Psyllid ID: psy3209
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.760 | 0.833 | 0.282 | 2e-44 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.781 | 0.878 | 0.284 | 3e-44 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.749 | 0.841 | 0.278 | 6e-44 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.820 | 0.926 | 0.260 | 6e-43 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.756 | 0.540 | 0.292 | 2e-41 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.754 | 0.531 | 0.291 | 1e-40 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.760 | 0.883 | 0.264 | 4e-40 | |
| B4HNS0 | 857 | Facilitated trehalose tra | N/A | N/A | 0.760 | 0.502 | 0.275 | 1e-39 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.760 | 0.883 | 0.261 | 2e-39 | |
| B3MG58 | 866 | Facilitated trehalose tra | N/A | N/A | 0.758 | 0.496 | 0.281 | 3e-39 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 212/443 (47%), Gaps = 12/443 (2%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L ++
Sbjct: 56 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLVGG 114
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKNT+L T+ F+ S LL A + R LSG GV +P+Y
Sbjct: 115 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 174
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F I IPE
Sbjct: 175 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPE 234
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTN--ENMKNKSGYRELVSNYS 352
TP +++ + + A+K+L+W +GK ++ EL I+ + E ++S +L+ +
Sbjct: 235 TPRWYVSRGRDD-RARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKKTN 293
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L+I L F Q+LSG++ ++ Y + I C II V+ + F +
Sbjct: 294 L-KPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATL 352
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGI 465
L+D GRK L +S ++ L FY + W+ +F + +SLG
Sbjct: 353 LIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGF 412
Query: 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSG 525
G IP ++ E+ P ++ SAAS+A+ +F++ K + + + G + F +
Sbjct: 413 GPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCV 472
Query: 526 INVLFTFFFIFETKGKSFQQIQN 548
+ ++F ++ ET+GKS + I+
Sbjct: 473 VGLVFVIMYVPETQGKSLEDIER 495
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 218/453 (48%), Gaps = 10/453 (2%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA + S+ +VG + S AL Q + F++ ++ SWV M L +
Sbjct: 43 QILAAIAVSMGSMVVGFASAYTSPALVSMQNTT-ITSFKVTEQEASWVGGIMPLAGLAGG 101
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G ++ GRKNT+L T++ F+ + LL FA S + + R LSG G+ +P+Y
Sbjct: 102 IAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVY 161
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L I ++P+ F + + IPE
Sbjct: 162 LGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPE 221
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYREL-VSNYSY 353
TP + + + + A+K+L+W +GK ++ EL IV + E ++ S + S
Sbjct: 222 TPRWFVTRGREE-RARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFDLMKRSN 280
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
K L+I L F Q+LSG++ ++ Y + + I C II V+ F + L
Sbjct: 281 LKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVL 340
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGIG 466
+D GRK L +S ++ L FY+ W+ ++ I +S G+G
Sbjct: 341 IDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVG 400
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGI 526
IP +L E+ P ++ SAAS+A+ +F++ K + + G + F F+ + I
Sbjct: 401 PIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLI 460
Query: 527 NVLFTFFFIFETKGKSFQQIQNILKKKTATTQS 559
+ F FF+ ET+GKS ++I+ + + S
Sbjct: 461 GLFFVIFFVPETQGKSLEEIERKMMGRVRRMSS 493
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 225/442 (50%), Gaps = 17/442 (3%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AAF+ S+ VG + S A+ + ++ E+++WV M L ++
Sbjct: 51 QLLAAFAVSVGSMNVGFSSGYTSPAVLTMN-----ITLDITKEEITWVGGLMPLAALVGG 105
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRK T++ T++ F +L A + +F R++ G+ G+ P+Y
Sbjct: 106 IVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVY 165
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
I E E+RG L + T GIL + VG Y+ + L IP+ FF+ + PE
Sbjct: 166 IGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPE 225
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMK-NKSGYRELVSNYSY 353
TP +++ K Q A+KSL W +GK+ NI +E+ ++ ++ E+ + + +++L S Y
Sbjct: 226 TPRWYVSKARVQ-EARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGGNAFKQLFSK-RY 283
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
A++I L Q+L+G++ ++ YA++ + II V+ ++ F + L
Sbjct: 284 LPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATML 343
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY-------WVSYLFTSLFGITYSLGIG 466
+D GRK L +S+ ++ L A FY ++ W+ ++ + +S+G G
Sbjct: 344 IDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFG 403
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINK-FYKIVQINFGLYYMFAFYAICSG 525
IP +L E+ P+ ++ +AAS+A+ +F++ K F I+ + ++ F IC G
Sbjct: 404 PIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIG 463
Query: 526 INVLFTFFFIFETKGKSFQQIQ 547
+LF FF+ ETKGKS ++I+
Sbjct: 464 -GLLFVIFFVPETKGKSLEEIE 484
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 233/491 (47%), Gaps = 26/491 (5%)
Query: 66 QDMKSQVGIDIEPRSEYDEITTLVVTWGLWSWKTSKGDHYRRQIMGYTKQAIAAFSASLP 125
Q M SQ +I+P + D++ ++ +R M YT Q +AA + S+
Sbjct: 8 QTMSSQ---NIKPAKDSDDVLH------------TQFKEVKRSPMRYTMQLLAALAVSMA 52
Query: 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG 185
++G ++ S AL + FE+ + W+ + M L ++ I G ++ G
Sbjct: 53 SLMIGYSSSYTSPALVSMRDNTTA-TFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIG 111
Query: 186 RKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRG 245
R+NT+L T+L FL L A + + R + G GV +P+Y+ E E+RG
Sbjct: 112 RRNTILSTALPFLAGWLFIALATNVAMILVGRSICGFCVGVASLSLPVYLGESIQPEVRG 171
Query: 246 TLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNN 305
+L + T GIL G Y+ ++ L ++ IP++F I IPETP ++I K
Sbjct: 172 SLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKI 231
Query: 306 QVAAKKSLEWFKGKSQNITEELDEI--VLTTNENMKNKSGYRELVSNYSYRKALIIVLVT 363
+ A+KSL+W +GK+ +I+EELD I + +E + + EL ++ K + I L
Sbjct: 232 K-EARKSLQWLRGKTADISEELDSIQKMHIESERIATEGALIELFRK-NHIKPVFISLGL 289
Query: 364 SFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLN 423
F Q+ SG++ ++ Y + + II ++ ++ F + ++D GRK L
Sbjct: 290 MFFQQFSGINAVIFYTVQIFKDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLL 349
Query: 424 MLSAFLSSGVMIVLAACFYWN--FDY----WVSYLFTSLFGITYSLGIGIIPTTLLSELF 477
