Psyllid ID: psy3204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEccccEEEEEEccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHEEcccccccccEEEcccccHHHHHHHHHHHHHHcHHHEEEEEEEccccccEcEccccccHHHHHEHcccHHHHHHHHHHHHccccHHcccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEccEEcccccEEEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcc
Coil and Loop (DISEMBL)
msvnqsggegmqqidltklafpqltqlknQLDSVSFQALALSAMSVnqsggegmqqidltklafpqltqlKNQLDSVSFQALGLCFkwqgshlrelfhpttdfsylKLLESSNNFILKQFkegehctsagsefhnctaftkrelpsavplcggtlrrqpnngalKRAQVKFqdskesldkitpssqgnpimvpltdsmyvegkiadadKVVIDIGtgfyveksipdaQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Flexible Loop (DISEMBL)
msvnqsggegmqqiDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCggtlrrqpnngaLKRAQVkfqdskesldkitpssqgnpimVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Low Complexity Region (SEG)
MSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKlqfifllyilifcsliifNS
Disordered region (IsUnstruct)
***************LTKLAFPQLTQLKNQLDSVSFQALALS*************QIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGT***********************************IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIF**
Disordered Region (DISOPRED)
************QIDLTKLAFPQLTQLKNQLDSVSFQAL****************************************QALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNF*********************************************NGALKRAQVKFQDSKESLDK********PIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ*MEK***IFLLYILIFCSLIIFN*
Disordered Region (DISEMBL)
**********MQQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Disordered Region (DISPRO)
**********MQQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQ**GEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLIIFNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9WU28	154	Prefoldin subunit 5 OS=Mu	yes	N/A	0.310	0.532	0.506	2e-20
Q99471	154	Prefoldin subunit 5 OS=Ho	yes	N/A	0.310	0.532	0.506	2e-20
Q5RAY0	154	Prefoldin subunit 5 OS=Po	yes	N/A	0.310	0.532	0.506	2e-20
Q8HYI9	154	Prefoldin subunit 5 OS=Bo	yes	N/A	0.310	0.532	0.493	6e-20
Q9VCZ8	168	Probable prefoldin subuni	yes	N/A	0.352	0.553	0.451	8e-19
O94307	154	Probable prefoldin subuni	yes	N/A	0.318	0.545	0.406	7e-13
Q54V55	160	Probable prefoldin subuni	yes	N/A	0.310	0.512	0.409	2e-12
P57742	151	Probable prefoldin subuni	yes	N/A	0.310	0.543	0.353	9e-12
Q21993	152	Probable prefoldin subuni	yes	N/A	0.405	0.703	0.270	2e-08
Q04493	163	Prefoldin subunit 5 OS=Sa	yes	N/A	0.318	0.515	0.373	6e-08

>sp|Q9WU28|PFD5_MOUSE Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 65/83 (78%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36  LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
             DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96  AEDAKDFFKRKIDFLTKQMEKIQ 118

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.
Mus musculus (taxid: 10090)

>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 65/83 (78%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36  LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
             DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96  AEDAKDFFKRKIDFLTKQMEKIQ 118

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Homo sapiens (taxid: 9606)

>sp|Q5RAY0|PFD5_PONAB Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 65/83 (78%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36  LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
             DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96  AEDAKDFFKRKIDFLTKQMEKIQ 118

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Pongo abelii (taxid: 9601)

>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 65/83 (78%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK  Q K+ ++K+ L+ +  +++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36  LKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
             DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96  AEDAKDFFKRKIDFLTKQMEKIQ 118

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Bos taurus (taxid: 9913)

>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 64/93 (68%)

Query: 168 QVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDA 227
           Q K+  SKE+L    P+ +   I+VPLT SMYV G++ D ++ VIDIGTG+Y+EK +  +
Sbjct: 49  QAKYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYYIEKDLEGS 108

Query: 228 QDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLI 260
           +DYFKRRV +V +Q+EK++ I L     + S++
Sbjct: 109 KDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVM 141

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|O94307|PFD5_SCHPO Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bob1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 162 GALKRAQVKFQDSKESL-DKITPSSQGNPIMVPLTDSMYVEGKIADAD-KVVIDIGTGFY 219
           G L RAQ+KF++   ++ D +   + G  ++VPLT S+YV GK+   + K+++DIGTG+Y
Sbjct: 37  GQLGRAQLKFRECLANVNDAVRAENDGKEVLVPLTSSLYVPGKLNLGNSKLLVDIGTGYY 96

Query: 220 VEKSIPDAQDYFKRRVAFVTQQMEKL 245
           VEKS  +A +Y+KR+  ++   +E L
Sbjct: 97  VEKSAGEATEYYKRKCEYLASSIENL 122

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). Required for normal cytoskeletal function and when bound to byr1, is involved in the regulation of sexual differentiation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54V55|PFD5_DICDI Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK A  K+ ++KE++  +   + G  ++VPLT S+Y+ GKI   +KV++DIGTG+YVE  
Sbjct: 40  LKHASNKYIEAKEAMGGL-KGTDGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMG 98

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
           I   Q++  R+V  +T+Q+ K+Q
Sbjct: 99  IEQGQNFSNRKVQLITEQVNKVQ 121

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|P57742|PFD5_ARATH Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 56/82 (68%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           ++ A V+   +  +L+ ++   QG  ++VPLT S+YV G + +ADKV++DIGTG+++EK+
Sbjct: 39  IRTATVRLDAAAAALNDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKT 98

Query: 224 IPDAQDYFKRRVAFVTQQMEKL 245
           + D +DY +R++  +    ++L
Sbjct: 99  MDDGKDYCQRKINLLKSNFDQL 120

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=pfd-5 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 143 ELPSAVPLCGGTLRR---------------QPNNGALKRAQVKFQDSKESLDKITPSSQG 187
           E P  VPL   +L++               Q +  ALK    + + S  +LD +  ++ G
Sbjct: 3   EEPKGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAG 62

Query: 188 NPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQF 247
           +  ++PL++S+Y+  +++D  K +++IGTG++VE     A+  F R+   +T+Q+E ++ 
Sbjct: 63  HTALIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVETVEG 122

Query: 248 IF 249
           I 
Sbjct: 123 IL 124

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q04493|PFD5_YEAST Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM5 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 7/91 (7%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQ----GNPIMVPLTDSMYVEGKIADADKVVIDIGTGF 218
           AL  A+ KF    E +D I   SQ    G  ++VP + S+Y+ GKI D  K ++DIGTG+
Sbjct: 36  ALTMAKGKF---TECIDDIKTVSQAGNEGQKLLVPASASLYIPGKIVDNKKFMVDIGTGY 92

