~~------------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         20 GQQHALNSLVHALET------------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            677877776665431                  12356688999999999999999998774

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.41  E-value=0.00039  Score=78.98  Aligned_cols=44  Identities=25%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+.+..                  ...+..++|||+.|+|||.++.+|...+.
T Consensus        19 Gqe~v~~~L~~~i~~------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         19 GQEHVTEPLSTALDS------------------GRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             CcHHHHHHHHHHHHh------------------CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            577777776665431                  13456789999999999999999988884

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.40  E-value=0.0016  Score=71.75  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+....                  ...+..++||||+|+|||.++.+|...+-
T Consensus        20 GQe~v~~~L~~ai~~------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         20 GQETVKAILSRAAQE------------------NRVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CCHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            567777766665431                  12345788999999999999999998884

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.40  E-value=0.00064  Score=70.98  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+..+.                  ...|..+++|||+|+|||.++-+|...+.
T Consensus        20 Gq~~~~~~L~~~~~~------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         20 AQEHITRTIQNSLRM------------------GRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             ChHHHHHHHHHHHHh------------------CCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            577887777665431                  23467899999999999999999988884

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.39  E-value=0.0011  Score=61.08  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~  161 (178)
T cd03229         110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL  161 (178)
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46899999999999999987 7888888899999998876 67777777653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.39  E-value=0.00045  Score=70.07  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH  107 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~  107 (438)
                      ....++|-|+||+|||+|+..+...+. ..-.|+.|+..+.--.
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p~d   84 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLPSD   84 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCHHH
Confidence            356899999999999999999999986 3468999998876553

>KOG0989|consensus

Probab=97.38  E-value=0.00093  Score=67.64  Aligned_cols=53  Identities=25%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .-..+.....|..+++.|-.-..+                   ..-..+++|||||+|||.-+-+|..++..
T Consensus        31 rPkt~de~~gQe~vV~~L~~a~~~-------------------~~lp~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   31 RPKTFDELAGQEHVVQVLKNALLR-------------------RILPHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             CCCcHHhhcchHHHHHHHHHHHhh-------------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            345677788999999887764332                   11235899999999999999999998854

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.38  E-value=0.0019  Score=62.06  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHH-hhhcccceeeechhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYE-SCETKQKQRVHFNKFM  103 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~-~l~~~~k~R~Hf~~fm  103 (438)
                      ..+.+.-++|+|++|+|||+|+..|.. .+.  ...++-|-.+-
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e   62 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTE   62 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcC
Confidence            345667799999999999999999944 443  35566665553

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=97.37  E-value=0.0013  Score=61.42  Aligned_cols=43  Identities=9%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ..++++|+||... .|......+.+++..+...|..+|++|..+
T Consensus       115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~  158 (178)
T cd03239         115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK  158 (178)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5799999999997 687777778888888877777888888774

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=97.37  E-value=0.0016  Score=73.40  Aligned_cols=134  Identities=18%  Similarity=0.210  Sum_probs=80.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      ..+.+++.|++|+..+-.                        ..+=..|.|++|+|||+++.++...+.. ...++++-.
T Consensus       349 ~~~~Ls~~Q~~Av~~i~~------------------------s~~~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~A  403 (744)
T TIGR02768       349 QHYRLSEEQYEAVRHVTG------------------------SGDIAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGAA  403 (744)
T ss_pred             ccCCCCHHHHHHHHHHhc------------------------CCCEEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEe
Confidence            346678888887764311                        0134789999999999999999887753 356777755


Q ss_pred             hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcC
Q psy318          102 FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKT  181 (438)
Q Consensus       102 fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~  181 (438)
                      .-....++|.+.....    +.        ++        +.++           .+..    ...        ..+...
T Consensus       404 pTg~Aa~~L~~~~g~~----a~--------Ti--------~~~~-----------~~~~----~~~--------~~~~~~  440 (744)
T TIGR02768       404 LSGKAAEGLQAESGIE----SR--------TL--------ASLE-----------YAWA----NGR--------DLLSDK  440 (744)
T ss_pred             CcHHHHHHHHhccCCc----ee--------eH--------HHHH-----------hhhc----cCc--------ccCCCC
Confidence            5444444443211100    00        00        0000           0000    000        113578


Q ss_pred             CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcC
Q psy318          182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKN  228 (438)
Q Consensus       182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~  228 (438)
                      +||++||+..++...   +..|+......|..||+-+.  |.+|.+-
T Consensus       441 ~llIvDEasMv~~~~---~~~Ll~~~~~~~~kliLVGD--~~QLpsV  482 (744)
T TIGR02768       441 DVLVIDEAGMVGSRQ---MARVLKEAEEAGAKVVLVGD--PEQLQPI  482 (744)
T ss_pred             cEEEEECcccCCHHH---HHHHHHHHHhcCCEEEEECC--hHHcccc
Confidence            999999999998543   45677766678888888885  4666653

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.37  E-value=0.0017  Score=60.10  Aligned_cols=50  Identities=22%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus       114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  164 (182)
T cd03215         114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL  164 (182)
T ss_pred             HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999887 688888888899998877777788887763

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.35  E-value=0.00068  Score=72.16  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...|..++||||+|+|||.++.+|...+.
T Consensus        21 Gq~~~v~~L~~~i~~------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         21 GQDAVVAVLKNALRF------------------NRAAHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            577777766654421                  13456788999999999999999998873

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.35  E-value=0.0013  Score=72.84  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .|..++..|.+.+..                  ...+..++|||++|+|||.++.+|...+..
T Consensus        20 GQe~vv~~L~~~l~~------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         20 GQEHVLTALANALDL------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            688888877665432                  123566789999999999999999888853

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.35  E-value=0.0012  Score=71.59  Aligned_cols=47  Identities=13%  Similarity=0.056  Sum_probs=31.1

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ....|++|||.+......+..|...++.- ...+.+|+++|.+ ..+.+
T Consensus       116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd~-~kL~~  162 (535)
T PRK08451        116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATTDP-LKLPA  162 (535)
T ss_pred             CCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEECCh-hhCch
Confidence            35789999999998866555565555554 2345667777664 45443

>KOG0741|consensus

Probab=97.34  E-value=0.00055  Score=73.51  Aligned_cols=28  Identities=32%  Similarity=0.567  Sum_probs=25.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-.||++||||||||||.++.-+..-|.
T Consensus       254 ~HVKGiLLyGPPGTGKTLiARqIGkMLN  281 (744)
T KOG0741|consen  254 KHVKGILLYGPPGTGKTLIARQIGKMLN  281 (744)
T ss_pred             cceeeEEEECCCCCChhHHHHHHHHHhc
Confidence            4569999999999999999999988774

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.33  E-value=0.0027  Score=59.49  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      .+|+.++.++++|++||--. +|......+..++..+..+|..+|++|..++
T Consensus       121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            46899999999999999987 6888778888999988777888888887754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.32  E-value=0.0011  Score=75.68  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhhcc
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKLFS  393 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~Lf~  393 (438)
                      ..|..|++++|-.   .+.+...-|..++|.-|          =.++-+|+++....+.+..
T Consensus       667 ~p~svvllDEiek---a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~  725 (852)
T TIGR03345       667 KPYSVVLLDEVEK---AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA  725 (852)
T ss_pred             CCCcEEEEechhh---cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence            5688999999965   46677778889999876          2578889999988876654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.32  E-value=0.0023  Score=67.70  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ...++.+.||+|+|||||..++...
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~  232 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPY  232 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHH
Confidence            3478999999999999999998665

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.32  E-value=0.0013  Score=68.01  Aligned_cols=59  Identities=14%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....|++|||++..+...+..|..+++.--. +..+|+.|+. |..|             +..|+.+|..+.+.
T Consensus       140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~-~~~fiLit~~-~~~l-------------lptIrSRc~~i~l~  198 (351)
T PRK09112        140 GNWRIVIIDPADDMNRNAANAILKTLEEPPA-RALFILISHS-SGRL-------------LPTIRSRCQPISLK  198 (351)
T ss_pred             CCceEEEEEchhhcCHHHHHHHHHHHhcCCC-CceEEEEECC-hhhc-------------cHHHHhhccEEEec
Confidence            3578999999999988777767666665333 3444455544 3333             23567888888876

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.31  E-value=0.0013  Score=71.39  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...+..++||||+|+|||+++.+|...+.
T Consensus        20 Gq~~v~~~L~~~i~~------------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         20 GQEHVVRALTNALEQ------------------QRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            677777777665431                  13456788999999999999999988874

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00065  Score=70.55  Aligned_cols=115  Identities=25%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhccccee-eec-----hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCC-cccc
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQR-VHF-----NKFMLDVHAKIHEVKKILARDKAKSYDPGVPN-RLDV  135 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R-~Hf-----~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~  135 (438)
                      ..|..+||||++|||||.++.-+...+....... +.|     +.-+..+...+...-.+            +|. ++..
T Consensus        40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~------------~p~~g~~~  107 (366)
T COG1474          40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK------------VPLTGDSS  107 (366)
T ss_pred             CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC------------CCCCCCch
Confidence            3455699999999999999999999885443333 222     12233333333332111            111 1111


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHH---hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC-
Q psy318          136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDI---ISKTWLICFDEFQVTDIADAMILKRLFTELFQLG-  211 (438)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~---~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g-  211 (438)
                      +                                .+.....+.   ....-++++||++.+...+...|+.|+..-.... 
T Consensus       108 ~--------------------------------~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~  155 (366)
T COG1474         108 L--------------------------------EILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKV  155 (366)
T ss_pred             H--------------------------------HHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccce
Confidence            1                                011111111   2357899999999975554477888877654432 


Q ss_pred             -CEEEEecCCC
Q psy318          212 -VVVVATSNRA  221 (438)
Q Consensus       212 -~~lV~TSN~~  221 (438)
                       +.+|+.+|-.
T Consensus       156 ~v~vi~i~n~~  166 (366)
T COG1474         156 KVSIIAVSNDD  166 (366)
T ss_pred             eEEEEEEeccH
Confidence             3577888875

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.30  E-value=0.00019  Score=56.27  Aligned_cols=35  Identities=34%  Similarity=0.556  Sum_probs=28.0

Q ss_pred             CCc--eEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           65 PKG--LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        65 pkG--lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      +.|  .+|+|+.|+|||.||||+.-.+-.. . |.+|+.
T Consensus        21 ~~g~~tli~G~nGsGKSTllDAi~~~L~~~-~-~~~fN~   57 (62)
T PF13555_consen   21 PRGDVTLITGPNGSGKSTLLDAIQTVLYGN-T-RRRFNA   57 (62)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHcCC-c-hhhhhh
Confidence            345  9999999999999999998777433 2 777765

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.30  E-value=0.001  Score=73.36  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+.+..                  ...+..++|||+.|+|||+++.+|..++.
T Consensus        20 GQe~vv~~L~~~l~~------------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         20 GQEHVVQALTNALTQ------------------QRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            578888877776542                  13456789999999999999999988774

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.0017  Score=69.94  Aligned_cols=43  Identities=30%  Similarity=0.409  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .|..++..|.+.+.                  ....|+.++|+||+|+|||.++.++..++
T Consensus        17 GQe~vv~~L~~a~~------------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964         17 GQDVLVRILRNAFT------------------LNKIPQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             CcHHHHHHHHHHHH------------------cCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence            57777776665432                  12446889999999999999999998876

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.29  E-value=0.0012  Score=62.88  Aligned_cols=134  Identities=16%  Similarity=0.073  Sum_probs=72.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCC-CccccchHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVP-NRLDVMKEEEEK  142 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  142 (438)
                      --|.+||++|.|||+++-...-.+. .+..||.+-+||.--  ......++.-.   .-.-...+.+ .|..  .+.. .
T Consensus        23 g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~~--~~~~-e   95 (191)
T PRK05986         23 GLLIVHTGNGKGKSTAAFGMALRAV-GHGKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWET--QDRE-R   95 (191)
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCcccC--CCcH-H
Confidence            3589999999999999877765553 457899999999754  11222222100   0000001111 1111  0000 0


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEe
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVAT  217 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~T  217 (438)
                      .....++.                    ...|++.+  .++++|+|||+-..   ..-+...+..+++. ...+.-||+|
T Consensus        96 ~~~~~~~~--------------------~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlT  154 (191)
T PRK05986         96 DIAAAREG--------------------WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVIT  154 (191)
T ss_pred             HHHHHHHH--------------------HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEE
Confidence            00011111                    11244443  56899999999862   11222234445543 2345689999


Q ss_pred             cCCChhhhhc
Q psy318          218 SNRAPDDLYK  227 (438)
Q Consensus       218 SN~~P~~L~~  227 (438)
                      +..+|.+|-.
T Consensus       155 GR~~p~~Lie  164 (191)
T PRK05986        155 GRGAPRELIE  164 (191)
T ss_pred             CCCCCHHHHH
Confidence            9999998875

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.00099  Score=73.10  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...+..++||||+|+|||.++.+|...+.
T Consensus        17 Gq~~i~~~L~~~i~~------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         17 GQEHVTEPLSSALDA------------------GRINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            577777766665421                  13455678999999999999999998874

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.28  E-value=0.0026  Score=60.35  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=31.5

Q ss_pred             cCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ++++|++||... +|+.+.. ++..+++.+.+.|..+|++|...
T Consensus       105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~  148 (199)
T cd03283         105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL  148 (199)
T ss_pred             CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence            789999999976 6766554 34557888877787777777763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.28  E-value=0.00094  Score=62.55  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=69.7

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCC-CccccchHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVP-NRLDVMKEEEEKER  144 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  144 (438)
                      +.+|+++|.|||+++-...-.+. .+..|+.+-+||.--  ......+..-.-.-    ...+-+ .|..   .+.+...
T Consensus         8 i~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~----~~~g~g~~~~~---~~~~~~~   79 (173)
T TIGR00708         8 IIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPHGVEF----QVMGTGFTWET---QNREADT   79 (173)
T ss_pred             EEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhcCcEE----EECCCCCeecC---CCcHHHH
Confidence            78999999999999877765553 457899998888753  11111111100000    000110 1111   0000000


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      ...++.+                    ..|++.+  .++|+|++||+-..   ..-+...+..+++.. ..+.-||+|+-
T Consensus        80 ~~~~~~~--------------------~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR  138 (173)
T TIGR00708        80 AIAKAAW--------------------QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGR  138 (173)
T ss_pred             HHHHHHH--------------------HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECC
Confidence            0111111                    1144433  56899999999852   111122344566543 34568999999


Q ss_pred             CChhhhhc
Q psy318          220 RAPDDLYK  227 (438)
Q Consensus       220 ~~P~~L~~  227 (438)
                      .+|..|-.
T Consensus       139 ~~p~~l~e  146 (173)
T TIGR00708       139 GCPQDLLE  146 (173)
T ss_pred             CCCHHHHH
Confidence            99998875

Alternate name: corrinoid adenosyltransferase.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.27  E-value=0.0011  Score=72.72  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...+..++|||++|+|||.++.+|...+.
T Consensus        20 Gq~~~~~~L~~~i~~------------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         20 GQEHVVQTLRNAIAE------------------GRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CCHHHHHHHHHHHHh------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            577777766655431                  12345678999999999999999998874

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.27  E-value=0.0027  Score=61.52  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             hcCCeEEEecCCCC-----ChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQVT-----DIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-----d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+++++++||+...     |+.....+.+++..+.+.|..+++|++..
T Consensus       116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~  163 (230)
T PRK08533        116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK  163 (230)
T ss_pred             cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence            36899999999862     33333456778887878888888898854

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.26  E-value=0.0014  Score=71.87  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...+..++||||+|+|||.++.+|...+.
T Consensus        20 Gq~~v~~~L~~~i~~------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965         20 GQEHVSRTLQNAIDT------------------GRVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            577777666654321                  13456788999999999999999998874

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.25  E-value=0.0016  Score=60.39  Aligned_cols=113  Identities=12%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      ++|.|++|+|||.++..+...+.   +..+|..+   +-.++.+++..++..++            ..|...        
T Consensus         4 ili~G~~~sGKS~~a~~l~~~~~---~~~~~iat~~~~~~e~~~ri~~h~~~R~------------~~w~t~--------   60 (170)
T PRK05800          4 ILVTGGARSGKSRFAERLAAQSG---LQVLYIATAQPFDDEMAARIAHHRQRRP------------AHWQTV--------   60 (170)
T ss_pred             EEEECCCCccHHHHHHHHHHHcC---CCcEeCcCCCCChHHHHHHHHHHHhcCC------------CCCeEe--------
Confidence            79999999999999998876642   22233333   23345555544433321            111100        


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-------Ch-h-hHHHHHHHHHHHHHCCCEEE
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-------DI-A-DAMILKRLFTELFQLGVVVV  215 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-------d~-~-da~iL~~Lfn~l~~~g~~lV  215 (438)
                                          ...-.+..+......+..++++|-+...       +. . ....+..+++.+.+.+..+|
T Consensus        61 --------------------E~~~~l~~~i~~~~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvV  120 (170)
T PRK05800         61 --------------------EEPLDLAELLRADAAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKII  120 (170)
T ss_pred             --------------------cccccHHHHHHhhcCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEE
Confidence                                0000122333333445778999977653       11 1 12346678888888888899


Q ss_pred             EecCCChh
Q psy318          216 ATSNRAPD  223 (438)
Q Consensus       216 ~TSN~~P~  223 (438)
                      ++||-.-.
T Consensus       121 lVs~Evg~  128 (170)
T PRK05800        121 LVTNEVGM  128 (170)
T ss_pred             EEEcCCcc
Confidence            99997533

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.24  E-value=0.0032  Score=57.67  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+.+++..+. .+..+|++|+..
T Consensus       106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~  155 (171)
T cd03228         106 AIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRL  155 (171)
T ss_pred             HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence            36888999999999999886 78887778888888885 467778887764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.23  E-value=0.0023  Score=61.33  Aligned_cols=48  Identities=27%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             HHHHhhcCCeEEEecCCC-CChhh-HHHHHHHHHHHHHCC---CEEEEecCCC
Q psy318          174 ANDIISKTWLICFDEFQV-TDIAD-AMILKRLFTELFQLG---VVVVATSNRA  221 (438)
Q Consensus       174 a~~~~~~~~lLc~DEf~v-~d~~d-a~iL~~Lfn~l~~~g---~~lV~TSN~~  221 (438)
                      +...+.+..+++|||+.. +|+.+ ..++..++..+.+.|   ..+|+||...
T Consensus       102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~  154 (213)
T cd03281         102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH  154 (213)
T ss_pred             HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence            444557889999999997 56655 344556888887653   3566677663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.23  E-value=0.0015  Score=74.32  Aligned_cols=47  Identities=9%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHh----------hhCCCeEEEEeCCChhhh
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDAL----------YDNNIRLVISSDVPLNKL  391 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~l----------Yd~~vkL~~~a~~~~~~L  391 (438)
                      .-|.+|++++|-.+   +.+...-|..++|.=          +=.++-+|+++...-+.+
T Consensus       610 ~p~~VvllDeieka---~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i  666 (821)
T CHL00095        610 KPYTVVLFDEIEKA---HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI  666 (821)
T ss_pred             CCCeEEEECChhhC---CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHH
Confidence            45789999999865   566777777788862          235788888888765533

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.23  E-value=0.0015  Score=73.07  Aligned_cols=44  Identities=32%  Similarity=0.441  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...+..+++|||+|+|||.++.+|..++.
T Consensus        22 GQe~~v~~L~~aI~~------------------~rl~HAYLF~GP~GtGKTt~AriLAk~Ln   65 (725)
T PRK07133         22 GQDHIVQTLKNIIKS------------------NKISHAYLFSGPRGTGKTSVAKIFANALN   65 (725)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            577777776665431                  13356678999999999999999998874

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.20  E-value=0.00081  Score=70.88  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=23.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...+++|+||+|||||+|+.++...+.
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~  133 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILD  133 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence            347899999999999999999987764

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=97.20  E-value=0.0013  Score=61.08  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.++||||.|+|||.||..+.+.+.
T Consensus        20 ~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen   20 SQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            46799999999999999999998884

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.19  E-value=0.0038  Score=60.64  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                      ++|+.++-++++++|||.-. +|+.---.+..++..|.+.|..+|+.+
T Consensus       146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVT  193 (240)
T COG1126         146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVT  193 (240)
T ss_pred             HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            47899999999999999987 788776678888999999997655544

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.19  E-value=0.0048  Score=58.29  Aligned_cols=50  Identities=16%  Similarity=0.302  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|...
T Consensus       146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~  196 (218)
T cd03266         146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM  196 (218)
T ss_pred             HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46888999999999999987 788888889999998877787777777764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.16  E-value=0.0076  Score=56.93  Aligned_cols=50  Identities=26%  Similarity=0.272  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus       148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~  198 (216)
T TIGR00960       148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI  198 (216)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46888999999999999987 788888888889988877777777777663

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.16  E-value=0.0023  Score=70.73  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .|..++..|.+...                  ....+..+++|||+|+|||.++-+|...+..
T Consensus        20 GQe~i~~~L~~~i~------------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954         20 AQEHITHTIQNSLR------------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             CcHHHHHHHHHHHH------------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57777777666432                  1244677999999999999999999988843

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.15  E-value=0.0016  Score=61.27  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|+.+
T Consensus       114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~  164 (200)
T cd03217         114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ  164 (200)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            46899999999999999886 688777788888988877787788888764

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.14  E-value=0.0046  Score=51.65  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=25.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF   99 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf   99 (438)
                      ++++|+|++|+|||+++-.+...+... ...++.+
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv   35 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLV   35 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEE
Confidence            478999999999999988887766432 2345544

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.13  E-value=0.003  Score=63.07  Aligned_cols=25  Identities=20%  Similarity=0.105  Sum_probs=23.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +++.|.|++|+|||+|+.++...++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            6899999999999999999988875

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.12  E-value=0.0029  Score=69.59  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++.+++|||+|+|||.++.+|...+.
T Consensus        36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3457899999999999999999998874

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=97.12  E-value=0.0089  Score=53.19  Aligned_cols=46  Identities=20%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             cCCeEEEecCCCCCh-hhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          180 KTWLICFDEFQVTDI-ADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~-~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      ..++|++||+|.... .....+..++..+ ..+..+|+.|..|+....
T Consensus       129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~saT~~~~~~  175 (201)
T smart00487      129 NVDLVILDEAHRLLDGGFGDQLEKLLKLL-PKNVQLLLLSATPPEEIE  175 (201)
T ss_pred             HCCEEEEECHHHHhcCCcHHHHHHHHHhC-CccceEEEEecCCchhHH
Confidence            467999999998764 3334444555544 345566666666654443

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=97.12  E-value=0.0077  Score=69.80  Aligned_cols=135  Identities=13%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ...++.+++.|++|+..+-.                        ..+=++|.|++|+|||++|.++...+.. ...+|..
T Consensus       341 ~~~g~~Ls~eQr~Av~~il~------------------------s~~v~vv~G~AGTGKTT~l~~~~~~~e~-~G~~V~~  395 (988)
T PRK13889        341 EARGLVLSGEQADALAHVTD------------------------GRDLGVVVGYAGTGKSAMLGVAREAWEA-AGYEVRG  395 (988)
T ss_pred             HhcCCCCCHHHHHHHHHHhc------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence            34557788888887764310                        0123579999999999999988776643 2455665


Q ss_pred             hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh
Q psy318          100 NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIIS  179 (438)
Q Consensus       100 ~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~  179 (438)
                      -......-+.|.+..+             +..        ....++          -.++..   +         ...+.
T Consensus       396 ~ApTGkAA~~L~e~tG-------------i~a--------~TI~sl----------l~~~~~---~---------~~~l~  432 (988)
T PRK13889        396 AALSGIAAENLEGGSG-------------IAS--------RTIASL----------EHGWGQ---G---------RDLLT  432 (988)
T ss_pred             ecCcHHHHHHHhhccC-------------cch--------hhHHHH----------Hhhhcc---c---------ccccc
Confidence            4443333333322100             000        000000          000000   0         11235


Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ..+||++||..+++..   .+..|+......|..||+-+..  .+|.+
T Consensus       433 ~~~vlIVDEASMv~~~---~m~~LL~~a~~~garvVLVGD~--~QLps  475 (988)
T PRK13889        433 SRDVLVIDEAGMVGTR---QLERVLSHAADAGAKVVLVGDP--QQLQA  475 (988)
T ss_pred             cCcEEEEECcccCCHH---HHHHHHHhhhhCCCEEEEECCH--HHcCC
Confidence            7899999999999754   3456777666788888888763  44444

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.12  E-value=0.0065  Score=60.36  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN  219 (438)
                      -+|+.+++++++|++||--. +|+..+..+..++..+. ++|..+|++..
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH  197 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH  197 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            47899999999999999987 79999999999999998 55776766653

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.12  E-value=0.0027  Score=70.28  Aligned_cols=49  Identities=29%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +..=..|..++..|...+..                  ...+..++|||++|+|||.++.+|...+-
T Consensus        15 f~~liGq~~i~~~L~~~l~~------------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~   63 (620)
T PRK14948         15 FDELVGQEAIATTLKNALIS------------------NRIAPAYLFTGPRGTGKTSSARILAKSLN   63 (620)
T ss_pred             HhhccChHHHHHHHHHHHHc------------------CCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence            33344688888887776542                  12345799999999999999999998884

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.11  E-value=0.005  Score=69.26  Aligned_cols=166  Identities=17%  Similarity=0.081  Sum_probs=88.5

Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhccc-ceeee
Q psy318           20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQ-KQRVH   98 (438)
Q Consensus        20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~-k~R~H   98 (438)
                      ....+.+++.|++|+..+..                         .+-+.|.|++|||||+++.++...+.... ..++.
T Consensus       318 ~~~~~~l~~~Q~~Ai~~~~~-------------------------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~  372 (720)
T TIGR01448       318 KKLRKGLSEEQKQALDTAIQ-------------------------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVG  372 (720)
T ss_pred             HhcCCCCCHHHHHHHHHHHh-------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEE
Confidence            34567888899888775411                         12488999999999999999988775332 14455


Q ss_pred             chhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh
Q psy318           99 FNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDII  178 (438)
Q Consensus        99 f~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~  178 (438)
                      ....-...-++|.+..+..   ..+                 -+..+.               .   ..+....--.+-.
T Consensus       373 l~ApTg~AA~~L~e~~g~~---a~T-----------------ih~lL~---------------~---~~~~~~~~~~~~~  414 (720)
T TIGR01448       373 LAAPTGRAAKRLGEVTGLT---AST-----------------IHRLLG---------------Y---GPDTFRHNHLEDP  414 (720)
T ss_pred             EEeCchHHHHHHHHhcCCc---ccc-----------------HHHHhh---------------c---cCCccchhhhhcc
Confidence            4333333333333221100   000                 000000               0   0000000000112


Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhh-ccccccccccch
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTY-CDVASLNSNIDY  257 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~-~~vv~ld~g~Dy  257 (438)
                      ...++|++||...+|...   +.+|+..+ ..|..+|+-++  |.+|.+-+-.    .+|-+++... ..++.|.  .-|
T Consensus       415 ~~~~llIvDEaSMvd~~~---~~~Ll~~~-~~~~rlilvGD--~~QLpsV~~G----~v~~dl~~~~~~~~~~L~--~i~  482 (720)
T TIGR01448       415 IDCDLLIVDESSMMDTWL---ALSLLAAL-PDHARLLLVGD--TDQLPSVGPG----QVLKDLILSQAIPVTRLT--KVY  482 (720)
T ss_pred             ccCCEEEEeccccCCHHH---HHHHHHhC-CCCCEEEEECc--cccccCCCCC----chHHHHHhcCCCCEEEeC--eee
Confidence            368999999999998543   45555544 46778888886  4666664322    1233444433 3455565  346


Q ss_pred             hcc
Q psy318          258 RSL  260 (438)
Q Consensus       258 R~~  260 (438)
                      |..
T Consensus       483 RQ~  485 (720)
T TIGR01448       483 RQA  485 (720)
T ss_pred             ccC
Confidence            654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=97.10  E-value=0.0025  Score=69.03  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=37.8

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHH--HH--------CCCEEEEecCCChhhhhcCCCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTEL--FQ--------LGVVVVATSNRAPDDLYKNGLQ  231 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l--~~--------~g~~lV~TSN~~P~~L~~~gl~  231 (438)
                      +-..|+|||++.+....+..|.++++.-  ..        ..+.+|+||+.++.++-..|..
T Consensus       298 ~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f  359 (520)
T PRK10820        298 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEF  359 (520)
T ss_pred             CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence            3578999999999888777777777652  11        1247999999999887654433

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.09  E-value=0.0057  Score=57.59  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=32.9

Q ss_pred             hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCC
Q psy318          178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +.+++++++||... +|+.....+ ..++..+.+.|..+|++|..
T Consensus       106 ~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~  150 (200)
T cd03280         106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY  150 (200)
T ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence            46899999999997 676654444 45788887778888888875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.08  E-value=0.0031  Score=68.21  Aligned_cols=45  Identities=22%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .|..++..|...+..                  ...|..+++|||+|+|||.++.+|...+..
T Consensus        20 Gq~~v~~~L~~~~~~------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         20 GQAPVVRALSNALDQ------------------QYLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             CCHHHHHHHHHHHHh------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            577777777765532                  134567899999999999999999998853

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.07  E-value=0.011  Score=55.70  Aligned_cols=50  Identities=22%  Similarity=0.299  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||-.. +|+.....+.+++..+..+|..+|++|...
T Consensus       138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~  188 (210)
T cd03269         138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM  188 (210)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            46888999999999999987 788888888899998877787788888764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.07  E-value=0.0086  Score=58.42  Aligned_cols=49  Identities=22%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++.+|+.||--- +|...+..+..+|..+... |..+|+.+.-
T Consensus       152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd  202 (226)
T COG1136         152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD  202 (226)
T ss_pred             HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            47899999999999999764 7888888899999999755 7666555544

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=97.06  E-value=0.0021  Score=65.61  Aligned_cols=50  Identities=20%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.++...+..|.++++.-.          ...+.+|+|||..+.++-..|
T Consensus        93 ~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g  152 (329)
T TIGR02974        93 DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEG  152 (329)
T ss_pred             CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcC
Confidence            45789999999999887777777665421          123579999999886665543

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=97.06  E-value=0.0027  Score=70.77  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      .--.|+||||+......+..|.+++..-.          ..++.+|+|||.++.++-..+
T Consensus       470 ~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~  529 (686)
T PRK15429        470 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR  529 (686)
T ss_pred             CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence            34789999999999887777777775421          123579999999987765443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.06  E-value=0.0035  Score=59.00  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             HHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCC
Q psy318          176 DIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       176 ~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      ..+.+.+++++||... +|+.+.. ++..++..+.+.+..+|++|..
T Consensus       104 ~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~  150 (202)
T cd03243         104 SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF  150 (202)
T ss_pred             HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence            3346899999999987 6776554 4456778787778888888876

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0742|consensus

Probab=97.06  E-value=0.0015  Score=68.41  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +++++|||||+||||.+.-+..
T Consensus       385 RNilfyGPPGTGKTm~ArelAr  406 (630)
T KOG0742|consen  385 RNILFYGPPGTGKTMFARELAR  406 (630)
T ss_pred             hheeeeCCCCCCchHHHHHHHh
Confidence            7899999999999998877643

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.06  E-value=0.0041  Score=68.53  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...+..++|||++|+|||.++.++...+.
T Consensus        28 Gq~~~v~~L~~~~~~------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         28 GQEAMVRTLTNAFET------------------GRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            588888777775432                  24567899999999999999999998874

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.06  E-value=0.0041  Score=68.10  Aligned_cols=44  Identities=25%  Similarity=0.247  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...+..++||||+|+|||.++.+|..++.
T Consensus        20 Gqe~iv~~L~~~i~~------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~   63 (563)
T PRK06647         20 GQDFVVETLKHSIES------------------NKIANAYIFSGPRGVGKTSSARAFARCLN   63 (563)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            577777776665431                  12356688999999999999999999884

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.05  E-value=0.0036  Score=67.31  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|..++..|......                  ...+..++||||+|+|||.++.++...+.
T Consensus        19 iGq~~i~~~L~~~i~~------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         19 IGQEIVVRILKNAVKL------------------QRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             cChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688888777665421                  12234566899999999999999998874

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.04  E-value=0.0023  Score=70.70  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=23.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.+..+.|+|++|+|||+|+.+++...
T Consensus       173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       173 PFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            456789999999999999999998766

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.03  E-value=0.0066  Score=57.59  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|......+..++..+..+ |..+|++|...
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~  192 (220)
T cd03265         141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM  192 (220)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999887 7888888889999988775 77777776653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.02  E-value=0.0026  Score=67.78  Aligned_cols=28  Identities=21%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...+.++|+|+||+|||+++..++..+.
T Consensus       192 ~~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        192 TIKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            3568999999999999999999998874

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.01  E-value=0.0087  Score=54.52  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      +++++++||+.. +|+.+...+...+..+..+|..+|++|..+
T Consensus        99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~  141 (162)
T cd03227          99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP  141 (162)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            679999999987 688877777777777766677788887764

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.01  E-value=0.014  Score=54.74  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|..+
T Consensus       136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~  186 (205)
T cd03226         136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY  186 (205)
T ss_pred             HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46888999999999999887 788888888899998877787777777764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.00  E-value=0.0076  Score=58.74  Aligned_cols=50  Identities=18%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|..+
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~  212 (257)
T PRK10619        162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM  212 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46889999999999999887 788888889999999877788777777763

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.99  E-value=0.0032  Score=57.65  Aligned_cols=47  Identities=26%  Similarity=0.373  Sum_probs=36.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+   +..+|++|+..
T Consensus       101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~  148 (166)
T cd03223         101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP  148 (166)
T ss_pred             HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence            46889999999999999987 6877777777777765   56677777664

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.98  E-value=0.0039  Score=64.44  Aligned_cols=48  Identities=17%  Similarity=0.416  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ++++.|++++...-+.   +..                ..|..+||.|+.|+|||+|+.++.+.+..
T Consensus         1 ~Ln~eQ~~~~~~v~~~---~~~----------------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen    1 KLNEEQRRVFDTVIEA---IEN----------------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             CCCHHHHHHHHHHHHH---HHc----------------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            3578899887765432   221                23567999999999999999999888743

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.98  E-value=0.0085  Score=56.02  Aligned_cols=50  Identities=22%  Similarity=0.191  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~  194 (206)
T TIGR03608       144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP  194 (206)
T ss_pred             HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999987 688888889999988877777788887774

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.97  E-value=0.015  Score=55.29  Aligned_cols=50  Identities=20%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+...|..+|++|+.+
T Consensus       134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~  184 (223)
T TIGR03740       134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL  184 (223)
T ss_pred             HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46888999999999999887 688888888999998877787888888763

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PTZ00293 thymidine kinase; Provisional

Probab=96.97  E-value=0.0016  Score=62.88  Aligned_cols=62  Identities=23%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ..+++|.+||.|..+  +   +..+.+.+.+.|+.||+++=.      . -+.++.|.+...+|.-.=.|..+.
T Consensus        76 ~~~dvI~IDEaQFf~--~---i~~~~~~l~~~g~~VivaGLd------~-Df~~~~F~~~~~Ll~~AD~V~kl~  137 (211)
T PTZ00293         76 KNYDVIAIDEGQFFP--D---LVEFSEAAANLGKIVIVAALD------G-TFQRKPFGQILNLIPLAERVTKLT  137 (211)
T ss_pred             cCCCEEEEEchHhhH--h---HHHHHHHHHHCCCeEEEEecC------c-ccccCcCccHHHHHHhhCEEEEcc
Confidence            678999999999984  2   667788888899988877533      2 255667777666444443444454

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.97  E-value=0.0024  Score=61.98  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      ..|.-++|||++|+|||+++..+.
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcC
Confidence            345669999999999999998874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.95  E-value=0.01  Score=55.74  Aligned_cols=49  Identities=20%  Similarity=0.214  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||-.. +|......+..++..+.+.|..+|++|..
T Consensus       139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  188 (204)
T PRK13538        139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ  188 (204)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            46888999999999999986 68888888889998887777777777776

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.94  E-value=0.0085  Score=60.70  Aligned_cols=56  Identities=20%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           19 LSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        19 v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+..+..-|.=.++++.|..|++    + |+           ..-+.+++|+|++|.||||++.-|...-+
T Consensus        31 i~~~rWIgY~~A~~~L~~L~~Ll~----~-P~-----------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp   86 (302)
T PF05621_consen   31 IRADRWIGYPRAKEALDRLEELLE----Y-PK-----------RHRMPNLLIVGDSNNGKTMIIERFRRLHP   86 (302)
T ss_pred             HhcCCeecCHHHHHHHHHHHHHHh----C-Cc-----------ccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence            344444444444556666666543    2 21           23357899999999999999999986553

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=96.94  E-value=0.0025  Score=69.68  Aligned_cols=44  Identities=32%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|...+..                  ...++.+++|||+|+|||.++.+|..++.
T Consensus        20 Gq~~v~~~L~~~i~~------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~   63 (559)
T PRK05563         20 GQEHITKTLKNAIKQ------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN   63 (559)
T ss_pred             CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            567766666654331                  12356678899999999999999988874

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.93  E-value=0.0028  Score=66.93  Aligned_cols=26  Identities=23%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +..++|+||+|+|||+|+.++...+.
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~  141 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILN  141 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcC
Confidence            46899999999999999999987664

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.93  E-value=0.016  Score=54.42  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=42.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~  196 (214)
T cd03292         146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK  196 (214)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 788888889999998877787788887764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=96.92  E-value=0.0047  Score=63.02  Aligned_cols=44  Identities=25%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|......                  ...|..++||||+|+|||.++..|...+-
T Consensus        10 ~q~~~~~~L~~~~~~------------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~   53 (329)
T PRK08058         10 LQPVVVKMLQNSIAK------------------NRLSHAYLFEGAKGTGKKATALWLAKSLF   53 (329)
T ss_pred             hHHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence            377777777665431                  23567889999999999999999988873

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.91  E-value=0.0039  Score=70.71  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=27.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      +..++|+||+|+|||+++..+...+..+ -.|+.+..
T Consensus       349 g~~i~l~GppG~GKTtl~~~ia~~l~~~-~~~i~~~~  384 (784)
T PRK10787        349 GPILCLVGPPGVGKTSLGQSIAKATGRK-YVRMALGG  384 (784)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            3569999999999999999999877532 34555433

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.90  E-value=0.016  Score=54.35  Aligned_cols=50  Identities=22%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus       136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~  186 (208)
T cd03268         136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL  186 (208)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46888999999999999987 688777788888888877777788887664

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.90  E-value=0.019  Score=55.15  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||-.. +|+.....+..++..+... |..+|++|..
T Consensus       155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~  205 (243)
T TIGR02315       155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ  205 (243)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            47889999999999999986 7888888888999888654 7777777765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.90  E-value=0.0013  Score=71.46  Aligned_cols=66  Identities=24%  Similarity=0.395  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHH-----HHh-hcCCCCCCccccccc-----------cCCCCCceEEEccCCCCHhHHHHH
Q psy318           22 NEIQEDKHQEQIVKQLDNVYV-----SIK-NYAPQSKSMFSFFQD-----------KVKQPKGLYIYGAVGGGKTMLMDI   84 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~-----~l~-~~~~~~~~~~~~~~~-----------~~~~pkGlyL~G~vG~GKT~Lmd~   84 (438)
                      ..+..|-.-.+-+++|.++-+     .|. .|.|..  |-.+.+.           ..+.+..++|||++|||||+++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~--f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~  105 (531)
T TIGR02902        28 NKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKS--FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARL  105 (531)
T ss_pred             CeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCC--HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence            345557777777777777644     121 133321  1001111           224568899999999999999999


Q ss_pred             HHHhh
Q psy318           85 FYESC   89 (438)
Q Consensus        85 f~~~l   89 (438)
                      +++.+
T Consensus       106 i~~~~  110 (531)
T TIGR02902       106 VLEEA  110 (531)
T ss_pred             HHHHh
Confidence            98754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.89  E-value=0.0064  Score=56.67  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             hcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHC-CCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAM-ILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+.+++++||+.. +|+.+.. ++..++..+.+. +..+|++|...
T Consensus        77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~  122 (185)
T smart00534       77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH  122 (185)
T ss_pred             CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence            4789999999997 6776544 345677777764 77777777774

>PRK10536 hypothetical protein; Provisional

Probab=96.89  E-value=0.01  Score=59.07  Aligned_cols=67  Identities=15%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHh--hccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKT--YCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~--~~~vv~ld  252 (438)
                      ..++|++||.|.+++...   ..++ .....+..+|++++..--|+..+  ...-+...+++++.  .+.+|.++
T Consensus       176 ~~~~vIvDEaqn~~~~~~---k~~l-tR~g~~sk~v~~GD~~QiD~p~~--~~sGL~~~~~~~k~~~~~~~i~l~  244 (262)
T PRK10536        176 ENAVVILDEAQNVTAAQM---KMFL-TRLGENVTVIVNGDITQCDLPRG--VKSGLSDALERFEEDEMVGIVRFG  244 (262)
T ss_pred             cCCEEEEechhcCCHHHH---HHHH-hhcCCCCEEEEeCChhhccCCCC--CCCCHHHHHHHhCCCCceEEEEEe
Confidence            458999999999987532   2233 44457789999999866666431  11223456676663  33445554

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.88  E-value=0.022  Score=53.70  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus       142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~  192 (213)
T cd03235         142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL  192 (213)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999887 688877888888988877777777777663

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.88  E-value=0.0031  Score=64.29  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=35.9

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.+....+..|.++++.-.  .        ..+.+|+|||..+.++-..|
T Consensus       100 ~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g  159 (326)
T PRK11608        100 DGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG  159 (326)
T ss_pred             CCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence            35689999999999887777777775421  1        12579999999887665543

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.88  E-value=0.0061  Score=63.29  Aligned_cols=44  Identities=20%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++..|.+.+.+                  ...|..++|+||.|+||+.|+..|...+-
T Consensus        23 Gq~~~~~~L~~~~~~------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll   66 (365)
T PRK07471         23 GHAAAEAALLDAYRS------------------GRLHHAWLIGGPQGIGKATLAYRMARFLL   66 (365)
T ss_pred             ChHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            577887777765542                  24567899999999999999999998883

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.88  E-value=0.0088  Score=55.85  Aligned_cols=50  Identities=20%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. .|+.....+..++....+.|..+|++|+..
T Consensus       133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  183 (195)
T PRK13541        133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE  183 (195)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            46888999999999999986 688777788888876666778888888775

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.86  E-value=0.0065  Score=57.94  Aligned_cols=49  Identities=16%  Similarity=0.222  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus       143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~  192 (232)
T cd03218         143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN  192 (232)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46888999999999999887 78888888999999988778788888875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.86  E-value=0.0057  Score=67.65  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+..+++|||.|+|||.++.+|...+.
T Consensus        37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~   64 (614)
T PRK14971         37 KLAHAYLFCGPRGVGKTTCARIFAKTIN   64 (614)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3466789999999999999999988773

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.85  E-value=0.016  Score=55.49  Aligned_cols=49  Identities=22%  Similarity=0.191  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus       152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~  201 (224)
T cd03220         152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD  201 (224)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46888999999999999987 78887788888888887777777777766

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.85  E-value=0.025  Score=53.67  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~  208 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD  208 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46788999999999999987 68888888999999987778777777776

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.84  E-value=0.0066  Score=65.67  Aligned_cols=50  Identities=24%  Similarity=0.222  Sum_probs=35.8

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH-H---------CCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF-Q---------LGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~---------~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.+....+..|.+++..-. .         ..+.+|+|||..+.++-..|
T Consensus       290 ~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~  349 (534)
T TIGR01817       290 DGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKG  349 (534)
T ss_pred             CCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcC
Confidence            34689999999999887777777665421 1         12579999999987765543

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.82  E-value=0.0013  Score=61.25  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=17.5

Q ss_pred             Cc-eEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KG-LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kG-lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+ .+|+||||||||++.-.+...+
T Consensus        17 ~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   17 NGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCChHHHHHHHHHHh
Confidence            35 8999999999997666555554

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.81  E-value=0.014  Score=54.32  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHEVKKI  116 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~~~~~  116 (438)
                      ++|.|++|+|||.++-.|...    ...++.|    ..+=.++.+++.+++..
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~   50 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKR   50 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHh
Confidence            589999999999999888654    1234444    23444556666555443

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.80  E-value=0.016  Score=55.71  Aligned_cols=50  Identities=18%  Similarity=0.283  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~  201 (242)
T PRK11124        151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV  201 (242)
T ss_pred             HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 688877888899998877777777777663

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.80  E-value=0.0034  Score=59.21  Aligned_cols=54  Identities=15%  Similarity=0.357  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCChhhh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRAPDDL  225 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~P~~L  225 (438)
                      .+|..++.++++|++||--. +|......+.+++..+... +..+|+++...++++
T Consensus       128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~  183 (202)
T cd03233         128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI  183 (202)
T ss_pred             HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence            46899999999999999876 6888778888999988765 555555555444443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.80  E-value=0.0086  Score=57.14  Aligned_cols=50  Identities=14%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  192 (230)
T TIGR03410       141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL  192 (230)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence            46788999999999999987 6888778888999988764 77777777663

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.80  E-value=0.029  Score=53.26  Aligned_cols=50  Identities=14%  Similarity=0.185  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|..+
T Consensus       141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~  192 (220)
T cd03293         141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI  192 (220)
T ss_pred             HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence            46888999999999999887 788888889999988865 477777777764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.80  E-value=0.012  Score=55.37  Aligned_cols=50  Identities=18%  Similarity=0.183  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~  194 (211)
T cd03225         144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL  194 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 788888888899988877787777777763

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.79  E-value=0.012  Score=57.08  Aligned_cols=43  Identities=16%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             hcCCeEEEecCCC-CChhhHHH-HHHHHHHHHHC-CCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMI-LKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~i-L~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+..++++||+.. ++..+... ...+++.+.+. +..+|+++...
T Consensus       109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~  154 (222)
T cd03287         109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP  154 (222)
T ss_pred             CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence            4679999999986 45444443 46788888887 66777777764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.79  E-value=0.02  Score=54.99  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+..++..+..+ |..+|++|...
T Consensus       140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~  191 (232)
T cd03300         140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ  191 (232)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46889999999999999998 6888778888999888764 77788887764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.79  E-value=0.0089  Score=55.71  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=40.5

Q ss_pred             HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccc
Q psy318          177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS  250 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~  250 (438)
                      .+..+|++++||++-..-.... +...++..+..+.++|+|=.+-            .=-|.++.++....++.
T Consensus        97 A~~~aDvIIIDEIGpMElks~~-f~~~ve~vl~~~kpliatlHrr------------sr~P~v~~ik~~~~v~v  157 (179)
T COG1618          97 ALEEADVIIIDEIGPMELKSKK-FREAVEEVLKSGKPLIATLHRR------------SRHPLVQRIKKLGGVYV  157 (179)
T ss_pred             HhhcCCEEEEecccchhhccHH-HHHHHHHHhcCCCcEEEEEecc------------cCChHHHHhhhcCCEEE
Confidence            3456899999999986544322 5667788888888898885532            11366666666544443

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=96.79  E-value=0.0061  Score=55.93  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....+++|||++......+-+|...++.-- .++.+|++++.+ ..             ++.-|+.+|.++.+.
T Consensus       101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~~~-~~-------------il~TI~SRc~~i~~~  159 (162)
T PF13177_consen  101 GKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITNNP-SK-------------ILPTIRSRCQVIRFR  159 (162)
T ss_dssp             SSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES-G-GG-------------S-HHHHTTSEEEEE-
T ss_pred             CCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEECCh-HH-------------ChHHHHhhceEEecC
Confidence            357899999999988776666666666543 345666666553 22             356788999988875

...

