Psyllid ID: psy3195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MYSVIQQNAPNAQSGDESNTSADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDTTQ
Secondary Structure (PSIPRED)
ccHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEHHHccccccccccccccHHcccHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccHcccHHHHHcccccEEEEccHHHHHHcHHHcccEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
mysviqqnapnaqsgdesntsadqnsfidqayvesaslpvlpirlsigntaqvqgpltiveniDLRTRCANCNREAFAecsmcrqtpycstfcqrkdwtthqvecvrsdqIMLIVDTTQ
Flexible Loop (DISEMBL)
mysviqqnapnaqsgdesnTSADQNSFIDQAYVESASLPVLPIRLSigntaqvqgpLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVecvrsdqiMLIVDTTQ
Low Complexity Region (SEG)
MYSVIQQNAPNAQSGDESNTSADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDTTQ
Disordered region (IsUnstruct)
**************************FIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIV****
Disordered Region (DISOPRED)
****************************************************************LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS***********
Disordered Region (DISEMBL)
*********************ADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDTTQ
Disordered Region (DISPRO)
******Q****************************ASLPVLP**********V*GPLTIV***DLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYSVIQQNAPNAQSGDESNTSADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDTTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q24180	576	Deformed epidermal autore	yes	N/A	0.529	0.109	0.579	1e-17
O88450	565	Deformed epidermal autore	yes	N/A	0.403	0.084	0.520	6e-10
Q9Z1T5	566	Deformed epidermal autore	yes	N/A	0.403	0.084	0.520	6e-10
O75398	565	Deformed epidermal autore	yes	N/A	0.403	0.084	0.520	8e-10
O77562	565	Deformed epidermal autore	yes	N/A	0.403	0.084	0.520	2e-09
Q9BXT4	1180	Tudor domain-containing p	no	N/A	0.327	0.033	0.487	4e-06
O54972	620	Protein CBFA2T3 OS=Mus mu	no	N/A	0.453	0.087	0.418	2e-05
Q5BJI7	435	N-lysine methyltransferas	no	N/A	0.336	0.091	0.4	2e-05
Q99MV1	1172	Tudor domain-containing p	no	N/A	0.327	0.033	0.487	2e-05
O75081	653	Protein CBFA2T3 OS=Homo s	no	N/A	0.453	0.082	0.4	3e-05

>sp|Q24180|DEAF1_DROME Deformed epidermal autoregulatory factor 1 OS=Drosophila melanogaster GN=Deaf1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 6/69 (8%)

Query: 53  VQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVR----- 107
           + G L   E I  + +CANCNREA AECS+CR+TPYCS FCQRKDW  HQVEC R     
Sbjct: 506 ISGSLHGNEIISAK-KCANCNREALAECSLCRKTPYCSEFCQRKDWNAHQVECTRNPQTT 564

Query: 108 SDQIMLIVD 116
           + Q+ML++D
Sbjct: 565 TQQVMLLID 573

Transcription factor that binds the homeotic Deformed (Dfd) response element. High affinity binding sites contain at least 1 TTCG motif surrounded by additional TCG sequences. May be involved in the selective action of Dfd on these sites without binding directly to the Dfd protein. Requirement of DEAF1 activity may be a common feature of enhancers targeted by Dfd.
Drosophila melanogaster (taxid: 7227)

>sp|O88450|DEAF1_RAT Deformed epidermal autoregulatory factor 1 homolog OS=Rattus norvegicus GN=Deaf1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
           C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct: 504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQAD 551

Transcription factor that binds to sequence with multiple copies of 5'-TTC[CG]G-3' present in its own promoter and that of the HNRPA2B1 gene. Down-regulates transcription of these genes. Binds to the retinoic acid response element (RARE) 5'-AGGGTTCACCGAAAGTTCA-3'. Activates the proenkephalin gene independently of promoter binding, probably through protein-protein interaction. When secreted, behaves as an inhibitor of cell proliferation, by arresting cells in the G0 or G1 phase. Regulates epithelial cell proliferation and side-branching in the mammary gland. Required for neural tube closure and skeletal patterning. Controls the expression of peripheral tissue antigens in pancreatic lymph nodes.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1T5|DEAF1_MOUSE Deformed epidermal autoregulatory factor 1 homolog OS=Mus musculus GN=Deaf1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
           C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct: 505 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQAD 552

Transcription factor that binds to sequence with multiple copies of 5'-TTC[CG]G-3' present in its own promoter and that of the HNRPA2B1 gene. Down-regulates transcription of these genes. Binds to the retinoic acid response element (RARE) 5'-AGGGTTCACCGAAAGTTCA-3'. Activates the proenkephalin gene independently of promoter binding, probably through protein-protein interaction (By similarity). Regulates epithelial cell proliferation and side-branching in the mammary gland. Required for neural tube closure and skeletal patterning. Controls the expression of peripheral tissue antigens in pancreatic lymph nodes. Isoform 1 displays greater transcriptional activity than isoform 2. Isoform 2 may inhibit transcriptional activity of isoform 1 by interacting with it and retaining it in the cytoplasm.