Query: 219 YVEKSIPDAQDYFKRRVAFVTQQMEKLQFIF 249
           YVEKS   A  +++++V  + ++  ++Q I 
Sbjct: 93  YVEKSAEAAIAFYQKKVDKLNKESVQIQDII 123

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
156537009	158	PREDICTED: prefoldin subunit 5-like [Nas	0.325	0.544	0.662	2e-26
389609117	161	prefoldin subunit [Papilio xuthus]	0.325	0.534	0.639	8e-25
383851510	158	PREDICTED: prefoldin subunit 5-like [Meg	0.318	0.531	0.630	4e-24
340718343	157	PREDICTED: prefoldin subunit 5-like [Bom	0.318	0.535	0.630	4e-24
350401670	157	PREDICTED: prefoldin subunit 5-like [Bom	0.318	0.535	0.630	4e-24
307197577	161	Prefoldin subunit 5 [Harpegnathos saltat	0.314	0.515	0.638	4e-24
322798034	163	hypothetical protein SINV_11749 [Solenop	0.318	0.515	0.619	5e-24
241732389	158	prefoldin, putative [Ixodes scapularis]	0.321	0.537	0.611	5e-24
346471365	162	hypothetical protein [Amblyomma maculatu	0.321	0.524	0.588	1e-23
332018870	163	Prefoldin subunit 5 [Acromyrmex echinati	0.318	0.515	0.607	3e-23

>gi|156537009|ref|XP_001608297.1| PREDICTED: prefoldin subunit 5-like [Nasonia vitripennis]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           +LK AQ KFQ+S E LDK TP+++G  I+VPLT SMYV GK+ D +KV+IDIGTG+Y EK
Sbjct: 45  SLKIAQSKFQESNECLDKFTPNAKGKEILVPLTGSMYVPGKLVDTEKVLIDIGTGYYAEK 104

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQFI 248
           +IPDA++YFKRRV FVT+QMEK+Q I
Sbjct: 105 NIPDAKEYFKRRVVFVTEQMEKIQAI 130

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609117|dbj|BAM18170.1| prefoldin subunit [Papilio xuthus]

 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 71/86 (82%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           ALK AQ KF DS E+++K+TPS++G  I+VPLT SMYV G IAD + V+IDIGTG+YV+K
Sbjct: 45  ALKIAQGKFVDSGETVEKLTPSTKGKTILVPLTSSMYVSGTIADTENVIIDIGTGYYVQK 104

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQFI 248
            I  A+DYFKR+VAFVT+QMEK+Q +
Sbjct: 105 DIDGAKDYFKRKVAFVTEQMEKIQVL 130

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851510|ref|XP_003701275.1| PREDICTED: prefoldin subunit 5-like [Megachile rotundata]

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 69/84 (82%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
            LK AQ KFQ+S   L+KITP+ +GN I+VPLT SMYV GK+AD + V+IDIGTG+Y +K
Sbjct: 45  TLKIAQTKFQESGSCLEKITPAMEGNEILVPLTGSMYVVGKLADTNNVLIDIGTGYYAQK 104

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
           ++ DA+DYF RRVA+VT+QMEK+Q
Sbjct: 105 NVTDAKDYFDRRVAYVTEQMEKIQ 128

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718343|ref|XP_003397628.1| PREDICTED: prefoldin subunit 5-like [Bombus terrestris]

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 68/84 (80%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
            LK AQ KFQ+S   L+KI+PS +GN I+VPLT SMYV GK+ D + V+IDIGTG+Y +K
Sbjct: 45  TLKIAQSKFQESGSCLEKISPSMEGNEILVPLTGSMYVVGKLVDTNNVLIDIGTGYYAQK 104

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
            +PDA+DYF RRVA+VT+QMEK+Q
Sbjct: 105 KVPDAKDYFDRRVAYVTEQMEKIQ 128

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401670|ref|XP_003486223.1| PREDICTED: prefoldin subunit 5-like [Bombus impatiens]

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 68/84 (80%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
            LK AQ KFQ+S   L+KI+PS +GN I+VPLT SMYV GK+ D + V+IDIGTG+Y +K
Sbjct: 45  TLKIAQSKFQESGSCLEKISPSMEGNEILVPLTGSMYVVGKLVDTNNVLIDIGTGYYAQK 104

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
            +PDA+DYF RRVA+VT+QMEK+Q
Sbjct: 105 KVPDAKDYFDRRVAYVTEQMEKIQ 128

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197577|gb|EFN78788.1| Prefoldin subunit 5 [Harpegnathos saltator]

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK AQ +FQ+S   L+KI P  +GN I+VPLT SMYV GK+ADA+ V++DIGTG+Y EK 
Sbjct: 46  LKIAQSRFQESGACLEKIIPGVEGNEILVPLTSSMYVTGKLADANNVLVDIGTGYYAEKG 105

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
           I DA+DYFKRRV +VT+QMEK+Q
Sbjct: 106 IEDAKDYFKRRVEYVTEQMEKIQ 128

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798034|gb|EFZ19878.1| hypothetical protein SINV_11749 [Solenopsis invicta]

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 69/84 (82%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
            LK AQ +FQ+S   L+KITP S+GN I+VPLT SMYV GK+ D++ V++DIGTG+Y EK
Sbjct: 48  TLKIAQSRFQESGSCLEKITPDSEGNEILVPLTGSMYVTGKLIDSNNVIVDIGTGYYAEK 107

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
           +I DA+DYFKR+V +VT+QMEK+Q
Sbjct: 108 NIVDAKDYFKRKVEYVTEQMEKIQ 131

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241732389|ref|XP_002413855.1| prefoldin, putative [Ixodes scapularis] gi|215507677|gb|EEC17163.1| prefoldin, putative [Ixodes scapularis] gi|442751333|gb|JAA67826.1| Putative molecular chaperone prefoldin subunit 5 [Ixodes ricinus]

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 69/85 (81%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK  Q KFQ+S+ SL+K+ PS++G  I+VPLT SMYV GK+AD +KV +DIGTG+YVEK 
Sbjct: 40  LKGVQAKFQESESSLEKLRPSNEGKEILVPLTSSMYVPGKLADVNKVTVDIGTGYYVEKD 99