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.78  E-value=0.0041  Score=61.60  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....++++||.+......+-+|..+++.- ....++|+++|. |..+.+             -|+.+|.++.+.
T Consensus       108 ~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n~-~~~il~-------------tI~SRc~~i~f~  166 (325)
T COG0470         108 GGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITND-PSKILP-------------TIRSRCQRIRFK  166 (325)
T ss_pred             CCceEEEeCcHHHHhHHHHHHHHHHhccC-CCCeEEEEEcCC-hhhccc-------------hhhhcceeeecC
Confidence            45799999999998765555554444432 234688899994 444443             466677766665

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.78  E-value=0.031  Score=52.67  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+ .|..+|++|...
T Consensus       140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  191 (213)
T cd03259         140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ  191 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence            46888999999999999987 788888888999998876 477777777764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.78  E-value=0.022  Score=55.69  Aligned_cols=49  Identities=8%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.+++++++||--. +|+.....+..++..+... |..+|++|..
T Consensus       125 ~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd  175 (246)
T cd03237         125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD  175 (246)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46889999999999999987 7888888888999888754 6777777765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.78  E-value=0.022  Score=53.90  Aligned_cols=50  Identities=20%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus       151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~  202 (221)
T TIGR02211       151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL  202 (221)
T ss_pred             HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999987 7888888888999888754 77777777764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.77  E-value=0.0038  Score=58.96  Aligned_cols=32  Identities=13%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +.|.||+|+|||.++.++...++...+.++.+
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t   35 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILT   35 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEE
Confidence            67899999999999999988886544555554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=96.77  E-value=0.011  Score=56.79  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             hhcCCeEEEecCCC-CChhhH-HHHHHHHHHHHHC-CCEEEEecCC
Q psy318          178 ISKTWLICFDEFQV-TDIADA-MILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      +.+..+|++||+.. ++.-|. .+...+++.+.+. +..+|++|..
T Consensus       107 ~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~  152 (216)
T cd03284         107 ATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY  152 (216)
T ss_pred             CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence            35789999999965 333332 3345667777776 7778888877

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.75  E-value=0.015  Score=55.10  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus       142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  191 (222)
T cd03224         142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN  191 (222)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46888999999999999987 68888888999999887777778888765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.75  E-value=0.021  Score=53.75  Aligned_cols=50  Identities=20%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..+
T Consensus       147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~  197 (214)
T TIGR02673       147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL  197 (214)
T ss_pred             HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 688888889999998877777777777663

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.75  E-value=0.011  Score=59.69  Aligned_cols=50  Identities=14%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|+||...
T Consensus       148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l  198 (306)
T PRK13537        148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM  198 (306)
T ss_pred             HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            47899999999999999987 799888889999999987888888888874

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=96.75  E-value=0.023  Score=50.58  Aligned_cols=46  Identities=20%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             cCCeEEEecCCCCChhh-HHHHHHHHHHHHHC-CCEEEEecCCChhhh
Q psy318          180 KTWLICFDEFQVTDIAD-AMILKRLFTELFQL-GVVVVATSNRAPDDL  225 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~d-a~iL~~Lfn~l~~~-g~~lV~TSN~~P~~L  225 (438)
                      ..++|+|||+|...... ...+..+++.+... ...+|++|-.++..+
T Consensus       119 ~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~  166 (169)
T PF00270_consen  119 RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNV  166 (169)
T ss_dssp             TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHH
T ss_pred             cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhH
Confidence            38999999999875422 22455666665433 467777777766544

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.74  E-value=0.0096  Score=63.94  Aligned_cols=48  Identities=17%  Similarity=0.191  Sum_probs=35.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|+|||.-. +|...+..+.+.+..+. .+..+|+-|.+
T Consensus       480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr  528 (529)
T TIGR02868       480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH  528 (529)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence            47899999999999999997 68777766666666654 34555555544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.74  E-value=0.005  Score=60.74  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +...++|||+.|||||.|+.++.+....
T Consensus        51 pannvLL~G~rGtGKSSlVkall~~y~~   78 (249)
T PF05673_consen   51 PANNVLLWGARGTGKSSLVKALLNEYAD   78 (249)
T ss_pred             CCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence            4578999999999999999999887753

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.74  E-value=0.023  Score=57.13  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCCChhhhh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNRAPDDLY  226 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~~P~~L~  226 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+...| +.|++||.. ++++.
T Consensus       146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~-l~e~~  201 (293)
T COG1131         146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI-LEEAE  201 (293)
T ss_pred             HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc-HHHHH
Confidence            47889999999999999988 79999999999999999988 456666655 45444

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.74  E-value=0.025  Score=53.11  Aligned_cols=50  Identities=16%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~  195 (213)
T cd03262         145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM  195 (213)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999886 788888889999999887777777777653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.74  E-value=0.01  Score=55.82  Aligned_cols=50  Identities=22%  Similarity=0.167  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..+
T Consensus       135 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~  185 (201)
T cd03231         135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD  185 (201)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence            47889999999999999987 688877788888888777788888888764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.73  E-value=0.031  Score=53.68  Aligned_cols=50  Identities=14%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus       124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  175 (230)
T TIGR01184       124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV  175 (230)
T ss_pred             HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999886 7888888888988888764 77777777763

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.73  E-value=0.0013  Score=67.21  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD  105 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~  105 (438)
                      .+.|+|.|++|+|||.|+..+...+..+ -.|+.++.-+..
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~~~~l~~  103 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNLDSHVSR  103 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEecCCCCh
Confidence            5789999999999999999999998644 568888876544

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.73  E-value=0.0083  Score=62.52  Aligned_cols=40  Identities=18%  Similarity=0.117  Sum_probs=28.8

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .....-++|+|+||+|||+|+-.|...+.. .+.++-|-.+
T Consensus        79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~  118 (372)
T cd01121          79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSG  118 (372)
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence            344456899999999999999998877643 2346665443

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.72  E-value=0.0061  Score=61.40  Aligned_cols=59  Identities=15%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      .+..+++|||.+......+-.|...++.- ..++.+|++++. |+.+             +..|+++|.++.+.
T Consensus        92 ~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~-~~~l-------------l~TI~SRc~~~~~~  150 (313)
T PRK05564         92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCEN-LEQI-------------LDTIKSRCQIYKLN  150 (313)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCC-hHhC-------------cHHHHhhceeeeCC
Confidence            46789999999988765555555555542 235666666643 4533             34578889888886

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.70  E-value=0.018  Score=55.03  Aligned_cols=45  Identities=20%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             HhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318          177 IISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+.+.+++++||+.. +++.+.. +...+++.+.+.|..+|+||...
T Consensus       105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~  151 (204)
T cd03282         105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR  151 (204)
T ss_pred             hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence            456789999999987 5665544 34567888888888888888763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.70  E-value=0.031  Score=52.78  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|...+..+..++..+.+. |..+|++|...
T Consensus       138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~  189 (213)
T TIGR01277       138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL  189 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999987 6888888899999998764 77777777764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.69  E-value=0.012  Score=55.58  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=43.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.++|..+|++|... +++..
T Consensus       137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~  192 (207)
T PRK13539        137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG  192 (207)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc
Confidence            46888999999999999987 687777778889988877788888887774 44443

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.014  Score=55.63  Aligned_cols=50  Identities=22%  Similarity=0.193  Sum_probs=42.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+-++...+|-++||-.. +|...-..|..+|..-...|+.||+||..|
T Consensus       140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~  190 (209)
T COG4133         140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP  190 (209)
T ss_pred             HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence            46788889999999999987 687776778888888888999999998875

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.68  E-value=0.027  Score=54.00  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+. |..+|++|..
T Consensus       154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  204 (241)
T cd03256         154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ  204 (241)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46888999999999999987 7888888889999988754 7777777765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.67  E-value=0.051  Score=52.15  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|...
T Consensus       142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~  193 (236)
T TIGR03864       142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV  193 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence            47889999999999999987 788888888899988874 577777777653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.67  E-value=0.028  Score=52.90  Aligned_cols=50  Identities=14%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus       140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~  191 (213)
T cd03301         140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ  191 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47888999999999999987 7888888899999988764 77788888764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.66  E-value=0.042  Score=52.47  Aligned_cols=49  Identities=14%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~  200 (233)
T cd03258         150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE  200 (233)
T ss_pred             HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46888999999999999886 7888888899999988765 7777777765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.65  E-value=0.036  Score=55.60  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=42.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~  183 (302)
T TIGR01188       134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY  183 (302)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            47889999999999999987 78888888999999988778888888876

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.64  E-value=0.021  Score=54.55  Aligned_cols=49  Identities=20%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~  202 (236)
T cd03219         153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD  202 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            46888999999999999987 68888888999999887777777777775

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.64  E-value=0.049  Score=53.88  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=42.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus       147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~  197 (275)
T PRK13639        147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV  197 (275)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            46888999999999999987 788888889999999887777777777763

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=96.64  E-value=0.025  Score=66.27  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ....+.+++.|.+|+..+..                        ..+=..|.|+.|+|||++|..+...+... +.+|+-
T Consensus       376 ~~~~~~Ls~eQ~~Av~~i~~------------------------~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g  430 (1102)
T PRK13826        376 FARHARLSDEQKTAIEHVAG------------------------PARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVG  430 (1102)
T ss_pred             HhcCCCCCHHHHHHHHHHhc------------------------cCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence            34567889999998875420                        01237899999999999999998877532 445654


Q ss_pred             hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh
Q psy318          100 NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIIS  179 (438)
Q Consensus       100 ~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~  179 (438)
                      -..-...-+.|.+..+..   ..         ++        +.++           .++.    ...++        +.
T Consensus       431 ~ApTgkAA~~L~e~~Gi~---a~---------TI--------as~l-----------l~~~----~~~~~--------l~  467 (1102)
T PRK13826        431 GALAGKAAEGLEKEAGIQ---SR---------TL--------SSWE-----------LRWN----QGRDQ--------LD  467 (1102)
T ss_pred             EcCcHHHHHHHHHhhCCC---ee---------eH--------HHHH-----------hhhc----cCccC--------CC
Confidence            333333333332211100   00         00        0000           0000    00111        34


Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ..+||++||..+++..+   +..|+...-..|..||+-+.  |.+|.+
T Consensus       468 ~~~vlVIDEAsMv~~~~---m~~Ll~~~~~~garvVLVGD--~~QL~~  510 (1102)
T PRK13826        468 NKTVFVLDEAGMVASRQ---MALFVEAVTRAGAKLVLVGD--PEQLQP  510 (1102)
T ss_pred             CCcEEEEECcccCCHHH---HHHHHHHHHhcCCEEEEECC--HHHcCC
Confidence            57899999999997554   34566666667888888885  466665

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.63  E-value=0.031  Score=54.24  Aligned_cols=50  Identities=12%  Similarity=0.150  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||-.. +|+.....+..++..+... |..+|++|...
T Consensus       156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~  207 (252)
T TIGR03005       156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM  207 (252)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            46888999999999999987 7888788888999888764 77777777764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.60  E-value=0.046  Score=52.36  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus       146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~  196 (235)
T cd03261         146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD  196 (235)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence            46888999999999999887 7888888888999888764 7777777765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.60  E-value=0.051  Score=51.31  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.. .|..+|++|...
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  201 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP  201 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            46888999999999999987 788888889999998876 577777777763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.60  E-value=0.01  Score=65.79  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +-++|+||+|+|||.++.++...+
T Consensus       111 ~illL~GP~GsGKTTl~~~la~~l  134 (637)
T TIGR00602       111 RILLITGPSGCGKSTTIKILSKEL  134 (637)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            459999999999999999998766

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=96.60  E-value=0.0071  Score=65.23  Aligned_cols=50  Identities=22%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.+....+..|.+++..-.          ...+.+|+|||..+.++-..|
T Consensus       281 ~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~  340 (509)
T PRK05022        281 DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG  340 (509)
T ss_pred             CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence            45679999999999877776776665321          113579999999987765443

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.60  E-value=0.013  Score=62.36  Aligned_cols=40  Identities=18%  Similarity=0.099  Sum_probs=28.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .+...-++|+|+||+|||+|+-.|...+.. +..++-|-.+
T Consensus        77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~  116 (446)
T PRK11823         77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSG  116 (446)
T ss_pred             ccCCEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEc
Confidence            344556889999999999999999877752 2345555443

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=96.60  E-value=0.026  Score=55.35  Aligned_cols=49  Identities=24%  Similarity=0.253  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~  203 (265)
T PRK10253        153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD  203 (265)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47899999999999999986 7888888899999988764 7777777765

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.59  E-value=0.037  Score=52.86  Aligned_cols=50  Identities=24%  Similarity=0.354  Sum_probs=42.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.++|..+|++|...
T Consensus       123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~  173 (223)
T TIGR03771       123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL  173 (223)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999887 788888889999998877787788887763

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.58  E-value=0.02  Score=56.38  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|...
T Consensus       143 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~  194 (257)
T PRK11247        143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV  194 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47889999999999999987 688877788888888765 467777777663

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.58  E-value=0.04  Score=51.47  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|+.+ .++..
T Consensus       137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~  192 (198)
T TIGR01189       137 ALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD-LGLVE  192 (198)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc-ccccc
Confidence            46888999999999999987 688877788888888877788888888775 44443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.57  E-value=0.045  Score=51.51  Aligned_cols=48  Identities=17%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. +..+|++|..
T Consensus       140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~  188 (211)
T cd03264         140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI  188 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            46888999999999999987 688888888899988865 4667777765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0991|consensus

Probab=96.57  E-value=0.015  Score=57.30  Aligned_cols=102  Identities=21%  Similarity=0.254  Sum_probs=64.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      ...+.|.||||+|||.-..+++..+-.+     .|-+-+++++..          ++.         .+++         
T Consensus        48 mP~liisGpPG~GKTTsi~~LAr~LLG~-----~~ke~vLELNAS----------deR---------GIDv---------   94 (333)
T KOG0991|consen   48 MPNLIISGPPGTGKTTSILCLARELLGD-----SYKEAVLELNAS----------DER---------GIDV---------   94 (333)
T ss_pred             CCceEeeCCCCCchhhHHHHHHHHHhCh-----hhhhHhhhccCc----------ccc---------ccHH---------
Confidence            4579999999999999999998888432     234667777521          000         0111         


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh----hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDII----SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~----~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                                    +|.       .|...|++..    .+..++++||-+....+.+.+|.+..+-. .......+++|.
T Consensus        95 --------------VRn-------~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-S~ttRFalaCN~  152 (333)
T KOG0991|consen   95 --------------VRN-------KIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-SNTTRFALACNQ  152 (333)
T ss_pred             --------------HHH-------HHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-cccchhhhhhcc
Confidence                          011       1222333322    45689999999997666667788877644 455667777886


Q ss_pred             C
Q psy318          221 A  221 (438)
Q Consensus       221 ~  221 (438)
                      .
T Consensus       153 s  153 (333)
T KOG0991|consen  153 S  153 (333)
T ss_pred             h
Confidence            4

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.57  E-value=0.023  Score=53.76  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=35.8

Q ss_pred             HHHHHH----hhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC--C-CEEEEecCCC
Q psy318          172 PVANDI----ISKTWLICFDEFQV-TDIADAMILKRLFTELFQL--G-VVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~----~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~--g-~~lV~TSN~~  221 (438)
                      .+|..+    +.++++|++||... .|......+.+++..+...  + ..++++++..
T Consensus       119 ~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~  176 (198)
T cd03276         119 TVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI  176 (198)
T ss_pred             HHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence            345555    47999999999987 6877777788888877543  3 3566666553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.56  E-value=0.0085  Score=61.46  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      =++|.|++|||||.|+-.++..+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            37899999999999998888877

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=96.56  E-value=0.0052  Score=67.86  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=36.1

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH-H---------CCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF-Q---------LGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~---------~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.+....+..|.++++.-. .         -.+.+|+|||..+.++-..|
T Consensus       416 ~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~  475 (638)
T PRK11388        416 HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQN  475 (638)
T ss_pred             CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcC
Confidence            35689999999998887777777775321 0         02469999999987776544

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.55  E-value=0.019  Score=53.82  Aligned_cols=50  Identities=10%  Similarity=0.041  Sum_probs=38.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHH-HHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKR-LFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~-Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+.. ++..+...|..+|++|+.+
T Consensus       137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~  188 (204)
T cd03250         137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL  188 (204)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            46889999999999999887 67766555655 5666656677788888774

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.55  E-value=0.041  Score=52.92  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||-.. +|+.....+..++..+.++|..+|++|...
T Consensus       146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~  196 (240)
T PRK09493        146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI  196 (240)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 688877888889998877777777777653

>PRK10908 cell division protein FtsE; Provisional

Probab=96.55  E-value=0.057  Score=51.28  Aligned_cols=50  Identities=26%  Similarity=0.296  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~  197 (222)
T PRK10908        147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI  197 (222)
T ss_pred             HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46888999999999999987 688777788889998877777777777763

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.54  E-value=0.025  Score=55.35  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+... |..+|++|...
T Consensus       130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~  181 (251)
T PRK09544        130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL  181 (251)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            46888999999999999987 6888778888888888765 77777777663

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.52  E-value=0.052  Score=53.39  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus       152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~  203 (269)
T PRK13648        152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL  203 (269)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            47899999999999999987 7888888888999888764 77777777764

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.51  E-value=0.025  Score=57.87  Aligned_cols=59  Identities=20%  Similarity=0.246  Sum_probs=42.8

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....|+++|+++..|...+..|..+++..- .++.+|++|+.+ ..+             +..|.++|.++.+.
T Consensus       112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~-~~l-------------l~ti~SRc~~~~~~  170 (325)
T PRK08699        112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAA-DKV-------------LPTIKSRCRKMVLP  170 (325)
T ss_pred             CCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCCh-HhC-------------hHHHHHHhhhhcCC
Confidence            457899999999999888887777887764 456677776663 332             23577788887775

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.51  E-value=0.038  Score=52.17  Aligned_cols=50  Identities=16%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+.+++..+.++ |..+|++|...
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~  192 (214)
T cd03297         141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL  192 (214)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence            46888999999999999887 6888788889999988765 77777777653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=96.49  E-value=0.017  Score=59.19  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=40.1

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....|++||+.+..+.+.+-.|..+++.=- .++.+|++|+.+ ..|.             ..|+.+|.++.+.
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~-~~ll-------------~TI~SRc~~~~~~  163 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQP-SRLL-------------PTIKSRCQQQACP  163 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECCh-hhCc-------------HHHHhhceeeeCC
Confidence            457899999999998776666655555422 356677777764 3333             3577888888775

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.49  E-value=0.053  Score=51.94  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.. .|..+|++|...
T Consensus       155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~  206 (233)
T PRK11629        155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL  206 (233)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46888999999999999887 688888888999998875 477777777763

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.49  E-value=0.029  Score=58.23  Aligned_cols=49  Identities=12%  Similarity=0.145  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC--CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL--GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~--g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.+.  |..+|++|..
T Consensus       147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd  198 (362)
T TIGR03258       147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD  198 (362)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            46899999999999999887 7887777788888888776  6666666655

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.058  Score=52.77  Aligned_cols=49  Identities=20%  Similarity=0.240  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.. .|..+|++|..
T Consensus       138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~  188 (255)
T PRK11248        138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD  188 (255)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46888999999999999887 788888889999998864 47777777765

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.48  E-value=0.041  Score=51.78  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|..
T Consensus       138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  188 (211)
T cd03298         138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ  188 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            46888999999999999987 688888888899988865 47777777765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.029  Score=53.85  Aligned_cols=49  Identities=12%  Similarity=0.175  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus       147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (237)
T PRK11614        147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN  196 (237)
T ss_pred             HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            46888999999999999987 68877788889999888778777777765

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.47  E-value=0.027  Score=56.57  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=42.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus       145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~  195 (303)
T TIGR01288       145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM  195 (303)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            46888999999999999987 788888889999999887888888887763

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.46  E-value=0.05  Score=51.45  Aligned_cols=49  Identities=20%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.. +..+|++|..+
T Consensus       143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~  192 (220)
T cd03263         143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM  192 (220)
T ss_pred             HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence            46888999999999999887 788888888888888765 56777777763

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.46  E-value=0.012  Score=57.41  Aligned_cols=28  Identities=25%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...+=|.|||..|+|||.|+..+++...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~   44 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLR   44 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccccc
Confidence            3456799999999999999999998844

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=96.46  E-value=0.026  Score=54.36  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+..+ |..+|++|...
T Consensus       139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~  190 (235)
T cd03299         139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF  190 (235)
T ss_pred             HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            46888999999999999987 7888888888888888664 77788888764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.46  E-value=0.034  Score=54.69  Aligned_cols=49  Identities=16%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  195 (271)
T PRK13638        146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD  195 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47888999999999999987 68888888899999987777777777765

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.45  E-value=0.06  Score=51.03  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=40.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (214)
T PRK13543        147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG  196 (214)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            46788999999999999987 68887788888998887777777777765

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.45  E-value=0.0055  Score=66.65  Aligned_cols=48  Identities=10%  Similarity=0.157  Sum_probs=36.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|++||.-. +|...+..+.+.+..+. .+..+|+-|.+
T Consensus       495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHr  543 (588)
T PRK11174        495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQ  543 (588)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence            47999999999999999997 68777777777777665 44555555555

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.44  E-value=0.0066  Score=66.21  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=37.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|+|||.-. +|...+..+.+.+..+.. ++.+|+.|.++
T Consensus       481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~  530 (588)
T PRK13657        481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL  530 (588)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH
Confidence            47899999999999999997 687777777777776643 55666666664

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.44  E-value=0.027  Score=54.15  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=40.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|..
T Consensus       153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~  201 (242)
T TIGR03411       153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD  201 (242)
T ss_pred             HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence            46888999999999999987 788888888899988865 6677788776

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.43  E-value=0.041  Score=52.91  Aligned_cols=49  Identities=22%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~  196 (241)
T PRK10895        147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN  196 (241)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence            46888999999999999987 68877777888888887778778888765

>KOG1514|consensus

Probab=96.42  E-value=0.0051  Score=67.98  Aligned_cols=59  Identities=29%  Similarity=0.400  Sum_probs=44.0

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC--CEEEEecCC--ChhhhhcC------CCCcCCccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLG--VVVVATSNR--APDDLYKN------GLQRSNFLP  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g--~~lV~TSN~--~P~~L~~~------gl~r~~F~p  237 (438)
                      +...||++||++.+-.-.+-+|+++|++-...+  .+||+-+|.  -|+.+..+      |+.|-.|.|
T Consensus       507 ~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p  575 (767)
T KOG1514|consen  507 RSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP  575 (767)
T ss_pred             CCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence            457899999999987666889999999876554  355566665  47766653      667777877

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.42  E-value=0.045  Score=53.24  Aligned_cols=49  Identities=29%  Similarity=0.262  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus       148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~  197 (255)
T PRK11231        148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD  197 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            46889999999999999987 68887888889998887777777777776

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.42  E-value=0.022  Score=54.87  Aligned_cols=50  Identities=16%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..+
T Consensus       140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~  191 (237)
T TIGR00968       140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ  191 (237)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999998 6888888888899888765 67777777764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=96.42  E-value=0.012  Score=55.91  Aligned_cols=41  Identities=12%  Similarity=-0.082  Sum_probs=32.9

Q ss_pred             cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          180 KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       180 ~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      ++++|++||... +|+.....+.++++.+.+.|..+|++|..
T Consensus       151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~  192 (213)
T cd03279         151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV  192 (213)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence            468999999986 68877778889999987767777777664

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.41  E-value=0.045  Score=52.46  Aligned_cols=49  Identities=12%  Similarity=0.276  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+. .|..+|++|...
T Consensus       149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~  198 (238)
T cd03249         149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL  198 (238)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH
Confidence            46888999999999999987 68887778888888876 677777777653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR01069 mutS2 MutS2 family protein

Probab=96.41  E-value=0.022  Score=64.66  Aligned_cols=44  Identities=23%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             hcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCCCh
Q psy318          179 SKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      ....+|++||+.. +|+.+...+ ..++..+.+.|..+|+||....
T Consensus       401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            5789999999997 687776655 5688888888888999998853

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.41  E-value=0.063  Score=53.13  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+..+ |..+|++|...
T Consensus       147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~  198 (277)
T PRK13652        147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL  198 (277)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            47889999999999999986 7888888899999998775 77777777764

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=96.41  E-value=0.025  Score=54.64  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             hcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHC-CCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMILKRL-FTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~-g~~lV~TSN~~  221 (438)
                      .+..++++||+.. +++.+...+... ++.|.+. +..+|+++...
T Consensus       108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~  153 (218)
T cd03286         108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH  153 (218)
T ss_pred             CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            4678999999987 555554444444 6777765 77788887763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=96.39  E-value=0.086  Score=50.06  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|...+..+..++..+.. .|..+|++|...
T Consensus       151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~  202 (220)
T TIGR02982       151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN  202 (220)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46888999999999999987 788888889999998876 477788887763

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.38  E-value=0.041  Score=53.99  Aligned_cols=50  Identities=24%  Similarity=0.202  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~  208 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI  208 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999887 6888888889999988764 77777777763

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.38  E-value=0.041  Score=52.35  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      ...=+.|+|++|+|||.|+-.|...+.. ...++-|-.+-
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e   60 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE   60 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence            3444789999999999998888766632 24566666654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.38  E-value=0.028  Score=61.11  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+...+..+.+ +..+|+.|.++
T Consensus       490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~  539 (582)
T PRK11176        490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL  539 (582)
T ss_pred             HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence            47899999999999999997 688777777777777654 45555555553

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0062  Score=67.60  Aligned_cols=24  Identities=29%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =|.|.||||+|||.|...++.++.
T Consensus       352 ILcLVGPPGVGKTSLgkSIA~al~  375 (782)
T COG0466         352 ILCLVGPPGVGKTSLGKSIAKALG  375 (782)
T ss_pred             EEEEECCCCCCchhHHHHHHHHhC
Confidence            388999999999999999999985

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.37  E-value=0.041  Score=52.63  Aligned_cols=49  Identities=14%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.. |..+|++|...
T Consensus       147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~  196 (236)
T cd03253         147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL  196 (236)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence            46888999999999999987 688777778888888765 77777777653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=96.36  E-value=0.043  Score=60.59  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      .+|.+++.++++|++||--. +|...+..+.+++..+...|..+|+|+..|..++.
T Consensus       176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~  231 (617)
T TIGR00955       176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELF  231 (617)
T ss_pred             HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHH
Confidence            57899999999999999987 78888888888999888788888899888755544

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.36  E-value=0.042  Score=52.29  Aligned_cols=50  Identities=14%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~  207 (228)
T PRK10584        156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL  207 (228)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            46888999999999999987 7888888899999888654 77777777764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=96.34  E-value=0.08  Score=53.49  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       175 alA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd  224 (305)
T PRK13651        175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD  224 (305)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence            47888999999999999987 68887888889999988778777766655

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.33  E-value=0.019  Score=62.08  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=40.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+...|..+|++|.+.
T Consensus       464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~  514 (544)
T TIGR01842       464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP  514 (544)
T ss_pred             HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence            47899999999999999886 687777777777777765677777777774

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.33  E-value=0.015  Score=63.32  Aligned_cols=49  Identities=12%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+.. ++.+|+.|+++
T Consensus       486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~  535 (592)
T PRK10790        486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL  535 (592)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence            47899999999999999997 687777777777776654 46677777774

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.32  E-value=0.067  Score=53.12  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|......|..++..+... |..||++|...
T Consensus       153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~  204 (282)
T PRK13640        153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI  204 (282)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            47899999999999999987 7888888888999988764 77777776653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.31  E-value=0.11  Score=49.37  Aligned_cols=49  Identities=14%  Similarity=0.312  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+.+++..+. .|..+|++|...
T Consensus       149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~  198 (229)
T cd03254         149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL  198 (229)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence            47888999999999999886 78887777888888874 577777777653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=96.31  E-value=0.027  Score=59.30  Aligned_cols=49  Identities=22%  Similarity=0.207  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd  198 (402)
T PRK09536        149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD  198 (402)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            47899999999999999887 78888888889999998778777777765

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.31  E-value=0.12  Score=50.92  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.+++++++||--. +|+.....+..++..+...|..+|++|...
T Consensus       149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~  199 (255)
T cd03236         149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL  199 (255)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            46788899999999999987 688877778889998877777788887763

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=96.30  E-value=0.014  Score=63.63  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL  230 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl  230 (438)
                      --.|+|||++.+....+..|.+++..-.          .-.+.+|+|||..+.++-..|.
T Consensus       323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~  382 (538)
T PRK15424        323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGR  382 (538)
T ss_pred             CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhccc
Confidence            4579999999999888887777775421          1123799999999877655443

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=96.30  E-value=0.0049  Score=67.83  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=27.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeech
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHFN  100 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf~  100 (438)
                      -.||+|.|++|+|||+|+.++...++.. .-.|++++
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~   52 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLG   52 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc
Confidence            4589999999999999999998877532 13455543

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.30  E-value=0.0093  Score=61.21  Aligned_cols=36  Identities=17%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             CCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           65 PKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ++| ++|.||+|+|||++|.++...++...+.++..-
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti  157 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI  157 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence            345 579999999999999999988864445566553

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.29  E-value=0.025  Score=58.31  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~  200 (343)
T TIGR02314       150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE  200 (343)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46899999999999999987 7888888888999998765 7777777765

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.29  E-value=0.03  Score=56.16  Aligned_cols=49  Identities=10%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+ +..+|+||...
T Consensus       143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l  192 (301)
T TIGR03522       143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM  192 (301)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence            46888999999999999987 788888888889988854 67788888774

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.29  E-value=0.029  Score=54.20  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+. |..+|++|...
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~  192 (241)
T PRK14250        141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM  192 (241)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence            46888999999999999987 6888788888999988764 77777777663

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.28  E-value=0.091  Score=51.76  Aligned_cols=49  Identities=12%  Similarity=0.015  Sum_probs=40.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~  220 (269)
T cd03294         170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD  220 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47899999999999999887 6888788889999888654 7777777765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.28  E-value=0.046  Score=56.99  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|......+..++..+... |..+|++|...
T Consensus       154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~  205 (375)
T PRK09452        154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ  205 (375)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46899999999999999887 7887777788888888764 77777666653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.28  E-value=0.034  Score=57.79  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+..++..+... |..+|++|...
T Consensus       139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~  190 (363)
T TIGR01186       139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL  190 (363)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            37899999999999999886 7888888888888888754 77777776653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK05973 replicative DNA helicase; Provisional

Probab=96.27  E-value=0.041  Score=54.05  Aligned_cols=45  Identities=20%  Similarity=0.139  Sum_probs=29.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh---HHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM---LDVHAKI  110 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm---~~v~~~l  110 (438)
                      ..-++|.|+||+|||.++--|..... ....++.|-.|-   .++.+++
T Consensus        64 Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes~~~i~~R~  111 (237)
T PRK05973         64 GDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYTEQDVRDRL  111 (237)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHH
Confidence            34478899999999999888765543 235566665544   3444444

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=96.26  E-value=0.018  Score=62.69  Aligned_cols=50  Identities=22%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      .--.|+|||++.+....+..|.+++..-.          .-.+.+|+|||.++.++-..|
T Consensus       307 ~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g  366 (526)
T TIGR02329       307 HRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQG  366 (526)
T ss_pred             CCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhc
Confidence            34679999999999888777777765421          112379999999987765543

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.26  E-value=0.067  Score=52.88  Aligned_cols=49  Identities=14%  Similarity=0.023  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||-.. +|+.....+.+++..+.+.|..+|++|..
T Consensus       153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~  202 (264)
T PRK13546        153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN  202 (264)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46888999999999999886 68777777888888887778777777765

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.25  E-value=0.12  Score=49.06  Aligned_cols=49  Identities=16%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+. ..+|++|...
T Consensus       151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~  200 (227)
T cd03260         151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM  200 (227)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH
Confidence            46888999999999999987 7888888888999988776 6677777664

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=96.24  E-value=0.033  Score=56.71  Aligned_cols=58  Identities=10%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....|++||+.+....+.+-.|..+++.-- . ..+|++++. |+.             ++..|+++|.++.+.
T Consensus       123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~~~-~~~-------------Ll~TI~SRcq~i~f~  180 (314)
T PRK07399        123 APRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIAPS-PES-------------LLPTIVSRCQIIPFY  180 (314)
T ss_pred             CCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEECC-hHh-------------CcHHHHhhceEEecC
Confidence            457999999999988777777777777654 4 356666664 333             345678888888886

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.24  E-value=0.026  Score=58.02  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus       182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l  232 (340)
T PRK13536        182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM  232 (340)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            46888999999999999988 798888889999999988888888888763

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.23  E-value=0.082  Score=50.00  Aligned_cols=49  Identities=18%  Similarity=0.367  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|...
T Consensus       149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~  198 (221)
T cd03244         149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL  198 (221)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence            46889999999999999987 688877788888888754 56667777653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG1051|consensus

Probab=96.23  E-value=0.039  Score=63.12  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh--hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC--ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK  142 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l--~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (438)
                      +--+++-||.|+|||=|+.++...+  .-+.-.|+-+-+||. +-    +.-..             |++          
T Consensus       591 ~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vs----kligs-------------p~g----------  642 (898)
T KOG1051|consen  591 DAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VS----KLIGS-------------PPG----------  642 (898)
T ss_pred             CeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-hh----hccCC-------------Ccc----------
Confidence            3458899999999999999998888  334557888888887 32    22111             111          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhhHHHHHHHHHHHH---H-------CC
Q psy318          143 EREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIADAMILKRLFTELF---Q-------LG  211 (438)
Q Consensus       143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~---~-------~g  211 (438)
                                      .+|.     .....++..+- +-..|++||||+.-++.-.+.|.++++.-.   .       ..
T Consensus       643 ----------------yvG~-----e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN  701 (898)
T KOG1051|consen  643 ----------------YVGK-----EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN  701 (898)
T ss_pred             ----------------cccc-----hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence                            0111     11123333333 346999999999988877777777776532   1       22


Q ss_pred             CEEEEecCCChhhhhcC
Q psy318          212 VVVVATSNRAPDDLYKN  228 (438)
Q Consensus       212 ~~lV~TSN~~P~~L~~~  228 (438)
                      +++|+|||..-..+..+
T Consensus       702 ~I~IMTsn~~~~~i~~~  718 (898)
T KOG1051|consen  702 AIFIMTSNVGSSAIAND  718 (898)
T ss_pred             eEEEEecccchHhhhcc
Confidence            46899999976666554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.22  E-value=0.024  Score=53.29  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=38.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+. .|..+|++|+.
T Consensus       135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~  183 (207)
T cd03369         135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHR  183 (207)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            46888999999999999987 68777777888888874 46677777765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=96.22  E-value=0.072  Score=52.44  Aligned_cols=49  Identities=20%  Similarity=0.207  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.+. |..+|++|..
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~  211 (268)
T PRK10419        161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD  211 (268)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence            47888999999999999886 6887777888889888764 6677777766

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.21  E-value=0.028  Score=53.36  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             HHHHHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHC-CCEEEEecCC
Q psy318          173 VANDIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       173 va~~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      +++.+..++++|++||... +|+.... .+..++..+... |..+|++|..
T Consensus       132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~  182 (204)
T cd03240         132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD  182 (204)
T ss_pred             HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence            5677788999999999997 6877777 788889888765 6677777776

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.089  Score=51.05  Aligned_cols=49  Identities=16%  Similarity=0.168  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+..++..+.. +..+|++|...
T Consensus       159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~  208 (253)
T PRK14261        159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM  208 (253)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence            46888999999999999987 688877788899988865 46677777653

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.20  E-value=0.061  Score=55.20  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=40.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus       150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~  200 (343)
T PRK11153        150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE  200 (343)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46889999999999999987 7888888888999888654 7777777766

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.19  E-value=0.079  Score=51.06  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+... |..+|++|..+
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~  214 (236)
T cd03267         163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM  214 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence            47888999999999999987 7888888899999888664 66777777764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.18  E-value=0.042  Score=58.84  Aligned_cols=50  Identities=14%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+.+.+++++++|+|||--. +.+..+..||.++..|.+.|+.||+-|.+-
T Consensus       150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL  200 (501)
T COG3845         150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL  200 (501)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence            46788999999999999875 577778889999999999999888887764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.17  E-value=0.033  Score=53.22  Aligned_cols=49  Identities=12%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +|..+|++|+..
T Consensus       148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~  197 (234)
T cd03251         148 AIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRL  197 (234)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence            47888999999999999987 68887788888888885 477777777664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.17  E-value=0.12  Score=51.40  Aligned_cols=50  Identities=14%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~  202 (283)
T PRK13636        151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI  202 (283)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            46888999999999999987 7888888899999988765 77777776653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=96.16  E-value=0.1  Score=51.78  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....|..++..+.. .|..+|++|...
T Consensus       154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~  205 (280)
T PRK13633        154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM  205 (280)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence            47899999999999999987 788888889999998875 477777777664

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.16  E-value=0.053  Score=55.98  Aligned_cols=49  Identities=18%  Similarity=0.202  Sum_probs=39.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+...+..+... |..+|++|..
T Consensus       144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd  194 (353)
T TIGR03265       144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD  194 (353)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46899999999999999987 7877777788888887664 7776666654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=96.16  E-value=0.013  Score=62.89  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+.+.+..+. .+..+|+.|.+.
T Consensus       468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~  517 (529)
T TIGR02857       468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL  517 (529)
T ss_pred             HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence            47899999999999999987 68777776767776664 456666666664

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.15  E-value=0.075  Score=51.90  Aligned_cols=50  Identities=24%  Similarity=0.289  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.+++||++||--. +|......+.+++..+..+ |..+|++|...
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~  213 (262)
T PRK09984        162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV  213 (262)
T ss_pred             HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46888999999999999987 7888888899999998754 77777777664

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.045  Score=56.62  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus       144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~  195 (356)
T PRK11650        144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ  195 (356)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46899999999999999987 7887777788888888765 77777777653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.14  E-value=0.043  Score=57.45  Aligned_cols=50  Identities=16%  Similarity=0.048  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+.+++..+... |..+|++|...
T Consensus       174 ~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl  225 (382)
T TIGR03415       174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL  225 (382)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            46889999999999999887 7888888888888888764 77777777663

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.14  E-value=0.0096  Score=61.79  Aligned_cols=27  Identities=37%  Similarity=0.690  Sum_probs=24.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+.|+|.||||+|||+|+.++...+.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            458899999999999999999988884

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.14  Score=50.73  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus       150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~  201 (279)
T PRK13650        150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL  201 (279)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            47899999999999999887 7888788888999998764 77777777764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.13  E-value=0.059  Score=57.51  Aligned_cols=50  Identities=28%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~  195 (490)
T PRK10938        145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF  195 (490)
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            46888999999999999987 788888889999999877787777777653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.13  E-value=0.061  Score=52.06  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. |..+|++|..
T Consensus       152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~  200 (246)
T PRK14269        152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN  200 (246)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            47899999999999999987 688777788888988754 7666666665

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.12  E-value=0.0045  Score=55.98  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      ..++.++|+|++|+|||+|+..+...+...
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            456899999999999999999998888543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.12  E-value=0.028  Score=55.12  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             hHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEec
Q psy318          171 PPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATS  218 (438)
Q Consensus       171 ~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TS  218 (438)
                      -++|.-++.++++|++||--. +|+.....+..++..|...+ ..+|+.|
T Consensus       147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t  196 (235)
T COG1122         147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT  196 (235)
T ss_pred             HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            457888889999999999987 78888888889999998874 4444443

>cd00268 DEADc DEAD-box helicases

Probab=96.11  E-value=0.15  Score=47.19  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=29.6

Q ss_pred             hhcCCeEEEecCCCCC-hhhHHHHHHHHHHHHHCCCEEEEecCCChhh
Q psy318          178 ISKTWLICFDEFQVTD-IADAMILKRLFTELFQLGVVVVATSNRAPDD  224 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d-~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~  224 (438)
                      +...+++++||+|... .+-...+..+++.+ ..++.++++|-.+|..
T Consensus       141 ~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~~~~SAT~~~~  187 (203)
T cd00268         141 LSKVKYLVLDEADRMLDMGFEDQIREILKLL-PKDRQTLLFSATMPKE  187 (203)
T ss_pred             hhhCCEEEEeChHHhhccChHHHHHHHHHhC-CcccEEEEEeccCCHH
Confidence            3567899999999854 22234455566655 3466777777776643

A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.11  E-value=0.043  Score=59.36  Aligned_cols=48  Identities=17%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+.. +..+|+.|.+
T Consensus       479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~  527 (571)
T TIGR02203       479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHR  527 (571)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehh
Confidence            47899999999999999997 687777777777776654 4455555555

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.10  E-value=0.061  Score=57.88  Aligned_cols=50  Identities=20%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~  200 (510)
T PRK15439        150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL  200 (510)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47888999999999999887 788888889999999887787777777663

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.10  E-value=0.03  Score=61.03  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=38.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+...+..+. .|..+|+.|.+.
T Consensus       461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~  510 (569)
T PRK10789        461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRL  510 (569)
T ss_pred             HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch
Confidence            47899999999999999987 68777676767776664 566677777664

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.08  E-value=0.055  Score=52.28  Aligned_cols=49  Identities=14%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh-----------cccceeeechhh---hHHHHHHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE-----------TKQKQRVHFNKF---MLDVHAKIHEVKKI  116 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~-----------~~~k~R~Hf~~f---m~~v~~~l~~~~~~  116 (438)
                      -.|+|++|+|||+|+--+..++.           .....+|.|...   ..+++++++.+...
T Consensus         4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~   66 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH   66 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence            36899999999999988876653           123456766443   45678888776543

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.055  Score=55.73  Aligned_cols=49  Identities=14%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd  188 (352)
T PRK11144        138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS  188 (352)
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            46899999999999999886 6887777888888888765 7767777665

>PLN03211 ABC transporter G-25; Provisional

Probab=96.08  E-value=0.069  Score=59.65  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L  225 (438)
                      .+|..++.++++|++||--. +|...+..+.+++..+.+.|..+|+|+..+..++
T Consensus       216 ~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i  270 (659)
T PLN03211        216 SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV  270 (659)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence            57899999999999999987 7888888889999998878888888988865433

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.08  E-value=0.035  Score=52.03  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      +..+=+.|+|++|+|||.|+-.|....... ..++-|-.+
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~   48 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT   48 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence            444558999999999999988876655322 344544333

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.07  E-value=0.044  Score=52.63  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             HHHHHh----hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          173 VANDII----SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       173 va~~~~----~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +|..++    ..+++|++||--. +|+.....+.+++..+.. +..+|+|++.
T Consensus       169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~  220 (243)
T cd03272         169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR  220 (243)
T ss_pred             HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            566664    3589999999997 688877778888887755 6777777776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=96.07  E-value=0.08  Score=52.04  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||-.. +|+.....+.+++..+... |..+|++|..
T Consensus       159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~  209 (267)
T PRK15112        159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH  209 (267)
T ss_pred             HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence            46888999999999999887 7888778888999888764 7667777665

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.07  E-value=0.042  Score=58.21  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh-cccceeeechhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE-TKQKQRVHFNKF  102 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~-~~~k~R~Hf~~f  102 (438)
                      ++-+.|.||.|+|||+++-.+...+. ...+.++.+-.+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~  259 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL  259 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            34689999999999999888877665 345678887544

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.06  E-value=0.059  Score=56.72  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|+.....+..++..+.. .|..+|++|...
T Consensus       174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~  225 (400)
T PRK10070        174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL  225 (400)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence            46889999999999999887 788888888888988865 477777777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=96.02  E-value=0.043  Score=58.88  Aligned_cols=49  Identities=16%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus       153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~  202 (506)
T PRK13549        153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK  202 (506)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence            47888999999999999986 78888888999999987778777777765

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=96.02  E-value=0.016  Score=60.14  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             HHHhhcCCeEEEecCCCCC---hhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccc
Q psy318          175 NDIISKTWLICFDEFQVTD---IADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS  250 (438)
Q Consensus       175 ~~~~~~~~lLc~DEf~v~d---~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~  250 (438)
                      -.++++.+.++|+++-..+   ...+.-+-+|++.||++++.+++++..+|++|+.++-....|.+.++||.++...-.
T Consensus       280 laLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~~~~~~~~f~RT~SRL~Em~~~~y  358 (362)
T PF03969_consen  280 LALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQGGRLAFEFQRTASRLSEMQSEEY  358 (362)
T ss_pred             HHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHhCCCchhhhhHHHHHHHHHhhHHH
Confidence            3466889999999999865   455677999999999999999999999999999987777789999999999876433

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.02  E-value=0.056  Score=52.35  Aligned_cols=42  Identities=19%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             cCCeEEEecCCCCC---hhh-HHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVTD---IAD-AMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~d---~~d-a~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ++++|+||=+...-   +.. -.+++.|++.+.+.|+.+|+|+..+
T Consensus       126 ~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~  171 (237)
T TIGR03877       126 NAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVS  171 (237)
T ss_pred             CCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            58899999888632   211 1346778888889999999997654

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.01  E-value=0.014  Score=52.12  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH  107 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~  107 (438)
                      =|-++|++|+|||++..++++++=.....--+.|.|+...|
T Consensus        55 VlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~h   95 (127)
T PF06309_consen   55 VLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHH   95 (127)
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccccc
Confidence            34499999999999999999997322223334444554443

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.01  E-value=0.056  Score=55.84  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=38.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|..-...+..++..+... |..+|+.|..
T Consensus       146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd  196 (351)
T PRK11432        146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD  196 (351)
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46899999999999999887 6877666777778777654 7666666654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=95.99  E-value=0.038  Score=59.54  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++.++++||-.. +|...+.+|.+-+..+..+|+.+|+-+.+|
T Consensus       482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP  532 (580)
T COG4618         482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP  532 (580)
T ss_pred             HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence            36899999999999999998 587777888899999999999888888885

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.99  E-value=0.1  Score=49.71  Aligned_cols=48  Identities=13%  Similarity=0.116  Sum_probs=33.5

Q ss_pred             HHHHHHhhcCCeEEEec-CCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDE-FQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DE-f~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++|| +...|......+..++....... .+|++|..
T Consensus       114 ~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~-~ii~vsH~  162 (213)
T PRK15177        114 AFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQK-GLIVLTHN  162 (213)
T ss_pred             HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCC-cEEEEECC
Confidence            46888999999999999 56678777666777664433332 35556555

>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2

Probab=95.94  E-value=0.041  Score=51.60  Aligned_cols=132  Identities=23%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHH-HHHH-HHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLD-VHAK-IHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~-v~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      |.+|=+.|-|||.  .++.-++ ..-+..||++-+||.. .+.. +..++ ..+.-.  -...+- .+...+.+ +++..
T Consensus         6 i~vytG~GKGKTT--AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~-~l~~~~--~~~~g~-~f~~~~~~-~~~~~   78 (172)
T PF02572_consen    6 IQVYTGDGKGKTT--AALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK-KLPNVE--IERFGK-GFVWRMNE-EEEDR   78 (172)
T ss_dssp             EEEEESSSS-HHH--HHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG-GGT--E--EEE--T-T----GGG-HHHHH
T ss_pred             EEEEeCCCCCchH--HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH-hCCeEE--EEEcCC-cccccCCC-cHHHH
Confidence            7889999999998  5666666 3467889999999988 3322 11111 110000  000000 00001111 11111


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          145 EREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      ...++.+                    ..|++.+  ..+++|++||+-..   ..-+...+..+++.. ....-||+|+.
T Consensus        79 ~~~~~~~--------------------~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r-p~~~evVlTGR  137 (172)
T PF02572_consen   79 AAAREGL--------------------EEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENR-PESLEVVLTGR  137 (172)
T ss_dssp             HHHHHHH--------------------HHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS--TT-EEEEE-S
T ss_pred             HHHHHHH--------------------HHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC-CCCeEEEEECC
Confidence            1111111                    1244444  46999999998752   111222344455532 34568999999


Q ss_pred             CChhhhhc
Q psy318          220 RAPDDLYK  227 (438)
Q Consensus       220 ~~P~~L~~  227 (438)
                      .+|.+|-+
T Consensus       138 ~~~~~l~e  145 (172)
T PF02572_consen  138 NAPEELIE  145 (172)
T ss_dssp             S--HHHHH
T ss_pred             CCCHHHHH
Confidence            99988764

5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.