+S+ L + FY D W+ + ++ I +S G G IP ++ E+
Sbjct: 350 YISSILMCITLFTFGTFFYVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEIL 409
Query: 478 PTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFE 537
P ++ +AAS+A+ +F++ K Y+ + ++ G Y F + + +F + E
Sbjct: 410 PVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPE 469
Query: 538 TKGKSFQQIQN 548
T+G+S ++I+
Sbjct: 470 TRGRSLEEIER 480
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Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 216/445 (48%), Gaps = 16/445 (3%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L +
Sbjct: 332 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLAGG 390
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKNT+L T+ F+ S LL A + R LSG+ G+ +P+Y
Sbjct: 391 ILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVY 450
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F + IPE
Sbjct: 451 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPE 510
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYREL-VSNYSY 353
TP +++ + N + A+K+L+W +G+ ++ EL I + + ++ S L + N +
Sbjct: 511 TPRWYVSR-NREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKAN 569
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
K L+I L F Q+LSG++ ++ Y I C II V+ + F + L
Sbjct: 570 LKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVL 629
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFDY-----WVSYLFTSLFGITYSLGIG 466
+D GRK L +S ++ L FY N D W+ +F + +SLG G
Sbjct: 630 IDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFG 689
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI---NFGLYYMFAFYAIC 523
IP ++ E+ P ++ SAAS+A+ +F++ K + + N G ++MF +IC
Sbjct: 690 PIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFG--SIC 747
Query: 524 SGINVLFTFFFIFETKGKSFQQIQN 548
+ +LF ++ ET+GKS + I+
Sbjct: 748 I-VGLLFVIVYVPETQGKSLEDIER 771
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 214/446 (47%), Gaps = 18/446 (4%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L +
Sbjct: 345 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLAGG 403
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKNT+L T+ F+ S LL A + R LSG GV +P+Y
Sbjct: 404 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 463
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F + IPE
Sbjct: 464 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPE 523
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTN--ENMKNKSGYRELVSNYS 352
TP +++ + + A+K+L+W +GK ++ EL I+ + E ++S +L+ +
Sbjct: 524 TPRWYVSRGRDD-RARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKAN 582
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L+I L F Q+LSG++ ++ Y + I C II V+ + F +
Sbjct: 583 L-KPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATM 641
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGI 465
L+D GRK L +S ++ L FY W+ ++ + +SLG
Sbjct: 642 LIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGF 701
Query: 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINK-FYKIVQI--NFGLYYMFAFYAI 522
G IP ++ E+ P ++ SAAS+A+ +F++ K F I+ G ++MF +I
Sbjct: 702 GPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFG--SI 759
Query: 523 CSGINVLFTFFFIFETKGKSFQQIQN 548
C I + F F++ ET+GKS + I+
Sbjct: 760 CV-IGLAFVIFYVPETQGKSLEDIER 784
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 208/443 (46%), Gaps = 12/443 (2%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL T + FE+ + SWV M L +
Sbjct: 28 QVLAALSVSLCSLVVGFVSAYTSPALVS-MTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GR+NT+L T++ F+ SSLL A + + R L+G G+ +P+Y
Sbjct: 87 ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G ++ + L + +P+ F I + IPE
Sbjct: 147 LGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIIIPE 206
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNE--NMKNKSGYRELVSNYS 352
TP + + + + A+K+L+W +GK ++ EL +++ + E + ++ EL +
Sbjct: 207 TPRWFVNRGQEE-RARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLELFKRIN 265
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L I L F Q+ SG++ ++ Y + I C II ++ F
Sbjct: 266 L-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGII 324
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGI 465
L+D GRK L +S + +L FY W+ ++ + +SLG
Sbjct: 325 LIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGF 384
Query: 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSG 525
G IP ++ E+ P ++ AAS+ + +F++ K ++ + + G + F + +
Sbjct: 385 GPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCI 444
Query: 526 INVLFTFFFIFETKGKSFQQIQN 548
+ + F ++ ET+GKS ++I+
Sbjct: 445 VGLFFVIIYVPETRGKSLEEIER 467
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 210/443 (47%), Gaps = 12/443 (2%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL T + FE+ + SWV M L +
Sbjct: 396 QVLAALSVSLGSLVVGFVSAYTSPALVSM-TDRNITSFEVTQDAGSWVGGIMPLAALAGG 454
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GR+NT+L T++ F+ SSLL A + + R L+G G+ +P+Y
Sbjct: 455 ITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVY 514
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G ++ + L + +P+ F I IPE
Sbjct: 515 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPE 574
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS-GYRELVSNYSY 353
TP + + + + A+K+L+W +GK ++ EL ++ + + + S + +
Sbjct: 575 TPRWFVGRGLEE-RARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLELLKLNN 633
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
K L I L F Q+ SG++ ++ Y + I C II ++ + F L
Sbjct: 634 LKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVL 693
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGIG 466
+D AGRK L +S + VL FY + W+ ++ + +SLG G
Sbjct: 694 IDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGFSLGFG 753
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF-AFYAICSG 525
IP ++ E+ P ++ SAAS+A+ +F++ K ++ + + G + F F AIC
Sbjct: 754 PIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICF- 812
Query: 526 INVLFTFFFIFETKGKSFQQIQN 548
+ + F ++ ET+GK+ + I+
Sbjct: 813 VGLFFVIIYVPETQGKTLEDIER 835
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila sechellia (taxid: 7238) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 206/443 (46%), Gaps = 12/443 (2%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL T + FE+ + SWV M L +
Sbjct: 28 QVLAALSVSLCSLVVGFVSAYTSPALVS-MTDRTITSFEVTKDAGSWVGGIMPLAALAGG 86
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GR+ T+L T++ F+ SSLL A + + R L+G G+ +P+Y
Sbjct: 87 ITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVY 146
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G ++ + L + +P+ F I + IPE