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQFI 248
           I  ++DYFKRRV +VT+QMEK+Q +
Sbjct: 100 ISASKDYFKRRVKYVTEQMEKIQKV 124

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471365|gb|AEO35527.1| hypothetical protein [Amblyomma maculatum]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 68/85 (80%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           LK AQ +FQ+S+ SLD + PSS+G  I+VPLT SMYV G++ D +K+ +DIGTG+YVEK 
Sbjct: 40  LKTAQTRFQESENSLDMLKPSSEGKDILVPLTSSMYVPGRLVDVNKITVDIGTGYYVEKD 99

Query: 224 IPDAQDYFKRRVAFVTQQMEKLQFI 248
           I  ++DYFKRRV ++TQQMEK+Q +
Sbjct: 100 ISGSKDYFKRRVKYITQQMEKIQKV 124

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018870|gb|EGI59419.1| Prefoldin subunit 5 [Acromyrmex echinatior]

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 68/84 (80%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
            LK AQ +FQ+S   L+KIT  ++G+ I+VPLT SMYV GK+ADA+ V++DIGTG+Y EK
Sbjct: 48  TLKIAQSRFQESGSCLEKITSDTEGSEILVPLTGSMYVTGKLADANNVIVDIGTGYYAEK 107

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
            I DA+DYFKR+V +VT+QMEK+Q
Sbjct: 108 RIEDAKDYFKRKVEYVTEQMEKIQ 131

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
UNIPROTKB|Q99471	154	PFDN5 "Prefoldin subunit 5" [H	0.306	0.525	0.506	5.1e-26
MGI|MGI:1928753	154	Pfdn5 "prefoldin 5" [Mus muscu	0.306	0.525	0.506	5.1e-26
RGD|1311436	154	Pfdn5 "prefoldin subunit 5" [R	0.306	0.525	0.506	5.1e-26
UNIPROTKB|F1SFR2	160	PFDN5 "Uncharacterized protein	0.306	0.506	0.506	6.4e-26
UNIPROTKB|Q8HYI9	154	PFDN5 "Prefoldin subunit 5" [B	0.306	0.525	0.493	1.7e-25
UNIPROTKB|E2RC92	154	PFDN5 "Uncharacterized protein	0.306	0.525	0.493	2.1e-25
ZFIN|ZDB-GENE-030131-6858	153	pfdn5 "prefoldin 5" [Danio rer	0.306	0.529	0.469	2.4e-24
FB|FBgn0038976	168	CG7048 [Drosophila melanogaste	0.329	0.517	0.471	3.7e-22
UNIPROTKB|H3BPF6	152	PFDN5 "Prefoldin subunit 5" [H	0.306	0.532	0.445	4.5e-20
UNIPROTKB|E2RC90	109	PFDN5 "Uncharacterized protein	0.185	0.449	0.591	3.4e-18

UNIPROTKB|Q99471 PFDN5 "Prefoldin subunit 5" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 41/81 (50%), Positives = 63/81 (77%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:    96 AEDAKDFFKRKIDFLTKQMEK 116

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP

MGI|MGI:1928753 Pfdn5 "prefoldin 5" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 41/81 (50%), Positives = 63/81 (77%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:    96 AEDAKDFFKRKIDFLTKQMEK 116

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1311436 Pfdn5 "prefoldin subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 41/81 (50%), Positives = 63/81 (77%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:    96 AEDAKDFFKRKIDFLTKQMEK 116

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA;ISO

UNIPROTKB|F1SFR2 PFDN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 41/81 (50%), Positives = 63/81 (77%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L+ +  S++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    42 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 101

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:   102 AEDAKDFFKRKIDFLTKQMEK 122

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q8HYI9 PFDN5 "Prefoldin subunit 5" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 40/81 (49%), Positives = 63/81 (77%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L+ +  +++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    36 LKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:    96 AEDAKDFFKRKIDFLTKQMEK 116

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|E2RC92 PFDN5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 40/81 (49%), Positives = 62/81 (76%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+ L  +  +++G  ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct:    36 LKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
               DA+D+FKR++ F+T+QMEK
Sbjct:    96 AEDAKDFFKRKIDFLTKQMEK 116

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-030131-6858 pfdn5 "prefoldin 5" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 38/81 (46%), Positives = 64/81 (79%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
             LK  Q K+ ++K+SL+ +  S++G  ++VPLT SMYV GK+ D D V++D+GTG++VEK+
Sbjct:    34 LKVVQTKYVEAKDSLNVLNKSNEGKELLVPLTSSMYVPGKLHDVDHVLVDVGTGYFVEKN 93

Query:   224 IPDAQDYFKRRVAFVTQQMEK 244
             + D +++FKR++ F+T+Q+EK
Sbjct:    94 VEDGKEFFKRKIGFLTKQIEK 114

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

FB|FBgn0038976 CG7048 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 41/87 (47%), Positives = 59/87 (67%)

Query:   158 QPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTG 217
             Q +   L   Q K+  SKE+L    P+ +   I+VPLT SMYV G++ D ++ VIDIGTG
Sbjct:    39 QDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTG 98

Query:   218 FYVEKSIPDAQDYFKRRVAFVTQQMEK 244
             +Y+EK +  ++DYFKRRV +V +Q+EK
Sbjct:    99 YYIEKDLEGSKDYFKRRVEYVQEQIEK 125

GO:0006457 "protein folding" evidence=ISS

GO:0016272 "prefoldin complex" evidence=ISS;IDA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|H3BPF6 PFDN5 "Prefoldin subunit 5" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 37/83 (44%), Positives = 59/83 (71%)

Query:   164 LKRAQVKFQDSKESLDKITPSSQ-GNPIMVP-LTDSMYVEGKIADADKVVIDIGTGFYVE 221
             LK  Q K+ ++K+ L+ +  S++ G  +  P  +  MYV GK+ D + V+ID+GTG+YVE
Sbjct:    32 LKVVQTKYVEAKDCLNVLNKSNEDGISLCRPGWSAMMYVPGKLHDVEHVLIDVGTGYYVE 91

Query:   222 KSIPDAQDYFKRRVAFVTQQMEK 244
             K+  DA+D+FKR++ F+T+QMEK
Sbjct:    92 KTAEDAKDFFKRKIDFLTKQMEK 114

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E2RC90 PFDN5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 29/49 (59%), Positives = 41/49 (83%)