>cd01394 radB RadB

Probab=95.94  E-value=0.03  Score=53.01  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      .=+.|+|++|+|||.|+-.|...+.. ...++-|-
T Consensus        20 ~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi   53 (218)
T cd01394          20 TVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYI   53 (218)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence            33899999999999999988776642 34566554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.92  E-value=0.13  Score=56.20  Aligned_cols=50  Identities=14%  Similarity=0.029  Sum_probs=41.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl  203 (549)
T PRK13545        153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL  203 (549)
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            46888999999999999886 788877788888888877787777777663

>TIGR00416 sms DNA repair protein RadA

Probab=95.92  E-value=0.056  Score=57.79  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=27.6

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .+...=++|+|+||+|||+|+-.|...+... ..++-|-.+
T Consensus        91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~  130 (454)
T TIGR00416        91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSG  130 (454)
T ss_pred             ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence            3444558999999999999999887666432 234545443

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=95.92  E-value=0.025  Score=62.84  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .||+|+|++|+|||+++.++...++
T Consensus        26 g~vli~G~~GtgKs~lar~l~~~lp   50 (633)
T TIGR02442        26 GGVLIRGEKGTAKSTAARGLAALLP   50 (633)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHhCC
Confidence            5899999999999999999988874

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=95.91  E-value=0.032  Score=60.71  Aligned_cols=50  Identities=18%  Similarity=0.266  Sum_probs=38.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHH-HHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKR-LFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~-Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+.+ ++..+...|..+|+.|+++
T Consensus       480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~  531 (555)
T TIGR01194       480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD  531 (555)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence            47899999999999999997 68776665544 5555555677777777763

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.91  E-value=0.13  Score=48.70  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+.+++..+... ..+|++|...
T Consensus       150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~  199 (220)
T cd03245         150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP  199 (220)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH
Confidence            46888999999999999987 6888888888888887654 5666666653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=95.91  E-value=0.015  Score=52.01  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+=++|.+|+..+.+....-                  ..++.++|.+++|+|||.+|-.+...+.
T Consensus         2 ~~lr~~Q~~ai~~i~~~~~~~------------------~~~~~~ll~~~tGsGKT~~~~~~~~~l~   50 (184)
T PF04851_consen    2 YKLRPYQQEAIARIINSLENK------------------KEERRVLLNAPTGSGKTIIALALILELA   50 (184)
T ss_dssp             -EE-HHHHHHHHHHHHHHHTT------------------SGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhc------------------CCCCCEEEEECCCCCcChhhhhhhhccc
Confidence            456689999988777654321                  1356899999999999999997666653

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=95.90  E-value=0.045  Score=56.77  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=39.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd  193 (369)
T PRK11000        143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  193 (369)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            46899999999999999887 7887777788888888764 7777777665

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=95.89  E-value=0.046  Score=61.04  Aligned_cols=48  Identities=13%  Similarity=0.204  Sum_probs=36.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+  .|..+|+.|.++
T Consensus       621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~  669 (708)
T TIGR01193       621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRL  669 (708)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecch
Confidence            47899999999999999987 6776666666555554  466667777764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=95.87  E-value=0.085  Score=53.70  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       110 alaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187       110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46888999999999999887 7888778888888888764 7777777665

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.85  E-value=0.11  Score=57.99  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=38.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+.+.+..+.. +..+|+.|.++
T Consensus       611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl  660 (694)
T TIGR03375       611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRT  660 (694)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence            47899999999999999887 688777777777777764 55566666664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=95.85  E-value=0.16  Score=54.50  Aligned_cols=50  Identities=24%  Similarity=0.175  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus       151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~  201 (501)
T PRK10762        151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL  201 (501)
T ss_pred             HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47888999999999999887 788888888899999877787777777654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.84  E-value=0.11  Score=51.24  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=38.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. .+..+|++|..
T Consensus       164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~  212 (269)
T PRK14259        164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHN  212 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence            46888999999999999987 68887788888998884 46666777665

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.84  E-value=0.056  Score=56.50  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=27.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhccc-ceeeechh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQ-KQRVHFNK  101 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~-k~R~Hf~~  101 (438)
                      +.-+.|.||+|+|||+++..+...+.... +.++.+-.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit  174 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT  174 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            45689999999999999999987764332 24665543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.82  E-value=0.1  Score=54.36  Aligned_cols=49  Identities=16%  Similarity=0.210  Sum_probs=37.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+...+..+.. .|..+|++|..
T Consensus       159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd  209 (377)
T PRK11607        159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD  209 (377)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            46899999999999999887 687766666666666654 57778877775

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=95.82  E-value=0.067  Score=50.55  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ..+++|++||-.. +|+.....+..++..+.+ +..+|++|..+
T Consensus       134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~  176 (197)
T cd03278         134 RPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRK  176 (197)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH
Confidence            4569999999987 688888888888888865 56677777663

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=95.82  E-value=0.014  Score=61.12  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL  230 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl  230 (438)
                      --.|+|||++..+...+..|.++++.-.          ..++.+|+|||.++..+-..|.
T Consensus       238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~  297 (457)
T PRK11361        238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT  297 (457)
T ss_pred             CCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence            4589999999999877776766665421          1125899999999887766443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=95.79  E-value=0.065  Score=61.03  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             hcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ....|+++||+.. +|+.+...+ ..+++.+.+.|..+|+||+.+
T Consensus       406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~  450 (782)
T PRK00409        406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK  450 (782)
T ss_pred             CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH
Confidence            5789999999997 677765555 467888888888888898874

>KOG0061|consensus

Probab=95.79  E-value=0.072  Score=59.02  Aligned_cols=56  Identities=20%  Similarity=0.369  Sum_probs=49.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      .+|.+++.++.+|++||--. +|...|..+-+++..+...|+.||+|=..|+.+++.
T Consensus       180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~  236 (613)
T KOG0061|consen  180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFE  236 (613)
T ss_pred             HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHH
Confidence            47899999999999999998 788888888899999998898888888888888875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=95.79  E-value=0.15  Score=54.81  Aligned_cols=50  Identities=22%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.. .|..||++|...
T Consensus       178 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~  229 (520)
T TIGR03269       178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP  229 (520)
T ss_pred             HHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            47889999999999999887 788888888889988865 476666666653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.79  E-value=0.18  Score=47.91  Aligned_cols=49  Identities=14%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|..+
T Consensus       160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~  209 (226)
T cd03248         160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL  209 (226)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence            47888999999999999986 788888888888888754 56667776653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=95.79  E-value=0.0067  Score=58.35  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+|+|+|++|+|||||+..+-.-+|
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lLP   47 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLLP   47 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence            47999999999999999999987775

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.77  E-value=0.11  Score=51.85  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             HHHHHhhcCCeEEEec-CCCCChhhHHHHHHHHHHHHH-CCCEEEEe
Q psy318          173 VANDIISKTWLICFDE-FQVTDIADAMILKRLFTELFQ-LGVVVVAT  217 (438)
Q Consensus       173 va~~~~~~~~lLc~DE-f~v~d~~da~iL~~Lfn~l~~-~g~~lV~T  217 (438)
                      ||+.++.++.+|++|| |+.+|+-.-..|-..|..+.. .|..+|+-
T Consensus       146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV  192 (309)
T COG1125         146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV  192 (309)
T ss_pred             HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE
Confidence            7899999999999999 556786554445555555543 35545443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.18  Score=49.37  Aligned_cols=49  Identities=24%  Similarity=0.261  Sum_probs=42.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      -+|+.++-++++|++||--. +|+-..+-+-.|+..|.+.=.++|+|=|-
T Consensus       159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm  208 (253)
T COG1117         159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM  208 (253)
T ss_pred             HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence            57899999999999999987 78888888899999998777788888775

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=95.76  E-value=0.15  Score=55.29  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus       486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~  535 (576)
T TIGR02204       486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL  535 (576)
T ss_pred             HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch
Confidence            46899999999999999987 67776666777777665 466777777775

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=95.75  E-value=0.077  Score=54.28  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=40.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...|++||+.+....+.+-.|..+++.=- .++.+|++||.+ ..|             +..|+.+|.++.+.
T Consensus       113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~-~~l-------------LpTIrSRCq~i~~~  170 (319)
T PRK08769        113 IAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQP-ARL-------------PATIRSRCQRLEFK  170 (319)
T ss_pred             CcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECCh-hhC-------------chHHHhhheEeeCC
Confidence            46899999999988776666666665532 245677777663 323             34688999999887

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=95.74  E-value=0.026  Score=61.78  Aligned_cols=49  Identities=16%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus       481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~  530 (585)
T TIGR01192       481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRL  530 (585)
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCh
Confidence            47899999999999999997 68877777777777764 466777777774

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=95.71  E-value=0.066  Score=55.32  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=38.9

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....|++||+.+......+-.|..+++.=- .++.+|++|+.+ +.|.             ..|+.+|..+.+.
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~-~~LL-------------pTI~SRcq~i~~~  189 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARI-DRLL-------------PTILSRCRQFPMT  189 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECCh-hhCc-------------HHHHhcCEEEEec
Confidence            457899999999998776666666666432 345566666653 4433             3466777777766

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=95.71  E-value=0.036  Score=53.92  Aligned_cols=50  Identities=32%  Similarity=0.418  Sum_probs=40.3

Q ss_pred             HHHHHHhh-------cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIIS-------KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~-------~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.       ++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       136 ~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~  193 (248)
T PRK03695        136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL  193 (248)
T ss_pred             HHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            36777775       669999999987 788888888899998877787788887763

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=95.70  E-value=0.11  Score=53.71  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|+.|..
T Consensus       146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd  196 (353)
T PRK10851        146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD  196 (353)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46899999999999999887 7888778888899888765 6655555444

>TIGR01587 cas3_core CRISPR-associated helicase Cas3

Probab=95.68  E-value=0.14  Score=51.97  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L  225 (438)
                      ..+++|||+|......-..+..++..+...+.++|+.|-..|..+
T Consensus       125 ~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp~~l  169 (358)
T TIGR01587       125 NSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLPKFL  169 (358)
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence            378999999997643333366777777766777777777767544

This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=95.67  E-value=0.051  Score=60.45  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=35.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+   +..+|+.|.++
T Consensus       598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~  645 (686)
T TIGR03797       598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL  645 (686)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh
Confidence            47899999999999999987 6877666565555544   55667777763

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.67  E-value=0.13  Score=50.60  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=28.5

Q ss_pred             cCCeEEEecCCCCC---hhh-HHHHHHHHHHHHHCCCEEEEecCC
Q psy318          180 KTWLICFDEFQVTD---IAD-AMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       180 ~~~lLc~DEf~v~d---~~d-a~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      ++++++||=+...-   ... ..++..|++.+.+.++.+++|+..
T Consensus       131 ~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e~  175 (259)
T TIGR03878       131 KVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQK  175 (259)
T ss_pred             CCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            68999999886432   111 124566788888889888888764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.65  E-value=0.02  Score=62.57  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus       485 alARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~  534 (574)
T PRK11160        485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRL  534 (574)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCh
Confidence            47899999999999999987 68777777777777765 466666677664

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=95.63  E-value=0.065  Score=57.87  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....|.+++.   +.|..||++|..
T Consensus       165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd  211 (530)
T PRK15064        165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHD  211 (530)
T ss_pred             HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCC
Confidence            46888999999999999987 68777776666664   456666666654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.63  E-value=0.29  Score=50.03  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|..++.++++|++||--. +|...+..+..++..+.+. |..+|++|...
T Consensus       171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl  222 (330)
T PRK09473        171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL  222 (330)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            47889999999999999887 7888778888889888764 77777777653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.63  E-value=0.22  Score=49.68  Aligned_cols=48  Identities=17%  Similarity=0.188  Sum_probs=39.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. +..+|++|+.
T Consensus       192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~  240 (286)
T PRK14275        192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHN  240 (286)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence            46889999999999999986 788888888888888754 5667777765

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.61  E-value=0.16  Score=48.39  Aligned_cols=41  Identities=17%  Similarity=0.010  Sum_probs=28.5

Q ss_pred             cCCeEEEecCCCC---ChhhH-HHHHHHHHHHHHCCCEEEEecCC
Q psy318          180 KTWLICFDEFQVT---DIADA-MILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       180 ~~~lLc~DEf~v~---d~~da-~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +.+++++|-+...   ++... ..+..|...+.+.|+.+|+|+..
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~  165 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY  165 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            4678999998875   22222 23455667777889999999874

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=95.61  E-value=0.12  Score=53.20  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus       141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~  192 (354)
T TIGR02142       141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL  192 (354)
T ss_pred             HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            47889999999999999987 7888778888889888765 77677776653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.59  E-value=0.12  Score=52.87  Aligned_cols=49  Identities=20%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|...+..+..++..+.+. |..+|+.|..
T Consensus       171 ~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd  221 (331)
T PRK15079        171 GIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD  221 (331)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            47888999999999999987 7888888888999988764 7666666654

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=95.59  E-value=0.076  Score=59.30  Aligned_cols=47  Identities=15%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+.   +.+..+|+.|.+.
T Consensus       625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~---~~~~T~IiitHrl  672 (710)
T TIGR03796       625 EIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRGCTCIIVAHRL  672 (710)
T ss_pred             HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH---hcCCEEEEEecCH
Confidence            47899999999999999987 67766655544444   3567777777774

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.23  Score=48.30  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+..++++++|||--. +|+.....+..++.++.+.|..+|++|..
T Consensus       143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~  192 (245)
T COG4555         143 AIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI  192 (245)
T ss_pred             HHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc
Confidence            47999999999999999887 68877788899999999999888887765

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.074  Score=57.99  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++++|||--. +|...+.++.+.+..+.+. ..+++.|.+.
T Consensus       466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl  515 (559)
T COG4988         466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL  515 (559)
T ss_pred             HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh
Confidence            46899999999999999987 6888888888888888877 4555666664

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=95.53  E-value=0.16  Score=54.39  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd  200 (500)
T TIGR02633       151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK  200 (500)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            47888999999999999887 78888888999999988778766666654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.53  E-value=0.15  Score=46.37  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=24.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +.+.|++|+|||.++..+...+... ..|+.+
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~   33 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLL   33 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEE
Confidence            5688999999999999998877533 445654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=95.53  E-value=0.03  Score=55.85  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++||+||--. +|+.....+..++..+. .++.+|++|...
T Consensus       148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~  197 (275)
T cd03289         148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI  197 (275)
T ss_pred             HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH
Confidence            47899999999999999887 68777777888888775 466777777764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK04040 adenylate kinase; Provisional

Probab=95.52  E-value=0.019  Score=54.10  Aligned_cols=42  Identities=29%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH  107 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~  107 (438)
                      |+=+.|+|.||+|||+++..+...++. .-.-++|.++|.++-
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~-~~~~~~~g~~~~~~a   43 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIVNFGDVMLEVA   43 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhcc-CCeEEecchHHHHHH
Confidence            456899999999999999999998852 234577777776653

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=95.52  E-value=0.17  Score=54.02  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus       144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~  194 (491)
T PRK10982        144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM  194 (491)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            46888999999999999987 788888888899999877787777777653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=95.51  E-value=0.022  Score=61.91  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|+|||--. +|...+..+...+..+. +++.+++-+.+
T Consensus       475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHR  523 (567)
T COG1132         475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHR  523 (567)
T ss_pred             HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEecc
Confidence            57999999999999999987 67777666777777666 44444444444

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=95.51  E-value=0.13  Score=55.06  Aligned_cols=50  Identities=20%  Similarity=0.336  Sum_probs=42.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus       413 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~  463 (500)
T TIGR02633       413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL  463 (500)
T ss_pred             HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            47888999999999999987 788888889999999988887787777653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.50  E-value=0.11  Score=49.38  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             HHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEE
Q psy318          173 VANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVA  216 (438)
Q Consensus       173 va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~  216 (438)
                      +|+.++-+..+|++||--. +|.+.-..+-.|++.-.++|..+|.
T Consensus       163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG  207 (235)
T COG4778         163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG  207 (235)
T ss_pred             hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence            6899999999999999876 5666666677889998899987764

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=95.49  E-value=0.029  Score=59.03  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=34.8

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHH----------HHCCCEEEEecCCChhhh
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTEL----------FQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l----------~~~g~~lV~TSN~~P~~L  225 (438)
                      +--.|++||++......+..|+++++..          ....+.+|+++|-.+.+.
T Consensus       173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~  228 (403)
T COG1221         173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEA  228 (403)
T ss_pred             CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHH
Confidence            4568999999999988888888888873          233467888888765443

>PRK13409 putative ATPase RIL; Provisional

Probab=95.48  E-value=0.17  Score=55.90  Aligned_cols=49  Identities=10%  Similarity=0.156  Sum_probs=40.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+..+ |..+|++|.-
T Consensus       463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD  513 (590)
T PRK13409        463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD  513 (590)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46888999999999999987 7988888899999998764 6666666554

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=95.47  E-value=0.082  Score=63.78  Aligned_cols=55  Identities=18%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY  226 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~  226 (438)
                      .+|..++.++++||+||--. +|...+..+.+++..+.+ .|..+|+|+..++.++.
T Consensus       219 sIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~  275 (1394)
T TIGR00956       219 SIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY  275 (1394)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Confidence            57899999999999999998 788888888899999876 47788888877655554

>KOG0735|consensus

Probab=95.47  E-value=0.11  Score=58.16  Aligned_cols=29  Identities=24%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...+..+||+||.|+|||-|+.++++.+.
T Consensus       428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~  456 (952)
T KOG0735|consen  428 VFRHGNILLNGPKGSGKTNLVKALFDYYS  456 (952)
T ss_pred             ccccccEEEeCCCCCCHhHHHHHHHHHhc
Confidence            34467899999999999999999999986

>TIGR00368 Mg chelatase-related protein

Probab=95.46  E-value=0.033  Score=60.24  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=32.5

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHH------------HHCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTEL------------FQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l------------~~~g~~lV~TSN~~P~~L~~  227 (438)
                      .--+|||||+...+...+..|.+.++.-            +.....+|+|+|.-|-..+.
T Consensus       295 ~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~  354 (499)
T TIGR00368       295 HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYG  354 (499)
T ss_pred             CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCC
Confidence            4579999999988766655565555321            11235789999987755553

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.45  E-value=0.0096  Score=53.42  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      |+|+|+||+|||.|+.++..++... -.|+.|.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~-f~RIq~t   33 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLS-FKRIQFT   33 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT---EEEEE--
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCc-eeEEEec
Confidence            7999999999999999999988644 4678875

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=95.45  E-value=0.013  Score=60.41  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|++|.|++|+|||+|+.++...++
T Consensus        25 ~g~vli~G~~G~gKttl~r~~~~~~~   50 (337)
T TIGR02030        25 IGGVMVMGDRGTGKSTAVRALAALLP   50 (337)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence            46899999999999999999988775

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=95.45  E-value=0.2  Score=62.32  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER  144 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (438)
                      .+=..|.|++|+|||.+|..+...+.. ...+|+--.--....++|.+.-+..+                    ..-+.|
T Consensus       446 ~~v~ii~G~aGTGKTt~l~~l~~~~~~-~G~~V~~lAPTgrAA~~L~e~~g~~A--------------------~Ti~~~  504 (1960)
T TIGR02760       446 KRFIIINGFGGTGSTEIAQLLLHLASE-QGYEIQIITAGSLSAQELRQKIPRLA--------------------STFITW  504 (1960)
T ss_pred             CCeEEEEECCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHhcchh--------------------hhHHHH
Confidence            356889999999999999999887753 35677765544444444443211100                    000011


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCchHHH--HHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          145 EREREREREREREREREREAKSYDPIPPVA--NDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va--~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +++-.          ++   ...+.+....  ..-+...++|++||...++..+   +..|+...-..|..||+-++.
T Consensus       505 l~~l~----------~~---~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~---~~~Ll~~a~~~garvVlvGD~  566 (1960)
T TIGR02760       505 VKNLF----------ND---DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNE---LLKLIDKAEQHNSKLILLNDS  566 (1960)
T ss_pred             HHhhc----------cc---ccchhHHHhhcccCCCCCCCEEEEECCCCCCHHH---HHHHHHHHhhcCCEEEEEcCh
Confidence            11000          00   0000000000  0012468999999999997554   556677776778878776553

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=95.43  E-value=0.073  Score=59.37  Aligned_cols=49  Identities=20%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|+++
T Consensus       603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~  652 (694)
T TIGR01846       603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRL  652 (694)
T ss_pred             HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCCh
Confidence            47899999999999999987 68777777777777764 566777777764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional

Probab=95.42  E-value=0.15  Score=62.36  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ..+||++||..+++..+   +..|+...-..|..+|+-++.  .+|.+
T Consensus      1062 ~~~llIVDEaSMv~~~~---m~~Ll~~~~~~garvVLVGD~--~QL~s 1104 (1747)
T PRK13709       1062 SNTLFLLDESSMVGNTD---MARAYALIAAGGGRAVSSGDT--DQLQA 1104 (1747)
T ss_pred             CCcEEEEEccccccHHH---HHHHHHhhhcCCCEEEEecch--HhcCC
Confidence            46999999999998655   344555554567788888764  45544

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.41  E-value=0.35  Score=49.36  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|...+..+.+++..+.+. |..+|++|..
T Consensus       164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd  214 (327)
T PRK11308        164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD  214 (327)
T ss_pred             HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            47889999999999999987 7888777888888888764 7766666654

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.41  E-value=0.16  Score=48.44  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             cCCeEEEecCCCC-----Chh-hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVT-----DIA-DAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~-----d~~-da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .++++++|-+...     +.. ....+..+++.+.+.|+.+|+|++..
T Consensus       107 ~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~  154 (224)
T TIGR03880       107 GASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD  154 (224)
T ss_pred             CCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence            5789999987754     212 12357788888888999899988754

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF13245 AAA_19: Part of AAA domain

Probab=95.37  E-value=0.035  Score=44.90  Aligned_cols=45  Identities=22%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             CceE-EEccCCCCHh-HHHHHHHHhhhc--ccceeeechhhhHHHHHHH
Q psy318           66 KGLY-IYGAVGGGKT-MLMDIFYESCET--KQKQRVHFNKFMLDVHAKI  110 (438)
Q Consensus        66 kGly-L~G~vG~GKT-~Lmd~f~~~l~~--~~k~R~Hf~~fm~~v~~~l  110 (438)
                      .+++ |.||||+||| .+++++...+..  ....|+-+-.|-...-+.|
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l   58 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADEL   58 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHH
Confidence            3445 5999999999 556666555421  1156777766654444433

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.34  E-value=0.016  Score=51.95  Aligned_cols=27  Identities=15%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .++.++|+|++|||||.++..+...+.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998874

>PRK13409 putative ATPase RIL; Provisional

Probab=95.34  E-value=0.23  Score=54.78  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|..++.++++|+|||--. +|+.....+.+++..+.+ |..+|++|...
T Consensus       222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~  271 (590)
T PRK13409        222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL  271 (590)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46888999999999999887 788888889999999887 87777777653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.31  E-value=0.04  Score=56.14  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=37.4

Q ss_pred             HHHHHHhhcCCeEEEecCC-CCChhhHHHHHHHHHHHHHC-CCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQ-VTDIADAMILKRLFTELFQL-GVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~-v~d~~da~iL~~Lfn~l~~~-g~~lV~TSN  219 (438)
                      ++|+.++.++.+|++||-. .+|...-..|.+.+..+.++ |+.+|+.|.
T Consensus       147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH  196 (345)
T COG1118         147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH  196 (345)
T ss_pred             HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence            4688999999999999955 57877767788888888776 776666554

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=95.31  E-value=0.16  Score=49.11  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=19.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .+-+.|+||.|+|||.|+..+..
T Consensus        30 ~~~~~l~G~n~~GKstll~~i~~   52 (222)
T cd03285          30 SRFLIITGPNMGGKSTYIRQIGV   52 (222)
T ss_pred             CeEEEEECCCCCChHHHHHHHHH
Confidence            45589999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.31  E-value=0.13  Score=49.18  Aligned_cols=37  Identities=24%  Similarity=0.149  Sum_probs=25.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .=+.|.|+||+|||.++--+...+......++-|-.+
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            4477899999999999887766554443455555443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=95.30  E-value=0.04  Score=58.16  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcCC
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~g  229 (438)
                      --.|+|||++.+....+..|.++++.--  .        ..+.+|+|||..+.++-..|
T Consensus       233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~  291 (469)
T PRK10923        233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG  291 (469)
T ss_pred             CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence            3478999999999887777777665321  0        12379999999887665544

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.30  E-value=0.2  Score=51.04  Aligned_cols=49  Identities=22%  Similarity=0.207  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|...+..+.+++..+.+ .|..+|+.|..
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd  213 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD  213 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            36888999999999999987 788888888899999876 47666666655

>PTZ00424 helicase 45; Provisional

Probab=95.29  E-value=0.21  Score=51.34  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             hhcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      +...++|++||.|.. +......+..++..+. ...++|+.|...|.++.
T Consensus       168 l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~  216 (401)
T PTZ00424        168 VDDLKLFILDEADEMLSRGFKGQIYDVFKKLP-PDVQVALFSATMPNEIL  216 (401)
T ss_pred             cccccEEEEecHHHHHhcchHHHHHHHHhhCC-CCcEEEEEEecCCHHHH
Confidence            567899999999974 2222223444454442 34567777777776543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.28  E-value=0.18  Score=50.81  Aligned_cols=48  Identities=21%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... ..+|++|..
T Consensus       210 ~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~  258 (305)
T PRK14264        210 CIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHN  258 (305)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcC
Confidence            47899999999999999987 6888777888888888664 556666654

>PLN03210 Resistant to P

Probab=95.28  E-value=0.064  Score=63.42  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVH   98 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H   98 (438)
                      ..++-+-|||+.|.|||+||.++|+.+...-...++
T Consensus       205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf  240 (1153)
T PLN03210        205 EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF  240 (1153)
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE
Confidence            345679999999999999999999987543333333

syringae 6; Provisional

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.27  E-value=0.016  Score=49.24  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+++..+.+.+.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999988763

...

>PF00488 MutS_V: MutS domain V C-terminus

Probab=95.26  E-value=0.29  Score=47.78  Aligned_cols=43  Identities=19%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             hcCCeEEEecCCC-CChhhH-HHHHHHHHHHHH-CCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADA-MILKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+-.|+++|||.. ++..+. .+...+++.|.+ .+..+++|++..
T Consensus       121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~  166 (235)
T PF00488_consen  121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH  166 (235)
T ss_dssp             -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred             ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence            4567999999998 454443 356667888888 488888888885

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=95.24  E-value=0.22  Score=48.65  Aligned_cols=49  Identities=24%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+. .+..+|++|...
T Consensus       166 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~  215 (257)
T cd03288         166 CLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV  215 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh
Confidence            46888999999999999987 68777777888887764 467777777664

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=95.22  E-value=0.19  Score=55.92  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||-.. +|......+.++++.+.+.|..+|++|...
T Consensus       154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~  204 (648)
T PRK10535        154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP  204 (648)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence            46888999999999999887 788888889999999877787777777764

>PRK13764 ATPase; Provisional

Probab=95.21  E-value=0.055  Score=59.77  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceee
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV   97 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~   97 (438)
                      ..+|+++.|++|+|||+++.++.+.++. ..+.+
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~-~~riV  288 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYAD-MGKIV  288 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhh-CCCEE
Confidence            3589999999999999999999988863 33444

>KOG0056|consensus

Probab=95.20  E-value=0.32  Score=52.68  Aligned_cols=151  Identities=14%  Similarity=0.209  Sum_probs=79.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccc-eeeechhhhHHHHHHHHHHHHHhhh-cccCC-CC--------CCCCC
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQK-QRVHFNKFMLDVHAKIHEVKKILAR-DKAKS-YD--------PGVPN  131 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k-~R~Hf~~fm~~v~~~l~~~~~~~~~-~~~~~-~~--------~~~~~  131 (438)
                      .+.|-+-|.||.|.|||.+|.+++.-..+... .++-=.. +..+  .++.++++-+- |.+.. |-        .+-|+
T Consensus       562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd-Irnv--t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~  638 (790)
T KOG0056|consen  562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD-IRNV--TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS  638 (790)
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch-HHHH--HHHHHHHhcCcccCcceeecceeeeheeecCCC
Confidence            45688999999999999999998765533211 1111111 1111  12333333211 11100 00        11111


Q ss_pred             ccc-cchHHHHHHHHHHH---HHHHHHHHHHHHhhhc--cCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHH
Q psy318          132 RLD-VMKEEEEKERERER---EREREREREREREREA--KSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLF  204 (438)
Q Consensus       132 ~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~--~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lf  204 (438)
                      --+ ..-...+...-+.+   +++.|.-+-++||-+-  +++. --++|+.+++.+.++++||--. +|-..+..+-.-+
T Consensus       639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ-RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL  717 (790)
T KOG0056|consen  639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ-RVAIARTILKAPSIILLDEATSALDTNTERAIQAAL  717 (790)
T ss_pred             CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh-hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence            100 00011222233333   5666666667777421  2222 2467899999999999999876 5555555566667


Q ss_pred             HHHHHCCCEEEEe
Q psy318          205 TELFQLGVVVVAT  217 (438)
Q Consensus       205 n~l~~~g~~lV~T  217 (438)
                      +++......+|++
T Consensus       718 ~rlca~RTtIVvA  730 (790)
T KOG0056|consen  718 ARLCANRTTIVVA  730 (790)
T ss_pred             HHHhcCCceEEEe
Confidence            7777665555554

>PLN03232 ABC transporter C family member; Provisional

Probab=95.18  E-value=0.074  Score=64.56  Aligned_cols=49  Identities=18%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++++|||.-. +|...+. ++.+++..+. .++.+|+.|++.
T Consensus       750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~  800 (1495)
T PLN03232        750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQL  800 (1495)
T ss_pred             HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECCh
Confidence            47999999999999999987 6765444 4556666544 455556666653

>PRK09862 putative ATP-dependent protease; Provisional

Probab=95.17  E-value=0.043  Score=59.47  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ....+.|.|++|+|||||+..+..-++
T Consensus       209 ~G~~llliG~~GsGKTtLak~L~gllp  235 (506)
T PRK09862        209 GGHNLLLIGPPGTGKTMLASRINGLLP  235 (506)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccCC
Confidence            345699999999999999999977664

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=95.17  E-value=0.032  Score=62.55  Aligned_cols=47  Identities=17%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.+++++++|++||.-. +|...+..+..   .....+..+|+.|.+.
T Consensus       627 alARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl  674 (711)
T TIGR00958       627 AIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRL  674 (711)
T ss_pred             HHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccH
Confidence            47899999999999999987 67766655555   2223556666777663

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.16  E-value=0.017  Score=61.28  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ...|++++|+||+|+|||+|+.++...+..
T Consensus        44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~   73 (441)
T TIGR00390        44 EVTPKNILMIGPTGVGKTEIARRLAKLANA   73 (441)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346799999999999999999999888743

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.13  E-value=0.017  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +++.|++|+|||++++.+...+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68999999999999999987664

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.11  E-value=0.12  Score=58.59  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+=++|.||.|.|||.|+.-|....
T Consensus        32 ~~~~~v~apaG~GKTtl~~~~~~~~   56 (903)
T PRK04841         32 YRLVLVTSPAGYGKTTLISQWAAGK   56 (903)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhC
Confidence            3558999999999999999998644

>PRK04328 hypothetical protein; Provisional

Probab=95.10  E-value=0.27  Score=48.17  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=29.6

Q ss_pred             cCCeEEEecCCCC---ChhhH-HHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVT---DIADA-MILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~---d~~da-~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ++++++||=+...   +.... ..+..|.+.+...|+.+++|+..+
T Consensus       128 ~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~  173 (249)
T PRK04328        128 GAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVS  173 (249)
T ss_pred             CCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            6799999987643   22211 346667777888999999997654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=95.09  E-value=0.35  Score=54.01  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++.   +.|..+|+.|.+.
T Consensus       592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~---~~~~tvI~isH~~  639 (659)
T TIGR00954       592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR---EFGITLFSVSHRK  639 (659)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH---HcCCEEEEEeCch
Confidence            47899999999999999987 67766665555554   3477777777764

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.012  Score=62.72  Aligned_cols=28  Identities=29%  Similarity=0.314  Sum_probs=23.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-.+||+++||||||||||+.-+-.-+|
T Consensus       196 AGgHnLl~~GpPGtGKTmla~Rl~~lLP  223 (490)
T COG0606         196 AGGHNLLLVGPPGTGKTMLASRLPGLLP  223 (490)
T ss_pred             hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence            3468999999999999999988866664

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=95.05  E-value=0.091  Score=51.49  Aligned_cols=48  Identities=17%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEE
Q psy318          169 PIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVA  216 (438)
Q Consensus       169 ~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~  216 (438)
                      -+-.+|+.++.++.+|++||--. +.+.=...++..+..+.+. |..|++
T Consensus       143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL  192 (237)
T COG0410         143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL  192 (237)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence            35678999999999999999876 4444445578888888866 534444

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.00  E-value=0.18  Score=55.11  Aligned_cols=49  Identities=20%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             hhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          178 ISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      +.+.++|+||..+......  ...|..| .........+|+.++..+.+|..
T Consensus       426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~Dl~e  476 (559)
T PRK12727        426 LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSDLDE  476 (559)
T ss_pred             hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhHHHH
Confidence            3579999999999853221  1223322 22223345788888888877763

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.00  E-value=0.021  Score=48.30  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      |+|.|++|+|||.|+..+...+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998766

...

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.068  Score=57.72  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             EEccCCCCHhHHHHHHHHhhhc------------------------------------------------cccee---ee
Q psy318           70 IYGAVGGGKTMLMDIFYESCET------------------------------------------------KQKQR---VH   98 (438)
Q Consensus        70 L~G~vG~GKT~Lmd~f~~~l~~------------------------------------------------~~k~R---~H   98 (438)
                      |-|..|.|||+||..+.-..+.                                                ...++   +.
T Consensus        39 L~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id  118 (500)
T COG1129          39 LLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID  118 (500)
T ss_pred             EecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccC


Q ss_pred             chhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh
Q psy318           99 FNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDII  178 (438)
Q Consensus        99 f~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~  178 (438)
                      +...-....+.|.++..... +....                                    +.-+....-+-++|+.+.
T Consensus       119 ~~~m~~~A~~~l~~lg~~~~-~~~~v------------------------------------~~LsiaqrQ~VeIArAl~  161 (500)
T COG1129         119 RKAMRRRARELLARLGLDID-PDTLV------------------------------------GDLSIAQRQMVEIARALS  161 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCCC-hhhhh------------------------------------hhCCHHHHHHHHHHHHHh


Q ss_pred             hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .++++|++||--. ++..+...||.++..|.++|+.+|+-|.+
T Consensus       162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr  204 (500)
T COG1129         162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR  204 (500)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=94.98  E-value=0.22  Score=53.75  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus       166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  216 (529)
T PRK15134        166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN  216 (529)
T ss_pred             HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence            47899999999999999987 7988888899999988764 6666666655

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.97  E-value=0.25  Score=51.91  Aligned_cols=48  Identities=17%  Similarity=0.090  Sum_probs=31.1

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHC----CCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQL----GVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~----g~~lV~TSN~~P~~L~  226 (438)
                      +..++++++|+.+... .+.+.|..+-..+-..    .+.+|+.++..+.++.
T Consensus       252 ~~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~  303 (388)
T PRK12723        252 SKDFDLVLVDTIGKSP-KDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK  303 (388)
T ss_pred             hCCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence            3689999999999864 2333333433333221    3568888888877776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 1e-13
 Identities = 69/478 (14%), Positives = 149/478 (31%), Gaps = 108/478 (22%)

Query: 13  KQY---YEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQS---KSMFSFFQDKVKQ-- 64
             Y      +   + Q        ++Q D +Y   + +A  +      +   +  + +  
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 65  P-KGLYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKA 122
           P K + I G +G GKT +     + C   K + ++ F  F L++    +  + +L   + 
Sbjct: 149 PAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204

Query: 123 KSY--DPGVPNRLDVMKEEE-EKERERERERERERERERERE-------REAKSYDPIPP 172
             Y  DP   +R D     +      +   R   + +  E         + AK+++    
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---- 260

Query: 173 VANDIISKTWLICFDEFQVTDIADAMILKRL--------FTELFQLGVVVVATSNRAPDD 224
            A ++  K  L    + QVTD   A     +         T      +++     R P D
Sbjct: 261 -AFNLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQD 317

Query: 225 L------------------YKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEE 266
           L                   ++GL   +    ++  K       L + I+  SL    E 
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-------LTTIIE-SSLN-VLEP 368

Query: 267 SSTKTYFVKNFANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDE 326
           +  +  F    +       +F       +  +   +++++  +V  +     ++    ++
Sbjct: 369 AEYRKMF-DRLS-------VF-----PPSAHIPTILLSLIWFDVIKS-DVMVVV----NK 410

Query: 327 LCSRDLGSSD------YLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRL 380
           L    L           +    +   V + N   L+  +          I   +D++  +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLI 465

Query: 381 VISSDVPLNKLFS------NEAVIDTHSDEHRMLMDDLN-IKA---NDGTDANLKSNI 428
               D      +S                  RM+  D   ++    +D T  N   +I
Sbjct: 466 PPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query: 30 QEQIVKQLDNVYVSIKNYAPQS 51
          ++Q +K+L     S+K YA  S
Sbjct: 18 EKQALKKLQA---SLKLYADDS 36

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 87  ESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLD--VMKEEEEKER 144
           E  E+ +K R    K  L       +V +   R+KAK         L+    ++ E+ E+
Sbjct: 83  EP-ESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKD-------LEEWNQRQSEQVEK 133

Query: 145 EREREREREREREREREREA 164
            +   R  ++   ++ + + 
Sbjct: 134 NKINNRIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAKS 166
            + D + +E E  R+      RE +R+R +E +A S
Sbjct: 75  AQADRLTQEPESIRKW-----REEQRKRLQELDAAS 105

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 128 GVPNRL----DVMKE--EEEKEREREREREREREREREREREAKSYD 168
              +RL    + +++  EE+++R +E +   +   +  RE+  K  +
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.71
2qgz_A	308	Helicase loader, putative primosome component; str	99.7
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.66
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.28
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.27
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.24
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.18
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.17
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.16
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.13
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.01
3bos_A	242	Putative DNA replication factor; P-loop containing	98.98
3co5_A	143	Putative two-component system transcriptional RES	98.97
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.9
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.89
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.86
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.82
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.79
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.79
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.76
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.75
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.74
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.72
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.69
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.63
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.58
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.58
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.55
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.54
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.53
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.51
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.5
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.47
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.46
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.46
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.46
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.43
3pvs_A	447	Replication-associated recombination protein A; ma	98.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.4
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.38
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.38
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.36
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.34
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.33
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.33
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.32
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.3
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.3
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.28
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	98.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.22
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.2
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.15
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.15
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.15
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.14
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.12
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.09
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.06
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.04
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.03
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.03
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.97
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.92
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.88
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.87
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.87
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.87
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.86
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.82
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.82
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.81
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.81
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.8
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.76
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.76
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.72
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.68
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.67
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.66
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.66
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.6
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.57
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.49
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.41
2fna_A	357	Conserved hypothetical protein; structural genomic	97.39
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.31
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.28
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.27
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.26
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.23
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.23
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.21
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.19
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.18
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.16
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.12
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.03
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.01
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	96.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.95
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.95
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.9
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.81
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.8
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.76
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.73
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.72
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	96.71
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.67
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.66
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.66
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.65
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.63
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.56
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.5
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.49
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.42
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.42
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.41
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.41
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.33
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.3
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.26
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.25
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.23
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.2
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.19
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.18
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.17
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.12
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.1
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.1
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	96.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.03
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	95.99
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.96
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	95.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.93
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.91
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.89
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.86
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.83
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.83
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	95.82
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.81
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.81
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	95.78
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.78
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	95.77
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.76
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.73
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.66
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.61
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	95.57
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	95.54
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.53
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.52
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.51
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.49
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.45
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.45
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.42
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.34
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.18
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.18
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	95.14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.12
3bor_A	237	Human initiation factor 4A-II; translation initiat	95.1
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.02
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.96
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.9
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	94.79
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.76
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.74
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.72
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	94.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.63
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.61
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.61
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	94.58
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.55
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.51
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.49
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.39
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.38
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	94.28
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.28
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.23
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.03
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	94.01
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	93.98
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	93.96
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	93.89
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.75
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	93.75
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.71
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.7
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	93.62
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.62
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.58
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	93.57
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.49
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.46
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	93.42
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.4
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.35
1yks_A	440	Genome polyprotein [contains: flavivirin protease	93.31
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.31
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.31
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.3
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.29
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.28
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.27
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.22
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.06
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.05
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.04
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.03
1via_A	175	Shikimate kinase; structural genomics, transferase	93.01
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	93.01
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.99
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	92.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	92.95
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	92.9
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.9
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.89
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	92.89
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.85
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	92.83
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	92.79
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.78
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.75
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	92.74
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	92.73
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.67
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.67
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	92.57
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.56
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	92.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.55
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	92.52
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	92.5
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	92.43
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	92.42
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.4
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.31
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.24
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	92.24
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.23
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.18
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	92.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.14
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	92.12
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	92.12
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	92.1
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.99
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.98
3b6e_A	216	Interferon-induced helicase C domain-containing P;	91.94
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	91.91
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	91.84
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.8
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.79
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	91.79
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	91.74
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	91.72
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	91.66
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	91.59
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.58
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	91.57
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	91.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	91.48
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	91.4
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.28
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	91.26
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.17
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	91.14
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	91.01
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	91.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	90.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	90.97
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	90.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	90.88
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	90.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	90.86
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.85
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	90.74
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	90.69
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	90.57
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	90.55
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.42
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	90.1
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.01
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	90.0
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	89.95
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	89.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	89.66
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	89.6
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.44
2wv9_A	673	Flavivirin protease NS2B regulatory subunit, FLAV	89.44
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	89.44
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	89.37
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	89.34
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	89.28
2ged_A	193	SR-beta, signal recognition particle receptor beta	89.13
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	89.05
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.04
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	88.9
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	88.89
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	88.85
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	88.79
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	88.61
1p9r_A	418	General secretion pathway protein E; bacterial typ	88.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.47
1ji0_A	240	ABC transporter; ATP binding protein, structural g	88.46
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.44
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	88.4
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	88.36
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	88.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	88.34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	88.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	88.18
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	88.15
1g6h_A	257	High-affinity branched-chain amino acid transport	88.13
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	88.1
4ddu_A	1104	Reverse gyrase; topoisomerase, DNA supercoiling, a	88.1
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	87.89
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	87.88
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	87.88
1b0u_A	262	Histidine permease; ABC transporter, transport pro	87.84
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	87.82
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	87.82
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	87.8
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	87.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	87.76
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	87.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	87.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	87.64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	87.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	87.59
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	87.58
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	87.56
1g6h_A	257	High-affinity branched-chain amino acid transport	87.55
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	87.5
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	87.47
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	87.42
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	87.41
1gm5_A	780	RECG; helicase, replication restart; HET: DNA ADP;	87.36
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	87.28
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	87.26
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	87.24
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	87.18
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	87.13
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	87.13
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	87.08
2wji_A	165	Ferrous iron transport protein B homolog; membrane	87.08
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	87.08
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	87.06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	87.04
2ghi_A	260	Transport protein; multidrug resistance protein, M	87.03
1e69_A	322	Chromosome segregation SMC protein; structural mai	86.95
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	86.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	86.89
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	86.88
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	86.85
1nrj_B	218	SR-beta, signal recognition particle receptor beta	86.81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	86.8
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	86.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	86.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	86.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	86.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	86.63
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	86.57
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	86.54
3h1t_A	590	Type I site-specific restriction-modification syst	86.49
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	86.32
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	86.31
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	86.29
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	86.27
1b0u_A	262	Histidine permease; ABC transporter, transport pro	86.27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	86.26
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	86.21
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	86.2
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	86.18
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	86.17
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	86.08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	86.07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	86.07
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	86.03
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	86.02
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	85.97
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	85.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	85.82
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	85.81
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	85.8
1ji0_A	240	ABC transporter; ATP binding protein, structural g	85.79
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	85.71
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	85.64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	85.56
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	85.55
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	85.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	85.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	85.51
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	85.5
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	85.5
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	85.44
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	85.37
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	85.36
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	85.33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	85.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	85.23
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	85.18
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	85.1
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	85.05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	85.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	84.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	84.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	84.81
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	84.73
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	84.66
2zpa_A	671	Uncharacterized protein YPFI; RNA modification enz	84.56
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	84.54
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	84.49
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	84.48
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	84.33
1uaa_A	673	REP helicase, protein (ATP-dependent DNA helicase	84.32
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	84.31
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	84.26
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	84.22
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	84.17
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	84.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	84.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	84.06
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	84.03
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	83.94
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	83.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	83.9
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	83.79
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	83.77
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	83.75
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	83.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	83.66
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	83.6
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	83.59
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	83.58
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	83.55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	83.53
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	83.51
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	83.46
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	83.46
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	83.45
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	83.38
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	83.29
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	83.29
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	83.28
1pjr_A	724	PCRA; DNA repair, DNA replication, SOS response, h	83.28
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	83.27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	83.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	83.13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	83.12
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	83.11
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	83.1
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	83.01
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	82.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	82.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	82.86
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	82.85
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	82.85
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	82.82
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	82.8
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	82.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	82.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	82.67