Mus musculus (taxid: 10090)

>sp|O75398|DEAF1_HUMAN Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens GN=DEAF1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
           C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct: 504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQAD 551

Transcription factor that binds to sequence with multiple copies of 5'-TTC[CG]G-3' present in its own promoter and that of the HNRPA2B1 gene. Down-regulates transcription of these genes. Binds to the retinoic acid response element (RARE) 5'-AGGGTTCACCGAAAGTTCA-3'. Activates the proenkephalin gene independently of promoter binding, probably through protein-protein interaction. When secreted, behaves as an inhibitor of cell proliferation, by arresting cells in the G0 or G1 phase. Required for neural tube closure and skeletal patterning. Regulates epithelial cell proliferation and side-branching in the mammary gland. Controls the expression of peripheral tissue antigens in pancreatic lymph nodes. Isoform 1 displays greater transcriptional activity than isoform 4. Isoform 4 may inhibit transcriptional activity of isoform 1 by interacting with isoform 1 and retaining it in the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|O77562|DEAF1_PANTR Deformed epidermal autoregulatory factor 1 homolog OS=Pan troglodytes GN=DEAF1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 30/48 (62%)

Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
           C NC REA  EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct: 504 CVNCGREAMNECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQAD 551

Transcription factor that binds to sequence with multiple copies of 5'-TTC[CG]G-3' present in its own promoter and that of the HNRPA2B1 gene. Down-regulates transcription of these genes. Binds to the retinoic acid response element (RARE) 5'-AGGGTTCACCGAAAGTTCA-3'. Activates the proenkephalin gene independently of promoter binding, probably through protein-protein interaction. Regulates epithelial cell proliferation and side-branching in the mammary gland. Required for neural tube closure and skeletal patterning. Controls the expression of peripheral tissue antigens in pancreatic lymph nodes.

Pan troglodytes (taxid: 9598)

>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 67  TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           T C  C       CS C+QT YCST CQR+DW+ H + C
Sbjct: 168 TTCHRCGLFGSLRCSQCKQTYYCSTACQRRDWSAHSIVC 206

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Homo sapiens (taxid: 9606)

>sp|O54972|MTG16_MOUSE Protein CBFA2T3 OS=Mus musculus GN=Cbfa2t3 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 57  LTIV-ENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           LT++ +  D    C NC R+A   CS C    YC +FCQ KDW  H   C +S Q
Sbjct: 520 LTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHKDWEKHHHVCGQSLQ 574

Functions as a transcriptional repressor. Regulates the proliferation and the differentiation of erythroid progenitors by repressing the expression of TAL1 target genes. Plays a role in granulocyte differentiation. May also function as an A-kinase-anchoring protein.

Mus musculus (taxid: 10090)

>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 66  RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           R  C    +E  ++C  C+Q  YC+  CQR DW  H++EC
Sbjct: 51  RCECCFTRKEGLSKCGKCKQAYYCNVECQRGDWPMHKLEC 90

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 67  TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           T C  C       CS C+QT YCST CQR+DW++H   C
Sbjct: 161 TTCHRCGLFGSLRCSQCKQTYYCSTACQRRDWSSHSTIC 199

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Mus musculus (taxid: 10090)

>sp|O75081|MTG16_HUMAN Protein CBFA2T3 OS=Homo sapiens GN=CBFA2T3 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 57  LTIV-ENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           LT++ +  D    C NC R+A   CS C    YC +FCQ +DW  H   C +S Q
Sbjct: 543 LTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQSLQ 597

Isoform 2 functions as an A-kinase-anchoring protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
307195626	546	Deformed epidermal autoregulatory factor	0.571	0.124	0.571	4e-19
307184402	474	Deformed epidermal autoregulatory factor	0.571	0.143	0.558	6e-19
380022068	481	PREDICTED: deformed epidermal autoregula	0.571	0.141	0.571	6e-19
383854969	481	PREDICTED: deformed epidermal autoregula	0.571	0.141	0.571	7e-19
328786128	481	PREDICTED: deformed epidermal autoregula	0.571	0.141	0.571	7e-19
350420667	473	PREDICTED: deformed epidermal autoregula	0.571	0.143	0.571	7e-19
340724058	473	PREDICTED: deformed epidermal autoregula	0.571	0.143	0.571	8e-19
157135799	563	suppressin [Aedes aegypti] gi|108870106|	0.436	0.092	0.771	1e-18
347965134	579	AGAP004905-PA [Anopheles gambiae str. PE	0.487	0.100	0.714	1e-18
242023869	523	conserved hypothetical protein [Pediculu	0.428	0.097	0.763	9e-18

>gi|307195626|gb|EFN77468.1| Deformed epidermal autoregulatory factor 1 [Harpegnathos saltator]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW +HQV
Sbjct: 456 AQLGGRGDVIETVGLQPASDAHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWASHQV 515

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 516 ECVRGAAETVMLIVESS 532

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184402|gb|EFN70811.1| Deformed epidermal autoregulatory factor 1 [Camponotus floridanus]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 59/77 (76%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW +HQ+
Sbjct: 384 AQLGGRTDVIETVGLQPASDAHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWASHQM 443

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 444 ECVRGAAETVMLIVESS 460

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022068|ref|XP_003694877.1| PREDICTED: deformed epidermal autoregulatory factor 1-like [Apis florea]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW  HQV
Sbjct: 391 AQLGGRGDVIETVGLQPASDTHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWAGHQV 450

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 451 ECVRGAAETVMLIVESS 467

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854969|ref|XP_003702992.1| PREDICTED: deformed epidermal autoregulatory factor 1-like [Megachile rotundata]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW  HQV
Sbjct: 391 AQLGGRGDVIETVGLQPASDTHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWAGHQV 450