Query:   196 DSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEK 244
             D MYV GK+ D + V+ID+GTG+YVEK+  DA+D+FKR++ F+T+QMEK
Sbjct:    23 DQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEK 71

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99471	PFD5_HUMAN	No assigned EC number	0.5060	0.3106	0.5324	yes	N/A
Q9WU28	PFD5_MOUSE	No assigned EC number	0.5060	0.3106	0.5324	yes	N/A
Q5RAY0	PFD5_PONAB	No assigned EC number	0.5060	0.3106	0.5324	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	4e-21
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	4e-19
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	7e-18
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	2e-17
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	4e-12
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	4e-10
PRK14011	144	PRK14011, PRK14011, prefoldin subunit alpha; Provi	0.003

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 85.7 bits (213), Expect = 4e-21
 Identities = 30/85 (35%), Positives = 58/85 (68%)

Query: 162 GALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
             L  A  +++ +KE+L+ +  + +G   +VPL   ++V+ K+ D DKV++D+GTG+YVE
Sbjct: 23  ARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           K + +A ++  +++  +T+Q+EKLQ
Sbjct: 83  KDLEEAIEFLDKKIEELTKQIEKLQ 107

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 80.0 bits (198), Expect = 4e-19
 Identities = 29/85 (34%), Positives = 57/85 (67%)

Query: 162 GALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
             L+ A  + + + E+L  +    +G  ++VPL   ++V+G++ D DKV++D+G G+YVE
Sbjct: 13  ARLREAIEELEKTLETLKTLKKEDEGKEVLVPLGAGLFVKGEVIDTDKVLVDLGAGYYVE 72

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           KS+ +A ++ K+R+  + +Q+EKL+
Sbjct: 73  KSLEEAIEFLKKRIEELEKQLEKLE 97

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 76.9 bits (190), Expect = 7e-18
 Identities = 27/85 (31%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 162 GALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
            AL+    + + + E+L+ +   ++G   +VP+    +V+ K+ D DKV++ IG+G+YVE
Sbjct: 23  AALRALIAELETAIETLEDLK-GAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           K   +A ++ K+R+  + + +EKLQ
Sbjct: 82  KDAEEAIEFLKKRIEELEKAIEKLQ 106

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 28/85 (32%), Positives = 58/85 (68%)

Query: 162 GALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
             L+    +++ +KE+L+ +  + +   ++VPL   ++V+ ++ D DKV++D+GTG YVE
Sbjct: 23  QKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           KS+ +A ++ K+R+  + +Q+EKL+
Sbjct: 83  KSLEEAIEFLKKRLETLEKQIEKLE 107

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 29/85 (34%), Positives = 55/85 (64%)

Query: 162 GALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
            AL  A  + Q + E+L+ +  + +G  ++VP+   ++V+ K+ D DKV++ IG+G+Y E
Sbjct: 30  AALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAE 89

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           KS  +A ++ K+R+  + + +EKLQ
Sbjct: 90  KSADEAIEFLKKRIEELEKAIEKLQ 114

Length = 145

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 171 FQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDY 230
              +KE+L+++    +G   +VP+    +V+ K+ D DKV++ +G G+  EK + +A + 
Sbjct: 39  LDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEI 98

Query: 231 FKRR 234
             +R
Sbjct: 99  LDKR 102

Length = 140

>gnl|CDD|237582 PRK14011, PRK14011, prefoldin subunit alpha; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 190 IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
           I++PL    +++ KI D DK ++ +G+  Y+EK + +  + FK+ V
Sbjct: 52  ILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSV 97

Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG3048|consensus	153		100.0
PRK14011	144	prefoldin subunit alpha; Provisional	99.94
PRK01203	130	prefoldin subunit alpha; Provisional	99.93
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.92
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.91
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.91
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.9
PRK03947	140	prefoldin subunit alpha; Reviewed	99.89
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.87
KOG3130|consensus	514		99.09
KOG3047|consensus	157		98.87
KOG3313|consensus	187		97.9
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	96.84
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	96.43
PF13758	99	Prefoldin_3: Prefoldin subunit	96.43
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	96.4
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	96.28
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	96.1
PRK03947	140	prefoldin subunit alpha; Reviewed	95.17
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	94.96
PRK01203	130	prefoldin subunit alpha; Provisional	91.71
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	87.24
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	86.72

>KOG3048|consensus

Probab=100.00  E-value=2.1e-38  Score=268.88  Aligned_cols=124  Identities=46%  Similarity=0.771  Sum_probs=120.4

Q ss_pred             CCccceecCCCChHHHHHHHHhhhhhhhhhhcchhhccccccccccCCCchhhhhHhhhhchhHHHhhhhcccccccCCc
Q psy3204          52 EGMQQIDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGS  131 (264)
Q Consensus        52 ~~~~~i~l~~l~~~ql~~~k~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~  131 (264)
                      ++.+.||||+|++|||.+||+|+|+    ||+                        +|++|                   
T Consensus         3 ~~s~~idltkLsleQL~~lk~q~dq----El~------------------------~lq~S-------------------   35 (153)
T KOG3048|consen    3 EESKGIDLTKLSLEQLGALKKQFDQ----ELN------------------------FLQDS-------------------   35 (153)
T ss_pred             CcccCCChhhCCHHHHHHHHHHHHH----HHH------------------------HHHHH-------------------
Confidence            4668899999999999999999999    999                        99999                   


Q ss_pred             cccccccccccCCCCCCCCCCCcccCccchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEE
Q psy3204         132 EFHNCTAFTKRELPSAVPLCGGTLRRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVV  211 (264)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~t~~lqqQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVL  211 (264)
                                                   +++|+.++.||.+|+++|+.++..++|+++|||||+|+||||++.|++++|
T Consensus        36 -----------------------------l~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~l   86 (153)
T KOG3048|consen   36 -----------------------------LNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSDNSKFL   86 (153)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceecccccee
Confidence                                         999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         212 IDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLL  251 (264)
Q Consensus       212 VDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~  251 (264)
                      ||||||||||||.++|++||+||+++|++++++|++++..
T Consensus        87 VDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~e  126 (153)
T KOG3048|consen   87 VDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKE  126 (153)
T ss_pred             EeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.94  E-value=2.3e-26  Score=193.68  Aligned_cols=93  Identities=19%  Similarity=0.369  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +++|+.++++|.+|+++|+.++   .+++||||||+|+||||+|.|+++||||||||||||||.++|++||+||+++|++
T Consensus        26 i~~L~~a~~e~~~~ie~L~~l~---~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~  102 (144)
T PRK14011         26 LSSIDMMKMELLKSIESMEGLK---TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDK  102 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC---CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875   4799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYILIF  256 (264)
Q Consensus       241 qieKLqkiIq~~l~~~  256 (264)
                      ++++|.+.|+..-.+.
T Consensus       103 ~~~~l~~~i~~~~~~~  118 (144)
T PRK14011        103 TKKEGNKKIEELNKEI  118 (144)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888765443