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.71  E-value=4.5e-17  Score=149.19  Aligned_cols=159  Identities=14%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceee---echhhh
Q psy318           27 DKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV---HFNKFM  103 (438)
Q Consensus        27 D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~---Hf~~fm  103 (438)
                      ++.|..++..+..+...   +.            ....++++||||++|+|||+|+.++++.+... ..++   +...++
T Consensus        31 ~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~~~~   94 (202)
T 2w58_A           31 DDGRIKAIRFAERFVAE---YE------------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVPELF   94 (202)
T ss_dssp             SHHHHHHHHHHHHHHHH---CC------------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHHHHH
T ss_pred             ChhHHHHHHHHHHHHHH---hh------------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhHHHH
Confidence            55777777776665442   10            01124899999999999999999999988533 2333   334333


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCe
Q psy318          104 LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWL  183 (438)
Q Consensus       104 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~l  183 (438)
                      ..+...+   .                                                    .+.+..+. ..+.++++
T Consensus        95 ~~~~~~~---~----------------------------------------------------~~~~~~~~-~~~~~~~~  118 (202)
T 2w58_A           95 RELKHSL---Q----------------------------------------------------DQTMNEKL-DYIKKVPV  118 (202)
T ss_dssp             HHHHHC----------------------------------------------------------CCCHHHH-HHHHHSSE
T ss_pred             HHHHHHh---c----------------------------------------------------cchHHHHH-HHhcCCCE
Confidence            3322110   0                                                    00112222 23456789


Q ss_pred             EEEecCCCCCh---hhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC-------CCcCCcccHHHHHHhhcccccccc
Q psy318          184 ICFDEFQVTDI---ADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG-------LQRSNFLPFIDVLKTYCDVASLNS  253 (438)
Q Consensus       184 Lc~DEf~v~d~---~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g-------l~r~~F~p~I~~L~~~~~vv~ld~  253 (438)
                      |||||++....   ..+.++..+++..+..+..+|+|||.+|.+|...-       .+.....++++||.++|.++.++ 
T Consensus       119 lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~~~~-  197 (202)
T 2w58_A          119 LMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPIEIT-  197 (202)
T ss_dssp             EEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEEECC-
T ss_pred             EEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEEeec-
Confidence            99999987532   22335667888888888899999999999998731       23445788999999999999999 


Q ss_pred             ccchh
Q psy318          254 NIDYR  258 (438)
Q Consensus       254 g~DyR  258 (438)
                      |.|||
T Consensus       198 g~~~R  202 (202)
T 2w58_A          198 GPNRR  202 (202)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            89998

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.70  E-value=2.7e-17  Score=163.06  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=94.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhccccee---eechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQR---VHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE  141 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R---~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (438)
                      +++||||||+|+|||||+.++++.+...++.+   +++.+|+.++...+.     .                        
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~-----~------------------------  202 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAIS-----N------------------------  202 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC------------------------------
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhc-----c------------------------
Confidence            58999999999999999999999886122333   455555444321100     0                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChh---hHHHHHHHHHHHHHCCCEEEEec
Q psy318          142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA---DAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~---da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                         +   .....    . ..+.++++|||||++.....   .+.+|+.+++.++..++++|+||
T Consensus       203 -------------------~---~~~~~----~-~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitS  255 (308)
T 2qgz_A          203 -------------------G---SVKEE----I-DAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTS  255 (308)
T ss_dssp             -------------------------CCT----T-HHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEE
T ss_pred             -------------------c---hHHHH----H-HHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence                               0   00011    1 22457899999999875432   22356679999887778999999


Q ss_pred             CCChhhhhcC------CCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318          219 NRAPDDLYKN------GLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA  262 (438)
Q Consensus       219 N~~P~~L~~~------gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~  262 (438)
                      |.+|.+|...      |.+.....++++||.++|.++.++ |.+||+.+-
T Consensus       256 N~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~l~-g~s~R~~~~  304 (308)
T 2qgz_A          256 NYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLE-GANRRLEHH  304 (308)
T ss_dssp             SSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEECC-SCCCC----
T ss_pred             CCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEEec-CCccccccc
Confidence            9999999874      234456778999999999999999 899998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.66  E-value=2.7e-16  Score=141.95  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=105.2

Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH
Q psy318           27 DKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV  106 (438)
Q Consensus        27 D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v  106 (438)
                      ++.|.+++..+..+.+.+.                ...+++++|+||+|+|||+|+.+++..+......++.|.... ++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~----------------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~-~~   78 (180)
T 3ec2_A           16 NVSQNRALLTIRVFVHNFN----------------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK-DL   78 (180)
T ss_dssp             SHHHHHHHHHHHHHHHSCC----------------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH-HH
T ss_pred             CHHHHHHHHHHHHHHHhcc----------------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH-HH
Confidence            7889999998888765431                233689999999999999999999998853333344443321 11


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEE
Q psy318          107 HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICF  186 (438)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~  186 (438)
                      .+.+.......                                                ..   .. ..+.+.++++|+|
T Consensus        79 ~~~~~~~~~~~------------------------------------------------~~---~~-~~~~~~~~~llil  106 (180)
T 3ec2_A           79 IFRLKHLMDEG------------------------------------------------KD---TK-FLKTVLNSPVLVL  106 (180)
T ss_dssp             HHHHHHHHHHT------------------------------------------------CC---SH-HHHHHHTCSEEEE
T ss_pred             HHHHHHHhcCc------------------------------------------------hH---HH-HHHHhcCCCEEEE
Confidence            11111111100                                                00   11 2333568999999


Q ss_pred             ecCCC--CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC------CCcCCcccHHHHHHhhcccccc
Q psy318          187 DEFQV--TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG------LQRSNFLPFIDVLKTYCDVASL  251 (438)
Q Consensus       187 DEf~v--~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g------l~r~~F~p~I~~L~~~~~vv~l  251 (438)
                      ||++.  .+......|+.+++.+.+.|+.+|+|||.+|++|++++      +....-.+++++|..+|++|.+
T Consensus       107 DE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~  179 (180)
T 3ec2_A          107 DDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLVI  179 (180)
T ss_dssp             ETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred             eCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence            99994  56666678999999999999999999999999976522      2211225678999999999876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=2.9e-11  Score=124.63  Aligned_cols=141  Identities=23%  Similarity=0.336  Sum_probs=94.9

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..++|+|++||||||||||+|+.++++.+..+ -.++...+++    .+--+.+++                        
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~sk~vGese~~vr~------------------------  232 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-FIRVSGAELVQKYIGEGSRMVRE------------------------  232 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-EEEEEGGGGSCSSTTHHHHHHHH------------------------
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-ceEEEhHHhhccccchHHHHHHH------------------------
Confidence            45678999999999999999999999988532 2233333322    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn  205 (438)
                                                       +...|++  ..+++|+|||++.+.        .++   ...+..|++
T Consensus       233 ---------------------------------lF~~Ar~--~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~  277 (405)
T 4b4t_J          233 ---------------------------------LFVMARE--HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN  277 (405)
T ss_dssp             ---------------------------------HHHHHHH--TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHH--hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence                                             1122333  468999999999752        111   234666666


Q ss_pred             HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-    ..++.||+|+|+|    |+-+.++++++..+.|      ..++|+.++.-+.+..+.|+....
T Consensus       278 ~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA  347 (405)
T 4b4t_J          278 QLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA  347 (405)
T ss_dssp             HHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH
T ss_pred             hhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence            664    2345788999995    6667778999887765      467888888888888788887654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.27  E-value=8e-12  Score=111.19  Aligned_cols=96  Identities=15%  Similarity=0.242  Sum_probs=73.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      ..+.++|+|++|+|||+|+.++...+... +.++.|-... ++                                     
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~-~~-------------------------------------   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAA-SM-------------------------------------   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETT-TS-------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHH-Hh-------------------------------------
Confidence            45789999999999999999999887532 3333332110 00                                     


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCE-EEEecCCCh
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVV-VVATSNRAP  222 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~-lV~TSN~~P  222 (438)
                                             .+.      .++.++++|||||++..+...+..|+.+++.+.+.|.. +|+|||.+|
T Consensus        76 -----------------------~~~------~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p  126 (149)
T 2kjq_A           76 -----------------------PLT------DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP  126 (149)
T ss_dssp             -----------------------CCC------GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred             -----------------------hHH------HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence                                   000      23457899999999998876688899999999999886 999999999


Q ss_pred             hhhhc
Q psy318          223 DDLYK  227 (438)
Q Consensus       223 ~~L~~  227 (438)
                      .+|..
T Consensus       127 ~~l~~  131 (149)
T 2kjq_A          127 QQLVI  131 (149)
T ss_dssp             TTSSC
T ss_pred             HHccc
Confidence            99863

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.24  E-value=6.8e-11  Score=116.14  Aligned_cols=106  Identities=24%  Similarity=0.358  Sum_probs=73.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceee---echhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV---HFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~---Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      .+++++||||+|+|||+|+.++++.+... ..++   ....|+.++...+   ...                        
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~~~~~~~~~---~~~------------------------   87 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAMVEHL---KKG------------------------   87 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHHHH---HHT------------------------
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHHH---HcC------------------------
Confidence            46789999999999999999999988532 2233   3333332222111   100                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEec
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                                                  .+. .....+.+.++|+|||++....  ..+..++.+++.+.+.|.++|+||
T Consensus        88 ----------------------------~~~-~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~  138 (324)
T 1l8q_A           88 ----------------------------TIN-EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS  138 (324)
T ss_dssp             ----------------------------CHH-HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----------------------------cHH-HHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe
Confidence                                        000 1222345689999999999764  556778999999999999999999


Q ss_pred             CCChhhhh
Q psy318          219 NRAPDDLY  226 (438)
Q Consensus       219 N~~P~~L~  226 (438)
                      |.+|.++.
T Consensus       139 ~~~~~~l~  146 (324)
T 1l8q_A          139 DRHPQKLD  146 (324)
T ss_dssp             SSCGGGCT
T ss_pred             cCChHHHH
Confidence            99998775

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1e-10  Score=121.79  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=90.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..++|+|++||||||||||+|+.++++.+..+ -..+...+++    .+..+.++.                        
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-~~~v~~s~l~sk~~Gese~~ir~------------------------  265 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-FIFSPASGIVDKYIGESARIIRE------------------------  265 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGTCCSSSSHHHHHHHH------------------------
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEehhhhccccchHHHHHHHH------------------------
Confidence            45778999999999999999999999988532 2223322221    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------h---hHHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------A---DAMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~---da~iL~~Lfn  205 (438)
                                                       +...|+.  ..+++|+|||++.+-.        .   -...+..|++
T Consensus       266 ---------------------------------~F~~A~~--~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~  310 (437)
T 4b4t_L          266 ---------------------------------MFAYAKE--HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT  310 (437)
T ss_dssp             ---------------------------------HHHHHHH--SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHh--cCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence                                             1112332  4689999999997421        1   1234566677


Q ss_pred             HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-    ..++.||+|+|+|    |+-+.+++|++..+.|      ..++|+.++.-+.+.+..|+....
T Consensus       311 ~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA  380 (437)
T 4b4t_L          311 QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV  380 (437)
T ss_dssp             HHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH
T ss_pred             HhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence            664    2346899999995    4445556676665554      457888888888888788887654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=7.9e-11  Score=122.25  Aligned_cols=141  Identities=21%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..+.|+|++||||||||||+|+.++++.+..+ -.++...+++    .+..+.++.                        
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-fi~v~~s~l~sk~vGesek~ir~------------------------  266 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-FLRIVGSELIQKYLGDGPRLCRQ------------------------  266 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-EEEEESGGGCCSSSSHHHHHHHH------------------------
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCC-EEEEEHHHhhhccCchHHHHHHH------------------------
Confidence            45778999999999999999999999987532 1223222221    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh-----------hhHHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI-----------ADAMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~-----------~da~iL~~Lfn  205 (438)
                                                       +...|++  ..+++|+|||++.+-.           .....+..|++
T Consensus       267 ---------------------------------lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~  311 (437)
T 4b4t_I          267 ---------------------------------IFKVAGE--NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN  311 (437)
T ss_dssp             ---------------------------------HHHHHHH--TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHh--cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence                                             1122333  4578999999997421           11234566666


Q ss_pred             HHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          206 ELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-.    .++.||+|+|+|    |+-+.++++++..+.+      ..++|+.++.-+.++.+.|+....
T Consensus       312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA  381 (437)
T 4b4t_I          312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV  381 (437)
T ss_dssp             HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH
T ss_pred             HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence            6642    346788999995    5555566777666554      467888888888888778887654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.17  E-value=9.9e-11  Score=121.72  Aligned_cols=141  Identities=22%  Similarity=0.337  Sum_probs=90.2

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..+.|+|++||||||||||+|+.++++.+..+ -..+...+++    .+-.+.++.                        
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~~~~vGese~~ir~------------------------  265 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNAT-FLKLAAPQLVQMYIGEGAKLVRD------------------------  265 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGGCSSCSSHHHHHHHH------------------------
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-EEEEehhhhhhcccchHHHHHHH------------------------
Confidence            45679999999999999999999999987432 1222222221    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----Ch---hh---HHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----DI---AD---AMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----d~---~d---a~iL~~Lfn  205 (438)
                                                       +...|+.  ..+++|+|||++.+     +.   ++   ...+..|++
T Consensus       266 ---------------------------------lF~~A~~--~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~  310 (434)
T 4b4t_M          266 ---------------------------------AFALAKE--KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN  310 (434)
T ss_dssp             ---------------------------------HHHHHHH--HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHh--cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence                                             1122333  46899999999963     11   11   234555666


Q ss_pred             HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-    ..++.||+|+|+|    |+-+.++++++..+.|      ..++|+.++.-+.++.+.|+....
T Consensus       311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA  380 (434)
T 4b4t_M          311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA  380 (434)
T ss_dssp             HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH
T ss_pred             HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence            663    2346788999995    5555567777766655      467888888888888788887654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.7e-10  Score=120.71  Aligned_cols=141  Identities=21%  Similarity=0.315  Sum_probs=92.3

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..++|+|++||||||||||+|+.++++.+..+ -.++...+++    .+-.+.++.                        
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-fi~vs~s~L~sk~vGesek~ir~------------------------  293 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDAT-FIRVIGSELVQKYVGEGARMVRE------------------------  293 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-EEEEEGGGGCCCSSSHHHHHHHH------------------------
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-eEEEEhHHhhcccCCHHHHHHHH------------------------
Confidence            35789999999999999999999999988532 1223322222    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hh---HHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------AD---AMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~d---a~iL~~Lfn  205 (438)
                                                       +...|+.  ..+++|+|||++..-.        ..   ...+..+++
T Consensus       294 ---------------------------------lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~  338 (467)
T 4b4t_H          294 ---------------------------------LFEMART--KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT  338 (467)
T ss_dssp             ---------------------------------HHHHHHH--TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHh--cCCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence                                             1112333  4688999999997521        11   224555666


Q ss_pred             HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318          206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-    ..++.||+|+|+|    |+-+.+++|++..+.+      ..++|+.++.-+.++.+.|+....
T Consensus       339 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA  408 (467)
T 4b4t_H          339 QLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS  408 (467)
T ss_dssp             HHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH
T ss_pred             HhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            664    2345788999995    5666678898887765      467888888888888788887654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.16  E-value=1e-10  Score=121.13  Aligned_cols=106  Identities=27%  Similarity=0.341  Sum_probs=73.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      +++++||||+|+||||||.++++.+... ...++.|   ..|+.++..   .....                        
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~---~~~~~------------------------  182 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD---SMKEG------------------------  182 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH---HHHTT------------------------
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH---HHHcc------------------------
Confidence            6789999999999999999999988422 1223333   333322221   11100                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh-cCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEe
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIIS-KTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVAT  217 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~-~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~T  217 (438)
                                                  .+.. ....+. +.++|+|||++....  ..+..|+.+|+.+.+.|..+|+|
T Consensus       183 ----------------------------~~~~-~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit  233 (440)
T 2z4s_A          183 ----------------------------KLNE-FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC  233 (440)
T ss_dssp             ----------------------------CHHH-HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ----------------------------cHHH-HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE
Confidence                                        0111 223334 789999999998654  45667999999999999999999


Q ss_pred             cCCChhhhh
Q psy318          218 SNRAPDDLY  226 (438)
Q Consensus       218 SN~~P~~L~  226 (438)
                      ||.+|.++.
T Consensus       234 t~~~~~~l~  242 (440)
T 2z4s_A          234 SDREPQKLS  242 (440)
T ss_dssp             ESSCGGGCS
T ss_pred             ECCCHHHHH
Confidence            999998874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.7e-10  Score=119.75  Aligned_cols=141  Identities=28%  Similarity=0.354  Sum_probs=92.1

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM  136 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (438)
                      ..+.|+|++||||||||||+|+.++++.+..+ -.++...+++    .+.-+.++.                        
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-~~~v~~~~l~~~~~Ge~e~~ir~------------------------  256 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-FIRVNGSEFVHKYLGEGPRMVRD------------------------  256 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-EEEEEGGGTCCSSCSHHHHHHHH------------------------
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-eEEEecchhhccccchhHHHHHH------------------------
Confidence            45789999999999999999999999988432 2233333222    111111111                        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----------ChhhHHHHHHHHH
Q psy318          137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----------DIADAMILKRLFT  205 (438)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----------d~~da~iL~~Lfn  205 (438)
                                                       +...|++  ..+++|+|||++..           +......+..|++
T Consensus       257 ---------------------------------lF~~A~~--~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~  301 (428)
T 4b4t_K          257 ---------------------------------VFRLARE--NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT  301 (428)
T ss_dssp             ---------------------------------HHHHHHH--TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred             ---------------------------------HHHHHHH--cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence                                             1122333  45789999999852           1122345677777


Q ss_pred             HHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc-------HHHHHHhhccccccccccchhccc
Q psy318          206 ELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP-------FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       206 ~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-------~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                      .+-.    .++.||+|+|++    |+-+.++++++....|       ...+++.++.-+.+..+.|+....
T Consensus       302 ~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA  372 (428)
T 4b4t_K          302 QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI  372 (428)
T ss_dssp             HHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred             HhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence            7652    356788999985    6677778888776443       456788888888887778887554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.01  E-value=1.9e-09  Score=101.44  Aligned_cols=29  Identities=34%  Similarity=0.562  Sum_probs=26.0

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...++|++||||+|+|||+|+.+++..+.
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999999998774

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.98  E-value=1.2e-09  Score=100.37  Aligned_cols=100  Identities=13%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE  143 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (438)
                      .+++++|+|++|+|||+|+.++...+... ..++.|...-. +.       .                            
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~-~~-------~----------------------------   93 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGI-HA-------S----------------------------   93 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG-GG-------G----------------------------
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH-HH-------H----------------------------
Confidence            45789999999999999999999888533 23344422200 00       0                            


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCE-EEEecCC
Q psy318          144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVV-VVATSNR  220 (438)
Q Consensus       144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~-lV~TSN~  220 (438)
                                               .+..+. +.+.+..+|+|||++......  +..|..+++.+.+.+.. +|+|||.
T Consensus        94 -------------------------~~~~~~-~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A           94 -------------------------ISTALL-EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             -------------------------SCGGGG-TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred             -------------------------HHHHHH-HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence                                     000001 113568999999999876544  67788999999888876 9999999


Q ss_pred             Chhhhh
Q psy318          221 APDDLY  226 (438)
Q Consensus       221 ~P~~L~  226 (438)
                      .|.++.
T Consensus       148 ~~~~~~  153 (242)
T 3bos_A          148 SPMEAG  153 (242)
T ss_dssp             CTTTTT
T ss_pred             CHHHHH
Confidence            887665

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.97  E-value=8e-10  Score=96.73  Aligned_cols=49  Identities=8%  Similarity=-0.060  Sum_probs=38.8

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCC
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGL  230 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl  230 (438)
                      ..+|+|||++......+..|+++++.....++.+|+|||.+|.++ ..|+
T Consensus        76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~~  124 (143)
T 3co5_A           76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSD-GISC  124 (143)
T ss_dssp             TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC---CH
T ss_pred             CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhCc
Confidence            468999999999887777788888876555688999999999888 5443

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.90  E-value=2.1e-09  Score=105.21  Aligned_cols=29  Identities=28%  Similarity=0.516  Sum_probs=26.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||||||||+|+.+++..+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999999999884

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.89  E-value=1e-08  Score=107.71  Aligned_cols=168  Identities=20%  Similarity=0.303  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA  108 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~  108 (438)
                      .|..++.+|..+...+.+  |.   .  +-.-....|+|++|+||+|+|||+|+.++...+..+ -..+...+|+.....
T Consensus        20 G~~~~~~~l~e~v~~l~~--~~---~--~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-f~~is~~~~~~~~~g   91 (476)
T 2ce7_A           20 GAEEAIEELKEVVEFLKD--PS---K--FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-FFHISGSDFVELFVG   91 (476)
T ss_dssp             SCHHHHHHHHHHHHHHHC--TH---H--HHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-EEEEEGGGTTTCCTT
T ss_pred             CcHHHHHHHHHHHHHhhC--hH---H--HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-eeeCCHHHHHHHHhc
Confidence            356677777777665542  10   0  000123568999999999999999999999877432 122222232211000


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318          109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE  188 (438)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE  188 (438)
                             .                      ..        .+        .|.          .+.......+++|+|||
T Consensus        92 -------~----------------------~~--------~~--------~r~----------lf~~A~~~~p~ILfIDE  116 (476)
T 2ce7_A           92 -------V----------------------GA--------AR--------VRD----------LFAQAKAHAPCIVFIDE  116 (476)
T ss_dssp             -------H----------------------HH--------HH--------HHH----------HHHHHHHTCSEEEEEET
T ss_pred             -------c----------------------cH--------HH--------HHH----------HHHHHHhcCCCEEEEec
Confidence                   0                      00        00        000          01222224688999999


Q ss_pred             CCCCCh-----------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHH
Q psy318          189 FQVTDI-----------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLK  243 (438)
Q Consensus       189 f~v~d~-----------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~  243 (438)
                      ++.+..           .....+..|+..+-    ..++.||+|+|++    |.-+.++++++....+      ..++|+
T Consensus       117 id~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~  196 (476)
T 2ce7_A          117 IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILE  196 (476)
T ss_dssp             GGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred             hhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHH
Confidence            987532           11234566666653    2467888999985    3334445565543332      345777


Q ss_pred             hhccccccccccchhc
Q psy318          244 TYCDVASLNSNIDYRS  259 (438)
Q Consensus       244 ~~~~vv~ld~g~DyR~  259 (438)
                      .++..+.+..+.|+..
T Consensus       197 ~~~~~~~l~~~v~l~~  212 (476)
T 2ce7_A          197 IHTRNKPLAEDVNLEI  212 (476)
T ss_dssp             HHHTTSCBCTTCCHHH
T ss_pred             HHHHhCCCcchhhHHH
Confidence            7777666665566554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.86  E-value=5.4e-09  Score=100.09  Aligned_cols=29  Identities=34%  Similarity=0.713  Sum_probs=25.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...++|++||||+|+|||+|+.+++..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35678999999999999999999998874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.82  E-value=9.8e-09  Score=100.45  Aligned_cols=29  Identities=34%  Similarity=0.727  Sum_probs=26.1

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...++|++||||+|||||+|+.+++..+.
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            35679999999999999999999998874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.79  E-value=8.6e-09  Score=90.19  Aligned_cols=49  Identities=6%  Similarity=0.009  Sum_probs=36.0

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +..+|+|||++..+...+..|.+++... ...+.+|+|||.+|.++-..|
T Consensus        76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~~~~~  124 (145)
T 3n70_A           76 QGGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASN  124 (145)
T ss_dssp             TTSCEEEECGGGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHHHHHS
T ss_pred             CCcEEEEcChHHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHHHHcC
Confidence            3478999999999877666666665221 224679999999999886544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.79  E-value=1.3e-08  Score=112.98  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=53.2

Q ss_pred             hcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH---H-CCCEEEEecCCC----hhhhhcCCCCcCCccc-----
Q psy318          179 SKTWLICFDEFQVTDI--------ADAMILKRLFTELF---Q-LGVVVVATSNRA----PDDLYKNGLQRSNFLP-----  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~---~-~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-----  237 (438)
                      ..+.+|+|||++.+-.        ....++..|+..+.   . .++.||+|+|++    |+-+.+++|+++...+     
T Consensus       296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~  375 (806)
T 3cf2_A          296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  375 (806)
T ss_dssp             SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence            4578999999998532        12334445554443   2 346788899984    3333345666665544     


Q ss_pred             -HHHHHHhhccccccccccchhccc
Q psy318          238 -FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       238 -~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                       ..++|+.++.-+.+....|+....
T Consensus       376 ~R~~IL~~~l~~~~~~~dvdl~~lA  400 (806)
T 3cf2_A          376 GRLEILQIHTKNMKLADDVDLEQVA  400 (806)
T ss_dssp             HHHHHHHHTCSSSEECTTCCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcccCHHHHH
Confidence             467888888888887777876543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.76  E-value=2.8e-08  Score=98.49  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=25.5

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+++|++||||||||||+|+.+++..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3567999999999999999999999887

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.75  E-value=2.8e-08  Score=99.83  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...++|++||||||||||+|+.+++..+.
T Consensus        81 ~~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           81 RKPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            45678999999999999999999999874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.74  E-value=1.7e-08  Score=99.64  Aligned_cols=54  Identities=22%  Similarity=0.437  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           30 QEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        30 Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |..++++|..+...-..+ |      .+|.....+++|++||||||||||+|+.++++.+.
T Consensus        23 ~~~~~~~l~~~i~~~~~~-~------~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           23 LEGAKEALKEAVILPVKF-P------HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CHHHHHHHHHHTHHHHHC-G------GGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhC-H------HHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            555666666554322221 1      12323345679999999999999999999998874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.72  E-value=9.8e-09  Score=114.00  Aligned_cols=145  Identities=23%  Similarity=0.400  Sum_probs=79.5

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE  140 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (438)
                      ....|+|++||||||||||+|+.+++..+..+      |..  ...-+.+.++-+..                      +
T Consensus       507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~------f~~--v~~~~l~s~~vGes----------------------e  556 (806)
T 3cf2_A          507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN------FIS--IKGPELLTMWFGES----------------------E  556 (806)
T ss_dssp             CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE------EEE--CCHHHHHTTTCSSC----------------------H
T ss_pred             CCCCCceEEEecCCCCCchHHHHHHHHHhCCc------eEE--eccchhhccccchH----------------------H
Confidence            35678999999999999999999999887432      111  11111111111000                      0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChh------h-----HHHHHHHHHHHH-
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA------D-----AMILKRLFTELF-  208 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~------d-----a~iL~~Lfn~l~-  208 (438)
                      +..+                .        +...|++  ..+++|+|||++.+-..      +     ..++..|+..+- 
T Consensus       557 ~~vr----------------~--------lF~~Ar~--~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg  610 (806)
T 3cf2_A          557 ANVR----------------E--------IFDKARQ--AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG  610 (806)
T ss_dssp             HHHH----------------H--------HHHHHHT--TCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred             HHHH----------------H--------HHHHHHH--cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence            0000                0        1112322  35789999999985311      1     134666666664 


Q ss_pred             ---HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHHhhccccccccccchhccc
Q psy318          209 ---QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       209 ---~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                         ..++.||+|+|+|    |+-|.+++|++..+.|.      .++|+.+..-..+..+.|+....
T Consensus       611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la  676 (806)
T 3cf2_A          611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA  676 (806)
T ss_dssp             SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-------
T ss_pred             CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence               2345677899986    56666788888777664      56677777777777677776543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.69  E-value=8.1e-09  Score=98.13  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=25.7

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||+|+|||+|+.+++..+.
T Consensus        41 ~~~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           41 AKIPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            35678999999999999999999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.63  E-value=2.5e-07  Score=87.94  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=36.6

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHH----------HHCCCEEEEecCCChhhhhc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTEL----------FQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l----------~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ...+|+|||++......+..|+++++..          ...++.+|+|||.+|.++..
T Consensus       100 ~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~  157 (265)
T 2bjv_A          100 DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN  157 (265)
T ss_dssp             TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred             CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence            3579999999999877666677777653          12356899999999888754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.58  E-value=1.2e-07  Score=83.30  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=24.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+++++|+|++|+|||+|+..+...+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999998874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.58  E-value=3.3e-07  Score=96.83  Aligned_cols=55  Identities=27%  Similarity=0.417  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.+|..+...+.+  |.   .+.  .-....|+|++||||+|+|||+|+.++...+.
T Consensus        35 G~~~~k~~l~~lv~~l~~--~~---~~~--~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           35 GAEEAKEELKEIVEFLKN--PS---RFH--EMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             SCHHHHHHHHHHHHHHHC--GG---GTT--TTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhhc--hh---hhh--hccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            466777778777766543  10   010  01235689999999999999999999998774

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.55  E-value=1e-07  Score=98.68  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=25.5

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ...++|++||||||||||+|+.+++..+
T Consensus       164 ~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          164 RTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            3567999999999999999999999887

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.54  E-value=2.2e-07  Score=81.43  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+++++|+|++|+|||+|+..++..+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999998874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.54  E-value=1.7e-07  Score=84.07  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ....+|+|||++..+......|..+++.. ..+..+|+|+|.+
T Consensus       101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~  142 (226)
T 2chg_A          101 APFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYV  142 (226)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred             cCceEEEEeChhhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence            35689999999998876666676666653 3456788898875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.54  E-value=2.5e-07  Score=90.94  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             CCeEEEecCCCCChh--hHHHHHHHHHHHH----HCCCEEEEecCCCh
Q psy318          181 TWLICFDEFQVTDIA--DAMILKRLFTELF----QLGVVVVATSNRAP  222 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~--da~iL~~Lfn~l~----~~g~~lV~TSN~~P  222 (438)
                      ..+|+|||++.....  .+..|..+++.+.    ..++.+|+|||.+|
T Consensus       131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~  178 (387)
T 2v1u_A          131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG  178 (387)
T ss_dssp             EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred             eEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence            459999999987654  5667777777664    44578999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.53  E-value=1.8e-07  Score=89.32  Aligned_cols=57  Identities=18%  Similarity=0.145  Sum_probs=41.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           21 NNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        21 ~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-+..++...+++.....+.+.+...             ....+++++||||+|+|||+|+.++...+.
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~-------------~~~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNS-------------DRTPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHC-------------SSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhcc-------------CCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            444556677677777666666666431             124567999999999999999999988763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.51  E-value=3.7e-07  Score=92.28  Aligned_cols=28  Identities=32%  Similarity=0.616  Sum_probs=24.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++++|||++|+|||+|+.++...+.
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            4578999999999999999999987763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.50  E-value=3.5e-07  Score=86.51  Aligned_cols=28  Identities=36%  Similarity=0.602  Sum_probs=25.3

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|+|++|||++|+|||+|+.++...+.
T Consensus        43 ~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            5678999999999999999999988774

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.47  E-value=2.7e-07  Score=97.13  Aligned_cols=28  Identities=36%  Similarity=0.737  Sum_probs=25.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ...|+|++|||++|||||+|+.++.+.+
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            4668999999999999999999998876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.46  E-value=3.7e-07  Score=91.53  Aligned_cols=28  Identities=29%  Similarity=0.592  Sum_probs=25.3

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++|++|||++|+|||+|+.+++..+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            5689999999999999999999988763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.46  E-value=3.5e-07  Score=89.30  Aligned_cols=58  Identities=19%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             cCCeEEEecCCCCC-hhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTD-IADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d-~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...+|+|||++... ...+..|.++++..- .++.+|+|+|.++ .+             .+.|..+|.++.+.
T Consensus       105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~-~l-------------~~~l~sR~~~i~~~  163 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNID-GI-------------IKPLQSRCRVITFG  163 (324)
T ss_dssp             CEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG-GS-------------CTTHHHHSEEEECC
T ss_pred             CCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc-cc-------------CHHHHhhCcEEEeC
Confidence            67899999999987 665666777776543 4578999999865 11             12455667777775

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.46  E-value=5.3e-07  Score=89.22  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++++|||++|+|||+|+..+++.+.
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999998873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.43  E-value=5e-07  Score=87.01  Aligned_cols=28  Identities=36%  Similarity=0.720  Sum_probs=25.1

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++|++||||+|+|||+|+.++...+.
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999988774

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.43  E-value=1.8e-06  Score=83.82  Aligned_cols=29  Identities=28%  Similarity=0.488  Sum_probs=25.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||+|+|||+|+.++...+.
T Consensus        41 l~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           41 LVTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            45679999999999999999999988764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.41  E-value=5.9e-07  Score=93.44  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+++||||+|+|||+|+.++.+.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            6899999999999999999998874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.40  E-value=2.2e-06  Score=84.73  Aligned_cols=48  Identities=19%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.++..+.+.+..              ...++++++||||+|+|||+|+.++...+.
T Consensus        48 G~~~~~~~l~~l~~~~~~--------------~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           48 GQLAARRAAGVVLEMIRE--------------GKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             SCHHHHHHHHHHHHHHHT--------------TCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHc--------------CCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            366666677666666543              123368999999999999999999999885

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.38  E-value=1.7e-06  Score=81.55  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=25.7

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+|++||||+|+|||+|+.++...+.
T Consensus        46 ~~~~~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           46 ARIPKGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999999999988774

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.38  E-value=5e-07  Score=88.87  Aligned_cols=49  Identities=18%  Similarity=0.139  Sum_probs=35.1

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      ..+|+|||++......+..|.++++...          ...+.+|+|||.++.++-..|
T Consensus        97 ~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g  155 (304)
T 1ojl_A           97 GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG  155 (304)
T ss_dssp             TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred             CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence            4689999999998766555666655431          123689999999987765543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.36  E-value=1.7e-06  Score=83.16  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=25.3

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++|++|+||+|+|||+|+.++...+.
T Consensus        71 ~~~~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           71 RIPKGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence            5678999999999999999999988774

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.34  E-value=2e-06  Score=82.90  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=32.7

Q ss_pred             CCeEEEecCCCCChhhHHHHHHHHHHHHH----------CCCEEEEecCCChhhhhc
Q psy318          181 TWLICFDEFQVTDIADAMILKRLFTELFQ----------LGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~----------~g~~lV~TSN~~P~~L~~  227 (438)
                      ..+|+|||++..+..-+..|..+++...-          .++.+|+|||..+..+..
T Consensus       120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~  176 (311)
T 4fcw_A          120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE  176 (311)
T ss_dssp             SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred             CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence            46999999999887655556666654320          134599999997765554

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.33  E-value=2.6e-06  Score=85.12  Aligned_cols=28  Identities=25%  Similarity=0.175  Sum_probs=25.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|.++|||||||||||+++..+...+.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999884

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.33  E-value=6.8e-07  Score=86.25  Aligned_cols=28  Identities=18%  Similarity=0.105  Sum_probs=24.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+.+++||||+|+|||+|+.++...+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999988874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.32  E-value=9.2e-07  Score=83.66  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |..++++||||||+|||+++.++.+.+.
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457899999999999999999988763

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.30  E-value=1.2e-06  Score=84.43  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      .+..+|+|||++......+..|..+++.. ..++.+|+|+|.++
T Consensus       109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~  151 (327)
T 1iqp_A          109 ASFKIIFLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSS  151 (327)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred             CCCeEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCcc
Confidence            35789999999998876666666666543 24567888988753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.30  E-value=3.4e-06  Score=82.59  Aligned_cols=48  Identities=27%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.+|..+......              ....+.+++|+|++|+|||+|+.++...+.
T Consensus        33 G~~~~~~~l~~~l~~~~~--------------~~~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           33 GQESIKKNLNVFIAAAKK--------------RNECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             SCHHHHHHHHHHHHHHHH--------------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            355566666655554432              123467899999999999999999987763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.28  E-value=4.7e-06  Score=82.23  Aligned_cols=42  Identities=12%  Similarity=0.031  Sum_probs=30.8

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHH---CCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQ---LGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~---~g~~lV~TSN~~  221 (438)
                      ...+|+|||++..+......|.++++.+-.   .++.+|++||.+
T Consensus       125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A          125 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             CeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            467999999999875555556666655554   577888898876

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=98.22  E-value=1.1e-06  Score=82.30  Aligned_cols=63  Identities=19%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      .+.+++|++||+|..  .+   +-.+++.|.+.|++||+++=.-       -++++.|.+...+|.-.-.|..|.
T Consensus        89 ~~~~DvIlIDEaQFf--k~---~ve~~~~L~~~gk~VI~~GL~~-------DF~~~~F~~~~~Ll~~Ad~v~kl~  151 (195)
T 1w4r_A           89 ALGVAVIGIDEGQFF--PD---IVEFCEAMANAGKTVIVAALDG-------TFQRKPFGAILNLVPLAESVVKLT  151 (195)
T ss_dssp             HHTCSEEEESSGGGC--TT---HHHHHHHHHHTTCEEEEEEESB-------CTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCCEEEEEchhhh--HH---HHHHHHHHHHCCCeEEEEeccc-------ccccccchhHHHHHHhcCeEEEee
Confidence            567999999999999  33   3345688889999999886442       266677777666553333344444

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.22  E-value=2.9e-06  Score=83.38  Aligned_cols=44  Identities=7%  Similarity=0.083  Sum_probs=33.5

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      ..+..+|+|||++..+...+..|.++++..- .++.+|++||.++
T Consensus       132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~  175 (354)
T 1sxj_E          132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMS  175 (354)
T ss_dssp             --CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred             CCCCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHH
Confidence            4578899999999998877777777777653 4577888888754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.20  E-value=3.4e-06  Score=81.71  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+++++|+|++|+|||+|+.++.+.+.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999988774

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.15  E-value=6.8e-06  Score=90.14  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +++|+||+|+|||+|+.++...+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            599999999999999999998873

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.15  E-value=3.7e-06  Score=75.84  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++.++|+|++|+|||+|+..++..+.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45799999999999999999998874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.15  E-value=5.3e-06  Score=81.04  Aligned_cols=58  Identities=17%  Similarity=0.142  Sum_probs=38.3

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...+|+|||++..+...+..|..+++..- ....+|+++|.+. .             ++..|..+|.++.+.
T Consensus       133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~-~-------------l~~~l~sR~~~i~~~  190 (353)
T 1sxj_D          133 PYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICNYVT-R-------------IIDPLASQCSKFRFK  190 (353)
T ss_dssp             SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-G-------------SCHHHHHHSEEEECC
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh-h-------------CcchhhccCceEEeC
Confidence            45699999999988776666777776643 2356777888643 2             223455666666554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.14  E-value=2.6e-06  Score=81.60  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=25.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++++||||+|+|||+|+.++...+.
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999998874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.12  E-value=5e-06  Score=81.46  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      +.+++||||||+|||+|+.++...+..+ -.++.++.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~-~~~i~~~~   81 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLD-FHRIQFTP   81 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCC-EEEEECCT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC-eEEEecCC
Confidence            4689999999999999999999887532 35566653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.09  E-value=2.7e-06  Score=83.37  Aligned_cols=28  Identities=29%  Similarity=0.689  Sum_probs=25.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+..++|+|++|+|||+|+..+...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4467899999999999999999998874

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.06  E-value=4.6e-06  Score=78.03  Aligned_cols=129  Identities=11%  Similarity=0.074  Sum_probs=72.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH-----HHHHHHHHHHhhhcccCCCCCCCCCccccchHHH-
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV-----HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE-  140 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  140 (438)
                      -|.+|+++|.|||+++=...-.+. .+..||.|-+|+..-     ...+.++.-.-   ...+  .++.     +..+. 
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~---~~~g--~gf~-----~~~~~~   98 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKGTWPNGERNLLEPHGVEF---QVMA--TGFT-----WETQNR   98 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCCSSCCHHHHHHGGGTCEE---EECC--TTCC-----CCGGGH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCCCCccHHHHHHhCCcEE---EEcc--cccc-----cCCCCc
Confidence            489999999999999877766553 557899999998631     01111110000   0000  0111     11111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEE
Q psy318          141 EKEREREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVV  215 (438)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV  215 (438)
                      +....+.++.+                    ..+++.+  .++|+|++||+...   +.-+...++.++....+ ...||
T Consensus        99 ~~~~~~a~~~l--------------------~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~-~~~vI  157 (196)
T 1g5t_A           99 EADTAACMAVW--------------------QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG-HQTVI  157 (196)
T ss_dssp             HHHHHHHHHHH--------------------HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT-TCEEE
T ss_pred             HHHHHHHHHHH--------------------HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC-CCEEE
Confidence            11111111111                    1255555  56999999999541   22222336666665553 36899


Q ss_pred             EecCCChhhhhc
Q psy318          216 ATSNRAPDDLYK  227 (438)
Q Consensus       216 ~TSN~~P~~L~~  227 (438)
                      +|+|.+|.+|-.
T Consensus       158 lTGr~ap~~l~e  169 (196)
T 1g5t_A          158 ITGRGCHRDILD  169 (196)
T ss_dssp             EECSSCCHHHHH
T ss_pred             EECCCCcHHHHH
Confidence            999999998865

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.04  E-value=6.3e-06  Score=81.35  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      +..++++||++......+..|..+++..- ....+|+++|.+. .+             +..|..+|.++.+.
T Consensus       110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~-~i-------------~~~i~sR~~~~~~~  167 (340)
T 1sxj_C          110 GFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAH-KL-------------TPALLSQCTRFRFQ  167 (340)
T ss_dssp             SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-GS-------------CHHHHTTSEEEECC
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCcc-cc-------------chhHHhhceeEecc
Confidence            47899999999987766666777777543 3457778888642 11             23456666666554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.03  E-value=8.7e-06  Score=78.20  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ...+|+|||++......+..|..+++.. ..+..+|+++|.+
T Consensus       107 ~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~  147 (323)
T 1sxj_B          107 KHKIVILDEADSMTAGAQQALRRTMELY-SNSTRFAFACNQS  147 (323)
T ss_dssp             CCEEEEEESGGGSCHHHHHTTHHHHHHT-TTTEEEEEEESCG
T ss_pred             CceEEEEECcccCCHHHHHHHHHHHhcc-CCCceEEEEeCCh
Confidence            3789999999998766555566666653 2446788888763

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.97  E-value=2.5e-06  Score=90.04  Aligned_cols=26  Identities=12%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+|+|+||||+|||+|+.++...+.
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHHh
Confidence            46899999999999999999998774

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.92  E-value=3e-05  Score=84.83  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      .++|+||+|+|||+|+.++...+. ..-.++...+++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~~  525 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM  525 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGCS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhhc
Confidence            599999999999999999998884 223455555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.88  E-value=3.4e-06  Score=80.88  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=22.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +++||||+|+|||+++.++...+.
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhc
Confidence            499999999999999999998873

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.87  E-value=4.9e-05  Score=84.61  Aligned_cols=61  Identities=11%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             hHHHH----HHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318           11 PSKQY----YEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        11 p~~~Y----~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      .++.|    .+....+.+.+=..|...+.++..+   |.                ...+++++|+|++|+|||+|+.++.
T Consensus       152 ~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~---l~----------------~~~~~~vlL~G~pG~GKT~la~~la  212 (854)
T 1qvr_A          152 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQI---LL----------------RRTKNNPVLIGEPGVGKTAIVEGLA  212 (854)
T ss_dssp             HHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHH---HH----------------CSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHH---Hh----------------cCCCCceEEEcCCCCCHHHHHHHHH
Confidence            45554    3455566665544555544444433   21                1235689999999999999999999


Q ss_pred             Hhhh
Q psy318           87 ESCE   90 (438)
Q Consensus        87 ~~l~   90 (438)
                      ..+.
T Consensus       213 ~~l~  216 (854)
T 1qvr_A          213 QRIV  216 (854)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8873

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.87  E-value=9.7e-06  Score=85.23  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+++++||||+|+|||+|+.++...+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56899999999999999999999887

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.87  E-value=9.1e-06  Score=79.38  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+++|||++|+|||+|+.++...+.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            35799999999999999999998774

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.86  E-value=2.7e-05  Score=77.83  Aligned_cols=27  Identities=19%  Similarity=0.475  Sum_probs=24.4

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.+++||||+|+|||+|+.++...+.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998873

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.82  E-value=6.5e-05  Score=74.84  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=25.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++++|+||+|||||+|+.++...+.
T Consensus        49 ~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           49 LGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3578999999999999999999998874

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.81  E-value=1.8e-05  Score=77.28  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=45.1

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHH-------HHHH-----CCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFT-------ELFQ-----LGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYC  246 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn-------~l~~-----~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~  246 (438)
                      ....|++.||...++.+.. .+.++|.       .-+.     ...++|+|||..+.....++...   .+.+.-|+++|
T Consensus       147 ~~k~i~l~Ee~~~~~d~~~-~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s---~~~~~~L~sR~  222 (267)
T 1u0j_A          147 VDKMVIWWEEGKMTAKVVE-SAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT---FEHQQPLQDRM  222 (267)
T ss_dssp             SSCSEEEECSCCEETTTHH-HHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE---CTTHHHHHTTE
T ss_pred             cccEEEEeccccchhHHHH-HHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc---hhhhHHHhhhE
Confidence            4568888899888764432 3555554       1112     44589999999877755443321   13456699999


Q ss_pred             cccccc
Q psy318          247 DVASLN  252 (438)
Q Consensus       247 ~vv~ld  252 (438)
                      .++.+.
T Consensus       223 ~~f~F~  228 (267)
T 1u0j_A          223 FKFELT  228 (267)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999998

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.81  E-value=1.7e-05  Score=75.82  Aligned_cols=71  Identities=21%  Similarity=0.151  Sum_probs=46.6

Q ss_pred             hcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh-hhhhcC-----CCCcCCcccHHHHHHhhccccc
Q psy318          179 SKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP-DDLYKN-----GLQRSNFLPFIDVLKTYCDVAS  250 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P-~~L~~~-----gl~r~~F~p~I~~L~~~~~vv~  250 (438)
                      ..++++++||+....  ......++..+..+++.|..+++|+|.-. +.|..-     |..-.-  .+-+.+.+.|.-|.
T Consensus        83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e--~vpd~~~~~a~~v~  160 (228)
T 2r8r_A           83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRE--TLPDWVLQEAFDLV  160 (228)
T ss_dssp             HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCS--CBCHHHHHTCSEEE
T ss_pred             cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCC--cCccHHHhhCCeEE
Confidence            579999999999752  23334567777889999999999999753 233221     333221  23378888885444


Q ss_pred             c
Q psy318          251 L  251 (438)
Q Consensus       251 l  251 (438)
                      +
T Consensus       161 l  161 (228)
T 2r8r_A          161 L  161 (228)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.80  E-value=2.5e-05  Score=76.78  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +..++|||++|+|||+|+.++...+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999998874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.76  E-value=6.4e-05  Score=83.69  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++|+||+|+|||+|+.++...+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999998884