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 451 ECVRGAAETVMLIVESS 467

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786128|ref|XP_395757.3| PREDICTED: deformed epidermal autoregulatory factor 1 [Apis mellifera]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW  HQV
Sbjct: 391 AQLGGRGDVIETVGLQPASDTHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWAGHQV 450

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 451 ECVRGAAETVMLIVESS 467

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420667|ref|XP_003492584.1| PREDICTED: deformed epidermal autoregulatory factor 1-like [Bombus impatiens]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW  HQV
Sbjct: 383 AQLGGRGDVIETVGLQPASDTHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWAGHQV 442

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 443 ECVRGAAETVMLIVESS 459

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724058|ref|XP_003400402.1| PREDICTED: deformed epidermal autoregulatory factor 1-like [Bombus terrestris]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 9/77 (11%)

Query: 51  AQVQGPLTIVENIDLR-------TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQV 103
           AQ+ G   ++E + L+        +CANCNREAFAECS+CR+TPYCSTFCQRKDW  HQV
Sbjct: 383 AQLGGRGDVIETVGLQPASDTHNKKCANCNREAFAECSLCRRTPYCSTFCQRKDWAGHQV 442

Query: 104 ECVR--SDQIMLIVDTT 118
           ECVR  ++ +MLIV+++
Sbjct: 443 ECVRGAAETVMLIVESS 459

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135799|ref|XP_001663598.1| suppressin [Aedes aegypti] gi|108870106|gb|EAT34331.1| AAEL013408-PB [Aedes aegypti]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 47/57 (82%), Gaps = 5/57 (8%)

Query: 68  RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS-----DQIMLIVDTTQ 119
           +CANCNREA AECS+CR+TPYCSTFCQRKDW THQ ECVRS      QIMLIVD TQ
Sbjct: 507 KCANCNREALAECSLCRRTPYCSTFCQRKDWITHQNECVRSTQEATHQIMLIVDETQ 563

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965134|ref|XP_314996.4| AGAP004905-PA [Anopheles gambiae str. PEST] gi|333469282|gb|EAA10501.4| AGAP004905-PA [Anopheles gambiae str. PEST]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 49/63 (77%), Gaps = 5/63 (7%)

Query: 62  NIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS-----DQIMLIVD 116
           +I    +CANCNREA AECS+CR+TPYCSTFCQRKDW THQ ECVRS      QIMLIVD
Sbjct: 517 SIHANKKCANCNREALAECSLCRRTPYCSTFCQRKDWITHQNECVRSTQEPTHQIMLIVD 576

Query: 117 TTQ 119
            TQ
Sbjct: 577 ETQ 579

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023869|ref|XP_002432353.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517776|gb|EEB19615.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 49/55 (89%), Gaps = 4/55 (7%)

Query: 68  RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ---IMLIVDTTQ 119
           +CANCNR+AFAECS+CR+TPYCSTFCQRKDW  HQVECVR DQ   IMLIV++T+
Sbjct: 457 KCANCNRDAFAECSLCRRTPYCSTFCQRKDWGGHQVECVR-DQPGSIMLIVESTE 510

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0013799	576	Deaf1 "Deformed epidermal auto	0.529	0.109	0.579	8.1e-17
ZFIN|ZDB-GENE-081022-163	528	zgc:194895 "zgc:194895" [Danio	0.865	0.195	0.344	3.6e-11
RGD|620671	565	Deaf1 "DEAF1 transcription fac	0.403	0.084	0.520	4.3e-11
UNIPROTKB|O88450	565	Deaf1 "Deformed epidermal auto	0.403	0.084	0.520	4.3e-11
MGI|MGI:1858496	566	Deaf1 "deformed epidermal auto	0.403	0.084	0.520	4.4e-11
UNIPROTKB|E2QZJ4	565	DEAF1 "Uncharacterized protein	0.403	0.084	0.520	4.4e-11
UNIPROTKB|O75398	565	DEAF1 "Deformed epidermal auto	0.403	0.084	0.520	7.1e-11
UNIPROTKB|O77562	565	DEAF1 "Deformed epidermal auto	0.403	0.084	0.520	1.5e-10
UNIPROTKB|B6UV99	546	DEAF1 "DEAF1" [Gallus gallus (	0.739	0.161	0.367	4.6e-10
UNIPROTKB|F1RYX5	564	DEAF1 "Uncharacterized protein	0.336	0.070	0.6	1.7e-09

FB|FBgn0013799 Deaf1 "Deformed epidermal autoregulatory factor-1" [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 8.1e-17, P = 8.1e-17
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query:    53 VQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS---- 108
             + G L   E I  + +CANCNREA AECS+CR+TPYCS FCQRKDW  HQVEC R+    
Sbjct:   506 ISGSLHGNEIISAK-KCANCNREALAECSLCRKTPYCSEFCQRKDWNAHQVECTRNPQTT 564

Query:   109 -DQIMLIVD 116
               Q+ML++D
Sbjct:   565 TQQVMLLID 573

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0050776 "regulation of immune response" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

ZFIN|ZDB-GENE-081022-163 zgc:194895 "zgc:194895" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 40/116 (34%), Positives = 60/116 (51%)

Query:     4 VIQQNAPNAQSGDESNTSADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENI 63
             +I Q    +QSG  +  S D+NS   +   +S        + S+  T + +G +T    I
Sbjct:   418 LIAQAKQASQSGAHATISPDKNSSGRKESFQS--------QFSL--TEEPEGKIT---EI 464