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.93  E-value=2.1e-25  Score=186.11  Aligned_cols=104  Identities=13%  Similarity=0.287  Sum_probs=98.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHH
Q psy3204         157 RQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVA  236 (264)
Q Consensus       157 lqqQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk  236 (264)
                      +++++++|+.++++|.+|+++|+.++ ...+++||||||+|+||||+|.|+++|||||||||||||+.++|+++++++++
T Consensus        19 l~~ql~~L~~a~se~~~~ie~L~~~~-~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie   97 (130)
T PRK01203         19 VDSQIDSLNKTLSEVQQTISFLSDNE-LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERERTIERLKENLE   97 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHH
Confidence            78899999999999999999999976 45679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy3204         237 FVTQQMEKLQFIFLLYILIFCSLII  261 (264)
Q Consensus       237 ~LeeqieKLqkiIq~~l~~~~~~~~  261 (264)
                      .|++.+.+.+..++.+-..|-.|-|
T Consensus        98 ~Le~~i~~K~~~l~~i~~~~~~l~~  122 (130)
T PRK01203         98 DLKDSIQKLNDQRKTLVDQYNTVYI  122 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887754

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.92  E-value=4e-24  Score=170.99  Aligned_cols=96  Identities=28%  Similarity=0.512  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +..|+.++.+|..++++|+.+++. .+.++|||||+++||||+|.++++|+|+||+|||||++.++|++|+++|++.+++
T Consensus        22 i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~  100 (126)
T TIGR00293        22 IAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEK  100 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999865 7899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy3204         241 QMEKLQFIFLLYILIFC  257 (264)
Q Consensus       241 qieKLqkiIq~~l~~~~  257 (264)
                      +++++++.+...-..+-
T Consensus       101 ~~~~l~~~l~~l~~~~~  117 (126)
T TIGR00293       101 AIEKLQEALAELASRAQ  117 (126)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999887655543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.3e-23  Score=175.38  Aligned_cols=96  Identities=30%  Similarity=0.567  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +..|+.++++++.|+++|+.++...+|+|+|||+|+++||+|++.|.++|||+||+|||||++.++|++|+++|++.|++
T Consensus        29 i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~  108 (145)
T COG1730          29 IAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEK  108 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986655899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYILIF  256 (264)
Q Consensus       241 qieKLqkiIq~~l~~~  256 (264)
                      .++++++.|...-..+
T Consensus       109 ~~~~l~~~l~~l~~~~  124 (145)
T COG1730         109 AIEKLQQALAELAQRI  124 (145)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998887654443

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.91  E-value=5.4e-23  Score=165.08  Aligned_cols=94  Identities=32%  Similarity=0.617  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      ++.|+..+.+|..++++|+.+++...+.++|||||+++||||+|.++++|+|+||+|||||++.++|++|+++|++.|++
T Consensus        22 ~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~  101 (129)
T cd00584          22 LARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTK  101 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYIL  254 (264)
Q Consensus       241 qieKLqkiIq~~l~  254 (264)
                      .++++++.+..-=.
T Consensus       102 ~~~~l~~~l~~l~~  115 (129)
T cd00584         102 QIEKLQKELAKLKD  115 (129)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988765433

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.90  E-value=6.5e-23  Score=161.15  Aligned_cols=101  Identities=30%  Similarity=0.561  Sum_probs=90.3

Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHH
Q psy3204         156 RRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV  235 (264)
Q Consensus       156 ~lqqQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRI  235 (264)
                      .+++++..|+..+.+|..++++|+.+++.+.+.++|||+|+++||||+|.++++|+|+||+|||||+|.++|++|+++|+
T Consensus         7 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~   86 (120)
T PF02996_consen    7 NLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRI   86 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHHH
Confidence            35678999999999999999999999865789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy3204         236 AFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       236 k~LeeqieKLqkiIq~~l~~~  256 (264)
                      +.++++++++++.+...-..+
T Consensus        87 ~~l~~~~~~l~~~~~~~~~~~  107 (120)
T PF02996_consen   87 KELEEQLEKLEKELAELQAQI  107 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888765443

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.89  E-value=2.5e-22  Score=163.82  Aligned_cols=94  Identities=23%  Similarity=0.468  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +..|+.++.+|..++++|+.+++...+.+++||||+++||+|+|.++++|+|+||+|||||+++++|++|+++|++.|++
T Consensus        29 ~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~  108 (140)
T PRK03947         29 LEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEK  108 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYIL  254 (264)
Q Consensus       241 qieKLqkiIq~~l~  254 (264)
                      +++++++.+...=.
T Consensus       109 ~~~~l~~~l~~~~~  122 (140)
T PRK03947        109 ALEKLEEALQKLAS  122 (140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988876543

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.87  E-value=6.3e-21  Score=150.53  Aligned_cols=96  Identities=29%  Similarity=0.556  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +++|+..+.+|..+++.|+.+.....+.+++||+|+++||||+|.++++|+|+||+|||||++.++|++++++|++.+++
T Consensus        22 ~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~  101 (129)
T cd00890          22 LQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEK  101 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYILIF  256 (264)
Q Consensus       241 qieKLqkiIq~~l~~~  256 (264)
                      +++++++.+...-..+
T Consensus       102 ~~~~l~~~~~~~~~~~  117 (129)
T cd00890         102 QIEKLEKQLEKLQDQI  117 (129)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999887654443

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG3130|consensus

Probab=99.09  E-value=1e-10  Score=113.69  Aligned_cols=98  Identities=18%  Similarity=0.354  Sum_probs=88.7

Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHH
Q psy3204         156 RRQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV  235 (264)
Q Consensus       156 ~lqqQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRI  235 (264)
                      +++-..+-++.....|...++.+..++ .+-..+||||+|.-.|+||+|+.++.|+|..|.|||.+.|..+|.+++++|+
T Consensus        14 ~~~~ete~~~~v~~dye~~~erl~~~~-kkLs~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~   92 (514)
T KOG3130|consen   14 RLEVETECRKKVDNDYEALRERLSTLP-KKLSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRK   92 (514)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhh-hhcccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHHH
Confidence            445556777778888999999999986 4678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy3204         236 AFVTQQMEKLQFIFLLYIL  254 (264)
Q Consensus       236 k~LeeqieKLqkiIq~~l~  254 (264)
                      ++++++++++.+.|..++-
T Consensus        93 ~~~r~q~~~l~~~~~n~~~  111 (514)
T KOG3130|consen   93 EHVRKQIDDLKKVMKNFES  111 (514)
T ss_pred             HHHHHHHHHHHHHHHhhHH
Confidence            9999999999999988763

>KOG3047|consensus

Probab=98.87  E-value=1.4e-08  Score=86.85  Aligned_cols=90  Identities=17%  Similarity=0.310  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhC-CCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKIT-PSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVT  239 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk-~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Le  239 (264)
                      +..|+..-++|...+.+++.|. ...+..+.-+.||+++||.-.|.|+.+|+|-+|.|||+|++..+|++|++||...|+
T Consensus        39 ~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLk  118 (157)
T KOG3047|consen   39 FDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLK  118 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHH
Confidence            6677777788988888888864 234567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy3204         240 QQMEKLQFIFL  250 (264)
Q Consensus       240 eqieKLqkiIq  250 (264)
                      +-+++|++.-.
T Consensus       119 el~ekLqKdsm  129 (157)
T KOG3047|consen  119 ELMEKLQKDSM  129 (157)
T ss_pred             HHHHHHHHhHH
Confidence            99999987643

>KOG3313|consensus

Probab=97.90  E-value=0.00012  Score=65.15  Aligned_cols=91  Identities=15%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhCCCC---CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHH
Q psy3204         160 NNGALKRAQVKFQDSKESLDKITPSS---QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVA  236 (264)
Q Consensus       160 QLqqLk~Aq~Kf~eskeALe~Lk~~~---egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk  236 (264)
                      +...|+.-+-++..+.+.+..+...+   +..+..+-|..++|.++.|.++++|-+=+|+...+|.+++||.+++++++.
T Consensus        59 ~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~  138 (187)
T KOG3313|consen   59 QKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLT  138 (187)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHH
Confidence            34556666666777777777775332   236888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         237 FVTQQMEKLQFIFL  250 (264)
Q Consensus       237 ~LeeqieKLqkiIq  250 (264)
                      ...++++.++..+.
T Consensus       139 sa~k~l~~~~~Dld  152 (187)
T KOG3313|consen  139 SAVKSLDVLEEDLD  152 (187)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.84  E-value=0.0017  Score=51.35  Aligned_cols=57  Identities=19%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILI  255 (264)
Q Consensus       186 egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~  255 (264)
                      .+.+|+|+||.+.||.-.+.+.             ++.+++.+++++++++.+++++++++..+..+-..
T Consensus        67 ~~~~v~v~iG~~~~ve~~~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~  123 (129)
T cd00890          67 DDDKVLVDLGTGVYVEKSLEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE  123 (129)
T ss_pred             CCCEEEEEecCCEEEEecHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999998876             47899999999999999999999999999887654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=96.43  E-value=0.0062  Score=48.78  Aligned_cols=61  Identities=11%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         171 FQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFL  250 (264)
Q Consensus       171 f~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq  250 (264)
                      +.++..++++|...+.+..++.++|.                     +||+++.++|+..++.|++.++..++.+++.+.
T Consensus        33 ~~E~~~v~~eL~~l~~d~~vyk~VG~---------------------vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~   91 (110)
T TIGR02338        33 LKEAEKALEELERLPDDTPVYKSVGN---------------------LLVKTDKEEAIQELKEKKETLELRVKTLQRQEE   91 (110)
T ss_pred             HHHHHHHHHHHHcCCCcchhHHHhch---------------------hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445554434456677777776                     999999999999999999999999988887765


Q ss_pred             HH
Q psy3204         251 LY  252 (264)
Q Consensus       251 ~~  252 (264)
                      ..
T Consensus        92 ~l   93 (110)
T TIGR02338        92 RL   93 (110)
T ss_pred             HH
Confidence            43

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=96.43  E-value=0.0015  Score=53.30  Aligned_cols=91  Identities=13%  Similarity=0.253  Sum_probs=73.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCC-CCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHH
Q psy3204         159 PNNGALKRAQVKFQDSKESLDKITP-SSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAF  237 (264)
Q Consensus       159 qQLqqLk~Aq~Kf~eskeALe~Lk~-~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~  237 (264)
                      ..|..++.=-++|...++-|..++. .....+=|.-++..+  .|.+.+.+.|=.-+|.|=.+++|.+++++++.||+.+
T Consensus         2 ksL~hWq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f--~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDY   79 (99)
T PF13758_consen    2 KSLYHWQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDF--GGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDY   79 (99)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhc--CcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Confidence            4578888889999999999999964 222333345555443  3888888877777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         238 VTQQMEKLQFIFLL  251 (264)
Q Consensus       238 LeeqieKLqkiIq~  251 (264)
                      +++|++.|++.+..
T Consensus        80 V~~Ni~tleKql~~   93 (99)
T PF13758_consen   80 VQQNIETLEKQLEA   93 (99)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=96.40  E-value=0.06  Score=41.19  Aligned_cols=47  Identities=17%  Similarity=0.298  Sum_probs=39.4

Q ss_pred             eEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         209 KVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       209 KVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~  256 (264)
                      +|...|| +.||+.+.+++++.++.+++.+++.++++++.+...-..+
T Consensus        46 ~~y~~vG-~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l   92 (106)
T PF01920_consen   46 KVYKSVG-KMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKL   92 (106)
T ss_dssp             EEEEEET-TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555665 5799999999999999999999999999998887665544

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=96.28  E-value=0.0072  Score=48.57  Aligned_cols=87  Identities=13%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHH--------
Q psy3204         157 RQPNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQ--------  228 (264)
Q Consensus       157 lqqQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAi--------  228 (264)
                      ++++++.|...+..+..+++.++...      +++      -+++++  +...++|.+|.|.||+.++++..        
T Consensus        11 l~~~i~~l~~~i~~l~~~i~e~~~~~------~~L------~~l~~~--~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~   76 (126)
T TIGR00293        11 LQQQVESLQAQIAALRALIAELETAI------ETL------EDLKGA--EGKETLVPVGAGSFVKAKVKDTDKVLVSIGS   76 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------Hhcccc--CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCC
Confidence            45566666666666666666665542      333      223444  56889999999999999999887        