Sbjct: 147 LGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPE 206
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNE--NMKNKSGYRELVSNYS 352
TP + + + + A+K+L+W +GK ++ EL +++ + E + ++ EL +
Sbjct: 207 TPRWFVNRGQEE-RARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCLELFKRIN 265
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L I L F Q+ SG++ ++ Y + I C II ++ F
Sbjct: 266 L-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIL 324
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGI 465
L+D GRK L +S + +L FY W+ ++ + +SLG
Sbjct: 325 LIDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGF 384
Query: 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSG 525
G IP ++ E+ P ++ AAS+ + +F++ K ++ + + G + F + +
Sbjct: 385 GPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCI 444
Query: 526 INVLFTFFFIFETKGKSFQQIQN 548
+ + F + ET+GKS ++I+
Sbjct: 445 VGLFFVIICVPETRGKSLEEIER 467
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 213/444 (47%), Gaps = 14/444 (3%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + FE+ + SWV M L +
Sbjct: 405 QVLAALSVSLGSLVVGFVSAYTSPALVSMVDRN-ITSFEVTPQAASWVGGIMPLAGLAGG 463
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G ++ GR+NT+L T++ F+ SSLL A + + R L+G G+ +P+Y
Sbjct: 464 IAGGPFIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVY 523
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F + IPE
Sbjct: 524 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLVLMFLIPE 583
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKN--KSGYRELVSNYS 352
TP + + + + A+K+L W +GK ++ EL ++ + + + ++ EL+ +
Sbjct: 584 TPRWFVSRGREE-RARKALSWLRGKEADVEPELKGLMRSQADADRQGTQNTMLELLKRSN 642
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
+ K L I L F Q+LSG++ ++ Y + + I C II V+ + F +
Sbjct: 643 F-KPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATL 701
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD-------YWVSYLFTSLFGITYSLGI 465
L+D AGRK L +S + VL FY W+ ++ + +SLG
Sbjct: 702 LIDRAGRKILLYVSNIAMIITLFVLGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGF 761
Query: 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF-AFYAICS 524
G IP ++ E+ P ++ SAAS+A+ +F++ K ++ + G + F F AIC
Sbjct: 762 GPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICF 821
Query: 525 GINVLFTFFFIFETKGKSFQQIQN 548
I + F ++ ET+GK+ + I+
Sbjct: 822 -IGLFFVILYVPETQGKTLEDIER 844
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila ananassae (taxid: 7217) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | ||||||
| 291461587 | 450 | sugar transporter 14 [Nilaparvata lugens | 0.770 | 0.971 | 0.431 | 1e-96 | |
| 193610443 | 466 | PREDICTED: facilitated trehalose transpo | 0.788 | 0.959 | 0.345 | 2e-83 | |
| 328723330 | 466 | PREDICTED: facilitated trehalose transpo | 0.788 | 0.959 | 0.345 | 4e-77 | |
| 328697684 | 492 | PREDICTED: facilitated trehalose transpo | 0.774 | 0.892 | 0.356 | 6e-74 | |
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.768 | 0.908 | 0.338 | 3e-66 | |
| 328703922 | 466 | PREDICTED: facilitated trehalose transpo | 0.772 | 0.939 | 0.322 | 1e-61 | |
| 357610633 | 414 | hypothetical protein KGM_07198 [Danaus p | 0.680 | 0.932 | 0.358 | 2e-60 | |
| 322790606 | 450 | hypothetical protein SINV_12233 [Solenop | 0.767 | 0.966 | 0.315 | 2e-59 | |
| 91094697 | 450 | PREDICTED: similar to GA11424-PA [Tribol | 0.761 | 0.96 | 0.340 | 1e-58 | |
| 91089779 | 450 | PREDICTED: similar to GA11424-PA [Tribol | 0.761 | 0.96 | 0.343 | 1e-58 |
| >gi|291461587|dbj|BAI83428.1| sugar transporter 14 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/452 (43%), Positives = 291/452 (64%), Gaps = 15/452 (3%)
Query: 110 MGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLG 169
M ++ AA SA + +F+ GCWL WPS AL K + + F ++ +++SWVVA++D+G
Sbjct: 1 MSVFRETSAAVSACICMFVTGCWLAWPSPALRKLEVQGGANVF-IEGDEISWVVASLDVG 59
Query: 170 NILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFT 229
N++SPIP+ Y++D+ GRK LL T ++L +LT + Y+LF SR LSGIGKG+ F+
Sbjct: 60 NMVSPIPASYLVDRIGRKPVLLATGPLYLICWMLTFVPGTPYFLFLSRFLSGIGKGIAFS 119
Query: 230 VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITF 289
+ PMY+ EI E+RG +ST+ TG L+GG L VGP + YQ LN I + P++FF+TF
Sbjct: 120 ICPMYLGEIASVEVRGAISTISTGALWGGSLLMFIVGPLVSYQWLNTIGAIFPIIFFMTF 179
Query: 290 MFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNIT--EELDEIVLTTNENMKNKSGYREL 347
++IPE+PY ++++ + A+KSL+W + + +T +EL+++ E MK K + +L
Sbjct: 180 LWIPESPYGCLMRNKVE-EARKSLQWLREGADQLTIEKELEQMKENVEEEMKTKGTFVDL 238
Query: 348 VSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE-HHGLIGRTECLIIFSVLLVVT 406
V+ S RKA IV+V+S QRL G+S +L+++STTLP ++ +++F ++L +
Sbjct: 239 VAIPSNRKATTIVMVSSAFQRLCGISAVLAFSSTTLPNVGFQFFHVSQVIVVFGIVLTIG 298
Query: 407 NFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA-ACFYWNFD------YWVSYLFTSLFGI 459
NF +PLVD GRK L S S G+ I A + FY+ W+ Y+ FGI
Sbjct: 299 NFLATPLVDHLGRKPLLFAS---SIGLAISTATSGFYYLLRKDPEQAAWLPYMALVCFGI 355
Query: 460 TYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAF 519
+S+G+G+IP+TLLSELFP NVKS AA+++SI FA ASF+ NK Y VQ + G + MF F
Sbjct: 356 FHSIGLGVIPSTLLSELFPANVKSRAAAVSSIVFAAASFVTNKMYHPVQHSIGTHAMFFF 415
Query: 520 YAICSGINVLFTFFFIFETKGKSFQQIQNILK 551
+++ + I +F FIFETKGKSF IQ LK
Sbjct: 416 FSMNAVIFTIFNALFIFETKGKSFPDIQKRLK 447
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193610443|ref|XP_001952640.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/466 (34%), Positives = 278/466 (59%), Gaps = 19/466 (4%)
Query: 111 GYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGN 170
G +Q A++ IFI G WL WPS + K+ + F + +++SW+VATMDLGN
Sbjct: 5 GVYRQTYVTVVATMSIFISGMWLGWPSSVVEKFVNHK--TDFNVTMDELSWIVATMDLGN 62
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230
++SP+ +G++MD GRK ++++ +F+ S LT+F + + L+T+RLL+G+GKG+ +TV
Sbjct: 63 MISPLMAGHLMDWMGRKLSIVVLGPLFIVSWALTLFVPTPWALYTARLLAGMGKGMSYTV 122
Query: 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFM 290
VP+Y+ EI IRG L ++F L+ G+L +GP + Y+TLN++ V+P++FF +
Sbjct: 123 VPVYLGEIASPAIRGGLGSVFCLQLHCGLLMESIIGPLVSYRTLNVVSAVVPVLFFAAVV 182
Query: 291 FIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350
++PE+PY+ ++K N + A L+WF+G ++ ELD++ + + M+N+S ++EL ++
Sbjct: 183 WVPESPYY-LLKRNRRPQAAVCLQWFRGGG-DVVHELDQMEVNVRKEMENRSTFQELFAS 240
Query: 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFAC 410
+AL IV+ QR G+S IL+Y+S LP++ L+ + + +++F V +VV NF
Sbjct: 241 RKDMRALSIVVAACAAQRGGGISCILAYSSLILPDNGPLLNKHQSIMLFGVTMVVVNFVA 300
Query: 411 SPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD----------YWVSYLFTSLFGIT 460