Query:    64 DLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVDTTQ 119
              ++  C NC REA  EC+ C +  YCS FCQRKDW  HQ+ C + +  + I + TQ
Sbjct:   465 IIKHTCVNCGREASCECTGCHKVHYCSGFCQRKDWKEHQLNCCQPNTSVSIQEDTQ 520

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|620671 Deaf1 "DEAF1 transcription factor" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQAD 551

GO:0001843 "neural tube closure" evidence=IEA;ISO;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=IEA;ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048706 "embryonic skeletal system development" evidence=IEA;ISO;ISS

UNIPROTKB|O88450 Deaf1 "Deformed epidermal autoregulatory factor 1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQAD 551

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1858496 Deaf1 "deformed epidermal autoregulatory factor 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   505 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQAD 552

GO:0001843 "neural tube closure" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=ISO;IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IMP

UNIPROTKB|E2QZJ4 DEAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 151 (58.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   504 CVNCGREALSECTGCHKVNYCSTFCQRKDWKDHQHMCGQSAAVTVQAD 551

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O75398 DEAF1 "Deformed epidermal autoregulatory factor 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQAD 551

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0001843 "neural tube closure" evidence=ISS

GO:0048706 "embryonic skeletal system development" evidence=ISS

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0007281 "germ cell development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O77562 DEAF1 "Deformed epidermal autoregulatory factor 1 homolog" [Pan troglodytes (taxid:9598)]

 Score = 147 (56.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 25/48 (52%), Positives = 30/48 (62%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             C NC REA  EC+ C +  YCSTFCQRKDW  HQ  C +S  + +  D
Sbjct:   504 CVNCGREAMNECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQAD 551

GO:0001843 "neural tube closure" evidence=ISS

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=ISS

GO:0048706 "embryonic skeletal system development" evidence=ISS

UNIPROTKB|B6UV99 DEAF1 "DEAF1" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 36/98 (36%), Positives = 49/98 (50%)

Query:    19 NTSADQNSFIDQAYVESASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFA 78
             NT+    S I+QA   S+S      R +    A++Q  +   E       C NC REA  
Sbjct:   445 NTAQQLKSLIEQAKQASSSF-----REAAVTQAKIQADVERKEQ-----SCVNCGREAMN 494

Query:    79 ECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIMLIVD 116
             EC+ C +  YCSTFCQRKDW  HQ  C  ++ + +  D
Sbjct:   495 ECTGCHKVNYCSTFCQRKDWKEHQHICGEANAVTVQAD 532

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

UNIPROTKB|F1RYX5 DEAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query:    69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
             C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S
Sbjct:   503 CVNCGREALSECTGCHKVNYCSTFCQRKDWKDHQHMCGQS 542

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0033599 "regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z1T5	DEAF1_MOUSE	No assigned EC number	0.5208	0.4033	0.0848	yes	N/A
O75398	DEAF1_HUMAN	No assigned EC number	0.5208	0.4033	0.0849	yes	N/A
Q24180	DEAF1_DROME	No assigned EC number	0.5797	0.5294	0.1093	yes	N/A
O77562	DEAF1_PANTR	No assigned EC number	0.5208	0.4033	0.0849	yes	N/A
O88450	DEAF1_RAT	No assigned EC number	0.5208	0.4033	0.0849	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
pfam01753	39	pfam01753, zf-MYND, MYND finger	3e-11

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 54.0 bits (130), Expect = 3e-11
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 69  CANCNREAFA--ECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           CA C +EA     CS C+   YCS  CQ+ DW  H+ EC
Sbjct: 1   CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	99.32
KOG3612|consensus	588		98.9
KOG1710|consensus	396		98.58
PLN03158	396	methionine aminopeptidase; Provisional	96.54
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	95.8
KOG2084|consensus	482		94.85
KOG2857|consensus	157		93.8
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	93.58
KOG2061|consensus	362		92.8
KOG3362|consensus	156		86.27

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.32  E-value=5.7e-13  Score=76.01  Aligned_cols=37  Identities=49%  Similarity=1.163  Sum_probs=34.1

Q ss_pred             cccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195          69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC  105 (119)
Q Consensus        69 C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC  105 (119)
                      |.+|+++++.+|++|+.++|||++||++||+.|+.+|
T Consensus         1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKPALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSCSSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCCcCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            7889998888999999999999999999999999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG3612|consensus

Probab=98.90  E-value=9.5e-12  Score=105.67  Aligned_cols=107  Identities=21%  Similarity=0.453  Sum_probs=72.3

Q ss_pred             CchhccccCCCCCCCCccccccc-----cc-cccchhhhhhccCcccccCCCC-----------CceE------EecCCe
Q psy3195           1 MYSVIQQNAPNAQSGDESNTSAD-----QN-SFIDQAYVESASLPVLPIRLSI-----------GNTA------QVQGPL   57 (119)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-----q~-~~~~~~~~e~~~~~~a~~~~~~-----------G~~i------~~~~p~   57 (119)
                      ||++++++++|+..+.+..+.++     |+ +++...+..++..++.......           -+.+      +..+-.
T Consensus       439 i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~kkl~~~~q  518 (588)
T KOG3612|consen  439 IIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEIKKLAEEHQ  518 (588)
T ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999988     22 3333333333333332211111           1111      001111