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3204         229 -----DYFKRRVAFVTQQMEKLQFIFLLYILIFC  257 (264)
Q Consensus       229 -----efleRRIk~LeeqieKLqkiIq~~l~~~~  257 (264)
                           .-++.-+++++++++.+++.+..+-..+-
T Consensus        77 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~  110 (126)
T TIGR00293        77 GYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALA  110 (126)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 66799999999999999999887765543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=96.10  E-value=0.014  Score=46.25  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      ++.|.....+...+.+.|+.+   ..+..++.++|.                     +||+++.++|...++.|++.++.
T Consensus        22 ~~~l~~~~~E~~~v~~EL~~l---~~d~~vy~~VG~---------------------vfv~~~~~ea~~~Le~~~e~le~   77 (105)
T cd00632          22 RQKVEAQLNENKKALEELEKL---ADDAEVYKLVGN---------------------VLVKQEKEEARTELKERLETIEL   77 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC---CCcchHHHHhhh---------------------HHhhccHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443   345566666665                     99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYIL  254 (264)
Q Consensus       241 qieKLqkiIq~~l~  254 (264)
                      .++++++.+...-.
T Consensus        78 ~i~~l~~~~~~l~~   91 (105)
T cd00632          78 RIKRLERQEEDLQE   91 (105)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998887765433

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=95.17  E-value=0.022  Score=46.73  Aligned_cols=51  Identities=14%  Similarity=0.315  Sum_probs=42.9

Q ss_pred             cCCeEEEEecCcEEEEeChHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         206 DADKVVIDIGTGFYVEKSIPDAQD-------------YFKRRVAFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       206 DteKVLVDIGTGYYVEKSidEAie-------------fleRRIk~LeeqieKLqkiIq~~l~~~  256 (264)
                      +..+++|.||.|+||+.++.+..+             -++.-+++++++++.+++.+..+-...
T Consensus        54 ~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l  117 (140)
T PRK03947         54 EGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEAL  117 (140)
T ss_pred             CCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999876655             678999999999999999888765443

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=94.96  E-value=0.06  Score=43.42  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=52.0

Q ss_pred             CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       186 egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~  256 (264)
                      ...+++||||++.||.-.+.+..             +.++.-++.++++++.+++++.+++..+..+....
T Consensus        67 ~~~~v~v~iG~g~~vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l  124 (129)
T cd00584          67 DTDKVLVDLGTGYYVEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL  124 (129)
T ss_pred             CCCEEEEEcCCCEEEEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999998766             67899999999999999999999999999887653

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=91.71  E-value=0.28  Score=41.79  Aligned_cols=48  Identities=19%  Similarity=0.400  Sum_probs=41.5

Q ss_pred             ecCCeEEEEecCcEEEEeChHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         205 ADADKVVIDIGTGFYVEKSIPDAQD-------------YFKRRVAFVTQQMEKLQFIFLLY  252 (264)
Q Consensus       205 ~DteKVLVDIGTGYYVEKSidEAie-------------fleRRIk~LeeqieKLqkiIq~~  252 (264)
                      .+...|||.+|.|-||.-.+.+..+             -.++|+++|++++++|+++++.=
T Consensus        46 ~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K  106 (130)
T PRK01203         46 DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKL  106 (130)
T ss_pred             CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999988887765             36889999999999999998753

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=87.24  E-value=0.72  Score=39.82  Aligned_cols=43  Identities=21%  Similarity=0.505  Sum_probs=28.0

Q ss_pred             eEEEEecCcEEEEeChHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         209 KVVIDIGTGFYVEKSIPD-------------AQDYFKRRVAFVTQQMEKLQFIFLL  251 (264)
Q Consensus       209 KVLVDIGTGYYVEKSidE-------------AiefleRRIk~LeeqieKLqkiIq~  251 (264)
                      .+||.||.|-||.-.+.+             |..-++.=++.|++++++|.+.++.
T Consensus        57 E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~  112 (145)
T COG1730          57 EVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEK  112 (145)
T ss_pred             eEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777666665             4455666667777776666665543

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=86.72  E-value=1.3  Score=34.76  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=33.5

Q ss_pred             CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYI  253 (264)
Q Consensus       186 egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l  253 (264)
                      ...+|+|+||++.||.=.+.+..++             .+.=++.+++.++.+++++.+++..+..+.
T Consensus        57 ~~~~vlV~lG~~~~vE~s~~eA~~~-------------l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~  111 (120)
T PF02996_consen   57 DTDKVLVSLGAGYYVEMSLEEAIEF-------------LKKRIKELEEQLEKLEKELAELQAQIEQLE  111 (120)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCCEEEEEeeCCeEEEecHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777666654432             455555666666666666666666555443

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2zdi_C	151	Crystal Structure Of Prefoldin From Pyrococcus Hori		2e-05

>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii Ot3 Length = 151

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           L  A+ + Q  +E+L+ +    +  P I+VP+    +++G I D +  ++ +G+G+ VE+
Sbjct: 35  LNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVER 94
Query: 223 SIPDAQDYFKRRV 235
           SI +A  + ++R+
Sbjct: 95  SIDEAISFLEKRL 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	3e-21
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	1e-20

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 85.8 bits (212), Expect = 3e-21
 Identities = 15/84 (17%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           A++    + +  +++L  I     G+  +VP+    +++ ++ D  +V++ +G G  ++K
Sbjct: 26  AVRATISELEILEKTLSDI-QGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
           +  DA +  K +   +   ++K+ 
Sbjct: 85  NFEDAMESIKSQKNELESTLQKMG 108

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 84.7 bits (209), Expect = 1e-20
 Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 163 ALKRAQVKFQDSKESLDKIT-PSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
            L  A+ + Q  +E+L+ +     +   I+VP+    +++G I D +  ++ +G+G+ VE
Sbjct: 34  LLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVE 93

Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
           +SI +A  + ++R+    + ++K Q
Sbjct: 94  RSIDEAISFLEKRLKEYDEAIKKTQ 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.93
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.92
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	97.68
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	97.12
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	86.61