LVD GRK L +LS + + + A FY + W+ YL F +
Sbjct: 301 VALVDRVGRKPLLLLSEAGMAVLTLTFAVFFYCSRGDGSDWASRELAWLPYLCHWSFAVM 360
Query: 461 YSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFY 520
++ G+G +P L E+FP N++S ++IASI A SF+ NK + V +G++ MF +
Sbjct: 361 FATGVGFVPVVFLGEMFPVNIRSHCSAIASITLAFCSFVTNKMFLFVSDRYGVHAMFLLF 420
Query: 521 AICSGINVLFTFFFIFETKGKSFQQIQNILK-----KKTATTQSNE 561
+ + + +T+ + ETKGK+ Q+IQ L+ ++ T Q++
Sbjct: 421 TVVNLVGTFYTYKYAIETKGKTLQEIQEQLQDTVGPRRGKTNQNDN 466
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723330|ref|XP_001952643.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/466 (34%), Positives = 272/466 (58%), Gaps = 19/466 (4%)
Query: 111 GYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGN 170
G +Q A++ IFI G WL WPS + K+ E F +++SW+VATMDLGN
Sbjct: 5 GVYRQIYVTIVATMSIFISGMWLGWPSSVVEKFVKHE--TDFNATMDELSWIVATMDLGN 62
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230
++SP+ + ++MD GRK ++++ +F+ S LT+F + + L+T+RLL G+GKG+ +TV
Sbjct: 63 VISPLMASHLMDWMGRKLSIVVLGPLFIVSWALTLFVPTPWALYTARLLGGMGKGMSYTV 122
Query: 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFM 290
VP+Y+ EI IRG L ++F L+ G L +GP + Y+TLN++ V+P++FF+ +
Sbjct: 123 VPVYLGEIASPAIRGALGSVFCLQLHFGFLMEAVIGPLVSYRTLNVVSAVVPVLFFVAAV 182
Query: 291 FIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350
++PE+PY+ ++K + A L+WF+G ++ ELD + + + M+N+S ++EL ++
Sbjct: 183 WLPESPYY-LLKRGRRPQAAVCLQWFRGGG-DVVHELDLMEVNVRKEMENRSTFQELFAS 240
Query: 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFAC 410
+AL IV+ QR G+S IL+Y+S LP++ L+ + E +++F+V L V N
Sbjct: 241 RKDMRALAIVVAACATQRGGGISCILAYSSLILPDNGPLLNKHESVMLFAVTLAVVNLVA 300
Query: 411 SPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF----DY------WVSYLFTSLFGIT 460
LVD GRK L +LS + + + A FY + D+ W+ YL F +
Sbjct: 301 VALVDRVGRKPLLLLSEAGMAVLTLTFAVFFYCSRGDGSDWASRELAWLPYLCHWSFAVM 360
Query: 461 YSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFY 520
++ G+G +P L E+FP N++S ++IASI A SF+ NK + V +G + MF +
Sbjct: 361 FATGVGFVPVVFLGEMFPVNIRSHCSAIASITLAFCSFVTNKMFLFVSNRYGFHAMFLLF 420
Query: 521 AICSGINVLFTFFFIFETKGKSFQQIQNIL-----KKKTATTQSNE 561
+ + +T+ + ETKGK+ Q+IQ L +++ T Q++
Sbjct: 421 TVVNFAGTFYTYKYAIETKGKTLQEIQEQLQDTVGRRREKTNQNDN 466
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328697684|ref|XP_003240408.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 265/463 (57%), Gaps = 24/463 (5%)
Query: 111 GYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGN 170
G +Q A +AS+ IFI G WL WPS A K+ K + +++SW+V MDLGN
Sbjct: 5 GVHRQIYATIAASMSIFISGMWLGWPSSACEKF-IKHETGDLHVTYDQLSWIVCMMDLGN 63
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230
+SP+ GY+MD++GRK + +F+ S LT+F ++ L+T+RL++G+GKGV +TV
Sbjct: 64 FISPLFGGYLMDRYGRKMVIAALGPLFIVSWALTLFVPTTVALYTARLMAGLGKGVSYTV 123
Query: 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFM 290
VP+++ EI IRG L ++FT L G+LF + VGPY+ Y TLN V+P++FF F+
Sbjct: 124 VPVFLGEIAGVSIRGALGSVFTIQLSCGVLFEVIVGPYVSYHTLNATSAVVPVLFFAAFL 183
Query: 291 FIPETPYFHIIKDNNQVAAKKSLEWFKG------------KSQNITEELDEIVLTTNENM 338
++PE+PY+ ++K A + L W++G + EL + + ++M
Sbjct: 184 WVPESPYY-LLKVGRLAEATRCLRWYRGCDGESGSGDDDDGDATVAAELRLMEVNVRKDM 242
Query: 339 KNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLII 398
+N S EL +N + +AL +V+V QR G+S++ +Y++ LPE ++G+ E +I
Sbjct: 243 ENGSALSELFANRNNFRALAVVVVACMGQRAGGISSLTAYSALILPEPSPIMGKFEFIIA 302
Query: 399 FSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY---------WV 449
F+V+LVV NF LVD GRK L ++S G++ + +Y+ ++ W+
Sbjct: 303 FAVVLVVVNFVGLALVDRVGRKPLLIVSE-AGLGLVTFVFGVYYFAAEHYPGAAAAYRWL 361
Query: 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509
Y+ + F T+S+GIG IP L E+FP NV+S ++ AS+ A SF+ NK + +V
Sbjct: 362 PYVCHTTFAATFSIGIGFIPVVFLGEMFPVNVRSRCSAFASVTLAFFSFVSNKTFLVVSH 421
Query: 510 NFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILKK 552
+G Y MF ++ + F+ + ET GK+F +IQ IL
Sbjct: 422 KYGYYTMFWAFSAVNFACAYFSHRYAVETTGKTFVEIQEILDD 464
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 247/449 (55%), Gaps = 13/449 (2%)
Query: 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILS 173
+Q +AAF ASL + + G L WPS L K L E+ SW++A ++LGN+LS
Sbjct: 12 RQYVAAFVASLSVMMAGTSLGWPSPVLAKLSNGG--LTMAATNEQQSWMIAMLELGNLLS 69
Query: 174 PIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233
PIP G ++D GRK LLLT +++ S L+ + + + L+ RLL G G+ TV P+
Sbjct: 70 PIPFGVLVDVVGRKPCLLLTGPLYIVSWLMVMCSDTIGVLYWVRLLQGACIGIITTVAPI 129
Query: 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIP 293
YI EI IRG LST F G L GIL+ CVGP + Y L ++P F T ++IP
Sbjct: 130 YIGEIAGDSIRGALSTFFNGMLNAGILYVYCVGPLVSYDALTYYSLLVPCAFLGTCLWIP 189
Query: 294 ETPYFHIIKDNNQVAAKKSLEWFKGKSQN--ITEELDEIVLTTNENMKNKSGYRELVSNY 351
E+PY+++++D+++ A +S+ W G ++ + EL I +++++K R+L +
Sbjct: 190 ESPYYYVLRDDDK-KAHESVAWLHGNAEPDVVVRELMRIKAEARDDLQDKGSIRDLFGSR 248
Query: 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTL--PEHHGLIGRTECLIIFSVLLVVTNFA 409
RKA +IV + + LSG++T+L+YAS+T + + + ++ VL+ T F
Sbjct: 249 CSRKAFLIVQIVAAADVLSGMTTVLAYASSTFAHADTDKTLSPDQFTMLLGVLIFCTTFV 308
Query: 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFY--W----NFDYWVSYLFTSLFGITYSL 463
LVD GR+ L + S F +V +Y W + W+ + F + YS+
Sbjct: 309 TGYLVDKLGRRPLLLFSCFGCGAFELVTGLYYYKRWVGFESLGAWIPFTAIGSFAVIYSI 368
Query: 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAIC 523
G+G + TL E+FP+NV+ A++I S+ + SF+ K Y+++ +G++ + Y
Sbjct: 369 GLGPLLPTLQGEMFPSNVRGLASAITSVTLTVISFVGLKMYQVITDQWGIHVNYFIYGTG 428
Query: 524 SGINVLFTFFFIFETKGKSFQQIQNILKK 552
++ L + F+ ETKGK+F QIQN + K
Sbjct: 429 CLMSFLLIYRFLPETKGKTFAQIQNEIMK 457
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328703922|ref|XP_001945667.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 238/449 (53%), Gaps = 11/449 (2%)
Query: 110 MGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFE-LDAEKVSWVVATMDL 168
M + A + S+ ++G W WPS AL K E P E L + SW VA+ DL
Sbjct: 1 MSRKRLVYAVITVSVSEVLMGLWAGWPSWALTK--GTEADTPAEWLSRQDHSWAVASFDL 58
Query: 169 GNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGF 228
N++S P+ + + GRK LL V L +S +FA S + +F +R L+G K V +
Sbjct: 59 ANLVSAWPASLLAEYAGRKGCLLAVG-VALVASFGVLFAPSRWAVFAARSLAGFCKAVLY 117
Query: 229 TVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFIT 288
VP ++AEI+ + RG L+ + G+L +L +GP + Y +N VI L F
Sbjct: 118 ASVPGFMAEISADQARGRLNVIVVLSDSLGMLAALSLGPRVPYVIMNGFSMVIGLAFLAA 177
Query: 289 FMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNI--TEELDEIVLTTNENMKNKSGYRE 346
+ +PETP++ ++ + A+ +L W++ +S + L++I+L ++M++ YRE
Sbjct: 178 VIRVPETPHY-LLSKSRMDDARTALRWYRPRSTSTDNNRRLNQIMLAVQDDMRDPGTYRE 236