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.76  E-value=0.00014  Score=75.13  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML  104 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~  104 (438)
                      .+++.|.+|+..+...   +.+                . ...++|.|++|||||+++..+...+....+.++..-.|..
T Consensus        25 ~Ln~~Q~~av~~~~~~---i~~----------------~-~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~   84 (459)
T 3upu_A           25 DLTEGQKNAFNIVMKA---IKE----------------K-KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH   84 (459)
T ss_dssp             CCCHHHHHHHHHHHHH---HHS----------------S-SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred             cCCHHHHHHHHHHHHH---Hhc----------------C-CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence            3689999999876543   221                1 1279999999999999999999888544444666666655


Q ss_pred             HHHHHHH
Q psy318          105 DVHAKIH  111 (438)
Q Consensus       105 ~v~~~l~  111 (438)
                      ...+.|.
T Consensus        85 ~Aa~~l~   91 (459)
T 3upu_A           85 AAKKILS   91 (459)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.72  E-value=7e-05  Score=74.14  Aligned_cols=45  Identities=16%  Similarity=0.083  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|..++..|....+   +               ...|.+++||||+|+|||.++.+|...+.
T Consensus         5 pw~~~~~~~l~~~i~---~---------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A            5 PWLRPDFEKLVASYQ---A---------------GRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             GGGHHHHHHHHHHHH---T---------------TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHH---c---------------CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            567777666655432   1               23467899999999999999999999884

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.68  E-value=3e-05  Score=82.32  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      .+..++|+||+|+|||+|+.++...+.. ...++.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence            4567999999999999999999988842 234454433

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.67  E-value=5.6e-05  Score=75.18  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             CCCceEE--EccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYI--YGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL--~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+..++|  ||++|+|||+|+..+++.+.
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            4568999  99999999999999998874

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.66  E-value=0.00019  Score=76.86  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=34.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHE  112 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~  112 (438)
                      +-++|.|++|||||+++..+...+.. .+.++.+-.+.....++|.+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e  250 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGE  250 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHh
Confidence            46899999999999999999887753 35677776666655555543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.66  E-value=0.00019  Score=72.14  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ..+.|+|+||+|||+|+-.+...
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            44799999999999999999775

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.60  E-value=9.5e-05  Score=88.89  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      ..+.++++.||||+|+|||||+.++...+. ....++-|..|-
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1464 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcc
Confidence            356788999999999999999999977764 335566665554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.57  E-value=0.0007  Score=61.41  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+|+.++...+.
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67999999999999999987764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.49  E-value=2.9e-05  Score=70.99  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=38.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld  252 (438)
                      +.++|+|||+|..+..+.    ..+..+.+.|..+|+|+...       .+++..|.+... |...++ +.++.
T Consensus        76 ~~dvviIDE~Q~~~~~~~----~~l~~l~~~~~~Vi~~Gl~~-------~f~~~~f~~~~~-ll~~ad~v~~l~  137 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLF----EVVKDLLDRGIDVFCAGLDL-------THKQNPFETTAL-LLSLADTVIKKK  137 (184)
T ss_dssp             TEEEEEECCGGGSCTTHH----HHHHHHHHTTCEEEEEEESB-------CTTSCBCHHHHH-HHHHCSEEEECC
T ss_pred             CCCEEEEECcccCCHHHH----HHHHHHHHCCCCEEEEeecc-------ccccCCccchHH-HHHHhhheEEee
Confidence            578999999999865533    34455556688888887643       144455555444 444554 44555

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.41  E-value=0.00016  Score=79.01  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+++++|+|++|+|||+|+.++...+.
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l~  232 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRIV  232 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999998773

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.39  E-value=0.00041  Score=66.98  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=22.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.++|+|+.|+|||.|+..+.+.+.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            4799999999999999999988764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.31  E-value=0.00026  Score=67.85  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +..+++|+|||+|...  +   +..+.+.+.+.|+.||+|+-.
T Consensus        88 ~~~~dvViIDEaQF~~--~---v~el~~~l~~~gi~VI~~GL~  125 (234)
T 2orv_A           88 ALGVAVIGIDEGQFFP--D---IVEFCEAMANAGKTVIVAALD  125 (234)
T ss_dssp             HTTCSEEEESSGGGCT--T---HHHHHHHHHHTTCEEEEECCS
T ss_pred             hccCCEEEEEchhhhh--h---HHHHHHHHHhCCCEEEEEecc
Confidence            3679999999999985  2   667778888899999999876

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.27  E-value=0.00025  Score=73.22  Aligned_cols=48  Identities=23%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.+|..+.+.+..              ...+|+|++||||||||||+|+.++...+.
T Consensus        41 G~~~~~~~l~~~~~~~~~--------------~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           41 GQENAREACGVIVELIKS--------------KKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             SCHHHHHHHHHHHHHHHT--------------TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHh--------------CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            477777777777665532              224568999999999999999999998874

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.26  E-value=0.0007  Score=64.03  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=43.5

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      .+++|+|||+|..+...   + .++..+.+.|+.||+|+-.-       -++++.|.+.-.+|.-.=.|.+|.
T Consensus       101 ~~dvViIDEaQF~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~-------DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDI---V-EVVQVLANRGYRVIVAGLDQ-------DFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGGSCTTH---H-HHHHHHHHTTCEEEEEECSB-------CTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECcccCCHHH---H-HHHHHHhhCCCEEEEEeccc-------ccccCccccHHHHHHhcccEEeee
Confidence            58999999999987543   2 45666667799999988652       266777777776664444455555

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.23  E-value=0.00043  Score=71.93  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+.+++|+|+||+|||+|+.++...+
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999887

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.23  E-value=0.00077  Score=81.23  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      .+.+..++|+|++|||||+|+-.|..... +...++-|-.|-
T Consensus      1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~-k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A         1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1118 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEcc
Confidence            45667899999999999999999987663 335556665543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.21  E-value=0.00029  Score=66.80  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld  252 (438)
                      .+++|++||+|..+..    +..++..+.+.|+.||+|+-..       .+.++.|.+...++. .++ |..|.
T Consensus        89 ~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl~~-------df~~~~F~~~~~Ll~-lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGLDK-------NFKGEPFGPIAKLFT-YADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECCSB-------CTTSSBCTTHHHHHH-HCSEEEECC
T ss_pred             CCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEeccc-------cccCCcCCCcHHHHH-HhheEeecc
Confidence            4899999999997644    2234455566789999998753       255566666544443 433 44443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.19  E-value=0.0026  Score=60.78  Aligned_cols=48  Identities=8%  Similarity=0.110  Sum_probs=31.3

Q ss_pred             HHHHhhcCCeEEEecCCC---CChhhH---HHHHHHHHHHH-HCCCEEEEecCCC
Q psy318          174 ANDIISKTWLICFDEFQV---TDIADA---MILKRLFTELF-QLGVVVVATSNRA  221 (438)
Q Consensus       174 a~~~~~~~~lLc~DEf~v---~d~~da---~iL~~Lfn~l~-~~g~~lV~TSN~~  221 (438)
                      +..++.++++|+|||+..   .|....   ..+.+.+..+. +.|+.+|+++...
T Consensus       127 i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~  181 (279)
T 1nlf_A          127 LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS  181 (279)
T ss_dssp             HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            455667899999999997   343322   33445555554 5688888877653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.18  E-value=0.0017  Score=62.49  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=22.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.++|+|+.|+|||.|+..+.+.+
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            579999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.16  E-value=0.003  Score=59.73  Aligned_cols=49  Identities=18%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd  205 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            47899999999999999987 7988888899999988754 8777777765

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.12  E-value=0.00053  Score=65.09  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             eEEEccCCCCHhH-HHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHH
Q psy318           68 LYIYGAVGGGKTM-LMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERER  146 (438)
Q Consensus        68 lyL~G~vG~GKT~-Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (438)
                      .+++|+.|+|||. |+..+.+...  .+.++..-++..+-...........+            ......          
T Consensus        31 ~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D~R~~~~~I~Sr~G------------~~~~a~----------   86 (219)
T 3e2i_A           31 ECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAIDDRYHKEKVVSHNG------------NAIEAI----------   86 (219)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-----------CBTT------------BCCEEE----------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccCCcchhhhHHHhcC------------CceeeE----------
Confidence            5789999999999 8888866653  34567776776654321111111100            000000          


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          147 EREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       147 ~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                                         ..+....+...+....++|.+||.|..+...    ...++.+.+.|++|++++=.      
T Consensus        87 -------------------~v~~~~di~~~i~~~~dvV~IDEaQFf~~~~----v~~l~~la~~gi~Vi~~GLd------  137 (219)
T 3e2i_A           87 -------------------NISKASEIMTHDLTNVDVIGIDEVQFFDDEI----VSIVEKLSADGHRVIVAGLD------  137 (219)
T ss_dssp             -------------------EESSGGGGGGSCCTTCSEEEECCGGGSCTHH----HHHHHHHHHTTCEEEEEEES------
T ss_pred             -------------------EeCCHHHHHHHHhcCCCEEEEechhcCCHHH----HHHHHHHHHCCCEEEEeecc------
Confidence                               0011111222223578999999999987542    23445555789988887642      


Q ss_pred             cCCCCcCCcccHHHHHHhhccccccc
Q psy318          227 KNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       227 ~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                       .-+.++.|.+...+|.-.=.+..|.
T Consensus       138 -~DF~~~~F~~~~~Ll~~Ad~v~kl~  162 (219)
T 3e2i_A          138 -MDFRGEPFEPMPKLMAVSEQVTKLQ  162 (219)
T ss_dssp             -BCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred             -cccccCCCccHHHHHHhcceEEEee
Confidence             2367788888877665444455555

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.10  E-value=0.0026  Score=57.62  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=28.3

Q ss_pred             hcCC--eEEEecCCCC---ChhhHHHHHHHHHHHH-HCCCEEEEecCCC
Q psy318          179 SKTW--LICFDEFQVT---DIADAMILKRLFTELF-QLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~--lLc~DEf~v~---d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~  221 (438)
                      .+++  +|++||+...   |......+.+.+..+. +.|+.+|+++...
T Consensus       120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            4688  9999999953   5544445555666554 5687777777654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.03  E-value=0.007  Score=56.68  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  199 (224)
T 2pcj_A          150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE  199 (224)
T ss_dssp             HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47889999999999999987 79888888999999998778777777765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.01  E-value=0.01  Score=56.91  Aligned_cols=49  Identities=18%  Similarity=0.329  Sum_probs=42.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd  205 (256)
T 1vpl_A          156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN  205 (256)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47899999999999999987 79888888999999988778777777764

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=96.96  E-value=0.00097  Score=82.40  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      +++|+|+||||||||||+..+....+.-.-..++|+...
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t 1305 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT 1305 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC
Confidence            589999999999999999655555433334567776654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.96  E-value=0.0013  Score=58.61  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=34.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChh----------------hHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIA----------------DAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~----------------da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+..++.+|++||--. .|..                ....+..++..+.+.|..+|++|..
T Consensus        93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~  158 (171)
T 4gp7_A           93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS  158 (171)
T ss_dssp             HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred             HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence            46888889999999999764 3443                2244566666676678777777655

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.95  E-value=0.0085  Score=58.23  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|...
T Consensus       153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl  204 (275)
T 3gfo_A          153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI  204 (275)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence            47899999999999999887 79888888999999987 5687777777653

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.95  E-value=0.0012  Score=61.03  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcccc-ccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVA-SLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv-~ld  252 (438)
                      ...++|++||.|..+...    ..++..+.+.|+.||+|+-..       -++++.|.+.-.+| ..++.| ++.
T Consensus        80 ~~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl~~-------df~~~~F~~~~~L~-~~AD~V~el~  142 (191)
T 1xx6_A           80 EDTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLDM-------DFRGKPFGPIPELM-AIAEFVDKIQ  142 (191)
T ss_dssp             TTCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECSB-------CTTSCBCTTHHHHH-HHCSEEEECC
T ss_pred             ccCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEeccc-------ccccCcCccHHHHH-HHcccEEeee
Confidence            358999999999987543    234566667788999987653       25566675555444 444433 454

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.90  E-value=0.0014  Score=71.83  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+.+++|||+||+|||+|+.++...+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999887

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.87  E-value=0.023  Score=54.76  Aligned_cols=49  Identities=16%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  218 (263)
T 2olj_A          169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE  218 (263)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47899999999999999987 79888888999999988778777777764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.81  E-value=0.0048  Score=57.79  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd  192 (214)
T 1sgw_A          143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE  192 (214)
T ss_dssp             HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred             HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46889999999999999987 68888888889998887667777777765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.80  E-value=0.0045  Score=56.78  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.3

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +...-+.|+|++|+|||+|+..+...+
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            344568999999999999999987753

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.76  E-value=0.00013  Score=78.48  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +|+|+||||+|||+|+.++...++
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~  352 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAP  352 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred             ceEEECCCchHHHHHHHHHHHhCC
Confidence            799999999999999999987764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.73  E-value=0.012  Score=56.19  Aligned_cols=49  Identities=33%  Similarity=0.358  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+. |..+|++|..
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd  188 (253)
T 2nq2_C          138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ  188 (253)
T ss_dssp             HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47899999999999999987 7988888899999998776 7777777754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.72  E-value=0.01  Score=56.95  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ....=+.|.|++|+|||.|+..+...+......++.|
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~   69 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL   69 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence            3344588999999999999999887775433435544

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=96.71  E-value=0.009  Score=60.42  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCCCc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGLQR  232 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl~r  232 (438)
                      +--.|+|||++......+..|.++++.-.          ...+.+|+|||..+.++-..|..|
T Consensus       231 ~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr  293 (387)
T 1ny5_A          231 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR  293 (387)
T ss_dssp             TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred             CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCcc
Confidence            34799999999998877777777766421          124579999999998887655443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.67  E-value=0.014  Score=55.50  Aligned_cols=49  Identities=10%  Similarity=0.086  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  202 (250)
T 2d2e_A          153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY  202 (250)
T ss_dssp             HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred             HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47899999999999999887 78888888889998886667777777765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.66  E-value=0.049  Score=50.48  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=25.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHH-Hhhhcc---cceeeechhhhHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY-ESCETK---QKQRVHFNKFMLDVH  107 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~-~~l~~~---~k~R~Hf~~fm~~v~  107 (438)
                      .+-+.+.|++|||||.++-++. +.+...   .+.++-|-.-...+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la  122 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA  122 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHH
Confidence            3679999999999997665543 322211   123666654444443

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.66  E-value=0.0066  Score=57.06  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=19.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++|.|++|+|||+++-++...+
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            48999999999999988876655

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.65  E-value=0.015  Score=52.44  Aligned_cols=25  Identities=24%  Similarity=0.088  Sum_probs=21.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +...-+.|+|++|+|||+|+..+..
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445589999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.63  E-value=0.0094  Score=56.99  Aligned_cols=49  Identities=27%  Similarity=0.357  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCC-------eEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTW-------LICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~-------lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.+++       +|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  192 (249)
T 2qi9_C          136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD  192 (249)
T ss_dssp             HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46888999999       999999987 79888888999999987778777777754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.011  Score=54.26  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             hcCCeEEEecCCCC---Chhh-HHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318          179 SKTWLICFDEFQVT---DIAD-AMILKRLFTELFQLGVVVVATSNRAP  222 (438)
Q Consensus       179 ~~~~lLc~DEf~v~---d~~d-a~iL~~Lfn~l~~~g~~lV~TSN~~P  222 (438)
                      .++++|++|+++..   +... ...+..|.+.+.+.|+.+|++++...
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~  174 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV  174 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35899999999985   3322 34456666666788888888887653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.50  E-value=0.0055  Score=55.65  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..=+.|.|++|+|||+|+.++...+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3448899999999999999997654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.49  E-value=0.0076  Score=71.83  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=53.7

Q ss_pred             CcEEEeeHHH-----------------HhcCCCChhhHHHHhh------ccCEEEEcCCCCCCcCC-ch----------H
Q psy318          317 GQILEATFDE-----------------LCSRDLGSSDYLHICQ------IFHTVIIRNVPQLNIKL-RS----------Q  362 (438)
Q Consensus       317 ~~va~f~F~e-----------------LC~~plg~aDYl~la~------~f~ti~i~~VP~l~~~~-~n----------~  362 (438)
                      +.+|+|+|++                 ||.+|-.-.+-|++++      ..+.|+|+-|.-|.... -+          +
T Consensus      1460 ~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ 1539 (1706)
T 3cmw_A         1460 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 1539 (1706)
T ss_dssp             CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHH
T ss_pred             CeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHH
Confidence            5678899963                 4557766677777765      57899999999887642 23          6


Q ss_pred             HHHH----HHHHHHhhhCCCeEEEEeCC--Chhhhcccc
Q psy318          363 SRRF----ITLIDALYDNNIRLVISSDV--PLNKLFSNE  395 (438)
Q Consensus       363 arRF----I~LID~lYd~~vkL~~~a~~--~~~~Lf~~~  395 (438)
                      ||.+    .-|.+.+-..+|-+++....  -+--.|...
T Consensus      1540 ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1578 (1706)
T 3cmw_A         1540 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 1578 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEECBC--------CC
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCCC
Confidence            6665    67899999999999988765  233445443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.42  E-value=0.038  Score=55.73  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=39.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  205 (355)
T 1z47_A          155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD  205 (355)
T ss_dssp             HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            47899999999999999887 7888777788888888654 7777777654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.42  E-value=0.015  Score=58.57  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      .+...-+.|+|++|+|||+|+-.+...+... ..++-|-.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid   98 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID   98 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            3445669999999999999998877665422 33555533

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.41  E-value=0.03  Score=57.06  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|+.|..
T Consensus       143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd  193 (381)
T 3rlf_A          143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  193 (381)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            47899999999999999887 7888778888888888654 8877777665

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.41  E-value=0.0071  Score=64.65  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...++|+||+|+|||+|+.++...++
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999988775

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.33  E-value=0.024  Score=57.57  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  201 (372)
T 1v43_A          151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD  201 (372)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999887 7888777788888888654 7777777664

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.31  E-value=0.01  Score=60.19  Aligned_cols=49  Identities=16%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+..++..+.+ .|..+|+.|..
T Consensus       173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd  223 (366)
T 3tui_C          173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE  223 (366)
T ss_dssp             HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            47899999999999999987 798888888999999865 48777777665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.30  E-value=0.0022  Score=63.32  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             CCChH-HHHHHHHHcCCCCCC-----HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318            8 SSLPS-KQYYEKLSNNEIQED-----KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML   81 (438)
Q Consensus         8 ~~~p~-~~Y~~~v~~g~l~~D-----~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L   81 (438)
                      ++.|- ..|+..+..  +++.     -.|..++..|......-..              ....+..++||||+|+|||+|
T Consensus         4 ~~~~~~~~~~~~~~~--lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------------~~~~~~~~ll~Gp~G~GKTTL   67 (334)
T 1in4_A            4 FLTPERTVYDSGVQF--LRPKSLDEFIGQENVKKKLSLALEAAKM--------------RGEVLDHVLLAGPPGLGKTTL   67 (334)
T ss_dssp             -------------CT--TSCSSGGGCCSCHHHHHHHHHHHHHHHH--------------HTCCCCCEEEESSTTSSHHHH
T ss_pred             ccccchHHHHHHHHH--cCCccHHHccCcHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCcHHHH
Confidence            45564 557765543  3332     2466666666554332111              112456799999999999999


Q ss_pred             HHHHHHhhh
Q psy318           82 MDIFYESCE   90 (438)
Q Consensus        82 md~f~~~l~   90 (438)
                      +.++...+.
T Consensus        68 a~~ia~~l~   76 (334)
T 1in4_A           68 AHIIASELQ   76 (334)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999998873

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.012  Score=63.36  Aligned_cols=49  Identities=12%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|+|||--. +|+.....+..++..+.+.|..+|+.|..
T Consensus       231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  280 (608)
T 3j16_B          231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD  280 (608)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred             HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47889999999999999887 79888888999999998888877777765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.26  E-value=0.013  Score=62.19  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|+.+|++|..
T Consensus       168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd  217 (538)
T 1yqt_A          168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD  217 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47899999999999999876 79888888999999998888878877765

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.25  E-value=0.071  Score=47.54  Aligned_cols=45  Identities=11%  Similarity=-0.019  Sum_probs=32.0

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      ..+.+...|--.+-+.|.+++..+..                         .+.+++.+|+|+|||...-
T Consensus        14 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~apTGsGKT~~~~   58 (206)
T 1vec_A           14 LLMGIFEMGWEKPSPIQEESIPIALS-------------------------GRDILARAKNGTGKSGAYL   58 (206)
T ss_dssp             HHHHHHTTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCSSSTTHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHcc-------------------------CCCEEEECCCCCchHHHHH
Confidence            34455555555789999998875421                         1579999999999996544

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.24  E-value=0.054  Score=54.88  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus       149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  199 (372)
T 1g29_1          149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (372)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence            47899999999999999886 7888777788888888654 7777776654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.23  E-value=0.021  Score=54.78  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             HHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .++..+..++++|++||.-  |....   ..++... ..|..+++|+..
T Consensus        90 ~la~aL~~~p~illlDEp~--D~~~~---~~~l~~~-~~g~~vl~t~H~  132 (261)
T 2eyu_A           90 ALRAALREDPDVIFVGEMR--DLETV---ETALRAA-ETGHLVFGTLHT  132 (261)
T ss_dssp             HHHHHHHHCCSEEEESCCC--SHHHH---HHHHHHH-HTTCEEEEEECC
T ss_pred             HHHHHHhhCCCEEEeCCCC--CHHHH---HHHHHHH-ccCCEEEEEeCc
Confidence            4677778899999999997  54432   2334443 567777777765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.20  E-value=0.049  Score=55.02  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  193 (362)
T 2it1_A          143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD  193 (362)
T ss_dssp             HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            47899999999999999887 7888878888888888654 7777776654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.19  E-value=0.028  Score=54.12  Aligned_cols=49  Identities=16%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             HHHHHHhh------cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCC
Q psy318          172 PVANDIIS------KTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~------~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~  220 (438)
                      .+|+.++.      ++++|++||--. +|+..+..+..++..+.+.+ ..+|++|..
T Consensus       151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd  207 (266)
T 4g1u_C          151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD  207 (266)
T ss_dssp             HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred             HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence            47888998      999999999887 79888888999999987664 456666554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.18  E-value=0.021  Score=53.98  Aligned_cols=48  Identities=15%  Similarity=0.322  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+. .|..+|++|..
T Consensus       149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~  197 (243)
T 1mv5_A          149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR  197 (243)
T ss_dssp             HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence            47899999999999999987 68777677788888876 67777777765

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.17  E-value=0.0068  Score=59.65  Aligned_cols=25  Identities=12%  Similarity=-0.140  Sum_probs=21.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +..++||||+|+|||.++.++...+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            3478899999999999999998754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.12  E-value=0.022  Score=57.00  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ...-+.|+|++|+|||+|+-.+...+... ..++-|
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vly   94 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAF   94 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEE
Confidence            34459999999999999977776555322 334544

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.10  E-value=0.052  Score=54.53  Aligned_cols=49  Identities=12%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|..
T Consensus       137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd  187 (348)
T 3d31_A          137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD  187 (348)
T ss_dssp             HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            46899999999999999887 788877778888888865 47777777654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.10  E-value=0.009  Score=58.77  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +...-+.|+|++|+|||.|+-.+...+
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            444568999999999999998887665

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=96.09  E-value=0.041  Score=52.32  Aligned_cols=47  Identities=15%  Similarity=0.034  Sum_probs=34.1

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      .+.+-+.|--.+-|.|.+++..+..                         .+.+++.+|+|+|||..+-+..
T Consensus         6 ~~~l~~~g~~~l~~~Q~~~i~~i~~-------------------------~~~~lv~~~TGsGKT~~~~~~~   52 (337)
T 2z0m_A            6 EQAIREMGFKNFTEVQSKTIPLMLQ-------------------------GKNVVVRAKTGSGKTAAYAIPI   52 (337)
T ss_dssp             HHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCHHHHHHHHHHhc-------------------------CCCEEEEcCCCCcHHHHHHHHH
Confidence            3455556666789999998875431                         2469999999999998665443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.03  E-value=0.063  Score=57.76  Aligned_cols=49  Identities=12%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|.-
T Consensus       481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd  531 (607)
T 3bk7_A          481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD  531 (607)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999887 79888888999999886 457766666654

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=95.99  E-value=0.086  Score=55.79  Aligned_cols=40  Identities=20%  Similarity=0.013  Sum_probs=27.8

Q ss_pred             HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +....+.+++||||-+++.+..+    +..|...+..+++.++.
T Consensus       210 ~~~~~~~ilVDE~QD~~~~q~~l----l~~l~~~~~~l~~vGD~  249 (647)
T 3lfu_A          210 YRERFTNILVDEFQDTNNIQYAW----IRLLAGDTGKVMIVGDD  249 (647)
T ss_dssp             HHHHCCEEEESSGGGCCHHHHHH----HHHHHTTTCEEEEEECG
T ss_pred             HHhhCCEEEEECcccCCHHHHHH----HHHHhcCCCEEEEEcCc
Confidence            33468999999999998776444    44455556667777663

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.97  E-value=0.018  Score=65.04  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=34.3

Q ss_pred             hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHH-CCCEEEEecCC
Q psy318          178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      +.+.+||++||... +|+.+...+ ..++..+.. .|..+|++|..
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~  784 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF  784 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence            57889999999998 687766555 677888876 48888888887

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.96  E-value=0.019  Score=54.17  Aligned_cols=48  Identities=10%  Similarity=0.050  Sum_probs=36.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHH---HHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFT---ELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn---~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++.   .+ ..|..+|++|..
T Consensus       137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~  188 (237)
T 2cbz_A          137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHS  188 (237)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSC
T ss_pred             HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecC
Confidence            47899999999999999987 78877676766663   23 347777777765

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=95.95  E-value=0.055  Score=51.97  Aligned_cols=77  Identities=12%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh-hc
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC-ET   91 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~   91 (438)
                      ...+.+-+.|--.+-+.|.+++..+-.                        ..+.+++.+|+|+|||..+-+..-.. ..
T Consensus        16 ~~~~~l~~~g~~~~~~~Q~~~i~~~~~------------------------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~   71 (367)
T 1hv8_A           16 NILNAIRNKGFEKPTDIQMKVIPLFLN------------------------DEYNIVAQARTGSGKTASFAIPLIELVNE   71 (367)
T ss_dssp             HHHHHHHHHTCCSCCHHHHHHHHHHHH------------------------TCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHhC------------------------CCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence            334555566666899999999875521                        12579999999999998765543332 22


Q ss_pred             ccceeeec----hhhhHHHHHHHHHH
Q psy318           92 KQKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        92 ~~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      ..+.++-+    ......+.+.+.+.
T Consensus        72 ~~~~~~lil~P~~~L~~q~~~~~~~~   97 (367)
T 1hv8_A           72 NNGIEAIILTPTRELAIQVADEIESL   97 (367)
T ss_dssp             SSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence            22334433    34445555554443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.93  E-value=0.026  Score=57.04  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  193 (359)
T 2yyz_A          143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD  193 (359)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            47899999999999999887 7888777788888888654 7777776654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.91  E-value=0.0016  Score=65.70  Aligned_cols=28  Identities=21%  Similarity=0.564  Sum_probs=23.5

Q ss_pred             CCc-eEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           65 PKG-LYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      +.| +.|.||+|+|||+|+.++...++..
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            445 7899999999999999998887543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.90  E-value=0.0055  Score=60.62  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=38.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+..++..+.. +..+|+.|.+
T Consensus       200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~  248 (306)
T 3nh6_A          200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR  248 (306)
T ss_dssp             HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence            47899999999999999987 788877778888888764 5666666665

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.89  E-value=0.029  Score=58.83  Aligned_cols=49  Identities=10%  Similarity=-0.130  Sum_probs=35.7

Q ss_pred             HHHHHhhcCCeEEEecCCCCChh-----hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          173 VANDIISKTWLICFDEFQVTDIA-----DAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       173 va~~~~~~~~lLc~DEf~v~d~~-----da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ++..+..++++|++|=+..+|..     -...+..++..+.+.|+.+|++|...
T Consensus       364 ~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          364 KSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            35555678999999954445654     45568888998888898887777653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.86  E-value=0.016  Score=56.44  Aligned_cols=27  Identities=22%  Similarity=0.220  Sum_probs=21.4

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +...-+.|+|++|+|||+|+-.+...+
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334558999999999999998776653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.84  E-value=0.054  Score=54.75  Aligned_cols=49  Identities=18%  Similarity=0.060  Sum_probs=37.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHH-HHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTEL-FQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l-~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+ .+.|..+|+.|..
T Consensus       148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd  198 (359)
T 3fvq_A          148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD  198 (359)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999876 7887766666655554 4568777777665

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.83  E-value=0.069  Score=56.52  Aligned_cols=49  Identities=12%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|.-
T Consensus       411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd  461 (538)
T 1yqt_A          411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD  461 (538)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46899999999999999987 79888888999999886 457666666543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.83  E-value=0.013  Score=58.93  Aligned_cols=53  Identities=19%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCCCc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGLQR  232 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl~r  232 (438)
                      +--.|+|||++......+..|.++++.-.          .-.+.+|+|||..+.++-..|..|
T Consensus       222 ~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr  284 (368)
T 3dzd_A          222 DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR  284 (368)
T ss_dssp             TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred             CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence            34679999999999887777777666421          113469999999998876655444

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=95.82  E-value=0.05  Score=67.59  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML  104 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~  104 (438)
                      ...|+.+.||+|+|||.++..++..+.. .-.++.+++=|.
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~-~~v~~nc~e~ld  683 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGR-VVVVFNCDDSFD  683 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTC-CCEEEETTSSCC
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCC-cEEEEECCCCCC
Confidence            4579999999999999999999998853 356777766543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.81  E-value=0.025  Score=60.91  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=42.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd  287 (607)
T 3bk7_A          238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD  287 (607)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            47899999999999999886 79988888999999998778777777765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.81  E-value=0.02  Score=57.69  Aligned_cols=49  Identities=22%  Similarity=0.263  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|..
T Consensus       150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd  200 (353)
T 1oxx_K          150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD  200 (353)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47899999999999999887 788888888888888865 47777777654

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=95.78  E-value=0.042  Score=50.76  Aligned_cols=48  Identities=15%  Similarity=-0.077  Sum_probs=28.9

Q ss_pred             hcCCeEEEecCCCCCh----hhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          179 SKTWLICFDEFQVTDI----ADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~----~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      .+..+|++||.|....    +....+..++..+...+.++++.|-..|.++.
T Consensus       174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~  225 (245)
T 3dkp_A          174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE  225 (245)
T ss_dssp             TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred             ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence            4578899999997521    22233445554444456667766666666554

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.78  E-value=0.03  Score=56.56  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ...-+.|+||+|+|||+|+-.+...+.. ...++.|
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~Vly   94 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAF   94 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEE
Confidence            3344899999999999999998877642 2344544

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=95.77  E-value=0.058  Score=52.91  Aligned_cols=78  Identities=15%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHH-HHHhhh-
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDI-FYESCE-   90 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~-f~~~l~-   90 (438)
                      ...+.+-..|--.+-+.|.+++..+..                       ..++.+++.+|+|+|||...-+ +...+. 
T Consensus        35 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~-----------------------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~   91 (412)
T 3fht_A           35 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEP   91 (412)
T ss_dssp             HHHHHHHHTTCCSCCHHHHHHHHHHHS-----------------------SSCCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHhc-----------------------CCCCeEEEECCCCchHHHHHHHHHHHHhhh
Confidence            345566666777889999998864422                       1246799999999999987433 333332 


Q ss_pred             cccceeeec----hhhhHHHHHHHHHH
Q psy318           91 TKQKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        91 ~~~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      ...+.++-+    .+...++++.+.++
T Consensus        92 ~~~~~~~lil~P~~~L~~q~~~~~~~~  118 (412)
T 3fht_A           92 ANKYPQCLCLSPTYELALQTGKVIEQM  118 (412)
T ss_dssp             TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence            222224433    34555555555544

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.76  E-value=0.029  Score=54.05  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=35.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+..   .+|++|..
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd  184 (263)
T 2pjz_A          138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHE  184 (263)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred             HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence            47899999999999999887 688777777777776633   55555543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.73  E-value=0.049  Score=62.09  Aligned_cols=49  Identities=16%  Similarity=0.085  Sum_probs=38.5

Q ss_pred             HHHHHhhcCCeEEEecCCC-CChhhH-HHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          173 VANDIISKTWLICFDEFQV-TDIADA-MILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       173 va~~~~~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      ++..++.+..||++||+.. +|..+. .++..++..+.+. |..+|++|...
T Consensus       861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~  912 (1022)
T 2o8b_B          861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH  912 (1022)
T ss_dssp             HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred             HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence            3566678899999999998 677663 4577889999876 88888888774

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.66  E-value=0.025  Score=60.03  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....++.++..+.+ |..+|+.|..
T Consensus       148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd  196 (538)
T 3ozx_A          148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD  196 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence            47899999999999999876 798888889999998865 7777777765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.61  E-value=0.1  Score=44.44  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      =+.|.|++|+|||+++..+ ..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            3789999999999999999 554

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=95.57  E-value=0.031  Score=59.93  Aligned_cols=46  Identities=17%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc---ccceeeechhhhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET---KQKQRVHFNKFMLDVHAKIH  111 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~---~~k~R~Hf~~fm~~v~~~l~  111 (438)
                      +-++|.|++|||||+++..+...+..   ..+.++..-......-.+|.
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~  213 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT  213 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence            56999999999999998887766631   23346665444444444443

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=95.54  E-value=0.18  Score=45.65  Aligned_cols=42  Identities=12%  Similarity=0.056  Sum_probs=30.7

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML   81 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L   81 (438)
                      .+.+...|--.+-+.|.+++..+..                         .+.+++.+|+|+|||..
T Consensus        26 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~~pTGsGKT~~   67 (224)
T 1qde_A           26 LRGVFGYGFEEPSAIQQRAIMPIIE-------------------------GHDVLAQAQSGTGKTGT   67 (224)
T ss_dssp             HHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHH
T ss_pred             HHHHHHCCCCCCcHHHHHHHHHHhc-------------------------CCCEEEECCCCCcHHHH
Confidence            3445555655789999988875321                         14699999999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.53  E-value=0.021  Score=53.54  Aligned_cols=48  Identities=10%  Similarity=0.071  Sum_probs=35.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRL-FTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..+ +..+. .|..+|++|..
T Consensus       140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~  189 (229)
T 2pze_A          140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK  189 (229)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred             HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCC
Confidence            47899999999999999987 688776666664 33333 46677777754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.52  E-value=0.044  Score=56.95  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ..|+|++|+||||+|||+|+.++...+..
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35789999999999999999999988853

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.51  E-value=0.052  Score=61.21  Aligned_cols=43  Identities=12%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             hhcCCeEEEecCCC-CChhhHHHHH-HHHHHHHH-CCCEEEEecCC
Q psy318          178 ISKTWLICFDEFQV-TDIADAMILK-RLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v-~d~~da~iL~-~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      +.+..||++||... +|+.+...+. .++..+.. .|..+|++|..
T Consensus       750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~  795 (918)
T 3thx_B          750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY  795 (918)
T ss_dssp             CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            57899999999998 7887766665 78888865 58888888876

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.49  E-value=0.046  Score=58.13  Aligned_cols=48  Identities=17%  Similarity=0.279  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+.+ |..+|+.|.+
T Consensus       490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~  538 (582)
T 3b5x_A          490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR  538 (582)
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence            47899999999999999987 688877778888888754 7777777765

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.45  E-value=0.066  Score=54.07  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      .+...-+.|+|++|+|||+|+-.+...+... ..++.|-
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi  108 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFI  108 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEE
Confidence            3445569999999999999987776655322 3355553

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.45  E-value=0.053  Score=64.73  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=28.8

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .+.+..+.|+|++|+|||+|+-.|...... ...++.|-.+
T Consensus        31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~t   70 (1706)
T 3cmw_A           31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA   70 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEe
Confidence            456678999999999999999988665432 2345555443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.42  E-value=0.045  Score=56.30  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=27.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      ....=+.|.|+||+|||.|+-.+...+....+.++-|..
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            334458999999999999988887766433344565543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.37  E-value=0.044  Score=54.67  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +...=+.|+|++|+|||.|+..+...+
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334448899999999999999998766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.34  E-value=0.11  Score=54.50  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=34.1

Q ss_pred             hcCCeEEEecCCCC------ChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQVT------DIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v~------d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+.++|+|||.-..      |+.....++.++..+.+.|+.+|+++...
T Consensus       137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~  185 (525)
T 1tf7_A          137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI  185 (525)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred             cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            56899999999763      34445678899999988898888888774

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.34  E-value=0.053  Score=54.65  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVH   98 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H   98 (438)
                      -+.|.||+|+|||+|+.++...++...+.++.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~  169 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYINQTKSYHII  169 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence            47899999999999999998877533234453

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.18  E-value=0.042  Score=54.53  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ...-+.|+|++|+|||.|+-.+...+
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            33448999999999999998877654

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=95.14  E-value=0.089  Score=51.21  Aligned_cols=46  Identities=11%  Similarity=0.061  Sum_probs=33.8

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      ...+.+-..|--.+-+.|.+++..+..                         .+.+++.+|+|+|||..+-
T Consensus        31 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~~~TGsGKT~~~~   76 (394)
T 1fuu_A           31 NLLRGVFGYGFEEPSAIQQRAIMPIIE-------------------------GHDVLAQAQSGTGKTGTFS   76 (394)
T ss_dssp             HHHHHHHHHTCCSCCHHHHHHHHHHHH-------------------------TCCEEECCCSSHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHHH
Confidence            345555566766899999998875432                         1458999999999998643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.12  E-value=0.027  Score=60.16  Aligned_cols=49  Identities=12%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+. .|..+|+.|.+.
T Consensus       501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l  550 (598)
T 3qf4_B          501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRL  550 (598)
T ss_dssp             HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCT
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence            47899999999999999887 68887777888888875 577777777763

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=95.10  E-value=0.16  Score=46.86  Aligned_cols=47  Identities=19%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      ...++|+|||.+.. +.+....+..++..+ ..+.++|+.|-..|.++.
T Consensus       172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~-~~~~~~i~~SAT~~~~~~  219 (237)
T 3bor_A          172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKL-NTSIQVVLLSATMPTDVL  219 (237)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHS-CTTCEEEEECSSCCHHHH
T ss_pred             ccCcEEEECCchHhhccCcHHHHHHHHHhC-CCCCeEEEEEEecCHHHH
Confidence            45799999999963 323333445555544 345677777777666543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.063  Score=57.84  Aligned_cols=49  Identities=8%  Similarity=0.067  Sum_probs=39.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|+.|.-
T Consensus       477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd  527 (608)
T 3j16_B          477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD  527 (608)
T ss_dssp             HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46889999999999999887 79888888889998885 457666655543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.04  E-value=0.17  Score=52.84  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++-+.|+|+.|.|||.|+..+++..
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~~~  171 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVRDH  171 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhch
Confidence            35679999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.02  E-value=0.17  Score=53.63  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=40.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+.+ |..+|+.|.+.
T Consensus       490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~  539 (582)
T 3b60_A          490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL  539 (582)
T ss_dssp             HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG
T ss_pred             HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccH
Confidence            47899999999999999987 688888888888888864 77777777663

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.96  E-value=0.096  Score=59.47  Aligned_cols=46  Identities=15%  Similarity=0.262  Sum_probs=37.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....|.+++..   .|..+|++|..
T Consensus       558 aLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd  604 (986)
T 2iw3_A          558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD  604 (986)
T ss_dssp             HHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC
Confidence            47899999999999999887 688877777777776   57777777765

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.94  E-value=0.13  Score=54.06  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHH
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .++-+-|+|..|.|||.|+..+|+
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999997

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.90  E-value=0.093  Score=55.60  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|+.|.-
T Consensus       395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd  445 (538)
T 3ozx_A          395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD  445 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999887 798888888999998865 56666655543

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=94.79  E-value=0.089  Score=51.01  Aligned_cols=46  Identities=20%  Similarity=0.158  Sum_probs=33.1

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML   81 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L   81 (438)
                      ...+.+...|--.+.+.|.+++..+-.                       ..++.+++.+++|+|||..
T Consensus       102 ~l~~~l~~~g~~~pt~iQ~~ai~~il~-----------------------~~~~~~l~~a~TGsGKT~a  147 (300)
T 3fmo_B          102 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAA  147 (300)
T ss_dssp             HHHHHHHHTTCCSCCHHHHHHHHHHTS-----------------------SSCCCEEEECCTTSSHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHc-----------------------CCCCeEEEECCCCCCccHH
Confidence            345566666777789999988753311                       1246899999999999975

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.76  E-value=0.036  Score=59.10  Aligned_cols=48  Identities=10%  Similarity=0.174  Sum_probs=38.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+.+..+. +|..+|+.|.+
T Consensus       489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~  537 (587)
T 3qf4_A          489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQK  537 (587)
T ss_dssp             HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESC
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence            47899999999999999987 68877777888887764 57777777665

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.74  E-value=0.16  Score=59.21  Aligned_cols=48  Identities=15%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|+|||.-. +|...+..+.+.+..+.. |+.+|+-+++
T Consensus       564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHr  612 (1321)
T 4f4c_A          564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR  612 (1321)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEccc
Confidence            47999999999999999886 676666777777777764 5555555555

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.72  E-value=0.046  Score=58.08  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=38.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+. .+..+|+.|.+.
T Consensus       487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l  536 (578)
T 4a82_A          487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRL  536 (578)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSG
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence            47899999999999999887 68877777888888775 456666666663

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=94.64  E-value=0.14  Score=57.01  Aligned_cols=45  Identities=13%  Similarity=0.078  Sum_probs=33.4

Q ss_pred             HhhcCCeEEEecCCC-CChhhHHH-HHHHHHHHHH-CCCEEEEecCCC
Q psy318          177 IISKTWLICFDEFQV-TDIADAMI-LKRLFTELFQ-LGVVVVATSNRA  221 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v-~d~~da~i-L~~Lfn~l~~-~g~~lV~TSN~~  221 (438)
                      .+.+..+|++||... +|+.+... +..++..+.+ .|..+|++|...
T Consensus       683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~  730 (800)
T 1wb9_A          683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  730 (800)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence            357899999999976 55544433 4678888887 488888888774

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.63  E-value=0.02  Score=50.10  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-++|.|++|+|||+++.++...+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35699999999999999999988774

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.61  E-value=0.025  Score=49.86  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-|+|.|++|+|||+++.++...+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            45699999999999999999987763

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.61  E-value=0.066  Score=57.49  Aligned_cols=45  Identities=22%  Similarity=0.123  Sum_probs=29.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE  112 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~  112 (438)
                      =.+|+||||||||+.+-.+...+- .++.|+-.    |.....+.++|+.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~TN~AvD~i~erL~~  255 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAPSNIAVDNLVERLAL  255 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcCchHHHHHHHHHHHh
Confidence            368999999999986655544442 22345533    6667777666654

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=94.58  E-value=0.84  Score=52.59  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318           12 SKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus        12 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      -..++...+.-.+.+-|.|.+++..+-.   .+..                ..|..+++.|++|+|||..+-
T Consensus       590 ~~~~~~~~~~f~~~~t~~Q~~ai~~il~---~~~~----------------g~p~d~ll~~~TGsGKT~val  642 (1151)
T 2eyq_A          590 REQYQLFCDSFPFETTPDQAQAINAVLS---DMCQ----------------PLAMDRLVCGDVGFGKTEVAM  642 (1151)
T ss_dssp             HHHHHHHHHTCCSCCCHHHHHHHHHHHH---HHHS----------------SSCCEEEEECCCCTTTHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHH---HHhc----------------CCcCcEEEECCCCCCHHHHHH
Confidence            4556777777788899999998876544   2221                235689999999999997754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.55  E-value=0.022  Score=50.22  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++.++|.|++|+|||++...+...+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56799999999999999999988763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.51  E-value=0.023  Score=49.46  Aligned_cols=25  Identities=16%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-+.|.|++|+|||+|+.++...+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999988764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.49  E-value=0.11  Score=53.17  Aligned_cols=37  Identities=16%  Similarity=0.028  Sum_probs=26.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .=+.|.|+||+|||.|+--+...+....+.++-|-.+
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            3488999999999999887776665433455666444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.39  E-value=0.024  Score=48.96  Aligned_cols=24  Identities=8%  Similarity=-0.045  Sum_probs=21.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =|.|.|++|+|||+++..+...+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.38  E-value=0.11  Score=51.57  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=26.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .+-+.|.|++|+|||+|+.++...++. ....+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i  204 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISI  204 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEE
Confidence            356899999999999999999887753 3344544

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.37  Score=54.84  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318           19 LSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVH   98 (438)
Q Consensus        19 v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H   98 (438)
                      ...-.+.+++.|.+++..+..                         .+.+++.+|+|+|||...-+..... ...+.|+-
T Consensus        80 ~~~~~f~L~~~Q~eai~~l~~-------------------------g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL  133 (1010)
T 2xgj_A           80 ARTYPFTLDPFQDTAISCIDR-------------------------GESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVI  133 (1010)
T ss_dssp             SCCCSSCCCHHHHHHHHHHHH-------------------------TCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEE
T ss_pred             HHhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEECCCCCChHHHHHHHHHHH-hccCCeEE
Confidence            345567899999999987532                         1469999999999999764432222 12344555


Q ss_pred             c----hhhhHHHHHHHHH
Q psy318           99 F----NKFMLDVHAKIHE  112 (438)
Q Consensus        99 f----~~fm~~v~~~l~~  112 (438)
                      |    -..+.+.++.+.+
T Consensus       134 ~l~PtkaLa~Q~~~~l~~  151 (1010)
T 2xgj_A          134 YTSPIKALSNQKYRELLA  151 (1010)
T ss_dssp             EEESSHHHHHHHHHHHHH
T ss_pred             EECChHHHHHHHHHHHHH
Confidence            4    2344444444443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.28  E-value=0.09  Score=53.76  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +...=+.|+|++|+|||+|+..+.-.+
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence            344558899999999999999765333

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.23  E-value=0.031  Score=49.83  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ++-++|.|++|+|||++..++...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999999999999876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.03  E-value=0.034  Score=50.17  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=23.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++-++|.|++|+|||+|+.++...+.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3456799999999999999999988773

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.41  Score=54.98  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceee
Q psy318           18 KLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV   97 (438)
Q Consensus        18 ~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~   97 (438)
                      +...+.+.+++.|.+|+..+..                         .+.+++.|++|+|||...-+.....- ..+.|+
T Consensus       177 ~~~~~~f~ltp~Q~~AI~~i~~-------------------------g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rv  230 (1108)
T 3l9o_A          177 EARTYPFTLDPFQDTAISCIDR-------------------------GESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRV  230 (1108)
T ss_dssp             CSSCCSSCCCHHHHHHHHHHTT-------------------------TCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEE
T ss_pred             HHHhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEECCCCCChHHHHHHHHHHHH-hcCCeE
Confidence            3556778899999999886511                         25799999999999987654433221 234455