Q ss_pred             eEeecCCcccccccccccccccCccCcccccCCHHHHHHhHHHHHHhccccc
Q psy3195          58 TIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSD  109 (119)
Q Consensus        58 ~~v~~~~~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~  109 (119)
                      ..+....+..+|++|.+++.+.|  |+.+.|||.+||+.||+.|+..|+.-.
T Consensus       519 r~l~etKkKQWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~~H~ksCrrk~  568 (588)
T KOG3612|consen  519 RALAETKKKQWCYNCLDEAIYHC--CWNTSYCSVECQQGHWPEHRKSCRRKK  568 (588)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHh--hccccccCcchhhccchhHhhhhcccC
Confidence            12222347789999999999999  999999999999999999999998654

>KOG1710|consensus

Probab=98.58  E-value=1.1e-08  Score=82.70  Aligned_cols=43  Identities=30%  Similarity=0.746  Sum_probs=39.3

Q ss_pred             cccccccccc-ccccCccCcccccCCHHHHHHhHHHHHHhcccc
Q psy3195          66 RTRCANCNRE-AFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS  108 (119)
Q Consensus        66 ~~~C~~C~k~-~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~  108 (119)
                      ..+|..||.+ +.++|+.|+.+.||+.+||+.||..||+.|+.+
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4678888876 799999999999999999999999999999865

>PLN03158 methionine aminopeptidase; Provisional

Probab=96.54  E-value=0.0017  Score=54.15  Aligned_cols=39  Identities=28%  Similarity=0.840  Sum_probs=33.4

Q ss_pred             ccccccccccccccCccCcc-------cccCCHHHHHHhHHHHHHh
Q psy3195          66 RTRCANCNREAFAECSMCRQ-------TPYCSTFCQRKDWTTHQVE  104 (119)
Q Consensus        66 ~~~C~~C~k~~l~~Cs~C~~-------~~YCs~~CQ~~dW~~Hk~e  104 (119)
                      ...|..|++++.+.|..|..       .++||.+|-+..|+.||..
T Consensus         9 ~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~   54 (396)
T PLN03158          9 PLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSV   54 (396)
T ss_pred             cccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHH
Confidence            34699999999899999864       7899999999999987653

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=95.80  E-value=0.0085  Score=37.17  Aligned_cols=43  Identities=28%  Similarity=0.540  Sum_probs=37.2

Q ss_pred             ccccccc----cccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          68 RCANCNR----EAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        68 ~C~~C~k----~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      .|..|.+    ...+.|+.|....|||++.-..|.+.|+..|..+.+
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRq   47 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQ   47 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHH
Confidence            3677776    568999999999999999998888899999988765

>KOG2084|consensus

Probab=94.85  E-value=0.017  Score=47.05  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             cCcccccCCCCCceEEecCCeeEeecCCcccccccccccccccCccCcccccCCHHHHHHhHHHHHHhccc
Q psy3195          37 SLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVR  107 (119)
Q Consensus        37 ~~~~a~~~~~~G~~i~~~~p~~~v~~~~~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~  107 (119)
                      .+.+++.+|.+|++|+.+.|+.+....   ..|..|.......|.+|+...||...++...|..|+..|..
T Consensus        26 r~~~a~~~i~~g~~i~~e~p~~~~p~~---~~~~~c~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (482)
T KOG2084|consen   26 RGLVATQAIEAGEVILEEEPLVVGPAS---KSCSRCLGCSCDHCRRCLEAIECNKCQQRGWALCGKFACSA   93 (482)
T ss_pred             cceeeecccCCCceEEecCcceeeecc---cCCccccccchhhhhcCCccHhhhhhhccCccccchhhcch
Confidence            378899999999999999999988776   55666666688899999999999998888888877777665

>KOG2857|consensus

Probab=93.80  E-value=0.025  Score=41.49  Aligned_cols=37  Identities=32%  Similarity=0.829  Sum_probs=30.8

Q ss_pred             ccccccccc-ccccCccCcccccCCHHHHHHhHHHHHH--hcccc
Q psy3195          67 TRCANCNRE-AFAECSMCRQTPYCSTFCQRKDWTTHQV--ECVRS  108 (119)
Q Consensus        67 ~~C~~C~k~-~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~--eC~~~  108 (119)
                      ..|.-|.+. ...+|+.|. +.|||..|    |+.||.  .|.+-
T Consensus         6 ~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fKiHk~tPq~~~v   45 (157)
T KOG2857|consen    6 TTCVICLESEIKYKCPKCS-VPYCSLPC----FKIHKSTPQCETV   45 (157)
T ss_pred             eeehhhhcchhhccCCCCC-Cccccchh----hhhccCCcccccc
Confidence            468889875 589999998 78999999    999998  66653

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.58  E-value=0.045  Score=29.78  Aligned_cols=28  Identities=32%  Similarity=0.810  Sum_probs=21.6

Q ss_pred             cccccccccccccCccCcccccCCHHHHH
Q psy3195          67 TRCANCNREAFAECSMCRQTPYCSTFCQR   95 (119)
Q Consensus        67 ~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~   95 (119)
                      ..|..|+.++..+|.+|. ..|||.+|-+
T Consensus         3 ~~C~vC~~~~kY~Cp~C~-~~~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGNPAKYRCPRCG-ARYCSLACYK   30 (30)
T ss_dssp             EEETSSSSEESEE-TTT---EESSHHHHH
T ss_pred             CCCccCcCCCEEECCCcC-CceeCcEeEC
Confidence            468999999999999998 4599999853

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>KOG2061|consensus

Probab=92.80  E-value=0.032  Score=46.28  Aligned_cols=48  Identities=33%  Similarity=0.718  Sum_probs=41.2