Query: 347 LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVT 406
L ++ R A+++V+ F QR GV +L+Y++TT+P H G + I+F+V+ +
Sbjct: 237 LFTDDGNRAAVLLVVGACFAQRAGGVGCVLAYSTTTMPTH-GPVRPENVAIVFAVVRLAC 295
Query: 407 NFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYW---NFDYWVSYLFTSLFGITYSL 463
+ PL+D+ GR+ L + S + + A C + D W LF + YS+
Sbjct: 296 SVVAVPLIDLYGRRPLTLGSHLALAAITAAYALCLLYIDDRPDNWGPSACVILFSMAYSM 355
Query: 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAIC 523
G GI+P L+ E+FP NVKS A ++ S+ +L SF+INK Y + FG++ MF + I
Sbjct: 356 GAGIVPGALVGEMFPNNVKSHAVTVVSLVSSLGSFIINKAYLPISDAFGVHIMFFVFCIV 415
Query: 524 SGINVLFTFFFIFETKGKSFQQIQNILKK 552
+ + + F+FETKG S IQ+ L
Sbjct: 416 NAAWAILAYLFLFETKGMSLSAIQDHLDD 444
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357610633|gb|EHJ67072.1| hypothetical protein KGM_07198 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 225/396 (56%), Gaps = 10/396 (2%)
Query: 166 MDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKG 225
M L + LSPIP+ Y+ D+ GRK TLLL+++ ++ +L + A++ ++ SRL+SGIG G
Sbjct: 1 MILSSALSPIPAAYLADRIGRKRTLLLSAIPYIIGWILVMLAKNVGTIYASRLISGIGYG 60
Query: 226 VGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVF 285
+ +T PMY+ EI E+RG ++T+ T GIL C+GPY+ L +P++F
Sbjct: 61 IAYTTAPMYLGEIATNEVRGAMATLITVMSKLGILSQYCIGPYVSMLGLASFNIAVPILF 120
Query: 286 FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYR 345
+TF +PE+PY+ IK + A+KSL+ +G++ I+EELD + +ENMK+KS ++
Sbjct: 121 VVTFTAMPESPYY-FIKTGDTNRAEKSLKNLRGRNY-ISEELDSMSHLVHENMKDKSRWK 178
Query: 346 ELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVV 405
+L+ RK LII+ F Q+ G + I+SYA G +G E I+ + ++
Sbjct: 179 DLIIVGGNRKGLIILSGIYFTQQFCGSTAIISYAQQIFGAAEGGLGAKESCILLGTVQLL 238
Query: 406 TNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYW---NFDYWVSYLF-----TSLF 457
T+ S LVD GRK L ++S+ I++ A FY N +Y VS F +F
Sbjct: 239 TSAISSQLVDRLGRKPLLLVSSCGVGLANIIIGAYFYMKHVNSEYVVSLRFIPVVVIPIF 298
Query: 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF 517
+Y++G+ +P + SE+FPTN+KS A I I AL +F++ K Y++ + G + F
Sbjct: 299 IFSYTIGLATVPFAITSEIFPTNIKSKATCIIQILVALMTFIVTKLYQVTADHLGHHVAF 358
Query: 518 AFYAICSGINVLFTFFFIFETKGKSFQQIQNILKKK 553
+ + S V+F + ETKG+SF IQ L K
Sbjct: 359 WCFGLLSVGGVIFILILLPETKGQSFAAIQEKLYKN 394
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322790606|gb|EFZ15414.1| hypothetical protein SINV_12233 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 242/447 (54%), Gaps = 12/447 (2%)
Query: 114 KQAIAAFSASLPIFIVGCWLTW--PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNI 171
K +AA + +L + +G +L W PS+ L Y P L+ E+ SWV + + LG
Sbjct: 3 KLYLAAVAGNLGMLSIGMFLGWGSPSLPLLV-NGDNYGYPVRLNKEEASWVASLLTLGAS 61
Query: 172 LSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231
+ S ++++ GRKNT+L T + LL FA SS+ L+ SRL SG+G G+ +T+
Sbjct: 62 AGCVISAFMVNVIGRKNTMLFTVVPSAIGWLLIAFATSSWELYISRLTSGLGMGIAYTIT 121
Query: 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMF 291
PMY+ EI+ +RG L ++ T + G +GP++ L ++ P +F ITF++
Sbjct: 122 PMYLGEISPANVRGILGSLLTVAVKFGTSIEFMIGPFLSVSNLALVSLAGPFLFVITFIW 181
Query: 292 IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNY 351
+PE+PY H+I+ + + A SL +GK +++ +E D I + ++ N++G+REL+
Sbjct: 182 LPESPY-HLIRCDAKQKAINSLVQLRGK-EDVYKEADSIEQSVKADLANEAGFRELLFLP 239
Query: 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACS 411
R+ALI +L Q+LSG +L YA + + +G + +I +++V C
Sbjct: 240 GNRRALITLLCLGLAQQLSGSQAVLQYAQSIFDQANGKLEGKYLTMILGAVMLVCAVVCM 299
Query: 412 PLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY-------WVSYLFTSLFGITYSLG 464
+ D +GRK L +SA S+ ++A F+ +++ W+ L+ I Y+LG
Sbjct: 300 MITDCSGRKFLLTISAIGSACSTAMVATYFHLQYNHVDTSNIVWLPATGVILYVIMYALG 359
Query: 465 IGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524
+ +P T+ SELFPTNVK+ I + +F++ K Y ++ + G++ F + CS
Sbjct: 360 LAALPFTMASELFPTNVKALGNMIGIMTCHFTAFVVTKLYPVISDSAGVHTPFWIFTACS 419
Query: 525 GINVLFTFFFIFETKGKSFQQIQNILK 551
+ +FT ++ ETKGK+ +QIQ L
Sbjct: 420 LASAVFTLLYVPETKGKTLEQIQKKLH 446
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91094697|ref|XP_969377.1| PREDICTED: similar to GA11424-PA [Tribolium castaneum] gi|270016516|gb|EFA12962.1| hypothetical protein TcasGA2_TC001413 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 239/446 (53%), Gaps = 14/446 (3%)
Query: 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEY-VLPF--ELDAEKVSWVVATMDLGNILSP 174
+A S +L F+ G + W S L K + +PF +D+++ SW+ + M LG I P
Sbjct: 8 SALSGNLLSFVTGTAIAWSSPTLPKLNDTDVGNIPFGRRIDSDENSWIGSLMPLGAIFGP 67
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
G++ DK GRK TL+ ++ ++ S L FA+ + +R+L+G+ G FTV PMY
Sbjct: 68 FLFGFLADKLGRKVTLMSLAVPYIVSFLTLAFAEVVSLFYFARVLTGLAVGGVFTVFPMY 127
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFI-P 293
I EI + + RGTL ++ + G+LFS CVGPY+ NIIL VIP V+ + F + P
Sbjct: 128 IGEIAENKNRGTLGSVMNIFITSGLLFSYCVGPYVSIMAFNIILAVIPCVYLVLFFLLAP 187
Query: 294 ETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSY 353
E+P++H+ +DN++ AA KSLE + EL +I L+ ++ + G +L ++
Sbjct: 188 ESPHYHVSRDNHE-AASKSLEKIRAPGTKTDAELADIKLSIEKSKEGSVG--DLFASRGL 244
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
KAL I ++ LQ+LSG++ +L YA + II V+ +T+F L
Sbjct: 245 VKALTISVLLIVLQQLSGINVVLFYAQPIFQASGSSLDSEVASIIIGVVQFLTSFVTPML 304
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFD-----YWVSYLFTSLFGITYSLGIG 466
V+ GRK L SA + L FY N D W+ + ++ ITY+ G G
Sbjct: 305 VERLGRKILLYFSAIGMLIAEVPLGLYFYMLNNGDDVEAISWLPVVSLMVYIITYNCGFG 364
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGI 526
+P ++ ELFP +VKS A+S+ + + FLI KF+ + G+ +F +A G+
Sbjct: 365 PLPWAMMGELFPASVKSVASSLTATCGCVIGFLITKFFTSIADAMGMGPLFWLFAGFCGV 424
Query: 527 NVLFTFFFIFETKGKSFQQIQNILKK 552
FT F+ ETKGK+ Q+IQ+IL+
Sbjct: 425 AFFFTLLFVIETKGKNLQEIQDILES 450
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91089779|ref|XP_967531.1| PREDICTED: similar to GA11424-PA [Tribolium castaneum] gi|270013605|gb|EFA10053.1| hypothetical protein TcasGA2_TC012227 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 239/446 (53%), Gaps = 14/446 (3%)
Query: 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEY-VLPF--ELDAEKVSWVVATMDLGNILSP 174
+A S +L F+ G + W S L K + +PF +D+++ SW+ + M LG I P
Sbjct: 8 SALSGNLLSFVTGTAIAWSSPTLPKLNDTDVGNIPFGRRIDSDENSWIGSLMPLGAIFGP 67
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
G++ DK GRK TL+ ++ ++ S L FA+ + +R+L+G+ G FTV PMY
Sbjct: 68 FLFGFLADKLGRKVTLMSLAVPYIVSFLTLAFAEVVGLFYFARVLTGLAVGGVFTVFPMY 127
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFI-P 293
I EI + + RGTL ++ + G+LFS CVGPY+ NIIL VIP V+ + F + P