Q ss_pred             ec----hhhhHHHHHHHHH
Q psy318           98 HF----NKFMLDVHAKIHE  112 (438)
Q Consensus        98 Hf----~~fm~~v~~~l~~  112 (438)
                      -|    -..+..+++.+.+
T Consensus       231 lvl~PtraLa~Q~~~~l~~  249 (1108)
T 3l9o_A          231 IYTSPIKALSNQKYRELLA  249 (1108)
T ss_dssp             EEEESSHHHHHHHHHHHHH
T ss_pred             EEEcCcHHHHHHHHHHHHH
Confidence            54    2344444444444

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=93.98  E-value=1.3  Score=47.74  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318           13 KQYYEKLSNNEI-QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        13 ~~Y~~~v~~g~l-~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      ....+.+...++ .+.+.|.+++..+      +                  ...+.+++.||+|+|||..+-++.
T Consensus        17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~------~------------------~~~~~~lv~apTGsGKT~~~~l~i   67 (715)
T 2va8_A           17 SNVIEIIKKRGIKKLNPPQTEAVKKG------L------------------LEGNRLLLTSPTGSGKTLIAEMGI   67 (715)
T ss_dssp             HHHHHHHHTTSCCBCCHHHHHHHHTT------T------------------TTTCCEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHH------h------------------cCCCcEEEEcCCCCcHHHHHHHHH
Confidence            345555666666 7899999987631      0                  113679999999999999875553

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=93.96  E-value=0.089  Score=56.43  Aligned_cols=45  Identities=24%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIH  111 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~  111 (438)
                      -.+|+||||||||+++-.+...+....+.|+-.    |.....+.+++.
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence            478999999999998877766654323456654    455555555554

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=93.89  E-value=0.069  Score=46.76  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=+.|.|++|+|||+++..+...+.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4589999999999999999988775

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.82  E-value=0.037  Score=48.83  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|+-++|.|++|+|||+++..+...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            356689999999999999999988763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.75  E-value=0.042  Score=48.88  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++=+.|.||+|+|||.|++++....+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35589999999999999999987653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=93.75  E-value=0.46  Score=55.27  Aligned_cols=48  Identities=13%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|...+..+...+..+. .|+.+|+.|.+
T Consensus       536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~  584 (1284)
T 3g5u_A          536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHR  584 (1284)
T ss_dssp             HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            57899999999999999887 68776777777777665 57777777766

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.71  E-value=0.19  Score=55.58  Aligned_cols=43  Identities=14%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCC
Q psy318          178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +.+.++|++||... +..-|...+ ..+++.+.+.|..+|++|..
T Consensus       653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~  697 (765)
T 1ewq_A          653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY  697 (765)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            67899999999965 333332222 34555555567788888876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.70  E-value=0.05  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=22.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      -|.|.|++|+|||+++..+...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999998885

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=93.62  E-value=1.6  Score=45.21  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=31.0

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+.+...|--.+-|.|.+++..+-.                       ...+.+++.+|+|+|||...
T Consensus        84 ~~~l~~~g~~~~~~~Q~~~i~~~l~-----------------------~~~~~~lv~apTGsGKTl~~  128 (563)
T 3i5x_A           84 HKAITRMEFPGLTPVQQKTIKPILS-----------------------SEDHDVIARAKTGTGKTFAF  128 (563)
T ss_dssp             HHHHHTTCCSSCCHHHHHHHHHHHS-----------------------SSSEEEEEECCTTSCHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhc-----------------------CCCCeEEEECCCCCCccHHH
Confidence            3444445555589999988764320                       12468999999999999743

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.62  E-value=0.56  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +-+.|.|++|+|||+++-++..
T Consensus       110 ~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999997776643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.58  E-value=0.094  Score=53.50  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|......+..++..+. .+..+|+++..
T Consensus       165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd  213 (390)
T 3gd7_A          165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR  213 (390)
T ss_dssp             HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSS
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence            57899999999999999876 78776666777776653 45666666665

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=93.57  E-value=0.12  Score=55.87  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhhhc
Q psy318           14 QYYEKLSNNEI-QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESCET   91 (438)
Q Consensus        14 ~Y~~~v~~g~l-~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l~~   91 (438)
                      .+.+.+...++ .+.+.|.+++..+      +                  ...+.+++.||+|+|||..+-+.. ..+..
T Consensus        11 ~~~~~l~~~g~~~l~~~Q~~~i~~~------~------------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~   66 (720)
T 2zj8_A           11 RIKSTLKERGIESFYPPQAEALKSG------I------------------LEGKNALISIPTASGKTLIAEIAMVHRILT   66 (720)
T ss_dssp             HHHHHHHHTTCCBCCHHHHHHHTTT------G------------------GGTCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHH------h------------------cCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence            34445554555 7899999887630      0                  113679999999999998774443 33321


Q ss_pred             ccceeeec----hhhhHHHHHHH
Q psy318           92 KQKQRVHF----NKFMLDVHAKI  110 (438)
Q Consensus        92 ~~k~R~Hf----~~fm~~v~~~l  110 (438)
                       .+.++-|    -..+.++.+++
T Consensus        67 -~~~~~l~i~P~raLa~q~~~~~   88 (720)
T 2zj8_A           67 -QGGKAVYIVPLKALAEEKFQEF   88 (720)
T ss_dssp             -HCSEEEEECSSGGGHHHHHHHT
T ss_pred             -CCCEEEEEcCcHHHHHHHHHHH
Confidence             1234433    34555555555

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.49  E-value=0.05  Score=47.59  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++-+.|.|++|+|||+|+.++...+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            3458999999999999999997765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.46  E-value=0.041  Score=47.75  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +=+.|.|++|+|||+++..+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999976

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=93.42  E-value=0.11  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=19.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .+-..|.|++|+|||+++....+
T Consensus       161 ~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          161 AKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Confidence            35578999999999999977654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.40  E-value=0.052  Score=49.14  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .++-++|.|++|+|||.|+..+...++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456799999999999999999988764

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=93.31  E-value=0.36  Score=49.35  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=29.1

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDL  225 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L  225 (438)
                      +.+..+|++||.|..+..... ...++..+.. ....+|+.|-.+|...
T Consensus        97 ~~~l~~vViDEah~~~~~~~~-~~~~~~~~~~~~~~~~l~~SAT~~~~~  144 (440)
T 1yks_A           97 VVNWEVIIMDEAHFLDPASIA-ARGWAAHRARANESATILMTATPPGTS  144 (440)
T ss_dssp             CCCCSEEEETTTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred             ccCccEEEEECccccCcchHH-HHHHHHHHhccCCceEEEEeCCCCchh
Confidence            467899999999998644322 2233333333 4566777666665544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.31  E-value=0.051  Score=48.82  Aligned_cols=25  Identities=28%  Similarity=0.658  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++=|.|.|++|+|||+|+..+...+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999998776

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.31  E-value=0.045  Score=48.35  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ++-+.|.|++|+|||+|+.++...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            445899999999999999999765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.30  E-value=0.047  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.|++|+|||+++..+...+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999987663

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.29  E-value=0.054  Score=48.83  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=22.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++=+.|.|++|+|||.|+.++...+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45569999999999999999998766

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.29  E-value=0.049  Score=47.21  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-+.|.|++|+|||+++..+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.28  E-value=0.26  Score=55.34  Aligned_cols=27  Identities=30%  Similarity=0.431  Sum_probs=22.6

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++-+-|+|+.|.|||.|+..+|+..
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~  171 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRDH  171 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence            345668899999999999999988764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.27  E-value=0.055  Score=48.24  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .=+.|.||+|+|||+|+.++...+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            447899999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.22  E-value=0.04  Score=48.26  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=18.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.-++|.|++|+|||+++..+...+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45689999999999999999987764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.15  E-value=0.053  Score=47.61  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.-|.|.|++|||||+++..+...+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34589999999999999999987663

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.06  E-value=0.059  Score=46.88  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-++|.|++|||||.+..++...+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999988764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.05  E-value=0.052  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      |.|.|++|+|||+++..+...+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.04  E-value=0.058  Score=48.95  Aligned_cols=26  Identities=23%  Similarity=0.604  Sum_probs=21.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.||+|+|||.|+.++....+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            45689999999999999999976553

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.03  E-value=0.07  Score=47.87  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=23.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.-|.|.|++|+|||+++..+...+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345599999999999999999988764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.01  E-value=0.056  Score=47.40  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-++|.|++|+|||++..++...+.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999988774

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=93.01  E-value=0.38  Score=49.74  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .|+=+.+.|++|+|||+++..+...+. +.+.++.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVll  130 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGL  130 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence            356789999999999999999988885 34556655

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.99  E-value=0.057  Score=47.48  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .-+.|.|++|||||+++..+...+
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999998766

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=92.97  E-value=0.062  Score=48.43  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.=+.|.|++|+|||+|+.++...+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455689999999999999999988886

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=92.95  E-value=0.065  Score=47.30  Aligned_cols=26  Identities=15%  Similarity=0.324  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.|++|||||+++..+...+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45699999999999999999987763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=92.90  E-value=0.063  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.=+.|.|++|+|||+|+.++...+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4458899999999999999998766

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.90  E-value=0.062  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=26.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .=+.|.||.|+|||+|+.++...++  ..-.+.+..+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l~--~~G~V~~~g~   68 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGIG--HQGNVKSPTY   68 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT--CCSCCCCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC--CCCeEEECCE
Confidence            3488999999999999999988874  3345555543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.89  E-value=0.064  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++=+.|.||+|+|||.|+.++...++
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            44589999999999999999987764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=92.89  E-value=0.59  Score=45.58  Aligned_cols=38  Identities=13%  Similarity=0.075  Sum_probs=25.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      ...=+.|.|+||+|||.|+--+...+... ..++-|-.+
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~sl  104 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL  104 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence            33448999999999998877776554332 245666444

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.88  E-value=0.059  Score=48.96  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .-+.|.|++|||||+|+.++...+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999998765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.85  E-value=0.061  Score=47.66  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+++.++...+.
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEECCCccCHHHHHHHHHHhcC
Confidence            78999999999999999988774

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=92.83  E-value=0.061  Score=47.93  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=22.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +=|.|.|++|+|||+++..+...+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            34899999999999999999988753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=92.79  E-value=0.07  Score=54.16  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=24.8

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+.++.+.|+||+|+|||+|+.++...+
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34567889999999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.78  E-value=0.07  Score=48.73  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.-++|.|++|+|||+++..+...+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346699999999999999999988774

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.75  E-value=0.072  Score=46.92  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      -|.|.|++|+|||++...+...+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999988764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=92.74  E-value=0.063  Score=47.03  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.|++|||||+++..+...+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999987663

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=92.73  E-value=0.065  Score=49.09  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=21.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.|.|.||+|+|||.|++.+....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999987654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.67  E-value=0.067  Score=46.98  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+++..+...+.
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999988763

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=92.57  E-value=0.18  Score=48.72  Aligned_cols=27  Identities=30%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.-++|.|++|+|||+|+..+...++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999987663

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.56  E-value=0.072  Score=46.01  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+++..+...+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=92.56  E-value=0.073  Score=47.10  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++=+.|.|++|+|||+++..+...+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35699999999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.55  E-value=0.078  Score=49.38  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .|.=+.|.|++|+|||+|+.++...+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998665

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=92.52  E-value=0.28  Score=55.67  Aligned_cols=67  Identities=12%  Similarity=0.235  Sum_probs=42.5

Q ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ..-.+.+|+.|.+++..+..                         .+.+++.|++|+|||...-.....+. ..+.++-|
T Consensus        34 ~~~~f~l~~~Q~~aI~~il~-------------------------g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlv   87 (997)
T 4a4z_A           34 RSWPFELDTFQKEAVYHLEQ-------------------------GDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIY   87 (997)
T ss_dssp             CCCSSCCCHHHHHHHHHHHT-------------------------TCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEE
T ss_pred             HhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEE
Confidence            34457799999998875422                         25799999999999975443333221 12233333


Q ss_pred             ----hhhhHHHHHHHHH
Q psy318          100 ----NKFMLDVHAKIHE  112 (438)
Q Consensus       100 ----~~fm~~v~~~l~~  112 (438)
                          -..+.++++.+.+
T Consensus        88 l~PtraLa~Q~~~~l~~  104 (997)
T 4a4z_A           88 TSPIKALSNQKFRDFKE  104 (997)
T ss_dssp             EESCGGGHHHHHHHHHT
T ss_pred             EeCCHHHHHHHHHHHHH
Confidence                4567777666654

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=92.50  E-value=0.44  Score=48.47  Aligned_cols=49  Identities=14%  Similarity=0.034  Sum_probs=29.9

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      +.+..+|++||.|..+......+..+.......+..+|+.|-.+|..+.
T Consensus        91 ~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~  139 (431)
T 2v6i_A           91 VPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTE  139 (431)
T ss_dssp             CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred             ccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence            4578999999999986433232333333323345677777777665543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=92.42  E-value=0.072  Score=46.53  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      =..|+|+.|+|||.|++++.-.+
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997766

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.40  E-value=0.12  Score=45.74  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .+.-++|.|.+|+|||+++..+...+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3456899999999999999999988853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.31  E-value=0.085  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++-|.|.|++|||||+++..+...+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34568999999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.24  E-value=0.089  Score=47.11  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++=|.|.|++|+|||+++.++...+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45589999999999999999988764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=92.24  E-value=0.093  Score=46.99  Aligned_cols=26  Identities=15%  Similarity=0.068  Sum_probs=22.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.=|.|.|++|+|||+++..+...+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45599999999999999999988774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.23  E-value=0.11  Score=47.08  Aligned_cols=38  Identities=21%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhc--ccceeeechhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCET--KQKQRVHFNKF  102 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~--~~k~R~Hf~~f  102 (438)
                      +.=+-|.|++|+|||+|+.++...++.  +....++...|
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            345789999999999999999887752  12455666554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.23  E-value=0.095  Score=48.47  Aligned_cols=27  Identities=15%  Similarity=0.138  Sum_probs=23.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.-|.|.|++|+|||+++.++...+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345699999999999999999988774

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.18  E-value=0.094  Score=47.79  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.-+.|.|++|+|||+++..+...+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45689999999999999999988764

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=92.17  E-value=0.57  Score=47.83  Aligned_cols=49  Identities=16%  Similarity=0.106  Sum_probs=30.3

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      +.+.++|+|||.|..+......+..+.......+..+|+.|-.+|....
T Consensus       108 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~  156 (451)
T 2jlq_A          108 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD  156 (451)
T ss_dssp             CCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred             ccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccch
Confidence            4578999999999886543333322333333345677777777666443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.14  E-value=0.082  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.198  Sum_probs=21.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =..|+|+.|+|||.|++++.-.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            357999999999999999987764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=92.12  E-value=0.099  Score=48.40  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .++-+.|.||+|+|||.|++++....+
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            356789999999999999999987654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=92.12  E-value=0.18  Score=45.49  Aligned_cols=26  Identities=27%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.=+-|.|++|+|||+|+.++...++
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34588999999999999999988764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=92.10  E-value=0.2  Score=45.84  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ++++|++|||||.++-.+...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999998877644

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.99  E-value=1  Score=52.39  Aligned_cols=48  Identities=13%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|++||--. +|...+..+.+++..+. .|..+|+.|.+
T Consensus      1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~ 1229 (1284)
T 3g5u_A         1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHR 1229 (1284)
T ss_dssp             HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence            57899999999999999987 68877777888887653 46555555554

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.98  E-value=0.095  Score=48.86  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .++=+.|.||.|+|||+|+.++....+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            345688999999999999999987664

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=91.94  E-value=0.12  Score=45.88  Aligned_cols=50  Identities=18%  Similarity=0.119  Sum_probs=35.8

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .......+.+.+-+.|.+++..+-.                         .+.++|.+|+|+|||.++-+.....
T Consensus        23 ~~~~~~~~~~~l~~~Q~~~i~~~~~-------------------------~~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           23 AARASPEPELQLRPYQMEVAQPALE-------------------------GKNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             HHHTCCSCCCCCCHHHHHHHHHHHT-------------------------TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             hcccCccCCCCchHHHHHHHHHHhc-------------------------CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence            3344455678889999998874321                         1469999999999999887665443

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=91.91  E-value=0.21  Score=55.47  Aligned_cols=46  Identities=24%  Similarity=0.235  Sum_probs=29.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE  112 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~  112 (438)
                      -++|.||||||||+++-.+...+....+.|+-.    |.....+.+++.+
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~  426 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD  426 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence            478999999999988776655553212345543    4555566555544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=91.84  E-value=0.091  Score=46.54  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.4

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|.|++|+|||+|+.++..
T Consensus         5 i~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            67899999999999999965

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.80  E-value=0.087  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      -+.|.|++|+|||+++.++.. +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            378999999999999999987 5

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.79  E-value=0.096  Score=48.06  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.-+.|.|++|+|||+++..+...+.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45699999999999999999987663

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=91.79  E-value=0.76  Score=49.23  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++|.|.+|+|||.++..+..++
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sL  238 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSI  238 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHH
Confidence            569999999999999999887766

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=91.74  E-value=0.65  Score=48.05  Aligned_cols=39  Identities=8%  Similarity=-0.006  Sum_probs=27.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      ...-+.|.|+||+|||.|+--+...+....+.++-|-.+
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~  279 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML  279 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence            334488999999999999877766664333455666444

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=91.72  E-value=0.11  Score=46.31  Aligned_cols=25  Identities=24%  Similarity=0.060  Sum_probs=22.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++=|.|.|++|+|||+++..+...+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999998876

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=91.66  E-value=0.71  Score=49.56  Aligned_cols=48  Identities=17%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL  225 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L  225 (438)
                      +.+.++|+|||.|..+......+..+...+.....++|+.|-.+|...
T Consensus       275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~  322 (618)
T 2whx_A          275 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGST  322 (618)
T ss_dssp             CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCC
T ss_pred             ccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCchhh
Confidence            467899999999998765544555566665545677777777776654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=91.59  E-value=0.27  Score=54.56  Aligned_cols=45  Identities=24%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIH  111 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~  111 (438)
                      -.+|+||||||||+++-.+...+....+.|+-.    |.....+.+++.
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~  421 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH  421 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence            478999999999998887766664323456644    445555555443

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.58  E-value=0.083  Score=49.72  Aligned_cols=28  Identities=32%  Similarity=0.479  Sum_probs=23.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|.-++|.|++|+|||+++..+...+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456799999999999999999987764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=91.57  E-value=0.092  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.604  Sum_probs=19.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||+++.++..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999965

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=91.49  E-value=0.39  Score=42.53  Aligned_cols=46  Identities=15%  Similarity=0.039  Sum_probs=33.1

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDI   84 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~   84 (438)
                      ..+.+-..|--.+-+.|.+++..+-.                         .+.+++.+|+|+|||...-+
T Consensus        12 l~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~li~~~TGsGKT~~~~~   57 (207)
T 2gxq_A           12 ILEALHGRGLTTPTPIQAAALPLALE-------------------------GKDLIGQARTGTGKTLAFAL   57 (207)
T ss_dssp             HHHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHcC-------------------------CCCEEEECCCCChHHHHHHH
Confidence            34455556666889999998875321                         14699999999999986433

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=91.48  E-value=0.11  Score=46.76  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=+-|.|+.|+|||+|+.++...+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3477999999999999999987654

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=91.40  E-value=0.51  Score=45.57  Aligned_cols=50  Identities=18%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF   85 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f   85 (438)
                      ...+.+...|--.+.|.|.+++..+-.                       ..++.+++.+|+|+|||...-+.
T Consensus        15 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~-----------------------~~~~~~lv~a~TGsGKT~~~~~~   64 (395)
T 3pey_A           15 ELLKGIYAMKFQKPSKIQERALPLLLH-----------------------NPPRNMIAQSQSGTGKTAAFSLT   64 (395)
T ss_dssp             HHHHHHHHTTCCSCCHHHHHHHHHHHC-----------------------SSCCCEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHc-----------------------CCCCeEEEECCCCCcHHHHHHHH
Confidence            556677778888899999998865421                       12468999999999999865443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.28  E-value=0.73  Score=45.19  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .|+=+.|.|++|+|||+++..+...+.. ...++.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~l  137 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVL  137 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEE
Confidence            3455889999999999999999887753 3445554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.27  E-value=0.11  Score=46.70  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=21.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.=+.|.|++|+|||+|+.++...+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3448899999999999999997755

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=91.26  E-value=0.13  Score=48.24  Aligned_cols=29  Identities=17%  Similarity=0.402  Sum_probs=24.5

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ...|+-|+|.||||+|||+++..+...+.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34567899999999999999999987663

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.17  E-value=0.13  Score=48.19  Aligned_cols=27  Identities=22%  Similarity=0.111  Sum_probs=23.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.-|.|.|++|+|||+++..+...+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            355699999999999999999987663

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.15  E-value=0.68  Score=47.67  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=25.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .=+.|.|+||+|||.|+--+...+... +.++-|-.+
T Consensus       198 ~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl  233 (444)
T 3bgw_A          198 NFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL  233 (444)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence            348999999999998877766655433 456766544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=91.14  E-value=0.16  Score=48.10  Aligned_cols=26  Identities=15%  Similarity=0.110  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.=|+|.|++|+|||+++..+...+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            34589999999999999999988764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.08  E-value=0.14  Score=45.03  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.-+.|.|++|+|||+++.++...+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34588999999999999999988774

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=91.01  E-value=0.13  Score=47.31  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .++=+.|.||.|+|||.|++++....+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345588999999999999999977553

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=91.00  E-value=0.15  Score=47.09  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=17.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -.+++|+||+|||++|-.+...
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999998665433

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=90.98  E-value=0.13  Score=46.82  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.|.|++|+|||+++..+...+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998766

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=90.97  E-value=0.13  Score=46.90  Aligned_cols=43  Identities=19%  Similarity=0.236  Sum_probs=29.5

Q ss_pred             hcCCeEEEecCCCC-----Chh-hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQVT-----DIA-DAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-----d~~-da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ..++++++|.+...     +.. ...++..|.+...+.++.+|+|+...
T Consensus       134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~  182 (251)
T 2zts_A          134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP  182 (251)
T ss_dssp             TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence            35789999988753     221 13356666777778899999988753

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=90.95  E-value=1  Score=51.86  Aligned_cols=24  Identities=33%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .+=+-|+|+.|.|||.|+..+|+.
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~d  173 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCLS  173 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHHh
Confidence            466899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=90.88  E-value=0.13  Score=48.62  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=21.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      -+.|.|++|+|||.|+..+...+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            478999999999999999987663

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=90.87  E-value=0.13  Score=47.14  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=..|+|+.|+|||.|++++.-.+-
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3468999999999999999987774

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=90.86  E-value=0.13  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+++..+...+.
T Consensus         3 I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999987763

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.85  E-value=0.13  Score=46.98  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-+.|.|++|+|||+++.++...+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999988773

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=90.74  E-value=0.16  Score=46.07  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=23.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.|++|+|||.++.++...+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45588999999999999999988875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=90.69  E-value=0.14  Score=45.31  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .|.-+.|.|++|||||++..++...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3556999999999999999999764

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=90.57  E-value=0.93  Score=40.86  Aligned_cols=76  Identities=11%  Similarity=0.035  Sum_probs=45.8

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhhh-
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESCE-   90 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l~-   90 (438)
                      ...+.+...|-..+-+.|.+++..+..                         .+.+++.+++|+|||...-+. ...+. 
T Consensus        14 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~   68 (219)
T 1q0u_A           14 FIIEAIKTLRFYKPTEIQERIIPGALR-------------------------GESMVGQSQTGTGKTHAYLLPIMEKIKP   68 (219)
T ss_dssp             HHHHHHHHTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence            344556666777889999999875432                         146899999999999864332 23322 


Q ss_pred             cccceeeec----hhhhHHHHHHHHHH
Q psy318           91 TKQKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        91 ~~~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      ...+.++-+    .+.+.++++.+.+.
T Consensus        69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~   95 (219)
T 1q0u_A           69 ERAEVQAVITAPTRELATQIYHETLKI   95 (219)
T ss_dssp             TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence            122334444    34455555554444

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=90.55  E-value=2.7  Score=43.93  Aligned_cols=44  Identities=14%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318           17 EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus        17 ~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      .+-..|--.+-|.|.+++..+-.                       ...+.+++.+|+|+|||...-
T Consensus        35 ~l~~~g~~~~~~~Q~~~i~~il~-----------------------~~~~dvlv~apTGsGKTl~~~   78 (579)
T 3sqw_A           35 AITRMEFPGLTPVQQKTIKPILS-----------------------SEDHDVIARAKTGTGKTFAFL   78 (579)
T ss_dssp             HHHTTTCSSCCHHHHHHHHHHHC-----------------------SSSEEEEEECCTTSCHHHHHH
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHc-----------------------cCCCeEEEEcCCCcHHHHHHH
Confidence            33344444589999988764320                       124689999999999998433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.42  E-value=0.5  Score=55.20  Aligned_cols=48  Identities=13%  Similarity=0.289  Sum_probs=35.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.+++++++|++||--. +|...+..+.+.+..++. |+.+|+-+.|
T Consensus      1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHR 1275 (1321)
T 4f4c_A         1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHR 1275 (1321)
T ss_dssp             HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSS
T ss_pred             HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEeccC
Confidence            57999999999999999876 576666666666666553 5555555555

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=90.10  E-value=0.19  Score=49.65  Aligned_cols=28  Identities=21%  Similarity=0.301  Sum_probs=23.3

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++.+-+-|.||+|+|||+|+.++..-+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3444558899999999999999997765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.01  E-value=0.18  Score=44.78  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=21.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      -+.|.|++|+|||.+..++...+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            488999999999999999988764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=90.00  E-value=0.1  Score=47.94  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=15.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHH-Hhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY-ESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~-~~l   89 (438)
                      ++=+.|.||.|+|||+|+.++. ..+
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4458899999999999999998 554

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=89.95  E-value=0.88  Score=46.60  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~  226 (438)
                      +.+.++|+|||.|..+... +....++..+.. ....+|+.|-.+|..+.
T Consensus       110 l~~~~~iViDEaH~~~~~~-~~~~~~~~~~~~~~~~~~il~SAT~~~~~~  158 (459)
T 2z83_A          110 VPNYNLFVMDEAHFTDPAS-IAARGYIATKVELGEAAAIFMTATPPGTTD  158 (459)
T ss_dssp             CCCCSEEEESSTTCCSHHH-HHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred             ccCCcEEEEECCccCCchh-hHHHHHHHHHhccCCccEEEEEcCCCcchh
Confidence            4578999999999876432 223333333332 45678887877776654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=89.87  E-value=0.19  Score=45.93  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .-+.|.|++|||||++...+...+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            358899999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=89.66  E-value=0.23  Score=45.02  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +=+-|.||.|+|||+|+.++..-+
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            348899999999999999997765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=89.60  E-value=0.19  Score=46.97  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.=|.|.|++|||||++...+...+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            44589999999999999999988764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.44  E-value=0.21  Score=45.50  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|++|+|||+|+.++...+.
T Consensus         4 i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHHhhcc
Confidence            67999999999999999988775

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}

Probab=89.44  E-value=1.5  Score=47.59  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY  226 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~  226 (438)
                      +.+..+|++||.|..+......+ ..+..+.. ....+|+.|-.+|..+.
T Consensus       330 l~~l~lvViDEaH~~~~~~~~~~-~~l~~~~~~~~~~vl~~SAT~~~~i~  378 (673)
T 2wv9_A          330 VPNYNLFVMDEAHFTDPASIAAR-GYIATRVEAGEAAAIFMTATPPGTSD  378 (673)
T ss_dssp             CCCCSEEEEESTTCCCHHHHHHH-HHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred             cccceEEEEeCCcccCccHHHHH-HHHHHhccccCCcEEEEcCCCChhhh
Confidence            46789999999999865433322 33333333 55677777777766544

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=89.44  E-value=0.19  Score=52.88  Aligned_cols=27  Identities=15%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.++.|.||+|+|||+|+.++...++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456799999999999999999988774

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=89.37  E-value=0.48  Score=46.02  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.=+-|.|++|+|||+|+.++...+.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            44578999999999999999988775

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=89.34  E-value=0.19  Score=49.55  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=0.0

Q ss_pred             EEEccCCCCHhHHHHHHHHhh
Q psy318           69 YIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        69 yL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .|+||.|+|||.|+++++-.+
T Consensus        27 ~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEECCTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHh

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=89.28  E-value=0.21  Score=46.18  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.||||+|||+++..+.....
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            68899999999999999987664

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=89.13  E-value=0.4  Score=41.81  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .-+.|.|++|+|||.|+..+...
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=89.05  E-value=0.23  Score=46.28  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +-|.||.|+|||+|+.++...+
T Consensus        28 igI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           28 IGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7799999999999999997765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.04  E-value=0.26  Score=47.04  Aligned_cols=26  Identities=31%  Similarity=0.546  Sum_probs=22.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-+.|.|++|+|||+|+.++...+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45699999999999999999988763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=88.90  E-value=0.19  Score=46.49  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             HHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      .+|+.++.++++|++||-...   ....+..++..+ ..|..+| +|.
T Consensus       114 ~lAraL~~~p~lllLDEPts~---~~~~l~~~l~~l-~~g~tii-vtH  156 (208)
T 3b85_A          114 AYMRGRTLNDAFVILDEAQNT---TPAQMKMFLTRL-GFGSKMV-VTG  156 (208)
T ss_dssp             GGGTTCCBCSEEEEECSGGGC---CHHHHHHHHTTB-CTTCEEE-EEE
T ss_pred             HHHHHHhcCCCEEEEeCCccc---cHHHHHHHHHHh-cCCCEEE-EEC
Confidence            457888889999999998887   445567777777 6677666 443

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=88.89  E-value=1.9  Score=39.22  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhh-hcc
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESC-ETK   92 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l-~~~   92 (438)
                      .+.+-..|--.+-+.|.+++..+..                         .+.+++.+++|+|||...-+. ...+ ...
T Consensus        36 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~   90 (230)
T 2oxc_A           36 LEGLRAAGFERPSPVQLKAIPLGRC-------------------------GLDLIVQAKSGTGKTCVFSTIALDSLVLEN   90 (230)
T ss_dssp             HHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCcHHHHHHHHHHHHHHhcC
Confidence            3344444444489999998874311                         256999999999999864332 2333 222


Q ss_pred             cceeeec----hhhhHHHHHHHHHH
Q psy318           93 QKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        93 ~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      .+.|+-|    .+....+++.+.+.
T Consensus        91 ~~~~~lil~Pt~~L~~q~~~~~~~~  115 (230)
T 2oxc_A           91 LSTQILILAPTREIAVQIHSVITAI  115 (230)
T ss_dssp             CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHH
Confidence            2345544    34455555555443

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=88.85  E-value=0.54  Score=45.76  Aligned_cols=26  Identities=8%  Similarity=-0.110  Sum_probs=22.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.-.+|||+.|.||+..++.+...+.
T Consensus        18 ~~~yl~~G~e~~~~~~~~~~l~~~~~   43 (343)
T 1jr3_D           18 RAAYLLLGNDPLLLQESQDAVRQVAA   43 (343)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHH
Confidence            45677899999999999999988774

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=88.79  E-value=0.24  Score=46.63  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .-+-|.|+.|+|||+|+.++...+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            348999999999999999998766

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=88.61  E-value=0.28  Score=46.35  Aligned_cols=32  Identities=19%  Similarity=0.490  Sum_probs=0.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      +-|.||.|+|||+|+.++..-++ +..-.+.|.
T Consensus        27 ~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~   58 (240)
T 2onk_A           27 CVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLN   58 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC-CSEEEEEET
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=88.48  E-value=0.26  Score=50.64  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             CCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           65 PKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +.| +.|.||+|+|||+|+.++...++.. ..++.+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~  200 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT  200 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence            445 6899999999999999998887533 344544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.47  E-value=0.22  Score=62.81  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=0.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      .++|+|.||+|||||+++..+...++...-.+++|+.
T Consensus      1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~ 1340 (3245)
T 3vkg_A         1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS 1340 (3245)
T ss_dssp             TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.46  E-value=0.26  Score=46.33  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd  198 (240)
T 1ji0_A          149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN  198 (240)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            47899999999999999987 79888888999999887777767776654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.44  E-value=0.22  Score=46.70  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=22.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++++.|.|++|+|||.|+-.+....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            35899999999999999998886544

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=88.40  E-value=0.77  Score=41.62  Aligned_cols=43  Identities=16%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+.+.+.|-..+-+.|.+++..+..                         .+.+++.+|+|+|||...
T Consensus        32 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~l~~apTGsGKT~~~   74 (228)
T 3iuy_A           32 LKSIIRVGILKPTPIQSQAWPIILQ-------------------------GIDLIVVAQTGTGKTLSY   74 (228)
T ss_dssp             HHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHH
Confidence            3444555656788999888764321                         246899999999999753

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=88.36  E-value=0.88  Score=41.42  Aligned_cols=44  Identities=16%  Similarity=0.046  Sum_probs=31.6

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      ..+.+-..|--.+-+.|.+++..+..                         .+.+++.+|+|+|||...
T Consensus        36 l~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~li~a~TGsGKT~~~   79 (236)
T 2pl3_A           36 TLKGLQEAQYRLVTEIQKQTIGLALQ-------------------------GKDVLGAAKTGSGKTLAF   79 (236)
T ss_dssp             HHHHHHHTTCCBCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEEeCCCCcHHHHH
Confidence            34455555666789999988865321                         256999999999999853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=88.34  E-value=0.14  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.|++|+|||+|+.++...+.
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999988875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=88.34  E-value=0.28  Score=41.02  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999988653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=88.21  E-value=0.28  Score=40.90  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|+..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=88.18  E-value=0.36  Score=46.99  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=28.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .++-+.|.|+.|+|||+++..+...+.....+++.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~l  139 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF  139 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence            356688999999999999999988775334556655

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=88.15  E-value=0.27  Score=44.53  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .=+.|.|++|||||.++.++..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999965

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=88.13  E-value=0.28  Score=46.61  Aligned_cols=49  Identities=16%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  212 (257)
T 1g6h_A          163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  212 (257)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            47899999999999999887 79888888999999988778777777765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=88.10  E-value=0.3  Score=41.14  Aligned_cols=22  Identities=14%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|++.+...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999754

>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A

Probab=88.10  E-value=2.4  Score=48.69  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=26.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE  112 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~  112 (438)
                      .+.+++.+++|+|||...-....... ..+.++-+    -+.+.++++.+.+
T Consensus        93 g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~  143 (1104)
T 4ddu_A           93 GKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQK  143 (1104)
T ss_dssp             TCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHH
Confidence            36799999999999983322222211 22334433    3455555555544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=87.89  E-value=0.33  Score=45.99  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.-+.|.|++|+|||+|+.++...+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45699999999999999999987663

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=87.88  E-value=0.28  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..|+|+.|+|||.|++++.-++
T Consensus        26 ~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=87.88  E-value=0.3  Score=43.34  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      +.|.|++|+|||.|+..+...
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            789999999999999999764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=87.84  E-value=0.3  Score=46.68  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd  212 (262)
T 1b0u_A          163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE  212 (262)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999987 79888888999999988778777777654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=87.82  E-value=0.38  Score=44.44  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.-+.|.|++|+|||.++.++...+.
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            44589999999999999999987663

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=87.82  E-value=2.9  Score=50.26  Aligned_cols=62  Identities=13%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhhhcc
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESCETK   92 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l~~~   92 (438)
                      .|+++-..+-=..+|-|.+++..+   +                     ...+.+++.+|+|+|||.++.+.. ..+...
T Consensus       915 ~~e~l~~~~f~~fnpiQ~q~~~~l---~---------------------~~~~nvlv~APTGSGKTliaelail~~l~~~  970 (1724)
T 4f92_B          915 AFESLYQDKFPFFNPIQTQVFNTV---Y---------------------NSDDNVFVGAPTGSGKTICAEFAILRMLLQS  970 (1724)
T ss_dssp             HHHTTTTTTCSBCCHHHHHHHHHH---H---------------------SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHH---h---------------------cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC
Confidence            455555444344699999876543   2                     124679999999999999887654 333333


Q ss_pred             cceeeec
Q psy318           93 QKQRVHF   99 (438)
Q Consensus        93 ~k~R~Hf   99 (438)
                      .+.|+-|
T Consensus       971 ~~~kavy  977 (1724)
T 4f92_B          971 SEGRCVY  977 (1724)
T ss_dssp             TTCCEEE
T ss_pred             CCCEEEE
Confidence            3455655

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=87.80  E-value=0.32  Score=40.74  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|+..+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=87.78  E-value=0.29  Score=47.01  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-|.|+.|+|||+|+++++....
T Consensus         5 v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999988763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=87.76  E-value=0.28  Score=46.60  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      +=++|.|++|+|||+++..+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999764

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=87.75  E-value=1.1  Score=43.66  Aligned_cols=46  Identities=15%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF   85 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f   85 (438)
                      .+.+.+.|--.+-+.|.+++..+..                         .+.+++.+|+|+|||...-+.
T Consensus        33 ~~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~li~a~TGsGKT~~~~~~   78 (400)
T 1s2m_A           33 LMGIFEAGFEKPSPIQEEAIPVAIT-------------------------GRDILARAKNGTGKTAAFVIP   78 (400)
T ss_dssp             HHHHHHTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhc-------------------------CCCEEEECCCCcHHHHHHHHH
Confidence            4444445544589999998875432                         146999999999999754433

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.65  E-value=0.33  Score=40.84  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|+..+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3889999999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=87.64  E-value=0.33  Score=40.63  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|+..+...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=87.62  E-value=0.31  Score=46.08  Aligned_cols=48  Identities=19%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+ ..|..+|++|..
T Consensus       155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~  203 (247)
T 2ff7_A          155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHR  203 (247)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSS
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence            47899999999999999987 7888888888888888 467777777765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=87.59  E-value=0.31  Score=46.55  Aligned_cols=49  Identities=24%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd  197 (266)
T 2yz2_A          148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD  197 (266)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            47899999999999999997 79888888999999987778777777765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=87.58  E-value=0.3  Score=41.54  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.|.|++|+|||.|+..+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            489999999999999999854

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=87.56  E-value=0.29  Score=48.70  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.||+|+|||.|...+...+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=87.55  E-value=1.2  Score=42.11  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ..=+-|.|+.|+|||+|+.++..-++ +..-++.|+
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~   67 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFE   67 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence            34477999999999999999977664 334456554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=87.50  E-value=0.29  Score=41.32  Aligned_cols=19  Identities=42%  Similarity=0.627  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      +.|.|++|+|||.|+..+.
T Consensus         5 i~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            7899999999999999884

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=87.47  E-value=1.2  Score=39.95  Aligned_cols=47  Identities=13%  Similarity=0.010  Sum_probs=32.1

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF   85 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f   85 (438)
                      ..+.+...|--.+-+.|.+++..+-.                         .+.+++.+|+|+|||...-+.
T Consensus        25 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~li~~~TGsGKT~~~~~~   71 (220)
T 1t6n_A           25 LLRAIVDCGFEHPSEVQHECIPQAIL-------------------------GMDVLCQAKSGMGKTAVFVLA   71 (220)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCchhhhhhHH
Confidence            34455444544489999998864421                         145999999999999865444

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=87.42  E-value=0.3  Score=46.94  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      |.=|.|.|++|||||+++..+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3459999999999999999997

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=87.41  E-value=0.34  Score=41.34  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999643

>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19

Probab=87.36  E-value=0.87  Score=50.39  Aligned_cols=55  Identities=20%  Similarity=0.302  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      ...++..+.-.+.+.+.|.+++..+..   .+.                .+.|..++|.|++|+|||..+-+..
T Consensus       356 ~~~~~~~~~lpf~lt~~Q~~ai~~I~~---~l~----------------~~~~~~~Ll~a~TGSGKTlvall~i  410 (780)
T 1gm5_A          356 KLAEEFIKSLPFKLTNAQKRAHQEIRN---DMI----------------SEKPMNRLLQGDVGSGKTVVAQLAI  410 (780)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHH---HHH----------------SSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHh---hcc----------------ccCCCcEEEEcCCCCCHHHHHHHHH
Confidence            455666667778999999998886543   332                1345689999999999998765543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=87.28  E-value=0.32  Score=43.07  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      -+.|.|++|+|||.|+..+....
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999997654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=87.26  E-value=0.33  Score=40.92  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.+.|++|+|||.|++.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            388999999999999999965

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=87.24  E-value=0.36  Score=40.71  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|++.+...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=87.18  E-value=0.36  Score=44.99  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      ++=+.|.|++|+|||+++..+...+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            344788899999999999999988853

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=87.13  E-value=0.31  Score=46.64  Aligned_cols=49  Identities=12%  Similarity=0.047  Sum_probs=40.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  223 (267)
T 2zu0_C          174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY  223 (267)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence            47889999999999999987 78888888888888876667777777765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=87.13  E-value=0.37  Score=40.50  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=87.08  E-value=0.35  Score=40.75  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|++.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            488999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=87.08  E-value=0.33  Score=41.70  Aligned_cols=20  Identities=15%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|.|++|+|||.|+..+..
T Consensus         6 v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            6 IALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999965

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=87.08  E-value=0.33  Score=42.03  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .-+.|.|++|+|||.|+..+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999976

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=87.06  E-value=0.37  Score=40.49  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|+..+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=87.04  E-value=0.37  Score=41.53  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|++.+...
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=87.03  E-value=0.36  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIF   85 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f   85 (438)
                      +...=+.|.|+.|+|||+|+.++
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l   66 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLL   66 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=86.95  E-value=0.27  Score=48.01  Aligned_cols=19  Identities=32%  Similarity=0.497  Sum_probs=0.0

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      ..|+|+.|+|||.|+++++
T Consensus        27 ~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           27 TAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=86.94  E-value=0.42  Score=43.13  Aligned_cols=25  Identities=12%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-+.|.|++|+|||.+...+...+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4589999999999999999977653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=86.89  E-value=0.33  Score=42.44  Aligned_cols=20  Identities=40%  Similarity=0.675  Sum_probs=18.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|.|++|+|||.|+..+..
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999865

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=86.88  E-value=1.4  Score=40.54  Aligned_cols=43  Identities=16%  Similarity=-0.038  Sum_probs=31.1

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+.+.+.|--.+.+.|.+++..+..                         .+.+++.+|+|+|||...
T Consensus        41 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------g~~~l~~apTGsGKT~~~   83 (242)
T 3fe2_A           41 MDVIARQNFTEPTAIQAQGWPVALS-------------------------GLDMVGVAQTGSGKTLSY   83 (242)
T ss_dssp             HHHHHTTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEEECTTSCHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCcCHHHHHH
Confidence            3444445555589999999875432                         146999999999999764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=86.85  E-value=0.35  Score=46.96  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=21.5

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=+-|.|+.|+|||+|+.++...+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3478999999999999999987664

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.81  E-value=0.37  Score=43.09  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..-|.|.|++|+|||.|+..+....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3459999999999999999997644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=86.80  E-value=0.39  Score=40.59  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.+.|++|+|||.|+..+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=86.77  E-value=0.43  Score=46.89  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.=+-|.|++|+|||+|+.++...++
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhcc
Confidence            34478999999999999999988774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=86.72  E-value=0.44  Score=45.74  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ....=+-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~   79 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLD   79 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEEC

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=86.71  E-value=0.55  Score=45.94  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +.=+.|.|+.|+|||+|+..+...+.. ...++.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l  135 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMF  135 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEE
Confidence            455889999999999999999877752 3445555

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=86.65  E-value=0.38  Score=46.52  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=0.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      +-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus        50 ~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~   81 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNAYEP-ATSGTVNLF   81 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC-CCCeEEEEC

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=86.63  E-value=0.4  Score=40.89  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --+.|.|++|+|||.|+..+...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999988653

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=86.57  E-value=1.3  Score=41.15  Aligned_cols=73  Identities=12%  Similarity=0.067  Sum_probs=41.8

Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhh-hccc
Q psy318           16 YEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESC-ETKQ   93 (438)
Q Consensus        16 ~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l-~~~~   93 (438)
                      +.+-..|-..+-+.|.+++..+..                         .+.+++.+++|+|||...-+.. ..+ ..+.
T Consensus        56 ~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~  110 (249)
T 3ber_A           56 EACDQLGWTKPTKIQIEAIPLALQ-------------------------GRDIIGLAETGSGKTGAFALPILNALLETPQ  110 (249)
T ss_dssp             HHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCC
Confidence            344444555778888887764321                         2579999999999998643332 222 2222


Q ss_pred             ceeeec----hhhhHHHHHHHHHH
Q psy318           94 KQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        94 k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      +.++-+    .+....+.+.+.+.
T Consensus       111 ~~~~lil~Ptr~L~~q~~~~~~~~  134 (249)
T 3ber_A          111 RLFALVLTPTRELAFQISEQFEAL  134 (249)
T ss_dssp             SSCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHH
Confidence            334433    34445555555444

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=86.54  E-value=0.43  Score=40.13  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=18.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      +.|.|++|+|||.|+..+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999653

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=86.49  E-value=1.1  Score=46.81  Aligned_cols=48  Identities=17%  Similarity=0.014  Sum_probs=32.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .++.+-++|.+++..+-...   .+                 ..++++|.+++|+|||..+-.+...+
T Consensus       175 ~~~~lr~~Q~~ai~~~~~~~---~~-----------------~~~~~ll~~~TGsGKT~~~~~~~~~l  222 (590)
T 3h1t_A          175 SGYSPRYYQQIAINRAVQSV---LQ-----------------GKKRSLITMATGTGKTVVAFQISWKL  222 (590)
T ss_dssp             ----CCHHHHHHHHHHHHHH---HT-----------------TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHH---hc-----------------CCCceEEEecCCCChHHHHHHHHHHH
Confidence            34578899999988765432   11                 12568999999999999876665554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=86.32  E-value=0.42  Score=41.12  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=86.31  E-value=0.43  Score=40.58  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --+.|.|.+|+|||.|+..+...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=86.29  E-value=1.7  Score=41.44  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=26.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ..=+-|.|+.|+|||+|+.++..-++ +..-.+.++
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~   67 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYD   67 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEC
Confidence            34477999999999999999976653 334556554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=86.27  E-value=0.39  Score=44.15  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .+|++|.|++|+|||.|+-.+..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            57999999999999999988854

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=86.27  E-value=1.4  Score=41.98  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=26.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ..=+-|.||.|+|||+|+.++..-++ +..-++.|+
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~   66 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVN   66 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence            34478999999999999999976653 334456554

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=86.26  E-value=0.42  Score=41.25  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=19.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|++.+...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=86.21  E-value=0.41  Score=47.78  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ..+-+.|.|+.|+|||+|+.++...++. ....+.+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~i  208 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITI  208 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEE
Confidence            3456899999999999999999887753 2344444

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=86.20  E-value=0.41  Score=40.75  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .-+.|.|.+|+|||.|+..+...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=86.18  E-value=0.4  Score=40.59  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      +.|.|++|+|||.|+..+.
T Consensus         5 i~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999985