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.93  E-value=3.7e-25  Score=177.63  Aligned_cols=94  Identities=17%  Similarity=0.335  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +++|+.++.+|.+++++|+.+++ +.+.++|||||+++||||+|.|+++|+|+||+|||||+|.++|++|+++|++.+++
T Consensus        24 ~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~  102 (133)
T 1fxk_C           24 MEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELES  102 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986 67899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYILI  255 (264)
Q Consensus       241 qieKLqkiIq~~l~~  255 (264)
                      +++++++.+...=..
T Consensus       103 ~~~~l~~~l~~l~~~  117 (133)
T 1fxk_C          103 TLQKMGENLRAITDI  117 (133)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988765443

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.92  E-value=3.8e-24  Score=176.19  Aligned_cols=95  Identities=22%  Similarity=0.406  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCC-CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSS-QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVT  239 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~-egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Le  239 (264)
                      +++|+.|.+++.++.++++.++..+ .+.++|||||+++||||+|.|+++|+|+||+|||||+|.++|++|+++|++.++
T Consensus        32 ~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~  111 (151)
T 2zdi_C           32 LELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYD  111 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHH
Confidence            9999889998888888888887655 889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3204         240 QQMEKLQFIFLLYILI  255 (264)
Q Consensus       240 eqieKLqkiIq~~l~~  255 (264)
                      ++++++++.+...=..
T Consensus       112 ~~l~~l~~~l~~l~~~  127 (151)
T 2zdi_C          112 EAIKKTQGALAELEKR  127 (151)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988765443

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=97.68  E-value=0.00057  Score=52.61  Aligned_cols=73  Identities=5%  Similarity=0.060  Sum_probs=53.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHH
Q psy3204         159 PNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFV  238 (264)
Q Consensus       159 qQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~L  238 (264)
                      .+++.++.-..+...+.+.|+.+.   .+..|+.++|                     |+||+.+.++|+..+++|++.+
T Consensus        27 ~q~~~l~~~~~e~~~~~~eL~~l~---~d~~vy~~iG---------------------~vfv~~~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A           27 QQKQKVQLELTEAKKALDEIESLP---DDAVVYKTVG---------------------TLIVKTTKDKAVAELKEKIETL   82 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSC---TTCCEEEEET---------------------TEEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC---CCcHhHHHhh---------------------HHHhhccHHHHHHHHHHHHHHH
Confidence            345555555555555555555543   4555777776                     9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy3204         239 TQQMEKLQFIFLLYILI  255 (264)
Q Consensus       239 eeqieKLqkiIq~~l~~  255 (264)
                      ++.+++|++.+...-.+
T Consensus        83 e~~i~~le~~~~~l~~~   99 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEK   99 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998877655444

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=97.12  E-value=0.0035  Score=47.58  Aligned_cols=36  Identities=0%  Similarity=-0.001  Sum_probs=32.5

Q ss_pred             cEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         217 GFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLY  252 (264)
Q Consensus       217 GYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~  252 (264)
                      |+||+.+.++|...+++|++.+++.++.+++.+...
T Consensus        56 ~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~   91 (107)
T 1fxk_A           56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERV   91 (107)
T ss_dssp             TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999988776544

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=86.61  E-value=2.4  Score=34.23  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhC-CC-----------------CCCCceEEecCCceeEEEEEecCCeEEEEecCcEEE
Q psy3204         159 PNNGALKRAQVKFQDSKESLDKIT-PS-----------------SQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYV  220 (264)
Q Consensus       159 qQLqqLk~Aq~Kf~eskeALe~Lk-~~-----------------~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYV  220 (264)
                      +++..-+....++..+++.|+.++ ..                 ....+|+|+||++.||.=.+.+...           
T Consensus        33 ~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~-----------  101 (151)
T 2zdi_C           33 ELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAIS-----------  101 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHH-----------
Confidence            347666777889999999999886 32                 1346899999999999998887543           


Q ss_pred             EeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         221 EKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYIL  254 (264)
Q Consensus       221 EKSidEAiefleRRIk~LeeqieKLqkiIq~~l~  254 (264)
                        -+++=+++++++++.+++.++.++..+..+..
T Consensus       102 --~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~  133 (151)
T 2zdi_C          102 --FLEKRLKEYDEAIKKTQGALAELEKRIGEVAR  133 (151)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              35666777777777777777777776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	1e-16

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 15/84 (17%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           A++    + +  +++L  I     G+  +VP+    +++ ++ D  +V++ +G G  ++K
Sbjct: 26  AVRATISELEILEKTLSDI-QGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
           +  DA +  K +   +   ++K+ 
Sbjct: 85  NFEDAMESIKSQKNELESTLQKMG 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.91
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	93.81
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	82.7

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.91  E-value=6.6e-24  Score=167.76  Aligned_cols=93  Identities=16%  Similarity=0.324  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204         161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ  240 (264)
Q Consensus       161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee  240 (264)
                      +..|+..+++|..++++|+.++. ..++++|||||+++||||+|.++++|+|+||+|||||+|.++|++|+++|++.+++
T Consensus        24 i~~l~~~~~e~~~~~~~L~~l~~-~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~  102 (133)
T d1fxkc_          24 MEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELES  102 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984 56889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3204         241 QMEKLQFIFLLYIL  254 (264)
Q Consensus       241 qieKLqkiIq~~l~  254 (264)
                      +++++++.+...=.
T Consensus       103 ~~~~l~~~~~~~~~  116 (133)
T d1fxkc_         103 TLQKMGENLRAITD  116 (133)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888766533

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.81  E-value=0.38  Score=35.27  Aligned_cols=46  Identities=4%  Similarity=0.041  Sum_probs=35.8

Q ss_pred             EEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         210 VVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       210 VLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~  256 (264)
                      |.=.|| |++|+.+.++|+.-++.|++.++..++.+++.+...-.++
T Consensus        50 vyk~vG-~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l   95 (107)
T d1fxka_          50 VYKSSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL   95 (107)
T ss_dssp             EEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc-chhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455 7889999999999999999999988888888776554443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.70  E-value=0.9  Score=33.66  Aligned_cols=58  Identities=7%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204         186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIF  256 (264)
Q Consensus       186 egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~  256 (264)
                      ...+++|+||++.||.=.+.+.-++             .+.=++.+++.++.+.+++++++..+.....+.
T Consensus        68 ~~~~vlV~lG~g~~vE~~~~eA~~~-------------l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          68 DTSEVIMSVGAGVAIKKNFEDAMES-------------IKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCeeeeecHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999888876432             455577788888888888888888777665543