Sbjct: 128 IGEIAEDKNRGTLGSVMNIFITSGLLFSYCVGPYVSIMAFNIILAVIPCVYLVLFFLLAP 187
Query: 294 ETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSY 353
E+P++H+ +DN++ AA KSLE + EL +I L+ ++ + G +L ++
Sbjct: 188 ESPHYHVSRDNHE-AASKSLEKIRAPGTKTDAELADIKLSIEKSKEGSIG--DLFASRGL 244
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
KAL I ++ LQ+LSG++ +L YA + II V+ +T+F L
Sbjct: 245 VKALTISVLLVVLQQLSGINVVLFYAQPIFQASGSSLDSEVASIIIGVVQFLTSFVTPML 304
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFD-----YWVSYLFTSLFGITYSLGIG 466
V+ GRK L SA + L FY N D W+ + ++ ITY+ G G
Sbjct: 305 VERLGRKILLYFSAIGMLIAEVPLGLYFYMLNNGDDVEAISWLPVVSLMVYIITYNCGFG 364
Query: 467 IIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGI 526
+P ++ ELFP NVKS A+S+ + + FLI KF+ + G+ +F +A G+
Sbjct: 365 PLPWAMMGELFPANVKSVASSLTATCCWVIGFLITKFFTSIADAMGMGPLFWLFAGFCGV 424
Query: 527 NVLFTFFFIFETKGKSFQQIQNILKK 552
FT F+ ETKGK+ Q+IQ+IL+
Sbjct: 425 AFFFTLVFVIETKGKNLQEIQDILES 450
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 567 | ||||||
| FB|FBgn0037387 | 491 | CG1213 [Drosophila melanogaste | 0.763 | 0.881 | 0.302 | 2e-49 | |
| FB|FBgn0036316 | 539 | CG10960 [Drosophila melanogast | 0.781 | 0.821 | 0.295 | 3.3e-47 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.761 | 0.857 | 0.269 | 3.2e-42 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.746 | 0.837 | 0.265 | 4.6e-41 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.774 | 0.874 | 0.242 | 6.8e-40 | |
| FB|FBgn0034247 | 465 | CG6484 [Drosophila melanogaste | 0.761 | 0.929 | 0.255 | 1.1e-39 | |
| FB|FBgn0037386 | 502 | CG1208 [Drosophila melanogaste | 0.689 | 0.778 | 0.277 | 1.4e-39 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.756 | 0.829 | 0.257 | 3.7e-39 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.754 | 0.539 | 0.263 | 3.3e-38 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.753 | 0.529 | 0.265 | 4.4e-38 |
| FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 136/450 (30%), Positives = 213/450 (47%)
Query: 117 IAAFSASLPIFIVGCWLTWPSVA---LYKWQTKEYVLPFELDAEKVSWVVATMDLGNILS 173
+AA +A+L F+VG L W S L T + L + +++ +W+ + + +G +++
Sbjct: 44 MAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGALVA 103
Query: 174 PIPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233
P +G + D+ GRK + A + L+ SRL+ G G G TV PM
Sbjct: 104 PFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVMTVQPM 163
Query: 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIP 293
Y+ EI+ +RG ++ + GGIL+ +GPY+ YQ L V+P+VF + F +P
Sbjct: 164 YVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLVFYMMP 223
Query: 294 ETPYFHIIKDNNQVAAKKSLEWFKGKS-QNITEELDEIVLTTNENMKNKSGYRELVSNYS 352
E+PYF K A K SL++ +G+S + + +E+ EI E M +K +L N
Sbjct: 224 ESPYFFAGKGRKSEALK-SLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAG 282
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH-GLIGRTECLIIFSVLLVVTNFACS 411
R+AL I Q+LSG++ +L + + + GL +II V V + A +
Sbjct: 283 NRRALFICAGLISFQQLSGINVVLFNSQSIFASANTGLDPAIATIIIGCVQ--VGSSALT 340
Query: 412 PLV-DIAGRKTLNMLSAFLSSGVMIVLAACFYWNF---DY----WVSYLFTSLFGITYSL 463
PLV D GRK + + S+ + S + L A FY D W+ ++ I Y
Sbjct: 341 PLVADRLGRKVMLLTSSSVMSIGLAALGAFFYMQLVKGDISSVVWMPVPALIIYNIVYCT 400
Query: 464 GIGIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMFAFYAIC 523
G G +P +L E+FP N+K FY + G YY F +A+C
Sbjct: 401 GFGPLPWAVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSLDA-LGSYYAFWLFAVC 459
Query: 524 SGINVLFTFFFIFETKGKSFQQIQNILKKK 553
+ F F + ETKG S QQIQ+ L K
Sbjct: 460 MVVAFFFVLFVVMETKGLSLQQIQDRLNGK 489
|
|
| FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 134/454 (29%), Positives = 214/454 (47%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA +A+ F G L W S A + + F +D ++ SWV + M LG
Sbjct: 83 QYVAALAAAGGAFAAGTVLGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVC 142
Query: 175 IPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
IP G++++ GRK I+A + L+ SR + GI G PMY
Sbjct: 143 IPIGFLINMIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMY 202
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
EI KEIRGTL + F + GILF VG ++ L+II G++PL+F F F+PE
Sbjct: 203 TGEIAQKEIRGTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFMPE 262
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354
+P + + KD ++ A K S++W +GK + EL E+ T E NK ++ R
Sbjct: 263 SPTYLVSKDRSENAIK-SIQWLRGKEYDYEPELAELRETDRETKANKVNVWAALNRPVTR 321
Query: 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLV 414
KAL I + F Q++ G++ ++ YAS E + I I+ ++ VV F + +V
Sbjct: 322 KALAISMGLMFFQQVCGINAVIFYASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVV 381
Query: 415 DIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFDY-------WVSYLFTSLFGITYSLGI 465
D GR+ L +L++ +S + +++ D W+ LF I +S+G
Sbjct: 382 DKLGRRIL-LLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGY 440
Query: 466 GIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMFAFYAICSG 525
G +P ++ ELF T++K K + + G+ F +A +
Sbjct: 441 GPVPWLMMGELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTV 500
Query: 526 INVLFTFFFIFETKGKSFQQIQNILKKKTATTQS 559
+ V+F +F + ETKGKS +IQ L +T Q+
Sbjct: 501 VGVIFVYFAVPETKGKSLNEIQQELAGNRSTPQA 534
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 120/445 (26%), Positives = 198/445 (44%)
Query: 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNI 171
YT Q +AA + S+ +VG + S AL Q + F++ ++ SWV M L +
Sbjct: 41 YT-QILAAIAVSMGSMVVGFASAYTSPALVSMQNTT-ITSFKVTEQEASWVGGIMPLAGL 98
Query: 172 LSPIPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVV 231
I G ++ GRKN FA S + + R LSG G+ +
Sbjct: 99 AGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSL 158
Query: 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMF 291
P+Y+ E E+RGTL + T GIL G Y+ + L I ++P+ F + +
Sbjct: 159 PVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLL 218
Query: 292 IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS--GYRELVS 349
IPETP + + + + A+K+L+W +GK ++ EL IV + E ++ S +L+
Sbjct: 219 IPETPRWFVTRGREE-RARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFDLMK 277
Query: 350 NYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFA 409
S K L+I L F Q+LSG++ ++ Y + + I C II V+ F
Sbjct: 278 R-SNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFF 336
Query: 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF---DY----WVSYLFTSLFGITYS 462
+ L+D GRK L +S ++ L FY+ D W+ ++ I +S
Sbjct: 337 ATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFS 396
Query: 463 LGIGIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMFAFYAI 522