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=86.17  E-value=0.44  Score=40.27  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      --+.|.|++|+|||.|+..+..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3599999999999999999964

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=86.08  E-value=0.38  Score=41.60  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .-|.|.|++|+|||.|++.+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=86.07  E-value=0.4  Score=40.87  Aligned_cols=21  Identities=38%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.|.|++|+|||.|++.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=86.07  E-value=0.43  Score=40.59  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|+..+..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=86.03  E-value=0.39  Score=41.89  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      ..-+.|.|++|+|||.|++.+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            355999999999999999998643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=86.02  E-value=0.45  Score=40.57  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|+..+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=85.97  E-value=0.4  Score=44.29  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +=+.|.|+.|+|||+++..+...+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4589999999999999999988873

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=85.96  E-value=0.4  Score=47.75  Aligned_cols=43  Identities=5%  Similarity=0.068  Sum_probs=30.0

Q ss_pred             hhc-cCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCC
Q psy318          341 CQI-FHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDV  386 (438)
Q Consensus       341 a~~-f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~  386 (438)
                      +.. -.+++++.+-  +.-+......+..+|..+- .+..++++++.
T Consensus       302 ~~~~~~~lllDEp~--~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~  345 (371)
T 3auy_A          302 IGNRVECIILDEPT--VYLDENRRAKLAEIFRKVK-SIPQMIIITHH  345 (371)
T ss_dssp             HSSCCSEEEEESTT--TTCCHHHHHHHHHHHHHCC-SCSEEEEEESC
T ss_pred             hcCCCCeEEEeCCC--CcCCHHHHHHHHHHHHHhc-cCCeEEEEECh
Confidence            456 7889998864  4456677788888888763 34467777665

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=85.82  E-value=0.46  Score=40.92  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999754

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=85.81  E-value=1.2  Score=41.72  Aligned_cols=47  Identities=15%  Similarity=0.070  Sum_probs=28.1

Q ss_pred             hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      .+..+|+|||.+.. +.+-...+..++..+ ....++|+.|-.+|.++.
T Consensus       200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~-~~~~q~l~~SAT~~~~v~  247 (262)
T 3ly5_A          200 KNLQCLVIDEADRILDVGFEEELKQIIKLL-PTRRQTMLFSATQTRKVE  247 (262)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHHS-CSSSEEEEECSSCCHHHH
T ss_pred             ccCCEEEEcChHHHhhhhHHHHHHHHHHhC-CCCCeEEEEEecCCHHHH
Confidence            55789999999963 222223344444443 344667777766666554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=85.80  E-value=0.44  Score=41.06  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=85.79  E-value=1.4  Score=41.19  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=26.0

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ..=+-|.|+.|+|||+|+.++..-++ +..-.+.|+
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~   66 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFN   66 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEC
Confidence            34478999999999999999977653 334455553

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=85.71  E-value=1.5  Score=41.33  Aligned_cols=43  Identities=14%  Similarity=0.078  Sum_probs=27.3

Q ss_pred             HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318          177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD  223 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~  223 (438)
                      .....++|++||.|.....   .+..++..+. ....+|+.|-.||.
T Consensus       222 ~~~~~~~vIiDEaH~~~~~---~~~~il~~~~-~~~~~l~lSATp~~  264 (282)
T 1rif_A          222 WFSQFGMMMNDECHLATGK---SISSIISGLN-NCMFKFGLSGSLRD  264 (282)
T ss_dssp             GGGGEEEEEEETGGGCCHH---HHHHHTTTCT-TCCEEEEECSSCCT
T ss_pred             HHhhCCEEEEECCccCCcc---cHHHHHHHhh-cCCeEEEEeCCCCC
Confidence            3567899999999998632   2333444332 24567777777653

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=85.64  E-value=0.69  Score=47.27  Aligned_cols=64  Identities=6%  Similarity=0.053  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec---
Q psy318           23 EIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF---   99 (438)
Q Consensus        23 ~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf---   99 (438)
                      .+.+-+.|.+++..+-.                         .+.++|.|++|+|||..+-+....+-...+.++-+   
T Consensus       111 ~~~l~~~Q~~ai~~~~~-------------------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P  165 (510)
T 2oca_A          111 RIEPHWYQKDAVFEGLV-------------------------NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP  165 (510)
T ss_dssp             EECCCHHHHHHHHHHHH-------------------------HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred             CCCCCHHHHHHHHHHHh-------------------------cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            34788899988875422                         14689999999999998865544332122334444   


Q ss_pred             -hhhhHHHHHHHH
Q psy318          100 -NKFMLDVHAKIH  111 (438)
Q Consensus       100 -~~fm~~v~~~l~  111 (438)
                       ...+....+.+.
T Consensus       166 ~~~L~~Q~~~~~~  178 (510)
T 2oca_A          166 TTALTTQMADDFV  178 (510)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence             234444444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=85.56  E-value=0.49  Score=40.53  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --|.|.|++|+|||.|+..+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45999999999999999998653

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=85.55  E-value=1.2  Score=43.51  Aligned_cols=75  Identities=9%  Similarity=0.046  Sum_probs=44.6

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhhhc-
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESCET-   91 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l~~-   91 (438)
                      .++.+-+.|-..+-+.|.+++..+..                         .+.+++.+++|+|||...-+. ...+.. 
T Consensus        51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~  105 (414)
T 3eiq_A           51 LLRGIYAYGFEKPSAIQQRAILPCIK-------------------------GYDVIAQAQSGTGKTATFAISILQQIELD  105 (414)
T ss_dssp             HHHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEECCCSCSSSHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHcCCCCCCHHHHHHhHHHhC-------------------------CCCEEEECCCCCcccHHHHHHHHHHHhhc
Confidence            45555566777789999998864321                         245899999999999874333 333321 


Q ss_pred             ccceeeec----hhhhHHHHHHHHHH
Q psy318           92 KQKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        92 ~~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      ..+.++-+    ......+++.+.+.
T Consensus       106 ~~~~~~lil~P~~~L~~q~~~~~~~~  131 (414)
T 3eiq_A          106 LKATQALVLAPTRELAQQIQKVVMAL  131 (414)
T ss_dssp             SCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEeChHHHHHHHHHHHHHH
Confidence            12334433    23444455444443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=85.54  E-value=0.56  Score=40.00  Aligned_cols=23  Identities=39%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.-|.|.|++|+|||.|+..+..
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44599999999999999999865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=85.53  E-value=5.2  Score=41.39  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .|+-+.+.|++|+|||+++..+...+.. ++.|+-.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence            3677999999999999999999888753 3455543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=85.51  E-value=0.49  Score=40.43  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|++.+...
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=85.50  E-value=0.26  Score=43.79  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|++++..
T Consensus        28 ~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           28 EVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999998854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=85.50  E-value=0.48  Score=41.36  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|++.+...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5999999999999999998653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=85.44  E-value=0.5  Score=40.54  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999988653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=85.37  E-value=0.43  Score=41.51  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|++.+...
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=85.36  E-value=0.48  Score=46.13  Aligned_cols=48  Identities=10%  Similarity=0.053  Sum_probs=35.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRL-FTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..+ +..+ ..|..+|++|..
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~~~~tviivtHd  218 (290)
T 2bbs_A          169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSK  218 (290)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-TTTSEEEEECCC
T ss_pred             HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Confidence            47899999999999999987 687776666664 3333 347777777765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=85.33  E-value=0.52  Score=42.41  Aligned_cols=26  Identities=23%  Similarity=0.114  Sum_probs=22.3

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-+.|.|+.|+|||.|+..+...+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35688999999999999999987764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=85.28  E-value=0.48  Score=41.22  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --+.|.|++|+|||.|+..+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34889999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=85.23  E-value=0.48  Score=47.90  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..++|+|++|+|||+|+.++...+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4699999999999999999987764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=85.18  E-value=0.51  Score=40.34  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=85.10  E-value=0.15  Score=48.09  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      +.|.||.|+|||.|++++.-.+... .-+++|+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~-~G~i~~~   61 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPD-LTLLHFR   61 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCC-TTTC---
T ss_pred             EEEECCCCCCHHHHHHHHhcccccC-CCeEEEC
Confidence            5688999999999999998877433 3345553

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=85.05  E-value=0.52  Score=41.32  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --|.|.|++|+|||.|+..+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=85.02  E-value=0.55  Score=47.74  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.1

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .|.=|+|.|++|+|||+++..+...+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            35668899999999999999987655

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=84.95  E-value=0.66  Score=45.29  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      .+.=+.|.|+.|+|||+|+..+...+. +...++.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l  133 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLM  133 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence            345588999999999999999988775 23445555

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=84.88  E-value=0.54  Score=40.84  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.+.|.+|+|||.|+..+...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=84.81  E-value=0.55  Score=40.18  Aligned_cols=23  Identities=22%  Similarity=0.141  Sum_probs=19.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --+.|.|++|+|||.|+..+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45999999999999999988643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=84.73  E-value=0.67  Score=45.92  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=27.5

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      .|.=+.|.|+.|+|||+|+..+...+. +...++.+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~  163 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIA  163 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence            345688999999999999999988774 334456653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=84.66  E-value=0.56  Score=40.89  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5999999999999999998653

>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}

Probab=84.56  E-value=1  Score=49.06  Aligned_cols=184  Identities=11%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccccccch
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDY  257 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~Dy  257 (438)
                      ..++++|++||.-.++..       ++..+...-..+|+||....   |++ -.|..-+.|+..| ..+..++|+...-|
T Consensus       253 ~~~~dlliVDEAAaIp~p-------ll~~ll~~~~~v~~~tTv~G---YEG-tGrgf~lk~~~~L-~~~~~~~L~~piR~  320 (671)
T 2zpa_A          253 DEQADWLVVDEAAAIPAP-------LLHQLVSRFPRTLLTTTVQG---YEG-TGRGFLLKFCARF-PHLHRFELQQPIRW  320 (671)
T ss_dssp             CCCCSEEEEETGGGSCHH-------HHHHHHTTSSEEEEEEEBSS---TTB-BCHHHHHHHHHTS-TTCEEEECCSCSSS
T ss_pred             cccCCEEEEEchhcCCHH-------HHHHHHhhCCeEEEEecCCc---CCC-cCcccccccHhhc-CCCcEEEccCceec
Confidence            456999999998887744       34455545445666555542   332 3343225566655 33556666645433


Q ss_pred             hccc--------------c--ccccCCCce-eecCch---hHHHHHHHHHHHHcCCCCCCccCceec----cCCceEEec
Q psy318          258 RSLK--------------A--NAEESSTKT-YFVKNF---ANEKKLHGIFKLLCSQENDIVRPRVIT----IMGRNVTFN  313 (438)
Q Consensus       258 R~~~--------------~--~~~~~~~~~-~~~~~~---~~~~~~~~~f~~l~~~~~~~~~~~~l~----v~gR~l~v~  313 (438)
                      -...              .  ......... +++..+   ..+..+.++|.-+...+- ...|..|.    .-+..+-|-
T Consensus       321 a~~DplE~wl~~~llld~~~~~~~~~~~~~~~~~~~~~l~~~e~~L~~~~~Ll~~aHY-r~sp~dL~~llD~p~~~l~va  399 (671)
T 2zpa_A          321 AQGCPLEKMVSEALVFDDENFTHTPQGNIVISAFEQTLWQSDPETPLKVYQLLSGAHY-RTSPLDLRRMMDAPGQHFLQA  399 (671)
T ss_dssp             CTTCHHHHHHHHHHTCCCGGGGSCCCSCCEEEEEETTHHHHCTHHHHHHHHHHHHHSS-SBCHHHHHHHHHCTTEEEEEE
T ss_pred             CCCCCHHHHHHHhhCcCCCCCCCCCCCcceEEEEcHHHhhcCHHHHHHHHHHHHhccc-CCCHHHHHHHhcCCCceEEEE
Confidence            2110              0  000011112 223332   445678888877764432 12223332    123344443


Q ss_pred             cccC---cEEEeeHH-----HHhc-------CCCChhhHHHHhhc--------cCEEEEcCCCCCCc-CCchHHHHHHHH
Q psy318          314 KTCG---QILEATFD-----ELCS-------RDLGSSDYLHICQI--------FHTVIIRNVPQLNI-KLRSQSRRFITL  369 (438)
Q Consensus       314 ~~~~---~va~f~F~-----eLC~-------~plg~aDYl~la~~--------f~ti~i~~VP~l~~-~~~n~arRFI~L  369 (438)
                      ...+   ++++..++     ++|.       +|.|-.==-.++.+        ...+.|.+|=+... ..+--+++.+..
T Consensus       400 ~~~g~IVG~i~v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~~IAV~P~~rg~GiG~~LL~~  479 (671)
T 2zpa_A          400 AGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAG  479 (671)
T ss_dssp             ECSSSEEEEEEEEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHH
T ss_pred             EECCeEEEEEEEEEcCCcCHHHHHHHHhcccCCCCcchhHHHHHhhcchhhcccCceEEEEEEECHHHcCCCHHHHHHHH
Confidence            3333   45555543     2321       24442111122222        34455555554433 356788888887


Q ss_pred             HHHhh
Q psy318          370 IDALY  374 (438)
Q Consensus       370 ID~lY  374 (438)
                      +-..+
T Consensus       480 ~e~~a  484 (671)
T 2zpa_A          480 ALQYT  484 (671)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            76665

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=84.54  E-value=0.56  Score=41.23  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --|.|.|++|+|||.|+..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=84.49  E-value=0.49  Score=40.80  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.7

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      |.|.|++|+|||.|+..+...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999998653

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=84.48  E-value=1.8  Score=42.70  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=38.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec--
Q psy318           22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF--   99 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf--   99 (438)
                      ..+.+-|.|.+++..+-                         ..+.+++.+|+|+|||...-+...... ..+.++-|  
T Consensus        18 ~~~~~~~~Q~~~i~~i~-------------------------~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~   71 (414)
T 3oiy_A           18 FGKDLTGYQRLWAKRIV-------------------------QGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVF   71 (414)
T ss_dssp             HSSCCCHHHHHHHHHHT-------------------------TTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred             cCCCCCHHHHHHHHHHh-------------------------cCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence            45677888888776432                         124689999999999983332222221 22334433  


Q ss_pred             --hhhhHHHHHHHHH
Q psy318          100 --NKFMLDVHAKIHE  112 (438)
Q Consensus       100 --~~fm~~v~~~l~~  112 (438)
                        .+.+.++++.+.+
T Consensus        72 Pt~~L~~q~~~~~~~   86 (414)
T 3oiy_A           72 PTVTLVKQTLERLQK   86 (414)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence              4555666655554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=84.33  E-value=0.42  Score=41.09  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      +--+.|.|++|+|||.|+..+.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4569999999999999999885

>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19

Probab=84.32  E-value=1.3  Score=47.34  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=26.9

Q ss_pred             HHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          176 DIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       176 ~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      .+....+.|++||||-+++.+-.    ++..|...+..+++.++
T Consensus       203 ~~~~~~~~ilVDEfQDt~~~Q~~----ll~~L~~~~~~l~~vGD  242 (673)
T 1uaa_A          203 RWQNKIRYLLVDEYQDTNTSQYE----LVKLLVGSRARFTVVGD  242 (673)
T ss_dssp             HHHTTCSEEEESCGGGCBHHHHH----HHHHHHTTTCCEEEECC
T ss_pred             HHHhhCcEEEEeccccCCHHHHH----HHHHHhcCCCeEEEEeC
Confidence            34456799999999999876544    44555555555666665

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=84.31  E-value=0.68  Score=41.71  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++-+.|.|+.|+|||.|+..+...+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            35688999999999999999988775

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=84.26  E-value=0.61  Score=46.38  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|+-+.|.||+|+|||.|+..+...++
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            456789999999999999999987764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=84.22  E-value=0.6  Score=40.84  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=84.17  E-value=0.6  Score=40.68  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=19.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.|.|.+|+|||.|+..+..
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            599999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=84.12  E-value=0.6  Score=41.87  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-+.|.|.+|+|||.|+..+...+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999987753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=84.07  E-value=0.61  Score=40.50  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=84.06  E-value=0.53  Score=41.10  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .--+.|.|++|+|||.|+..+...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            345999999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=84.03  E-value=0.58  Score=41.05  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|++.+...
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5999999999999999998653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=83.94  E-value=0.57  Score=41.22  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998653

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=83.93  E-value=0.88  Score=46.54  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      +.++..|..+-..+..+.+.+.+      |          -.--|+-||..|+||||.|
T Consensus       116 F~~~~~Q~~Vf~~v~~lv~~~l~------G----------~N~tifAYGqTGSGKTyTM  158 (403)
T 4etp_A          116 FDQQDTNVDVFKEVGQLVQSSLD------G----------YNVAIFAYGQTGSGKTFTM  158 (403)
T ss_dssp             ECTTCCHHHHHHHHHHHHHHHHT------T----------CCEEEEEESCTTSSHHHHH
T ss_pred             ECCCCchHHHHHHHHHHHHHHhC------C----------cceEEEEECCCCCCCceEe
Confidence            34567788887777666655432      0          1125899999999999999

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=83.90  E-value=0.63  Score=40.72  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|+..+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            489999999999999999865

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=83.79  E-value=1.8  Score=42.41  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=32.2

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      ..+.+-..|--.+-+.|.+++..+..                         .+.+++.+|+|+|||...
T Consensus        26 l~~~l~~~~~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~a~TGsGKT~~~   69 (417)
T 2i4i_A           26 IMGNIELTRYTRPTPVQKHAIPIIKE-------------------------KRDLMACAQTGSGKTAAF   69 (417)
T ss_dssp             HHHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHcc-------------------------CCCEEEEcCCCCHHHHHH
Confidence            34555556766889999999874321                         256999999999999743

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=83.77  E-value=0.71  Score=45.74  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=22.3

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|.=+-|.|++|||||+|+.++...+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344588999999999999999977664

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=83.75  E-value=0.65  Score=40.21  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      --|.|.|++|+|||.|+..+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=83.70  E-value=0.64  Score=41.05  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      --|.|.|++|+|||.|+..+..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=83.66  E-value=0.61  Score=41.21  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=83.60  E-value=0.65  Score=40.60  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      -|.|.|++|+|||.|+..+...-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            49999999999999999987643

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=83.59  E-value=1.8  Score=42.37  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318           14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF   85 (438)
Q Consensus        14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f   85 (438)
                      ..+.+-..|--.+-+.|.+++..+..                         .+.+++.+++|+|||...-+.
T Consensus        48 l~~~l~~~g~~~~~~~Q~~ai~~i~~-------------------------~~~~lv~a~TGsGKT~~~~~~   94 (410)
T 2j0s_A           48 LLRGIYAYGFEKPSAIQQRAIKQIIK-------------------------GRDVIAQSQSGTGKTATFSIS   94 (410)
T ss_dssp             HHHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCCchHHHHHH
Confidence            34444455555589999998875421                         146999999999999765543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=83.58  E-value=0.72  Score=43.58  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=23.6

Q ss_pred             cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +|..+...++=+.|.|++|+|||+++..+...+..
T Consensus        19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             -------CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34333333455788999999999999999888853

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=83.55  E-value=0.59  Score=46.56  Aligned_cols=43  Identities=21%  Similarity=0.419  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD   83 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd   83 (438)
                      .++..|.++-+.+..+.+.+.+                .-.--|+-||..|+|||+.|-
T Consensus        57 ~~~~~Q~~Vy~~v~~lv~~~l~----------------G~n~tifAYGqTGSGKTyTm~   99 (330)
T 2h58_A           57 SPQASQQDVFQEVQALVTSCID----------------GFNVCIFAYGQTGAGKTYTME   99 (330)
T ss_dssp             CTTCCHHHHHTTTHHHHHHHHT----------------TCCEEEEEESSTTSSHHHHHT
T ss_pred             CCCCCcHhHHHHHHHHHHHHhC----------------CCEEEEEeECCCCCCCcEEEe
Confidence            3566788777766555554422                011258899999999999993

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=83.53  E-value=0.66  Score=40.69  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|+..+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4999999999999999888653

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=83.51  E-value=1.9  Score=37.69  Aligned_cols=47  Identities=15%  Similarity=0.072  Sum_probs=38.1

Q ss_pred             HHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          174 ANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       174 a~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      |+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus        75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~  122 (148)
T 1f2t_B           75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD  122 (148)
T ss_dssp             HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred             HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence            577778899999999776 78887777888888887667777777765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=83.46  E-value=0.65  Score=39.88  Aligned_cols=21  Identities=33%  Similarity=0.321  Sum_probs=19.1

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.|.|++|+|||.|+..+..
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999999974

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=83.46  E-value=0.51  Score=40.43  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998653

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=83.45  E-value=1.6  Score=44.17  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=35.1

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      ..++.+-..|--.+.+.|.+++..+-.                       ..++.+++.|++|+|||...
T Consensus       102 ~l~~~l~~~g~~~p~~~Q~~ai~~il~-----------------------~~~~~~l~~a~TGsGKT~~~  148 (479)
T 3fmp_B          102 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAAF  148 (479)
T ss_dssp             HHHHHHHHTTCCSCCHHHHHHHHHHTS-----------------------BSCCEEEEECCSSSSHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHc-----------------------CCCCcEEEEcCCCCchhHHH
Confidence            446666777777889999998864421                       12468999999999999763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=83.38  E-value=0.62  Score=40.31  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .--+.+.|++|+|||.|+..+..
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=83.29  E-value=2.2  Score=40.14  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=26.8

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN  100 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~  100 (438)
                      ...=+-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~   69 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLID   69 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence            344588999999999999999977664 334556654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=83.29  E-value=0.59  Score=46.99  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =..|+|+.|+|||.|+++++-.+.
T Consensus        28 ~~~i~G~nG~GKttll~ai~~~~~   51 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYLALT   51 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHhcc
Confidence            367999999999999999986553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=83.28  E-value=1.2  Score=42.51  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=26.6

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh-cccceeeech
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE-TKQKQRVHFN  100 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~-~~~k~R~Hf~  100 (438)
                      ...=+-|.|+.|+|||+|+.++..-+. .+..-.+.|.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~   82 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK   82 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence            334488999999999999999987531 2334556654

>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*

Probab=83.28  E-value=1.8  Score=47.04  Aligned_cols=38  Identities=24%  Similarity=0.167  Sum_probs=25.2

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      ....+.|++||+|-++..+-.+    +..|...+..+++.++
T Consensus       214 ~~rf~~IlVDEfQDtn~~Q~~l----l~~L~~~~~~l~vVGD  251 (724)
T 1pjr_A          214 QYKFQYIHIDEYQDTNRAQYTL----VKKLAERFQNICAVGD  251 (724)
T ss_dssp             HHHCSEEEESSGGGCCHHHHHH----HHHHHTTTCCEEEEEC
T ss_pred             HhhCCEEEEEhHhcCCHHHHHH----HHHHHcCCCeEEEEEC
Confidence            3457999999999998776444    4444444444556665

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=83.27  E-value=0.65  Score=43.33  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -.|-|+|+.|||||++..+|..
T Consensus        10 ~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999965

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=83.18  E-value=0.7  Score=40.43  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|.+|+|||.|+..+...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5999999999999999999764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=83.13  E-value=0.38  Score=43.18  Aligned_cols=25  Identities=28%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-+-|.|+.|+|||+|+.++...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4578999999999999999987775

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=83.12  E-value=0.67  Score=40.34  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      --|.|.|++|+|||.|+..+..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            3589999999999999999965

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=83.11  E-value=0.71  Score=45.67  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=+-|.|++|+|||.|++++...+.
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3478999999999999999987663

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=83.10  E-value=0.63  Score=40.52  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .-|.|.|.+|+|||.|+..+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999854

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=83.01  E-value=0.71  Score=40.55  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -+.|.|++|+|||.|+..+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999877553

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=82.95  E-value=0.72  Score=46.26  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .++..|.++-+.+..+.+.+.+                .-.--|+-||..|+||||.|
T Consensus        61 ~~~~~Q~~Vy~~v~~lv~~~l~----------------G~n~tifAYGqTGSGKTyTM  102 (347)
T 1f9v_A           61 DQQDTNVDVFKEVGQLVQSSLD----------------GYNVCIFAYGQTGSGKTFTM  102 (347)
T ss_dssp             CTTCCHHHHHHHHHHHHGGGGG----------------TCCEEEEEECCTTSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhcC----------------CceeEEEEECCCCCCCcEec
Confidence            3566788877765544433211                11124889999999999999

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.93  E-value=0.72  Score=40.50  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      .--|.|.|++|+|||.|+..+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999998654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=82.86  E-value=0.66  Score=40.80  Aligned_cols=21  Identities=43%  Similarity=0.631  Sum_probs=18.9

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -|.|.|.+|+|||.|++.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999854

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=82.85  E-value=0.7  Score=45.88  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      =+-|.|++|+|||.|++.+...+
T Consensus        76 ~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           76 RVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=82.85  E-value=0.66  Score=41.14  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|.+|+|||.|+..|..
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            388999999999999999863

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=82.82  E-value=0.42  Score=46.26  Aligned_cols=24  Identities=17%  Similarity=0.319  Sum_probs=18.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =|-|.|+.|+|||+++..+...+.
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999988664

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=82.80  E-value=1.8  Score=41.87  Aligned_cols=74  Identities=9%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH-hh-hcc
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE-SC-ETK   92 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~-~l-~~~   92 (438)
                      .+.+...|--.+-|.|.+++..+..                         .+.+++.+|+|+|||..+-+..- .+ ...
T Consensus        20 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~   74 (391)
T 1xti_A           20 LRAIVDCGFEHPSEVQHECIPQAIL-------------------------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT   74 (391)
T ss_dssp             HHHHHHHSCCSCCHHHHHHHHHHTT-------------------------TCCEEEECSSCSSHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhc-------------------------CCcEEEECCCCCcHHHHHHHHHHHhhcccC
Confidence            3444444544489999998764321                         25699999999999986544332 22 122


Q ss_pred             cceeeec----hhhhHHHHHHHHHH
Q psy318           93 QKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        93 ~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      .+.++-+    .+....+.+.+.++
T Consensus        75 ~~~~~lil~P~~~L~~q~~~~~~~~   99 (391)
T 1xti_A           75 GQVSVLVMCHTRELAFQISKEYERF   99 (391)
T ss_dssp             TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCeeEEEECCCHHHHHHHHHHHHHH
Confidence            2334433    34445555545443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=82.79  E-value=0.7  Score=40.71  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      -+.|.|++|+|||.|+..+..
T Consensus        25 ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999975

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=82.71  E-value=0.59  Score=46.29  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+-+-|.|+.|+|||+|+.++...+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999977664

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=82.67  E-value=0.74  Score=40.60  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .--|.|.|++|+|||.|+..+..
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            34699999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.02
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.96
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.95
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.85
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.77
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.55
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.51
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.29
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.19
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.1
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.1
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.08
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.07
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.05
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.96
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.89
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.82
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.77
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.74
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.62
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.43
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.23
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.1
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.1
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.09
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.02
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.02
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.01
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.98
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.97
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.93
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.92
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.91
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.81
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.79
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.75
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.75
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.68
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.67
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.66
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.51
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.46
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.39
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.38
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.34
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.25
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.24
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.08
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.01
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.88
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.78
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.75
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	95.73
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.69
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.51
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.5
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.41
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.4
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.38
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.27
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.26
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.0
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.85
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.83
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.82
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.75
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.74
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.74
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.73
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.59
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	94.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.53
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.52
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.48
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.34
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.31
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.28
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.25
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.24
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.08
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.99
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.96
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.74
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.5
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.24
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.03
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.0
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.93
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.87
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.73
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.62
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	92.29
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.28
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.26
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.13
d1j8yf2	211	GTPase domain of the signal sequence recognition p	91.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.85
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.48
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.4
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.3
d1ls1a2	207	GTPase domain of the signal sequence recognition p	91.16
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.15
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.11
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.97
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.94
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	90.9
d1okkd2	207	GTPase domain of the signal recognition particle r	90.76
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.32
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.19
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.01
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.95
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.85
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	89.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	89.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	89.61
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	88.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	88.64
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.45
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	88.14
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.03
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	87.91
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	87.77
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	87.32
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.28
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.27
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	87.16
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	87.09
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	87.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	86.99
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	86.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	86.76
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.71
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.68
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	86.57
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	86.4
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	86.04
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	85.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	85.83
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.79
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	85.65
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	85.56
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.52
d1nrjb_	209	Signal recognition particle receptor beta-subunit	85.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	85.29
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	85.28
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.25
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	85.25
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	85.11
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.08
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.05
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	84.96
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.96
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	84.74
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	84.59
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	84.58
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	84.52
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	84.44
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	84.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.99
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	83.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	83.72
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	83.59
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	83.57
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	83.46
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	83.43
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	83.41
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	83.31
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	83.26
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	83.25
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	83.2
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	83.06
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	83.06
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	83.02
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	82.51
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.39
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	82.38
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	82.18
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	82.01
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	81.91
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	81.84
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	81.74
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	81.63
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	81.57
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	81.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	81.44
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	81.39
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	81.38
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	81.29
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	81.28
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	81.26
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	81.13
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	81.11
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	81.02
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	80.77
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	80.29
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	80.11
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	80.06

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.57  E-value=1.2e-14  Score=134.80  Aligned_cols=126  Identities=20%  Similarity=0.302  Sum_probs=88.0

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE  145 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (438)
                      +++||||++|+|||||+.++.+.+..+ ..++.|-..-....+........                             
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   86 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAMVEHLKKG-----------------------------   86 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHHHHHHT-----------------------------
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccC-ccceEEechHHHHHHHHHHHHcc-----------------------------
Confidence            569999999999999999999988533 45666644322222111111111                             


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318          146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVVVVATSNRAPD  223 (438)
Q Consensus       146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~  223 (438)
                                             .... ..+.+..+++|||||++..  ...++..||+++|.+.+.|+.+|+||+.+|.
T Consensus        87 -----------------------~~~~-~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~  142 (213)
T d1l8qa2          87 -----------------------TINE-FRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ  142 (213)
T ss_dssp             -----------------------CHHH-HHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred             -----------------------chhh-HHHHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence                                   0111 3455679999999999986  4667888999999999999999999999999


Q ss_pred             hhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          224 DLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       224 ~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      +|..  +.    ..+.+||.. +.++.++
T Consensus       143 ~l~~--~~----~dL~SRL~~-g~~~~i~  164 (213)
T d1l8qa2         143 KLDG--VS----DRLVSRFEG-GILVEIE  164 (213)
T ss_dssp             GCTT--SC----HHHHHHHHT-SEEEECC
T ss_pred             hccc--cc----hHHHHHhhC-ceEEEEC
Confidence            9952  21    135666654 4455554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=5.6e-10  Score=105.39  Aligned_cols=83  Identities=19%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             hcCCeEEEecCCCCChh--------hHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc-----
Q psy318          179 SKTWLICFDEFQVTDIA--------DAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP-----  237 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~--------da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-----  237 (438)
                      .++.+|+|||++..-..        ...++..+.+.+.    ..++.+|+|||++    |+-+.++++++....+     
T Consensus        96 ~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~  175 (258)
T d1e32a2          96 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  175 (258)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHH
Confidence            46789999999986321        1223333333332    2345678899984    4444456676655444     


Q ss_pred             -HHHHHHhhccccccccccchhccc
Q psy318          238 -FIDVLKTYCDVASLNSNIDYRSLK  261 (438)
Q Consensus       238 -~I~~L~~~~~vv~ld~g~DyR~~~  261 (438)
                       ...+|+.++....+..+.||....
T Consensus       176 ~R~~il~~~l~~~~~~~~~~~~~la  200 (258)
T d1e32a2         176 GRLEILQIHTKNMKLADDVDLEQVA  200 (258)
T ss_dssp             HHHHHHHHTTTTSCBCTTCCHHHHH
T ss_pred             HHHHHhhhhccCcccccccchhhhh
Confidence             467888888877777677877554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=1.4e-09  Score=102.41  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=26.1

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.|+|++||||||||||+|+.++.+.+.
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence            45689999999999999999999998774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.5e-09  Score=102.81  Aligned_cols=29  Identities=34%  Similarity=0.543  Sum_probs=25.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+.|+|++||||||||||+|+.++...+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            45789999999999999999999998874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.85  E-value=3.1e-09  Score=99.80  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.+.+..|-+...+.=..+++.++.+.+.+.+.             ...+++||+||||||||||+|+.++++.+.
T Consensus         3 ~~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~-------------~~~p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_           3 YASYIMNGIIKWGDPVTRVLDDGELLVQQTKNS-------------DRTPLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             STTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHC-------------SSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             HHHhhccCCcCcCHHHHHHHHHHHHHHHHHhcc-------------CCCCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            345566676666655567788888887777541             123468999999999999999999998874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=5.9e-09  Score=98.74  Aligned_cols=30  Identities=33%  Similarity=0.690  Sum_probs=26.8

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+.++|++||||+|||||+|+.++...+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            346789999999999999999999998884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.5e-07  Score=85.61  Aligned_cols=49  Identities=27%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .|..++.+|+.+.+.-..              ....+++++||||||||||+|+.++.+.+..
T Consensus        13 Gqe~~~~~l~~~i~~~~~--------------~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          13 GQENVKKKLSLALEAAKM--------------RGEVLDHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             SCHHHHHHHHHHHHHHHH--------------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCcHHHHHHHHHhccCC
Confidence            578888888887654221              1234568999999999999999999988753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.51  E-value=1.4e-07  Score=86.15  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .|..++.+|..+.+..+.              +...+++++||||||+|||+|+.++...+.
T Consensus        13 Gq~~~~~~L~~~i~~~~~--------------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          13 GQERLKQKLRVYLEAAKA--------------RKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             SCHHHHHHHHHHHHHHTT--------------SSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            478888888877554321              234568999999999999999999988774

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.48  E-value=5.6e-08  Score=95.03  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CCCCceEE-EccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYI-YGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL-~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|+|++| |||||||||+|+.++...+.
T Consensus       120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         120 RYASGMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ccCCceEEEECCCCccHHHHHHHHHHHhc
Confidence            35789776 89999999999999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.29  E-value=1.1e-06  Score=79.62  Aligned_cols=59  Identities=15%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ....++++||++......+..|..+++.-. ..+.+|+++|.+.. +             ++.|..+|.++.+.
T Consensus       108 ~~~~iilide~d~~~~~~~~~ll~~l~~~~-~~~~~i~~~n~~~~-i-------------~~~l~sR~~~i~~~  166 (231)
T d1iqpa2         108 ASFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSK-I-------------IEPIQSRCAIFRFR  166 (231)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGG-S-------------CHHHHHTEEEEECC
T ss_pred             CCceEEeehhhhhcchhHHHHHhhhcccCC-cceEEEeccCChhh-c-------------hHhHhCcccccccc
Confidence            356799999999987766665555554332 23467788887532 1             13466677766665

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=1.1e-06  Score=84.34  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      .+|+|++||||||||||+|+.+++..+..+ -.++.-.+|
T Consensus        47 ~~~~~iLl~GPpG~GKT~lAkalA~~~~~~-~~~i~~s~~   85 (309)
T d1ofha_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAP-FIKVEATKF   85 (309)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCC-EEEEEGGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHhhccccc-hhccccccc
Confidence            367999999999999999999999987532 345554444

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=1.2e-06  Score=79.82  Aligned_cols=42  Identities=17%  Similarity=0.095  Sum_probs=30.6

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ...++++||++.........+..+++........+++++|..
T Consensus       123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~  164 (253)
T d1sxja2         123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER  164 (253)
T ss_dssp             TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT
T ss_pred             cceEEEeeeccccccchhhhhHHHhhhhcccccccccccccc
Confidence            467899999999876666666677776666666777777654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=3.5e-06  Score=77.31  Aligned_cols=58  Identities=12%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...+++|||++.+....+-.|..+++.. .....+|+++|.++.              ++..|+.+|.++.+.
T Consensus       115 ~~kviiIde~d~l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~~--------------i~~~i~SRc~~i~~~  172 (239)
T d1njfa_         115 RFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQK--------------LPVTILSRCLQFHLK  172 (239)
T ss_dssp             SSEEEEEETGGGSCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG--------------SCHHHHTTSEEEECC
T ss_pred             CCEEEEEECcccCCHHHHHHHHHHHhcC-CCCeEEEEEcCCccc--------------cChhHhhhhcccccc
Confidence            3469999999998765554454544421 234578888887432              234678888888776

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=2.3e-06  Score=77.04  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      +..++++||++......+..|..+++... ....+++++|.+.. +             +..|+.+|..+.+.
T Consensus        99 ~~kiiiiDe~d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~-i-------------~~~i~sr~~~i~~~  156 (227)
T d1sxjc2          99 GFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAHK-L-------------TPALLSQCTRFRFQ  156 (227)
T ss_dssp             SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGG-S-------------CHHHHTTSEEEECC
T ss_pred             CeEEEEEeccccchhhHHHHHHHHhhhcc-cceeeccccCcHHH-h-------------HHHHHHHHhhhccc
Confidence            34699999999988777777766666543 33566777776432 1             23466777776665

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=3.9e-06  Score=76.11  Aligned_cols=42  Identities=7%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      ....+++|||++......+..|..+++.. ...+.+|+|+|.+
T Consensus       130 ~~~~iiiide~d~l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~  171 (252)
T d1sxje2         130 HRYKCVIINEANSLTKDAQAALRRTMEKY-SKNIRLIMVCDSM  171 (252)
T ss_dssp             -CCEEEEEECTTSSCHHHHHHHHHHHHHS-TTTEEEEEEESCS
T ss_pred             CCceEEEeccccccccccchhhhcccccc-cccccceeeeccc
Confidence            34679999999998776666666666643 2335678888874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.07  E-value=2.6e-05  Score=66.56  Aligned_cols=47  Identities=17%  Similarity=0.083  Sum_probs=31.1

Q ss_pred             HHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          174 ANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       174 a~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +......+++|++||.+.....+......+...+.+.+..+|+++..
T Consensus        93 ~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~  139 (178)
T d1ye8a1          93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI  139 (178)
T ss_dssp             HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred             HHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEcc
Confidence            45556789999999998765444333334444444567888888764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.7e-06  Score=78.14  Aligned_cols=58  Identities=16%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      ...++++||++......+..|...++..... ...++++|.. ..+             +..|+.+|.++.+.
T Consensus       101 ~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~-~~~i~~~~~~-~~i-------------~~~l~sr~~~i~~~  158 (224)
T d1sxjb2         101 KHKIVILDEADSMTAGAQQALRRTMELYSNS-TRFAFACNQS-NKI-------------IEPLQSQCAILRYS  158 (224)
T ss_dssp             CCEEEEEESGGGSCHHHHHTTHHHHHHTTTT-EEEEEEESCG-GGS-------------CHHHHTTSEEEECC
T ss_pred             ceEEEEEecccccchhHHHHHhhhccccccc-eeeeeccCch-hhh-------------hhHHHHHHHHhhhc
Confidence            4569999999998877666665555544333 3455555542 222             23577788887776

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=5.2e-06  Score=74.53  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..++||||+|+|||+|+.++...+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            359999999999999999998876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.96  E-value=3.5e-05  Score=69.26  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceee
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV   97 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~   97 (438)
                      ..|.+++||||+|+|||+++..+...+......++
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~   75 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF   75 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEE
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcE
Confidence            45789999999999999999999999854434343

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=7.7e-06  Score=73.86  Aligned_cols=58  Identities=14%  Similarity=0.162  Sum_probs=39.6

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN  252 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld  252 (438)
                      +..+++|||++......+-.|..+++.-- .++.+|+++|.+ ..+             +..|+.+|..+.+.
T Consensus       108 ~~kviIide~d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~-~~l-------------l~tI~SRc~~i~~~  165 (207)
T d1a5ta2         108 GAKVVWVTDAALLTDAAANALLKTLEEPP-AETWFFLATREP-ERL-------------LATLRSRCRLHYLA  165 (207)
T ss_dssp             SCEEEEESCGGGBCHHHHHHHHHHHTSCC-TTEEEEEEESCG-GGS-------------CHHHHTTSEEEECC
T ss_pred             ccceEEechhhhhhhhhhHHHHHHHHhhc-ccceeeeeecCh-hhh-------------hhhhcceeEEEecC
Confidence            46799999999988765555555555321 345677777764 222             34578899999887

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.82  E-value=8.9e-06  Score=73.95  Aligned_cols=30  Identities=30%  Similarity=0.545  Sum_probs=26.9

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ....|+|++||||||||||+|+.++...+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            446789999999999999999999998874

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=5.1e-05  Score=70.42  Aligned_cols=50  Identities=22%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG  229 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g  229 (438)
                      +--.|+|||++.++...+..|.++++.-.          ...+.+|+|||.++.++...|
T Consensus        94 ~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~  153 (247)
T d1ny5a2          94 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEG  153 (247)
T ss_dssp             TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTT
T ss_pred             CCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcC
Confidence            44689999999999888777776665311          113569999999998887655

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=3e-05  Score=74.65  Aligned_cols=41  Identities=24%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             CCCCc-eEEEccCCCCHhHHHHHHHHhhh--cccceeeechhhh
Q psy318           63 KQPKG-LYIYGAVGGGKTMLMDIFYESCE--TKQKQRVHFNKFM  103 (438)
Q Consensus        63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~--~~~k~R~Hf~~fm  103 (438)
                      ..|.| ++++||+|+|||.|+..+...+-  ...-.++...+|.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            45665 56679999999999999999883  2234556555554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00011  Score=70.45  Aligned_cols=40  Identities=23%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CCCCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           63 KQPKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      ..|.| +++.||+|+|||.|+..+...+..+ -.|+...+|+
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~-~i~~d~s~~~   89 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIE-LLRFDMSEYM   89 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCE-EEEEEGGGCS
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCC-eeEecccccc
Confidence            34554 7888999999999999999988643 5677766664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00014  Score=65.60  Aligned_cols=71  Identities=17%  Similarity=0.243  Sum_probs=43.7

Q ss_pred             HHHHHhhcC--CeEEEecCCCCChhh----HHHHHHHHHHHHHCC-CEEEEecCCChhhhhcCCCCcCCcccHHHHHHhh
Q psy318          173 VANDIISKT--WLICFDEFQVTDIAD----AMILKRLFTELFQLG-VVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTY  245 (438)
Q Consensus       173 va~~~~~~~--~lLc~DEf~v~d~~d----a~iL~~Lfn~l~~~g-~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~  245 (438)
                      +.+++....  -+|+|||++.+-.+.    .+-+.+++.-.+++| ..+|+|+.  |+++.+- +.++      ..|..+
T Consensus       106 il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT--~eey~~~-~e~d------~aL~rr  176 (195)
T d1jbka_         106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT--LDEYRQY-IEKD------AALERR  176 (195)
T ss_dssp             HHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEEC--HHHHHHH-TTTC------HHHHTT
T ss_pred             HHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCC--HHHHHHH-HHcC------HHHHhc
Confidence            345543333  389999999863221    123556777777787 56766654  5666543 3333      368888


Q ss_pred             ccccccc
Q psy318          246 CDVASLN  252 (438)
Q Consensus       246 ~~vv~ld  252 (438)
                      +++|.++
T Consensus       177 F~~I~V~  183 (195)
T d1jbka_         177 FQKVFVA  183 (195)
T ss_dssp             EEEEECC
T ss_pred             CCEeecC
Confidence            8998887

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.0015  Score=60.25  Aligned_cols=49  Identities=18%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus       143 ~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~  192 (238)
T d1vpla_         143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN  192 (238)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47899999999999999987 79888888999999999999888888766

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.10  E-value=0.00087  Score=61.89  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus       149 ~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~  198 (240)
T d1ji0a_         149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN  198 (240)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47899999999999999987 79998899999999999998877776654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.0018  Score=57.88  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=37.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.+++++++||--. +|+.....+.+++..+...+..+|+++..
T Consensus       135 ~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~  184 (200)
T d1sgwa_         135 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE  184 (200)
T ss_dssp             HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred             HHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence            46889999999999999976 68877777777777776555566666653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0011  Score=61.28  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+.+. |..+|++|.-
T Consensus       150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  200 (240)
T d3dhwc1         150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE  200 (240)
T ss_dssp             HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred             HHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence            47899999999999999886 7998888899999998765 8877777654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.0033  Score=58.56  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSN  219 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN  219 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|+.|.
T Consensus       159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtH  207 (258)
T d1b0ua_         159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH  207 (258)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeC
Confidence            47899999999999999987 7988888889999999998876555543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.02  E-value=0.0041  Score=57.02  Aligned_cols=49  Identities=18%  Similarity=0.189  Sum_probs=41.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+..+..+.+++..+.+ .|..+|++|..
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  205 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC
Confidence            47899999999999999987 799888889999999875 47777777754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00018  Score=60.35  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|+|+|++|+|||+|+..+...+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            6899999999999999999998884

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.01  E-value=0.00084  Score=55.15  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCC-EEEEe
Q psy318          177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGV-VVVAT  217 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~-~lV~T  217 (438)
                      .+.+.+++++||+|..+....+.+..++..+...+. .+|..
T Consensus        91 ~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~  132 (136)
T d1a1va1          91 SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLA  132 (136)
T ss_dssp             GGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred             hhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence            456789999999999887666666666665544443 34443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.98  E-value=0.00011  Score=66.29  Aligned_cols=25  Identities=28%  Similarity=0.182  Sum_probs=22.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+|||||||+|||+++.+++..+.
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999873

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0015  Score=60.07  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|..
T Consensus       140 aiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  190 (232)
T d2awna2         140 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  190 (232)
T ss_dssp             CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            47999999999999999887 79888888888888875 458877777654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.96  E-value=0.0012  Score=66.17  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH
Q psy318            8 SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus         8 ~~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .++|-+.|+.+ ++--+-.|.+=+.+..++-+-|+++..-.+        + +..-.|++++|.||+|||||.|+..++.
T Consensus         2 ~ltP~~i~~~L-d~yVvGQ~~AKk~lsvav~nhyrR~~~~~~--------~-~~ei~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_           2 EMTPREIVSEL-DQHIIGQADAKRAVAIALRNRWRRMQLQEP--------L-RHEVTPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCHHHHHHHH-HTTCCSCHHHHHHHHHHHHHHHHHHHSCTT--------T-TTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHh-cCcccCcHHHHHHHHHHHHHHHHHhhcccc--------c-ccccccccEEEECCCCCCHHHHHHHHHH
Confidence            46788887766 566666677777767777676776642111        0 1234689999999999999999999998


Q ss_pred             hhhcc
Q psy318           88 SCETK   92 (438)
Q Consensus        88 ~l~~~   92 (438)
                      .+.+|
T Consensus        72 ~l~VP   76 (443)
T d1g41a_          72 LANAP   76 (443)
T ss_dssp             HTTCC
T ss_pred             HhCCC
Confidence            77554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00048  Score=63.23  Aligned_cols=48  Identities=25%  Similarity=0.387  Sum_probs=40.7

Q ss_pred             HHHHHhh-------cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          173 VANDIIS-------KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       173 va~~~~~-------~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      +|+.++.       +++||++||--. +|+..+..+.+++..+.+.|..+|++|..
T Consensus       136 iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd  191 (231)
T d1l7vc_         136 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD  191 (231)
T ss_dssp             HHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5777765       568999999987 79988888999999999999888888765