Q ss_pred             cccccccccccccCccCcccccCCHHHHHHhHHH-HHHhcccccceeEe
Q psy3195          67 TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTT-HQVECVRSDQIMLI  114 (119)
Q Consensus        67 ~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~-Hk~eC~~~~~~~~~  114 (119)
                      ..|..|+-.+...|..|+.+.|||+..|..||+. |+.+|......-.+
T Consensus       137 ~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~  185 (362)
T KOG2061|consen  137 DLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI  185 (362)
T ss_pred             chhccCcccCcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence            5688888779999999999999999999999997 99999987654333

>KOG3362|consensus

Probab=86.27  E-value=0.25  Score=36.39  Aligned_cols=32  Identities=38%  Similarity=0.812  Sum_probs=27.4

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHh
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKD   97 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~d   97 (119)
                      ....|+.||-+....|..|. +.||+..|...+
T Consensus       117 ~r~fCaVCG~~S~ysC~~CG-~kyCsv~C~~~H  148 (156)
T KOG3362|consen  117 LRKFCAVCGYDSKYSCVNCG-TKYCSVRCLKTH  148 (156)
T ss_pred             cchhhhhcCCCchhHHHhcC-Cceeechhhhhc
Confidence            45689999999999999998 779999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
2jw6_A	52	Solution Structure Of The Deaf1 Mynd Domain Length		3e-09
4a24_A	47	Structural And Functional Analysis Of The Deaf-1 An		4e-09
2od1_A	60	Solution Structure Of The Mynd Domain From Human Am		3e-06
2dj8_A	60	Solution Structure Of Zf-Mynd Domain Of Protein Cbf		5e-06
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		1e-05
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		2e-05
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		2e-05
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		2e-05
2odd_A	64	Solution Structure Of The Mynd Domain From Aml1-Eto		2e-05
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-04
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		1e-04
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		1e-04
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-04
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		1e-04
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		1e-04
2d8q_A	70	Solution Structure Of The Mynd Domain Of The Human		8e-04

>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain Length = 52

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 28/40 (70%)
Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
           C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S
Sbjct: 12  CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51

>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69 Mynd Domains Length = 47

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 65  LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
           +   C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S
Sbjct: 3   MEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 46

>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human Aml1-Eto Length = 60

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 56  PLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           P +   N D    C NC R+A   CS C    YC +FCQ KDW  H   C ++ Q
Sbjct: 3   PNSGSPNSDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 57

>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti (Protein Mtg8) Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 55  GPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           G   I +  D    C NC R+A   CS C    YC +FCQ KDW  H   C
Sbjct: 4   GSSGINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 54

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C    +E  ++C  C+Q  YC   CQ++DW  H++EC
Sbjct: 54  CCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E  ++C  C+Q  YC+  CQ++DW  H++EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E  ++C  C+Q  YC+  CQ++DW  H++EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E  ++C  C+Q  YC+  CQ++DW  H++EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90

>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto Complexed With Smrt, A Corepressor Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 64  DLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           D    C NC R+A   CS C    YC +FCQ KDW  H   C ++ Q
Sbjct: 15  DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 61

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 85  CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 123

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 51  CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 89

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 50  CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 49  CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 87

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 49  CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 87

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69  CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C  C   +E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 50  CDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKREC 88

>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc Finger Mynd Domain-Containing Protein 10 Length = 70

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 66  RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           R RCA C+ EA   CS C+   YC   CQ K W  H   CV + Q
Sbjct: 15  RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	3e-15
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	3e-14
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	5e-14
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	1e-13
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	2e-12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	1e-04

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 63.7 bits (155), Expect = 3e-15
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query: 60  VENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
           ++       C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C +S
Sbjct: 3   MDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 61.5 bits (149), Expect = 3e-14
 Identities = 20/49 (40%), Positives = 24/49 (48%)

Query: 62  NIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
             D    C NC R+A   CS C    YC +FCQ KDW  H   C ++ Q
Sbjct: 13  QGDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 61

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 60.7 bits (147), Expect = 5e-14
 Identities = 21/50 (42%), Positives = 25/50 (50%)

Query: 61  ENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
            N D    C NC R+A   CS C    YC +FCQ KDW  H   C ++ Q
Sbjct: 8   PNSDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 57

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 60.0 bits (145), Expect = 1e-13
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 68  RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
            C NC R+A   CS C    YC +FCQ KDW  H   C
Sbjct: 17  SCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 54

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 57.0 bits (137), Expect = 2e-12
 Identities = 20/45 (44%), Positives = 23/45 (51%)

Query: 66  RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
           R RCA C+ EA   CS C+   YC   CQ K W  H   CV + Q
Sbjct: 15  RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 57  LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIM 112
             +V +  +   C  C +  E    C  C+   YC   CQ+  W  H+ EC    +  
Sbjct: 40  SAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYG 97

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 57  LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
             ++   +    C  C    E  ++C  C+Q  YC   CQ++DW  H++EC
Sbjct: 40  ACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 57  LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
              V        C  C    E    CS CR   YCS  CQ+K W  H+ EC
Sbjct: 38  AYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.64
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.47
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	99.39
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	99.38
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	99.37
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	99.36
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	96.87
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	93.25

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.64  E-value=7.3e-17  Score=101.18  Aligned_cols=60  Identities=37%  Similarity=0.721  Sum_probs=43.0