G+G IP +L E+ P ++ K + + G + F F+ +
Sbjct: 397 SGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGV 456
Query: 523 CSGINVLFTFFFIFETKGKSFQQIQ 547
I + F FF+ ET+GKS ++I+
Sbjct: 457 ICLIGLFFVIFFVPETQGKSLEEIE 481
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 118/444 (26%), Positives = 208/444 (46%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AAF+ S+ VG + S A+ T L ++ E+++WV M L ++
Sbjct: 51 QLLAAFAVSVGSMNVGFSSGYTSPAVL---TMNITL--DITKEEITWVGGLMPLAALVGG 105
Query: 175 IPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRK A + +F R++ G+ G+ P+Y
Sbjct: 106 IVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVY 165
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
I E E+RG L + T GIL + VG Y+ + L IP+ FF+ + PE
Sbjct: 166 IGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPE 225
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK-SGYRELVSNYSY 353
TP +++ K Q A+KSL W +GK+ NI +E+ ++ ++ E+ + + +++L S Y
Sbjct: 226 TPRWYVSKARVQ-EARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGGNAFKQLFSK-RY 283
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
A++I L Q+L+G++ ++ YA++ + II V+ ++ F + L
Sbjct: 284 LPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATML 343
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY-------WVSYLFTSLFGITYSLGIG 466
+D GRK L +S+ ++ L A FY ++ W+ ++ + +S+G G
Sbjct: 344 IDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFG 403
Query: 467 IIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNK-FYKIVQINF--GLYYMFAFYAIC 523
IP +L E+ P+ ++ K F I+ + G ++FA IC
Sbjct: 404 PIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFA--VIC 461
Query: 524 SGINVLFTFFFIFETKGKSFQQIQ 547
G +LF FF+ ETKGKS ++I+
Sbjct: 462 IG-GLLFVIFFVPETKGKSLEEIE 484
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/450 (24%), Positives = 199/450 (44%)
Query: 106 RRQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVAT 165
+R M YT Q +AA + S+ ++G ++ S AL + FE+ + W+ +
Sbjct: 33 KRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNT-TATFEVTMDMAMWIGSI 91
Query: 166 MDLGNILSPIPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKG 225
M L ++ I G ++ GR+N A + + R + G G
Sbjct: 92 MPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGFCVG 151
Query: 226 VGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVF 285
V +P+Y+ E E+RG+L + T GIL G Y+ ++ L ++ IP++F
Sbjct: 152 VASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIF 211
Query: 286 FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEI--VLTTNENMKNKSG 343
I IPETP ++I K + A+KSL+W +GK+ +I+EELD I + +E + +
Sbjct: 212 LILMFLIPETPRWYISKGKIK-EARKSLQWLRGKTADISEELDSIQKMHIESERIATEGA 270
Query: 344 YRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLL 403
EL ++ K + I L F Q+ SG++ ++ Y + + II ++
Sbjct: 271 LIELFRK-NHIKPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDENLSTIIVGLVN 329
Query: 404 VVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN--FDY----WVSYLFTSLF 457
++ F + ++D GRK L +S+ L + FY D W+ + ++
Sbjct: 330 FISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFFYVKELMDVTAFGWIPLMSLIVY 389
Query: 458 GITYSLGIGIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMF 517
I +S G G IP ++ E+ P ++ K Y+ + ++ G Y F
Sbjct: 390 VIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTF 449
Query: 518 AFYAICSGINVLFTFFFIFETKGKSFQQIQ 547
+ + +F + ET+G+S ++I+
Sbjct: 450 WLFGTLVAVAFIFVIICVPETRGRSLEEIE 479
|
|
| FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 114/447 (25%), Positives = 204/447 (45%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPS-VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILS 173
Q IA SAS +G + W S V EY P + + + WV + + LG +
Sbjct: 9 QYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFP--ISSSQFGWVSSLLTLGATVI 66
Query: 174 PIPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233
IP G+ +D GR+ +FA++ L+ R + G+ G PM
Sbjct: 67 CIPIGFAIDWIGRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAFCVTAPM 126
Query: 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIP 293
Y EIT +RGT+ + F + G+L+ VG ++ T+NI+ ++P++F I F+P
Sbjct: 127 YCTEITATALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMP 186
Query: 294 ETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS-GYRELVSNYS 352
E+P + +K N AAK +L+W +GK +I +EL EI+ + + + +
Sbjct: 187 ESPVYLAMKGRNDDAAK-ALQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLRRPI 245
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L I ++ Q+ +G++ +L Y+++ + I ++ +I V V +
Sbjct: 246 VLKGLGIAVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQVTSTLVAVA 305
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYW---------NFDYWVSYLFTSLFGITYSL 463
++D AGR+ L ++S L + ++ F NF W+ +F I +S+
Sbjct: 306 IIDKAGRRILLLISGVLMAVSTALMGVYFQLKENDPASMDNFG-WLPISSICIFIIFFSI 364
Query: 464 GIGIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMFAFYAIC 523
G G +P +++ELF +VK + I++ + G F +
Sbjct: 365 GFGPVPWLVMAELFSEDVKSVAGSIAGTSNWLSAFVVTLLFPILKSSIGPGPTFWIFTAI 424
Query: 524 SGINVLFTFFFIFETKGKSFQQIQNIL 550
+ I ++ FF+ ETKGK+ +IQ++L
Sbjct: 425 AVIAFFYSLFFVPETKGKTIIEIQDLL 451
|
|
| FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 112/403 (27%), Positives = 193/403 (47%)
Query: 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLF 214
D++K + V + + G + +PSGYI D+ GR+ FA S WL+
Sbjct: 102 DSQK-TLVGSMLPFGALFGALPSGYIADRIGRRYTAMVMDIPFILAWITLSFANSVGWLY 160
Query: 215 TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTL 274
R L GI G V PMYI+EI + IRG+L T+F L GILF VG + ++TL
Sbjct: 161 LGRFLIGIATGSFCVVAPMYISEIAETSIRGSLGTLFQLLLTIGILFIYVVGALVSWKTL 220
Query: 275 NIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTT 334
+++ +IP++ + +PETP + ++K+ + A ++L+W G N + + I
Sbjct: 221 SLLCLIIPILLLVGLFIVPETPVY-LLKNGKRSEANRALKWLWGDYCNTSNAIQAIQNDL 279
Query: 335 NENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTE 394
++ + S ++L SN + R ++I ++ Q+ SG++ ++ + + E +
Sbjct: 280 DQTGVDAS-VKDLFSNRASRNGMVISVLLMVFQQFSGINAVIFFMNEIF-ESSSTLNPNV 337
Query: 395 CLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN--FDY----- 447
C I+ V+ V+ A S L++ AGRK L + S+ + + + +L A N D
Sbjct: 338 CTIVVGVVQVIMTLASSLLIEKAGRKILLIFSSTIMTVCLAMLGAYNTINRHTDLSQSIG 397
Query: 448 WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIV 507
W+ L LF +++S+G G IP ++ ELF +VK + ++
Sbjct: 398 WLPLLCIVLFIVSFSVGYGPIPWMMMGELFMPDVKGIAVSLSVMMNWVCVSLVTWLFGVL 457
Query: 508 QINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550
G F F++ G+ + + ETKGKS QIQ+ L
Sbjct: 458 NAG-GADVPFWFFSAWMGVATAYVAIALQETKGKSASQIQSWL 499