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.92  E-value=0.0061  Score=56.19  Aligned_cols=50  Identities=16%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|...
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~  200 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ  200 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH
Confidence            47899999999999999887 7988888899999998655 88888887664

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.92  E-value=0.0025  Score=59.11  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=43.1

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|++||--. +|+.....+++++..+.+.|..+|++|...
T Consensus       160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl  210 (254)
T d1g6ha_         160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL  210 (254)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence            47899999999999999887 798888889999999999998777776553

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.91  E-value=0.0032  Score=58.10  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+ .|..+|++|.-
T Consensus       146 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd  196 (239)
T d1v43a3         146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD  196 (239)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            47899999999999999887 799888889999999865 48877777765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.81  E-value=0.0022  Score=51.28  Aligned_cols=44  Identities=14%  Similarity=0.079  Sum_probs=27.0

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHH-HCCCEEEEecCCCh
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELF-QLGVVVVATSNRAP  222 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~P  222 (438)
                      +.+.+++++||.|..+.... ....+++.+. .....+|+-|-.||
T Consensus        96 ~~~~~lvIiDEaH~~~~~~~-~~~~~~~~~~~~~~~~~l~lTATPp  140 (140)
T d1yksa1          96 VVNWEVIIMDEAHFLDPASI-AARGWAAHRARANESATILMTATPP  140 (140)
T ss_dssp             CCCCSEEEETTTTCCSHHHH-HHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred             ccceeEEEEccccccChhhH-HHHHHHHHHhhCCCCCEEEEEcCCC
Confidence            35789999999998864432 2223344443 23456666666665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0018  Score=59.71  Aligned_cols=49  Identities=18%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+|+.++.++++|+|||.-. +|+..+..+..++..+. .|..+|+.|.+.
T Consensus       149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l  198 (241)
T d2pmka1         149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRL  198 (241)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSG
T ss_pred             hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            47899999999999999987 78888888888888876 466677776663

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.75  E-value=0.00047  Score=57.59  Aligned_cols=29  Identities=14%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             CCCc--eEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           64 QPKG--LYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        64 ~pkG--lyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      ..+|  |||.|.+|+|||+++.++...+..+
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3456  8889999999999999999988643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.75  E-value=0.002  Score=59.65  Aligned_cols=49  Identities=14%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus       136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd  186 (240)
T d2onka1         136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD  186 (240)
T ss_dssp             HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred             HHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            47899999999999999887 7988888889999888654 7766666654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0015  Score=61.38  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .+++.|.|++|+|||.|+..++..+
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            4689999999999999999998776

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.69  E-value=0.00047  Score=64.25  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||.-. +|...+..+..++..+.. +..+|+.|..
T Consensus       162 aiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~  210 (253)
T d3b60a1         162 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHR  210 (253)
T ss_dssp             HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             HHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence            47899999999999999997 688888888888888865 5556655554

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.68  E-value=0.012  Score=57.11  Aligned_cols=41  Identities=12%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML  104 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~  104 (438)
                      .+|..+++.||+|+|||.|+.+++..+.. .-.|+--.+|+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~~-~~ir~D~s~~~e  106 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLDI-PIAISDATSLTE  106 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGGGCC-
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhccc-ceeehhhhhccc
Confidence            45788999999999999999999877643 245666667765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.0011  Score=65.37  Aligned_cols=52  Identities=12%  Similarity=0.248  Sum_probs=24.3

Q ss_pred             HHHHHhhc--CCeEEEecCCCCCh----hhHHHHHHHHHHHHHCC-CEEEEecCCChhhhh
Q psy318          173 VANDIISK--TWLICFDEFQVTDI----ADAMILKRLFTELFQLG-VVVVATSNRAPDDLY  226 (438)
Q Consensus       173 va~~~~~~--~~lLc~DEf~v~d~----~da~iL~~Lfn~l~~~g-~~lV~TSN~~P~~L~  226 (438)
                      +..++...  .-+|+|||++.+-.    ...+-+.+++.-.+.+| ..+|+|+.  |++..
T Consensus       106 i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT--~~ey~  164 (387)
T d1qvra2         106 VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT--LDEYR  164 (387)
T ss_dssp             HHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC--HHHHH
T ss_pred             HHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecC--HHHHH
Confidence            34444332  34799999998632    22456788888888888 56776655  55553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.66  E-value=0.0072  Score=55.32  Aligned_cols=49  Identities=12%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+ .|..+|++|..
T Consensus       137 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd  187 (229)
T d3d31a2         137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD  187 (229)
T ss_dssp             HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            47899999999999999887 799888889999999865 57777776655

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.51  E-value=0.00068  Score=66.22  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=27.0

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+.+++++||||||||||+++.++.+.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            556778999999999999999999999884

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.46  E-value=0.00084  Score=56.25  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=23.1

Q ss_pred             CCc--eEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKG--LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkG--lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |+|  |.|.|++|+|||++...+...+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            556  99999999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.39  E-value=0.00048  Score=64.37  Aligned_cols=48  Identities=15%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|+|||.-. +|...+..+...+..+.. +..+|+.|.+
T Consensus       164 ~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~  212 (255)
T d2hyda1         164 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR  212 (255)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            47899999999999999997 688877788888887764 5566666665

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0053  Score=56.75  Aligned_cols=49  Identities=16%  Similarity=0.246  Sum_probs=38.5

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||.-. +|...+..+..++..+.+. |..+|+.|..
T Consensus       161 aiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~  211 (251)
T d1jj7a_         161 ALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH  211 (251)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC
T ss_pred             EEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCC
Confidence            47899999999999999987 7887777777777776543 6667766655

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.001  Score=54.31  Aligned_cols=26  Identities=15%  Similarity=0.470  Sum_probs=23.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |.|+|.|++|+|||.+..++...+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57999999999999999999988843

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.25  E-value=0.0051  Score=56.82  Aligned_cols=49  Identities=22%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....+.+++..+.+ .|..+|++|..
T Consensus       150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd  200 (242)
T d1oxxk2         150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD  200 (242)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             HHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC
Confidence            47899999999999999887 788888888999999854 48777776654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.00092  Score=55.73  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +|-|.|.|++|+|||+|+.++...+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999988774

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0037  Score=55.55  Aligned_cols=61  Identities=13%  Similarity=0.040  Sum_probs=41.9

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSN  254 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g  254 (438)
                      .+..+++|||++......+-+|..+++.-- .++.+|++||.+ ..+             ++-|+.+|.++.+...
T Consensus        78 ~~~KviIId~ad~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~-~~l-------------l~TI~SRC~~i~~~~p  138 (198)
T d2gnoa2          78 YTRKYVIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRRW-HYL-------------LPTIKSRVFRVVVNVP  138 (198)
T ss_dssp             SSSEEEEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESCG-GGS-------------CHHHHTTSEEEECCCC
T ss_pred             CCCEEEEEeCccccchhhhhHHHHHHhCCC-CCceeeeccCCh-hhC-------------HHHHhcceEEEeCCCc
Confidence            356799999999998776666655555321 345677777764 222             3568899999888643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0087  Score=57.96  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcC
Q psy318          180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKN  228 (438)
Q Consensus       180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~  228 (438)
                      ..++|++||....+...   +..++..+ ..+..+|+.++.  .+|.+-
T Consensus       261 ~~d~lIIDEaSmv~~~l---~~~ll~~~-~~~~~lILvGD~--~QLppV  303 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPM---MSRLIDAL-PDHARVIFLGDR--DQLASV  303 (359)
T ss_dssp             SCSEEEECSGGGCBHHH---HHHHHHTC-CTTCEEEEEECT--TSGGGT
T ss_pred             ccceeeehhhhccCHHH---HHHHHHHh-cCCCEEEEECCh--hhccCC
Confidence            57999999999987542   33444444 346788898874  666653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.01  E-value=0.0019  Score=53.70  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +|-|+|.|++|+|||+++.++...++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56799999999999999999999885

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.88  E-value=0.0026  Score=58.09  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=27.3

Q ss_pred             hhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhhcc
Q psy318          341 CQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFS  393 (438)
Q Consensus       341 a~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~Lf~  393 (438)
                      ...|+.|+|+..-.++..+       ..++..++..+..+++.++ |=..+|.
T Consensus       204 ~~~~~~i~vDE~QD~~~~~-------~~~l~~~~~~~~~~~~~GD-~~Q~Iy~  248 (306)
T d1uaaa1         204 QNKIRYLLVDEYQDTNTSQ-------YELVKLLVGSRARFTVVGD-DDQSIYS  248 (306)
T ss_dssp             HTTCSEEEESCGGGCBHHH-------HHHHHHHHTTTCCEEEECC-GGGCCCG
T ss_pred             HHHhhHHHHHHHHHhhHHH-------HhhhhhcccCCCcceEeec-Cccceec
Confidence            3578888888887664322       2245567777777776533 4444553

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.86  E-value=0.041  Score=50.60  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      .-|.|||..|.|||.|+..+|+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            457899999999999999999874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.78  E-value=0.0024  Score=52.97  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      -+.|.|+||||||+++.++...+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999987763

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.75  E-value=0.0025  Score=52.59  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |=++|.|++|+|||+++..+...+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3489999999999999999987663

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.73  E-value=0.025  Score=49.73  Aligned_cols=43  Identities=23%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+++-++|.+|+..+-       +                 ..+| +|.+|+|+|||.++-.+...+
T Consensus        67 ~~~~Lr~yQ~eav~~~~-------~-----------------~~~~-ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          67 AEISLRDYQEKALERWL-------V-----------------DKRG-CIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CCCCCCHHHHHHHHHHT-------T-----------------TSEE-EEEESSSTTHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHH-------h-----------------CCCc-EEEeCCCCCceehHHhHHHHh
Confidence            34667789998876321       0                 1234 578999999999887666554

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.69  E-value=0.025  Score=51.11  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=33.4

Q ss_pred             hcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~  221 (438)
                      .+-.|+++||+.. +++.+.. +...+++.|.+.+..+++|+...
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            4457999999998 5655543 56678888888888889999874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.029  Score=50.92  Aligned_cols=43  Identities=14%  Similarity=0.045  Sum_probs=29.4

Q ss_pred             hcCCeEEEecCCC-CChhhHHH-HHHHHHHHHHCC-CEEEEecCCC
Q psy318          179 SKTWLICFDEFQV-TDIADAMI-LKRLFTELFQLG-VVVVATSNRA  221 (438)
Q Consensus       179 ~~~~lLc~DEf~v-~d~~da~i-L~~Lfn~l~~~g-~~lV~TSN~~  221 (438)
                      .+-.|+++||+.. +++.+... ...+++.+...+ ..+|+|+...
T Consensus       119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~  164 (234)
T d1wb9a2         119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  164 (234)
T ss_dssp             CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence            3456999999998 56665544 456677776654 5677777653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.51  E-value=0.0035  Score=51.37  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      =|.|.|+||+|||+|+..+...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999977543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.50  E-value=0.022  Score=51.69  Aligned_cols=47  Identities=15%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHH-HCCCEEEEecCCChhhhh
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELF-QLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~P~~L~  226 (438)
                      .+.+++++||+|..+. ++..+..++..+. ..+..+++.|-.+|....
T Consensus        99 ~~~~~vViDE~H~~~~-~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~  146 (305)
T d2bmfa2          99 PNYNLIIMDEAHFTDP-ASIAARGYISTRVEMGEAAGIFMTATPPGSRD  146 (305)
T ss_dssp             CCCSEEEEESTTCCSH-HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred             cceeEEEeeeeeecch-hhHHHHHHHHHhhccccceEEEeecCCCccee
Confidence            5689999999998763 3334444555444 344677777777665443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0087  Score=56.15  Aligned_cols=48  Identities=10%  Similarity=0.044  Sum_probs=32.8

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHH-HHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKR-LFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~-Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|+.....++. ++..+ ..+..+|+.|.+
T Consensus       168 ~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~  217 (281)
T d1r0wa_         168 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSK  217 (281)
T ss_dssp             HHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSC
T ss_pred             HHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEech
Confidence            47899999999999999886 68765554443 33333 345566666654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.41  E-value=0.032  Score=50.35  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=25.5

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM  103 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm  103 (438)
                      .=++|.|+||+|||+++.-+...+...++.++-|..+-
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            34778899999999777666554434445566554443

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.40  E-value=0.013  Score=50.65  Aligned_cols=48  Identities=13%  Similarity=0.076  Sum_probs=32.0

Q ss_pred             hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318          179 SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       179 ~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~  227 (438)
                      ..+++|++||+-..   ..-+...+..+++.. ..+.-||+|+..+|++|-.
T Consensus        93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~r-p~~~evVlTGr~~p~~L~e  143 (157)
T d1g5ta_          93 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILD  143 (157)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHH
T ss_pred             CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhC-CCCCEEEEECCCCCHHHHH
Confidence            45999999998761   111222344455442 3457899999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.38  E-value=0.0024  Score=60.32  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+|+|.|+||+|||||+..+..-||
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            4799999999999999999987653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.27  E-value=0.0052  Score=52.88  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |--|+|.||+|||||+++..+.+.+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            44599999999999999999988774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.26  E-value=0.0052  Score=52.16  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|+|.|++|+|||++..+++..+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998884

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.013  Score=55.84  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=23.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+++++.|++|+|||+||.++...++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            36899999999999999999998886

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.00  E-value=0.0069  Score=52.13  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|+=|.|.||||||||+++..+.+.+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3466789999999999999999988764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0071  Score=50.23  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=22.7

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ++=+.|.|++|||||+++.++...+.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45588899999999999999988774

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.85  E-value=0.0075  Score=53.24  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=23.2

Q ss_pred             CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           64 QPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..+.+.|||+.|+|||.|+..+...+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            357899999999999999999877663

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.83  E-value=0.0077  Score=50.90  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |.++|.|++|+|||.+..+++..+..
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56999999999999999999988843

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.82  E-value=0.0099  Score=54.74  Aligned_cols=16  Identities=38%  Similarity=0.615  Sum_probs=14.1

Q ss_pred             ceEEEccCCCCHhHHH
Q psy318           67 GLYIYGAVGGGKTMLM   82 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lm   82 (438)
                      .++|.|++|||||+.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4999999999999765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.75  E-value=0.0063  Score=50.56  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++=|+|.|++|||||+++.++...+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4558999999999999999997655

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.011  Score=50.83  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=22.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.|.=|.|.|.||||||+++..+....
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            567889999999999999998876543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0052  Score=52.12  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      .=|+|+|.+|+|||+|+.++...+..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34678899999999999999887743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.73  E-value=0.0089  Score=51.31  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.||||||||++...+...+.
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            66789999999999999987763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.0096  Score=51.83  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=21.5

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.|.||+|+|||.||..+....+
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4599999999999999999877653

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.032  Score=51.82  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH
Q psy318           13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      ..++..++.=-+.+.+.|.+|+.++..   .+..                +.|..-+|+|.||||||.++-....
T Consensus        71 ~l~~~f~~~LPFeLT~~Q~~ai~ei~~---d~~~----------------~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          71 KLAEEFIKSLPFKLTNAQKRAHQEIRN---DMIS----------------EKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHH---HHHS----------------SSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHhhccccCCchHHHHHHHHHH---Hhhc----------------cCcceeeeeccccccccHHHHHHHH
Confidence            456677777888999999998886443   4432                3455679999999999988665543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.53  E-value=0.034  Score=47.89  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=22.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |+|.|+.|+|||+++..+..++-.
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEecCCCccHHHHHHHHHhhccc
Confidence            889999999999999999998854

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.03  Score=51.10  Aligned_cols=59  Identities=17%  Similarity=0.135  Sum_probs=42.6

Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhh
Q psy318           12 SKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESC   89 (438)
Q Consensus        12 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l   89 (438)
                      -+.|....+.=-+.+.+.|.+++.+...   .+.                .+.|...+|+|.||+|||.+.=.. +.++
T Consensus        42 ~~~~~~~~~~lP~~lt~~Q~~~~~~i~~---~~~----------------~~~~~~~LL~GdvGsGKT~V~~~a~~~~~  101 (233)
T d2eyqa3          42 REQYQLFCDSFPFETTPDQAQAINAVLS---DMC----------------QPLAMDRLVCGDVGFGKTEVAMRAAFLAV  101 (233)
T ss_dssp             HHHHHHHHHTCCSCCCHHHHHHHHHHHH---HHH----------------SSSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             HHHHHhhhhccccccchhHHHHHHHHHH---HHh----------------ccCccCeEEEcCCCCCcHHHHHHHHHHHH
Confidence            4567777878888999999988875544   332                134567899999999999876444 4444

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.48  E-value=0.012  Score=49.58  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |+ +.|.|++|+|||++..+++..+.
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHhC
Confidence            55 77779999999999999998874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.18  Score=44.93  Aligned_cols=49  Identities=16%  Similarity=0.128  Sum_probs=32.2

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc---------ccceeeechh---hhHHHHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET---------KQKQRVHFNK---FMLDVHAKIHEVK  114 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~---------~~k~R~Hf~~---fm~~v~~~l~~~~  114 (438)
                      .=..|+|++|+|||+|+-.+.-++..         ....++-|..   ....++++++.+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~   90 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG   90 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHHh
Confidence            44679999999999999887666531         1233454433   4466677776654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.31  E-value=0.014  Score=48.41  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |=|.|.|++|+|||++...+...+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999988853

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.28  E-value=0.012  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.||||||||+++.++...+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999987763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.25  E-value=0.017  Score=49.53  Aligned_cols=52  Identities=27%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      ..+++.++|.++++.+.       +                   +.+++.+|+|+|||.++-++........+.++-|
T Consensus         6 ~~~~pr~~Q~~~~~~~~-------~-------------------~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~   57 (200)
T d1wp9a1           6 DLIQPRIYQEVIYAKCK-------E-------------------TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLM   57 (200)
T ss_dssp             HHHCCCHHHHHHHHHGG-------G-------------------SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEE
T ss_pred             CCCCCCHHHHHHHHHHh-------c-------------------CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence            34678999998876331       1                   2367899999999986555443332233445544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.013  Score=48.23  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=21.2

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +-|.|++|||||+|+..+...+.
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.12  E-value=0.013  Score=49.74  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.||||||||++...+...+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999988773

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.08  E-value=0.031  Score=46.95  Aligned_cols=23  Identities=30%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |-|.|++|||||+|+..+.+.+.
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56999999999999999988775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.014  Score=50.38  Aligned_cols=25  Identities=24%  Similarity=0.514  Sum_probs=21.7

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.|.||+|+|||.|++.+....+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            5699999999999999999877643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.99  E-value=0.015  Score=49.61  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |.|.|+||||||+++..+...+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999998774

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.016  Score=49.89  Aligned_cols=26  Identities=15%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .+=+.|.||||||||+++.++...+.
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34589999999999999999987663

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.77  E-value=0.022  Score=47.46  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      +.|.|++|+|||+++..+...+..+
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            6789999999999999999988643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.017  Score=49.40  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .=|.|.||||+|||+++..+.+.+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999988763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.50  E-value=0.02  Score=49.28  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.1

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++=|+|.||||||||+++..+....
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5669999999999999999997765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.24  E-value=0.023  Score=48.34  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +.|.||||||||++...+...+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999998776

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.18  E-value=0.098  Score=45.71  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF  102 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f  102 (438)
                      +...-++|+|+||+|||.|+.-+...+. .....+.|-.+
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~-~~~~~~~~is~   62 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENAC-ANKERAILFAY   62 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHH-TTTCCEEEEES
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHH-Hhccccceeec
Confidence            4456699999999999999988877763 23344555433

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.026  Score=48.16  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +=++|.||+|+|||.|++.+....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            448899999999999999997664

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.026  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.|.||||||||++...+...+.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999987663

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.93  E-value=0.028  Score=47.96  Aligned_cols=24  Identities=17%  Similarity=0.164  Sum_probs=21.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =|.|.|.||||||+|+..+...+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999988775

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.87  E-value=0.027  Score=48.86  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      -|.|.|+||||||++...+...+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.73  E-value=0.029  Score=50.41  Aligned_cols=30  Identities=17%  Similarity=0.191  Sum_probs=25.6

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ..|..+.+.||||+++|||++++++.+.+.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            345668999999999999999999987773

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.66  E-value=0.031  Score=48.07  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=25.4

Q ss_pred             CCCCCceEEEccCCCCHhHHHHH-HHHhhhcccceeeech
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDI-FYESCETKQKQRVHFN  100 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~-f~~~l~~~~k~R~Hf~  100 (438)
                      .+...=+.|+|++|+|||+|+-- .++.+. ..+..+.|-
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~-~~~~~~~~~   61 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFV   61 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEE
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCcccc
Confidence            34556699999999999999854 444442 333455553

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.62  E-value=0.035  Score=48.44  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.+.|++|+|||+|+..+...+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            57899999999999999977664

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.038  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ++|.||+|+|||.|++.+....
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999886653

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.28  E-value=0.25  Score=43.40  Aligned_cols=76  Identities=13%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318           12 SKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        12 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +..+++....+.-++=+.|.+++..+-.                         .+.+.+.+|+|+|||...-+..-... 
T Consensus        30 ~~~~~~~~~~~~~~p~~~Q~~~i~~~l~-------------------------g~~~~i~apTGsGKT~~~~~~~~~~~-   83 (237)
T d1gkub1          30 LKEFVEFFRKCVGEPRAIQKMWAKRILR-------------------------KESFAATAPTGVGKTSFGLAMSLFLA-   83 (237)
T ss_dssp             HHHHHHHHHTTTCSCCHHHHHHHHHHHT-------------------------TCCEECCCCBTSCSHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHC-------------------------CCCEEEEecCCChHHHHHHHHHHHHH-
Confidence            5568888888877899999998875421                         25688999999999975433322222 


Q ss_pred             ccceeeec----hhhhHHHHHHHHHH
Q psy318           92 KQKQRVHF----NKFMLDVHAKIHEV  113 (438)
Q Consensus        92 ~~k~R~Hf----~~fm~~v~~~l~~~  113 (438)
                      .++.|+.|    .....++.+.+.++
T Consensus        84 ~~~~rvliv~Pt~~La~Q~~~~l~~~  109 (237)
T d1gkub1          84 LKGKRCYVIFPTSLLVIQAAETIRKY  109 (237)
T ss_dssp             TTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred             HhcCeEEEEeccHHHHHHHHHHHHHH
Confidence            22345555    44555555555554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.26  E-value=0.041  Score=47.39  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=22.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +...=+.|+|++|+|||.++.-|..++.
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3445589999999999999998876664

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.044  Score=45.53  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +..+=+.|+|++|+|||.|+--|...+
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344558999999999998887776554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=91.92  E-value=0.59  Score=41.44  Aligned_cols=50  Identities=14%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             HhhcCCeEEEecCCCCChhh-H---HHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          177 IISKTWLICFDEFQVTDIAD-A---MILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d~~d-a---~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      ...+.+++++|=-+.....+ .   ..|..+.+......+.+|+.++..++.+.
T Consensus        91 ~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~  144 (211)
T d1j8yf2          91 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYD  144 (211)
T ss_dssp             HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred             hccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHH
Confidence            35678999999877643222 1   23455555554334567777777665554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.045  Score=46.97  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =|.|.||||||||++...+.+.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            477889999999999999988774

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.85  Score=40.40  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec---hhhhHHHHHHHHHHH
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF---NKFMLDVHAKIHEVK  114 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf---~~fm~~v~~~l~~~~  114 (438)
                      ..|.=+.|.||+|+|||+.+-=++..+. .+++++-+   ..|=.--.++|..+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a   60 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWG   60 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEecccccccchhhhhhhh
Confidence            3456688999999999987666665554 33445544   333333334444443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.051  Score=47.12  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |-|.|++|||||+|+..+.+.+.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999988773

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.44  E-value=0.052  Score=48.05  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +.=|+|+|.+|+|||+|+..+...+.
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34599999999999999999988774

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.40  E-value=0.052  Score=46.99  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |-|.||||+|||+++.++...+..
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            457799999999999999988853

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=91.16  E-value=0.88  Score=40.01  Aligned_cols=50  Identities=20%  Similarity=0.006  Sum_probs=30.4

Q ss_pred             HhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318          177 IISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAPDDLY  226 (438)
Q Consensus       177 ~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~  226 (438)
                      .....+++++|=.+...  ...-..|..+.+..-..-+.+|+.++...+.+.
T Consensus        89 ~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~  140 (207)
T d1ls1a2          89 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS  140 (207)
T ss_dssp             HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH
T ss_pred             hhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH
Confidence            35789999999888743  333234555555443344567777777655443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.055  Score=47.70  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=22.3

Q ss_pred             CceEEE--ccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIY--GAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~--G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ||.+|.  |+.|+|||+++.++.+.+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            677777  9999999999999999885

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.061  Score=46.67  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +.|-|+.|+|||++++.+...+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            445599999999999999998853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.019  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceEEEccCCCCHhHHHHHHHHhhh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      =..|+|+.|+|||.|++|+.-.+-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            357889999999999999988773

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.97  E-value=0.069  Score=49.33  Aligned_cols=31  Identities=16%  Similarity=0.398  Sum_probs=26.1

Q ss_pred             ccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           60 DKVKQPKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        60 ~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      +..+..+-++||||+++|||++++++...+.
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3445568899999999999999999988773

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.94  E-value=0.11  Score=50.38  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=23.6

Q ss_pred             CCc-eEEEccCCCCHhHHHHHHHHhhhcc
Q psy318           65 PKG-LYIYGAVGGGKTMLMDIFYESCETK   92 (438)
Q Consensus        65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~   92 (438)
                      ++| +++.||+|+|||+.|.++.+.+..+
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            445 6789999999999999999988543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.065  Score=46.09  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             CceEEEccCCCCHhHHHHHHHHh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      |.|.|.||.|+|||.|++.+...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            67999999999999999988654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=90.76  E-value=1.1  Score=39.43  Aligned_cols=50  Identities=14%  Similarity=-0.011  Sum_probs=30.9

Q ss_pred             hhcCCeEEEecCCCCC--hhhHHHHHHHHHHHH------HCCCEEEEecCCChhhhhc
Q psy318          178 ISKTWLICFDEFQVTD--IADAMILKRLFTELF------QLGVVVVATSNRAPDDLYK  227 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~------~~g~~lV~TSN~~P~~L~~  227 (438)
                      .++++++++|=-+...  ...-..|..+.+..-      .....+|+.++..++++..
T Consensus        86 ~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~  143 (207)
T d1okkd2          86 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ  143 (207)
T ss_dssp             HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH
T ss_pred             HCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH
Confidence            4678999999888753  222223444444432      1234788888888777664

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.53  E-value=0.054  Score=46.73  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=20.0

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      +..+=+.|+|+||+|||.|+--|..+
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            44456899999999999988666443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=90.32  E-value=0.081  Score=42.60  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=17.7

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|++|+|||.|++.+..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67999999999999998753

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.51  Score=38.69  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEec
Q psy318          178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATS  218 (438)
Q Consensus       178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TS  218 (438)
                      ..+++++++||.|..+  +   +..+...+.+.|..|++++
T Consensus        71 ~~~~d~I~IDEaQFf~--d---l~~~~~~~~~~~~~Viv~G  106 (133)
T d1xbta1          71 ALGVAVIGIDEGQFFP--D---IVEFCEAMANAGKTVIVAA  106 (133)
T ss_dssp             HHTCSEEEESSGGGCT--T---HHHHHHHHHHTTCEEEEEC
T ss_pred             hcccceEEeehhHHHH--H---HHHHHHHHHhcCCcEEEEE
Confidence            4689999999999985  2   4556677778898887765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.14  E-value=0.076  Score=46.33  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           63 KQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      +..+=+.|+|+||+|||.++--|..+.
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            444558999999999999988776554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.01  E-value=0.083  Score=45.40  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.|++|+|||.|++.+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999999965

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.95  E-value=0.29  Score=43.09  Aligned_cols=73  Identities=14%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             cEEEeeHHHHhcC------CCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhh
Q psy318          318 QILEATFDELCSR------DLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKL  391 (438)
Q Consensus       318 ~va~f~F~eLC~~------plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~L  391 (438)
                      .+++++-.++...      .-...++...-+..+.++|+||-.+.. ......-|..+|+.+++.+.++++++..+|.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~-~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l  144 (213)
T d1l8qa2          66 RVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG-KERTQIEFFHIFNTLYLLEKQIILASDRHPQKL  144 (213)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT-CHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred             ceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcC-chHHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence            3555555444332      224567788888999999999988743 355566688999999999999999999999988

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.85  E-value=0.098  Score=43.50  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      +-|.|.+|||||+|+..+...+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHh
Confidence            348999999999999999888853

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.82  E-value=0.089  Score=49.32  Aligned_cols=42  Identities=10%  Similarity=0.102  Sum_probs=31.0

Q ss_pred             CEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCCh
Q psy318          345 HTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPL  388 (438)
Q Consensus       345 ~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~  388 (438)
                      ..++++.|-.  .-+....++++.+|+.+-..++.++|+.+-|.
T Consensus       356 pililDE~d~--~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~  397 (427)
T d1w1wa_         356 PFFVLDEVDA--ALDITNVQRIAAYIRRHRNPDLQFIVISLKNT  397 (427)
T ss_dssp             SEEEESSTTT--TCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH
T ss_pred             CEEEEeCCCC--CCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            4577777742  23455688999999998777889999888553

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.72  E-value=0.083  Score=42.25  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|.|++|+|||.|++.+-.
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999998854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=89.61  E-value=0.066  Score=45.55  Aligned_cols=19  Identities=26%  Similarity=0.558  Sum_probs=16.5

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      +=|+|++|||||++++.|-
T Consensus         6 IgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3488999999999999883

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.91  E-value=0.089  Score=43.25  Aligned_cols=19  Identities=32%  Similarity=0.502  Sum_probs=17.7

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |.|.|++|+|||.|+..+-
T Consensus        16 I~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            9999999999999999883

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=88.64  E-value=0.12  Score=41.65  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      |.|.|.+|+|||.|+..+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.14  E-value=0.12  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      |=|.|+||+|||.|++.+...+
T Consensus        54 igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHHHHHH
Confidence            7799999999999999998765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.16  Score=43.90  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=22.4

Q ss_pred             cCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318           61 KVKQPKGLYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      ..+..+-+.|+|++|+|||.|.-.|....
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455569999999999999988776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.12  Score=49.14  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      .-|=|.|+||+|||.|++.+...+.
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            3488999999999999999987664

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.77  E-value=0.1  Score=44.21  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |-=|.|-|+.|+|||+|+.++...+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44588999999999999999988774

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=87.47  E-value=0.14  Score=42.02  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|-.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999999844

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.32  E-value=0.18  Score=42.98  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhc
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCET   91 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~   91 (438)
                      |.|-|..|+|||+++.++...+..
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            567899999999999999988853

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.17  Score=42.81  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             CceEEEcc-CCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           66 KGLYIYGA-VGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        66 kGlyL~G~-vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      |-+||.|. +|+|||++.-.+..++.. +..||-+-.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~-~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEC
Confidence            45899999 599999999999999863 356676643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.16  E-value=0.17  Score=41.77  Aligned_cols=20  Identities=15%  Similarity=0.391  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.17  Score=41.79  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      |.|.|++|+|||.|+..+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.02  E-value=0.15  Score=42.47  Aligned_cols=20  Identities=20%  Similarity=0.240  Sum_probs=18.3

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.+|+|||.|++++..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.99  E-value=0.15  Score=42.20  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |.|.|.+|+|||.|++.+.
T Consensus         3 V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999885

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=86.92  E-value=0.17  Score=41.84  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      =|.|.|++|+|||.|+..+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            399999999999999998844

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.16  Score=41.37  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=17.5

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      +.|.|.+|+|||.|++.+.
T Consensus         4 I~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999999885

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.71  E-value=1.8  Score=35.67  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             HHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccc
Q psy318          172 PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDV  248 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~v  248 (438)
                      .+.+...++++++++||.|..+...    -.....+...|..|++++=.      . -+.++.|.... .|...|+-
T Consensus        72 ~~~~~~~~~~dvI~IDE~QFf~d~~----~~~~~~l~~~g~~Viv~GLd------~-Df~~~~F~~~~-~Ll~~Ad~  136 (141)
T d1xx6a1          72 EILKYFEEDTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLD------M-DFRGKPFGPIP-ELMAIAEF  136 (141)
T ss_dssp             HHHHHCCTTCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECS------B-CTTSCBCTTHH-HHHHHCSE
T ss_pred             hhhhhhcccccEEEEeehhhccccH----HHHHHhheeCCcEEEEEEec------c-ccccCccchHH-HHHhhcCe
Confidence            3444556789999999999986322    12356666788888776532      2 24566665555 45555543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.68  E-value=0.31  Score=41.70  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=15.7

Q ss_pred             CceEEEccCCCCHhHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDI   84 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~   84 (438)
                      +.++|.+|+|+|||...-+
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            4689999999999987543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.64  E-value=0.22  Score=44.42  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=24.9

Q ss_pred             CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318           62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF   99 (438)
Q Consensus        62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf   99 (438)
                      +..|.=+.|.||+|+|||..+-=++..+. .+++++-+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~l   44 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVL   44 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEE
Confidence            35567789999999999987555555553 33445544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=86.57  E-value=0.16  Score=44.00  Aligned_cols=19  Identities=32%  Similarity=0.698  Sum_probs=16.5

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |=|+|+.|||||+++++|-
T Consensus         5 IgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3489999999999999883

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=86.40  E-value=0.16  Score=46.05  Aligned_cols=48  Identities=15%  Similarity=0.322  Sum_probs=38.4

Q ss_pred             HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318          172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR  220 (438)
Q Consensus       172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~  220 (438)
                      .+|+.++.++++|++||--. +|...+..+..++..+. .|..+|+.|.+
T Consensus       149 ~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~  197 (242)
T d1mv5a_         149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR  197 (242)
T ss_dssp             HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred             HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            47899999999999999987 67766666777788776 57777777765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=86.04  E-value=0.18  Score=41.51  Aligned_cols=20  Identities=30%  Similarity=0.386  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.+|+|||.|+..+-.
T Consensus        18 I~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            89999999999999998744

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.94  E-value=0.18  Score=41.65  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=18.4

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |-|.|.+|+|||.|++++..
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999999974

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=85.83  E-value=0.18  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      .+|++|.|++|+|||.|+-.+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            5899999999999999987764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.79  E-value=0.21  Score=43.47  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=19.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~   86 (438)
                      .+|++|.|++|+|||.|+-.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            5899999999999999987664

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.65  E-value=0.21  Score=41.13  Aligned_cols=20  Identities=35%  Similarity=0.355  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|+.|+|||.|+..|.+
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=85.56  E-value=0.19  Score=42.50  Aligned_cols=20  Identities=15%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |-|.|.||+|||.|++.+..
T Consensus        26 I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHhcC
Confidence            99999999999999999964

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.52  E-value=0.23  Score=41.05  Aligned_cols=20  Identities=30%  Similarity=0.331  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.50  E-value=0.22  Score=42.06  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             ceEEEccCCCCHhHHHHHHHHh
Q psy318           67 GLYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      -|.|.|++|+|||.|++.+.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=85.29  E-value=0.31  Score=46.27  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK  101 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~  101 (438)
                      |||-|+.|+|||+++.++.+.+... +.-+.|.+
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~~~-~~v~~~~E   41 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAASGG-SPTLYFPE   41 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGGCS-SCEEEECC
T ss_pred             EEEECCccCCHHHHHHHHHHHhccC-CCeEEEeC
Confidence            8999999999999999999988533 23334444

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.22  Score=43.44  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=23.4

Q ss_pred             CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      ||=+.|-|..|+|||+++.++.+.+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            56689999999999999999998874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=85.25  E-value=0.22  Score=41.04  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=17.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|++|+|||.|+..|-.
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            67889999999999998743

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.25  E-value=0.24  Score=40.84  Aligned_cols=20  Identities=40%  Similarity=0.637  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|++|+|||.|+..|.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.24  Score=41.17  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.+-|++|+|||.|+..|.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78899999999999998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.22  Score=41.11  Aligned_cols=20  Identities=35%  Similarity=0.551  Sum_probs=17.7

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.+|+|||.|+..|..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68899999999999988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.24  Score=40.88  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      +.|.|++|+|||.|+..|.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.96  E-value=0.25  Score=40.84  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|.|++|+|||.|+..|..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.96  E-value=0.23  Score=42.84  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             CCceEEEccCCCCHhHHHHHHHH
Q psy318           65 PKGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        65 pkGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      .+||+|.|++|+|||.|+-.+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            58999999999999998866643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.93  E-value=1.8  Score=35.45  Aligned_cols=58  Identities=31%  Similarity=0.361  Sum_probs=38.5

Q ss_pred             hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccc
Q psy318          179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDV  248 (438)
Q Consensus       179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~v  248 (438)
                      ..++++++||.|..+  +  .+..+.+.+...|..|++++=.      . -+.++.|.... .|-..|+.
T Consensus        78 ~~~dvI~IDE~QFf~--d--~i~~~~~~~~~~g~~Viv~GLd------~-Df~~~~F~~~~-~Li~~Ad~  135 (139)
T d2b8ta1          78 DETKVIGIDEVQFFD--D--RICEVANILAENGFVVIISGLD------K-NFKGEPFGPIA-KLFTYADK  135 (139)
T ss_dssp             TTCCEEEECSGGGSC--T--HHHHHHHHHHHTTCEEEEECCS------B-CTTSSBCTTHH-HHHHHCSE
T ss_pred             cCcCEEEechhhhcc--h--hHHHHHHHHHhcCceEEEEEec------c-ccccCcCccHH-HHHHhhCe
Confidence            468999999999985  2  2445677788889888877532      2 24556665554 45555543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.25  Score=40.96  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.3

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998855

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=0.23  Score=43.15  Aligned_cols=19  Identities=26%  Similarity=0.627  Sum_probs=16.5

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |-|+|+.|||||.+++.|-
T Consensus         6 IgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHH
Confidence            4589999999999999873

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=0.24  Score=41.59  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.52  E-value=0.27  Score=40.72  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+-|++|+|||.|+..+..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998854

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.26  Score=40.81  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.+|+|||.|+..|..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=84.06  E-value=0.29  Score=46.18  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+|..|..+-+.+..+.+.+.+                ...-.|+-||..|+||||.|
T Consensus        59 ~~~~~q~~vy~~v~~~v~~~l~----------------G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          59 DQQDTNVDVFKEVGQLVQSSLD----------------GYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             CTTCCHHHHHHHHHHHHGGGGG----------------TCCEEEEEECCTTSSHHHHH
T ss_pred             CCCCCHHHHHHHhhhhhcchhc----------------ccccceeeeeccCCcccccc
Confidence            3567788877765554433211                11235889999999999998

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.86  E-value=0.29  Score=40.97  Aligned_cols=20  Identities=40%  Similarity=0.635  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+.|.+|+|||.|+..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.3  Score=40.62  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.+-|++|+|||.|+..+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=83.59  E-value=0.58  Score=44.28  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhhcccceeeec------------hhhhHHHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF------------NKFMLDVHAKIHEV  113 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf------------~~fm~~v~~~l~~~  113 (438)
                      |||-|+.|+|||.++..+.+.+......-+.|            +.+...+++..++.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP~~~W~~~~g~~~l~~iy~~~~r~   65 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRR   65 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCchHhhhccCCCcHHHHHHHhHHhc
Confidence            89999999999999999998875332222232            34566666655544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=83.57  E-value=0.27  Score=40.96  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |-|.|.+|+|||.|++++..
T Consensus        11 V~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            67899999999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=0.28  Score=40.84  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998853

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.43  E-value=0.3  Score=40.63  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.3

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|.+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.41  E-value=0.32  Score=40.06  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.33  Score=40.01  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|.+|+|||.|+..|..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999998854

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.26  E-value=0.21  Score=44.97  Aligned_cols=43  Identities=9%  Similarity=0.082  Sum_probs=31.9

Q ss_pred             hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCC
Q psy318          342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVP  387 (438)
Q Consensus       342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~  387 (438)
                      ..-+.++|+.+- . .-+....+|++.++-.+- .++.++++.+.|
T Consensus       240 ~~~~~~~iDEpe-~-~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp  282 (308)
T d1e69a_         240 KPSPFYVLDEVD-S-PLDDYNAERFKRLLKENS-KHTQFIVITHNK  282 (308)
T ss_dssp             SCCSEEEEESCC-S-SCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred             ccCchhhhhhcc-c-cCCHHHHHHHHHHHHHhc-cCCEEEEEECCH
Confidence            344688887754 2 236778899999998775 478999998876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.33  Score=40.20  Aligned_cols=20  Identities=40%  Similarity=0.635  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|++|+|||.|+.-|.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.32  Score=39.79  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=0.29  Score=40.55  Aligned_cols=20  Identities=35%  Similarity=0.698  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|.+|+|||.|+..|..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=0.32  Score=40.47  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.3

Q ss_pred             eEEEccCCCCHhHHHHHHHHh
Q psy318           68 LYIYGAVGGGKTMLMDIFYES   88 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~   88 (438)
                      |.|.|++|+|||.|+..|...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788899999999999888653

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=83.02  E-value=0.25  Score=47.13  Aligned_cols=42  Identities=19%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+|..|..+-..+..+.+.+.+                ...-.|+-||..|+||||.|
T Consensus        51 ~~~~~q~~vy~~v~~lv~~~l~----------------G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          51 DGNATQDDVFEDTKYLVQSAVD----------------GYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             CTTCCHHHHHHTTTHHHHHHHT----------------TCEEEEEEECSTTSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc----------------CCceeeeccccCCCCccccc
Confidence            3566787776665555554422                11236999999999999998

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=0.33  Score=40.19  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=17.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|-|++|+|||.|+..|..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            67899999999999998743

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.39  E-value=0.26  Score=40.88  Aligned_cols=20  Identities=20%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|.|++|+|||.|+..+.+
T Consensus        15 IvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            89999999999999999854

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.38  E-value=0.28  Score=46.91  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      +.+|..|..+-+.+..+.+.+.+                ...-.|+-||..|+||||.|
T Consensus       100 f~~~~~Q~~Vy~~v~plv~~vl~----------------G~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         100 FHPLSSQSDIFEMVSPLIQSALD----------------GYNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             ECTTCCHHHHHTTTHHHHHHHHT----------------TCEEEEEEECSTTSSHHHHH
T ss_pred             ECCCCCccchHHHHHHHHHHHhc----------------ccceeEEeeccCCCccceEe
Confidence            34566788887766666655432                11135899999999999998

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.18  E-value=0.24  Score=41.20  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.3

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+.|++|+|||.|+..|.+
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998744

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.01  E-value=0.39  Score=40.24  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=18.3

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|-|.+|+|||.|+..|..
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.91  E-value=0.3  Score=40.79  Aligned_cols=20  Identities=20%  Similarity=0.311  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |-|.|.+|+|||.|++++..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999843

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.84  E-value=0.39  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             eEEEccCCCCHhHHHHHHHHhhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |=|.|++|||||+|.+.+...+.
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999877763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=81.74  E-value=0.4  Score=39.68  Aligned_cols=20  Identities=30%  Similarity=0.375  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998743

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.41  Score=39.65  Aligned_cols=20  Identities=30%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+.|++|+|||.|+..|..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988854

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.23  Score=42.92  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=21.9

Q ss_pred             CceEEEccCCCCHhHHHHHHHHhhh
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYESCE   90 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~~l~   90 (438)
                      |=+.|-|+-|+|||+++.++...+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3478999999999999999988774

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.49  E-value=0.42  Score=38.96  Aligned_cols=20  Identities=30%  Similarity=0.384  Sum_probs=18.2

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|..|+|||.|+..|.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.44  E-value=0.65  Score=41.75  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             CceEEEccCCCCHhHHHHHHHH
Q psy318           66 KGLYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        66 kGlyL~G~vG~GKT~Lmd~f~~   87 (438)
                      --|.|.|.+|+|||.|.+.++.
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHhC
Confidence            3599999999999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.23  Score=40.80  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |-|.|.+++|||.|++++.
T Consensus        19 I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          19 VAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEECTTSSHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            9999999999999998873

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.38  E-value=0.24  Score=41.24  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=8.5

Q ss_pred             eEEEccCCCCHhHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~   86 (438)
                      |.|-|.+|+|||.|++.+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEECCCCC----------
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998664

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=81.29  E-value=0.3  Score=40.75  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=17.9

Q ss_pred             ceEEEccCCCCHhHHHHHHH
Q psy318           67 GLYIYGAVGGGKTMLMDIFY   86 (438)
Q Consensus        67 GlyL~G~vG~GKT~Lmd~f~   86 (438)
                      =|.|.|++|+|||.|+..+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999999873

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=81.28  E-value=0.5  Score=44.39  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHH-HHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318           25 QEDKHQEQIVKQL-DNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM   82 (438)
Q Consensus        25 ~~D~~Q~~a~~~L-~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm   82 (438)
                      .+|..|..+-..+ ..+.+.+.+                ...--|+-||..|+||||.|
T Consensus        56 ~~~~~q~~vy~~~~~~lv~~~l~----------------G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          56 GASTKQIDVYRSVVCPILDEVIM----------------GYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHT----------------TCEEEEEEEECTTSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhHHHHhc----------------cCCceEEeeeeccccceEEe
Confidence            3566788776553 445444321                11135999999999999988

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.26  E-value=0.71  Score=39.42  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             HHHHHcCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318           16 YEKLSNNEI-QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML   81 (438)
Q Consensus        16 ~~~v~~g~l-~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L   81 (438)
                      .+.+.+.++ ++-|-|.+++..+-.                         .+.+++..++|||||+-
T Consensus        13 ~~~l~~~g~~~pt~iQ~~aip~~l~-------------------------G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_          13 IEAIKTLRFYKPTEIQERIIPGALR-------------------------GESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             HHHHHHTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEECCSSHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHC-------------------------CCCeEeeccccccccee
Confidence            333444445 589999998874422                         25799999999999973

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=0.44  Score=39.29  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+.|.+|+|||.|+..|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.11  E-value=0.4  Score=39.84  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=18.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |-|.|.+|+|||.|++.+..
T Consensus         8 I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           8 VAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.02  E-value=0.43  Score=39.13  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=17.9

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.+-|++|+|||.|+..+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.77  E-value=0.46  Score=39.37  Aligned_cols=20  Identities=35%  Similarity=0.556  Sum_probs=18.0

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      +.|-|+.|+|||.|+..|.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999998865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.45  Score=40.13  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.5

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|..
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.11  E-value=0.49  Score=41.23  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=18.9

Q ss_pred             eEEEccCCCCHhHHHHHHHHhh
Q psy318           68 LYIYGAVGGGKTMLMDIFYESC   89 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~~l   89 (438)
                      |=|+|+.|||||++++.|.+..
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999996643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.06  E-value=0.5  Score=38.83  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=17.6

Q ss_pred             eEEEccCCCCHhHHHHHHHH
Q psy318           68 LYIYGAVGGGKTMLMDIFYE   87 (438)
Q Consensus        68 lyL~G~vG~GKT~Lmd~f~~   87 (438)
                      |.|-|++|+|||.|+..|-.
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998754