Q ss_pred             cCCCCCceEEecCCeeEeecCCcccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          43 IRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        43 ~~~~~G~~i~~~~p~~~v~~~~~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      ++|.+|++|+.+.|        ....|..|+++++++|++|+.++|||++||+.||+.|+.+|..+.+
T Consensus         2 ~~~~~G~~il~~~~--------~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~~   61 (64)
T 2odd_A            2 NLYFQGENLYFQGD--------SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ   61 (64)
T ss_dssp             -------------C--------CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSCS
T ss_pred             CcCCCCCEEeeCCC--------CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHHHHhHHHhcccc
Confidence            57999999987777        3468999999999999999999999999999999999999997654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.49  E-value=7.2e-15  Score=120.55  Aligned_cols=77  Identities=21%  Similarity=0.436  Sum_probs=67.5

Q ss_pred             hhcc-CcccccCCCCCceEEecCCeeEeec-CCccccccccccc--ccccCccCcccccCCHHHHHHhHHHHHHhccccc
Q psy3195          34 ESAS-LPVLPIRLSIGNTAQVQGPLTIVEN-IDLRTRCANCNRE--AFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSD  109 (119)
Q Consensus        34 e~~~-~~~a~~~~~~G~~i~~~~p~~~v~~-~~~~~~C~~C~k~--~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~  109 (119)
                      ...+ +.+|+++|++|++|+.++|+..+.. ......|.+|++.  .+.+|++|+.++|||++||+.||+.||.+|..+.
T Consensus        15 ~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~   94 (433)
T 3qww_A           15 AGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMV   94 (433)
T ss_dssp             TTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHH
T ss_pred             CCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHH
Confidence            3444 8899999999999999999987664 4578899999985  7999999999999999999999999999998765


Q ss_pred             c
Q psy3195         110 Q  110 (119)
Q Consensus       110 ~  110 (119)
                      .
T Consensus        95 ~   95 (433)
T 3qww_A           95 V   95 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.48  E-value=1.4e-14  Score=118.23  Aligned_cols=76  Identities=28%  Similarity=0.478  Sum_probs=67.4

Q ss_pred             hcc-CcccccCCCCCceEEecCCeeEeecC-Ccccccccccc--cccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          35 SAS-LPVLPIRLSIGNTAQVQGPLTIVENI-DLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        35 ~~~-~~~a~~~~~~G~~i~~~~p~~~v~~~-~~~~~C~~C~k--~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      ..+ +.+|+++|++|++|+.+.|+..+... .....|.+|++  ..+.+|++|+.++|||++||+.||+.||.+|+.+..
T Consensus        14 ~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~   93 (429)
T 3qwp_A           14 NRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKS   93 (429)
T ss_dssp             SSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHh
Confidence            344 78999999999999999999987765 47889999997  479999999999999999999999999999987654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.47  E-value=2.2e-14  Score=119.28  Aligned_cols=82  Identities=17%  Similarity=0.402  Sum_probs=69.4

Q ss_pred             chhhhhhcc-CcccccCCCCCceEEecCCeeEee-cCCccccccccccc--ccccCccCcccccCCHHHHHHhHHHHHHh
Q psy3195          29 DQAYVESAS-LPVLPIRLSIGNTAQVQGPLTIVE-NIDLRTRCANCNRE--AFAECSMCRQTPYCSTFCQRKDWTTHQVE  104 (119)
Q Consensus        29 ~~~~~e~~~-~~~a~~~~~~G~~i~~~~p~~~v~-~~~~~~~C~~C~k~--~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~e  104 (119)
                      .+...+..+ +.+|+++|++|++|+.+.|+..+. .......|.+|++.  .+.+|++|+.++|||++||+.||+.|+.+
T Consensus        10 ~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~e   89 (490)
T 3n71_A           10 EVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNE   89 (490)
T ss_dssp             EEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHH
Confidence            334445555 889999999999999999998554 44578899999874  79999999999999999999999999999


Q ss_pred             cccccc
Q psy3195         105 CVRSDQ  110 (119)
Q Consensus       105 C~~~~~  110 (119)
                      |..+..
T Consensus        90 C~~~~~   95 (490)
T 3n71_A           90 CAAIKK   95 (490)
T ss_dssp             HHHHHH
T ss_pred             hHHHHh
Confidence            987654

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.39  E-value=1.8e-13  Score=84.79  Aligned_cols=46  Identities=39%  Similarity=0.915  Sum_probs=42.6

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      ....|..|+++++++|++|+.++||+++||+.||+.|+.+|..++.
T Consensus        14 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~~   59 (60)
T 2dj8_A           14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPSS   59 (60)
T ss_dssp             CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSSC
T ss_pred             CCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhccC
Confidence            4568999999999999999999999999999999999999998763

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=99.38  E-value=3.5e-13  Score=86.22  Aligned_cols=46  Identities=43%  Similarity=0.866  Sum_probs=42.8

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      ..+.|..|+++++++|++|+.++||+++||++||+.|+.+|.++..
T Consensus        14 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~   59 (70)
T 2d8q_A           14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ   59 (70)
T ss_dssp             CCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred             CCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999998765

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=99.37  E-value=2.4e-13  Score=84.29  Aligned_cols=46  Identities=41%  Similarity=0.910  Sum_probs=42.5

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ  110 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~  110 (119)
                      ....|..|+++++++|++|+.++||+++||+.||+.|+.+|..+..
T Consensus        12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~~   57 (60)
T 2od1_A           12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ   57 (60)
T ss_dssp             CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSSC
T ss_pred             CCCccccCCCcccccCCCCCCeeecCHHHHHHHHHHHhHHHccccc
Confidence            4568999999999999999999999999999999999999997654

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.36  E-value=1.5e-13  Score=82.38  Aligned_cols=44  Identities=55%  Similarity=1.155  Sum_probs=39.3

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS  108 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~  108 (119)
                      ....|..|+++++++|++|+.++|||++||..||+.|+.+|.+.
T Consensus         8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~~   51 (52)
T 2jw6_A            8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS   51 (52)
T ss_dssp             ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTTTCC
T ss_pred             cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHHHCHHHccC
Confidence            45689999999999999999999999999999999999999864

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.87  E-value=0.00074  Score=41.13  Aligned_cols=38  Identities=32%  Similarity=0.873  Sum_probs=32.8

Q ss_pred             cccccccccccccCccCcccccCCHHHHHHhHHHHHHhccccc
Q psy3195          67 TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSD  109 (119)
Q Consensus        67 ~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~  109 (119)
                      ..|..|+..+..+|.+|. +.|||..|    |+.|+..|....
T Consensus        13 ~~C~vC~~~~kY~CPrC~-~~yCSl~C----~k~Hk~~C~~~~   50 (56)
T 2yqq_A           13 VVCVICLEKPKYRCPACR-VPYCSVVC----FRKHKEQCNPET   50 (56)
T ss_dssp             CCCTTTCSCCSEECTTTC-CEESSHHH----HHHHHHHCCCCC
T ss_pred             CccCcCcCCCeeeCCCCC-CCeeCHHH----HHHHHhhCcCCc
Confidence            369999998899999998 78999999    888888887644

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=93.25  E-value=0.042  Score=33.62  Aligned_cols=34  Identities=41%  Similarity=0.921  Sum_probs=27.9

Q ss_pred             cccccccc----cccccCccCcccccCCHHHHHHhHHHHHHhcc
Q psy3195          67 TRCANCNR----EAFAECSMCRQTPYCSTFCQRKDWTTHQVECV  106 (119)
Q Consensus        67 ~~C~~C~k----~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~  106 (119)
                      ..|..|..    ++..+|.+|. +.|||..|.+    .|+ +|.
T Consensus        12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k----~Hk-~Cs   49 (59)
T 1x4s_A           12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYR----THG-TCA   49 (59)
T ss_dssp             EEECSSCTTCCEEECEECTTTC-CEESSHHHHH----HHC-CGG
T ss_pred             CcCcCCCCCcCCCccccCcCCC-CCccChHHHH----HHh-HhC
Confidence            47999984    5899999999 7899999965    576 565

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	5e-12
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	6e-12
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	1e-11

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 5e-12
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 66  RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           R RCA C+ EA   CS C+   YC   CQ K W  H   C
Sbjct: 8   RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 6e-12
 Identities = 23/37 (62%), Positives = 26/37 (70%)

Query: 69  CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
           C NC REA +EC+ C +  YCSTFCQRKDW  HQ  C
Sbjct: 2   CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 1e-11
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 68  RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
            C NC R+A   CS C    YC +FCQ KDW  H   C
Sbjct: 10  SCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.48
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.47
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.47
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	90.1

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.1e-15  Score=86.56  Aligned_cols=41  Identities=44%  Similarity=0.933  Sum_probs=38.2

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC  105 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC  105 (119)
                      ..++|.+|+++++++|++|+.++|||++||++||+.|+.+|
T Consensus         7 ~~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           7 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCCcCcCCCChhhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            34579999999999999999999999999999999999887

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.8e-15  Score=85.79  Aligned_cols=41  Identities=44%  Similarity=1.033  Sum_probs=38.6

Q ss_pred             cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195          65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC  105 (119)
Q Consensus        65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC  105 (119)
                      ....|..|+++++++|++|+.++|||++||+.||+.|+.+|
T Consensus         7 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           7 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             CCCcCCCCCccccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            45689999999999999999999999999999999999987

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.4e-15  Score=83.59  Aligned_cols=38  Identities=61%  Similarity=1.348  Sum_probs=36.2

Q ss_pred             ccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195          68 RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC  105 (119)
Q Consensus        68 ~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC  105 (119)
                      .|.+|+++++++|++|+.++|||++||+.||+.|+.+|
T Consensus         1 sC~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           1 SCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             CccccCccccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            38899999999999999999999999999999999987

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.081  Score=29.38  Aligned_cols=33  Identities=36%  Similarity=0.782  Sum_probs=25.6

Q ss_pred             ccccccc-cccccCccCcccccCCHHHHHHhHHHHHHhcc
Q psy3195          68 RCANCNR-EAFAECSMCRQTPYCSTFCQRKDWTTHQVECV  106 (119)
Q Consensus        68 ~C~~C~k-~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~  106 (119)
                      .|..|.. ++..+|.+|. +.|||..|-    +.|+ +|.
T Consensus         9 lC~vC~~~~~KY~CP~C~-~~yCSL~Cy----K~Hk-~Cs   42 (46)
T d1x4sa1           9 FCPAGEVQPARYTCPRCN-APYCSLRCY----RTHG-TCA   42 (46)
T ss_dssp             SSCTTCCEEECEECTTTC-CEESSHHHH----HHHC-CGG
T ss_pred             cChhhhCccccccCCCCC-CceechHHH----hhhh-hcc
Confidence            5888876 5799999995 789999995    4565 354