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 114/443 (25%), Positives = 195/443 (44%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L ++
Sbjct: 56 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLVGG 114
Query: 175 IPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKN A + R LSG GV +P+Y
Sbjct: 115 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 174
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F I IPE
Sbjct: 175 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPE 234
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTN--ENMKNKSGYRELVSNYS 352
TP +++ + + A+K+L+W +GK ++ EL I+ + E ++S +L+ +
Sbjct: 235 TPRWYVSRGRDD-RARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKKTN 293
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L+I L F Q+LSG++ ++ Y + I C II V+ + F +
Sbjct: 294 L-KPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATL 352
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFY-----WNFDY--WVSYLFTSLFGITYSLGI 465
L+D GRK L +S ++ L FY + + W+ +F + +SLG
Sbjct: 353 LIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGF 412
Query: 466 GIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQINFGLYYMF-AFYAICS 524
G IP ++ E+ P ++ K + + + G + F F ++C
Sbjct: 413 GPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCV 472
Query: 525 GINVLFTFFFIFETKGKSFQQIQ 547
+ ++F ++ ET+GKS + I+
Sbjct: 473 -VGLVFVIMYVPETQGKSLEDIE 494
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 3.3e-38, P = 3.3e-38
Identities = 117/444 (26%), Positives = 195/444 (43%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L +
Sbjct: 332 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLAGG 390
Query: 175 IPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKN A + R LSG+ G+ +P+Y
Sbjct: 391 ILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVY 450
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F + IPE
Sbjct: 451 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPE 510
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYREL-VSNYSY 353
TP +++ + N + A+K+L+W +G+ ++ EL I + + ++ S L + N +
Sbjct: 511 TPRWYVSR-NREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKAN 569
Query: 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPL 413
K L+I L F Q+LSG++ ++ Y I C II V+ + F + L
Sbjct: 570 LKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVL 629
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFDY-----WVSYLFTSLFGITYSLGIG 466
+D GRK L +S ++ L FY N D W+ +F + +SLG G
Sbjct: 630 IDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFG 689
Query: 467 IIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNKFYKIVQI---NFGLYYMFAFYAIC 523
IP ++ E+ P ++ K + + N G ++MF +IC
Sbjct: 690 PIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFG--SIC 747
Query: 524 SGINVLFTFFFIFETKGKSFQQIQ 547
+ +LF ++ ET+GKS + I+
Sbjct: 748 I-VGLLFVIVYVPETQGKSLEDIE 770
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 4.4e-38, P = 4.4e-38
Identities = 118/445 (26%), Positives = 194/445 (43%)
Query: 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSP 174
Q +AA S SL +VG + S AL + + + FE+ + SWV M L +
Sbjct: 345 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRN-ITSFEVTDQSGSWVGGIMPLAGLAGG 403
Query: 175 IPSGYIMDKFGRKNXXXXXXXXXXXXXXXXIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
I G +++ GRKN A + R LSG GV +P+Y
Sbjct: 404 ILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVY 463
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ E E+RGTL + T GIL G Y+ + L + +P+ F + IPE
Sbjct: 464 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPE 523
Query: 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTN--ENMKNKSGYRELVSNYS 352
TP +++ + + A+K+L+W +GK ++ EL I+ + E ++S +L+ +
Sbjct: 524 TPRWYVSRGRDD-RARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKAN 582
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSP 412
K L+I L F Q+LSG++ ++ Y + I C II V+ + F +
Sbjct: 583 L-KPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATM 641
Query: 413 LVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF---DY----WVSYLFTSLFGITYSLGI 465
L+D GRK L +S ++ L FY D W+ ++ + +SLG
Sbjct: 642 LIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGF 701
Query: 466 GIIPTTLLSELFPTNVKXXXXXXXXXXXXXXXXXXNK-FYKIVQI--NFGLYYMFAFYAI 522
G IP ++ E+ P ++ K F I+ G ++MF +I
Sbjct: 702 GPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFG--SI 759
Query: 523 CSGINVLFTFFFIFETKGKSFQQIQ 547
C I + F F++ ET+GKS + I+
Sbjct: 760 CV-IGLAFVIFYVPETQGKSLEDIE 783
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 567 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-59 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-52 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-30 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-16 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-15 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-12 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-09 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-08 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 6e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 8e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-04 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 0.002 | |
| PRK14995 | 495 | PRK14995, PRK14995, methyl viologen resistance pro | 0.003 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 4e-59
Identities = 114/419 (27%), Positives = 208/419 (49%), Gaps = 18/419 (4%)
Query: 146 KEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205
+ +V+ +G ++ + +G + D+FGRK +LL+ +++F+ +LL
Sbjct: 35 LTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQG 94
Query: 206 FAQSSYW--LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL 263
FA+ + L R++ G+G G +VPMYI+EI K++RG L +++ + GIL +
Sbjct: 95 FAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAA 154
Query: 264 CVGP-------YIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWF 316
+G ++ + V ++ I +F+PE+P + ++K + A+ L
Sbjct: 155 IIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE-EARAVLAKL 213
Query: 317 KGKSQNITEELDEIVLTTNENMK-NKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTI 375
+G ++ +E+ E + +++ K+ + EL + R+ L++ ++ Q+L+G++ I
Sbjct: 214 RG-VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAI 272
Query: 376 LSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435
Y S T+ E GL II V+ V F LVD GR+ L +L A + +
Sbjct: 273 FYY-SPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFL 331
Query: 436 VLAACFYWNFDY-WVSYL---FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491
VL + F LF ++LG G +P ++SELFP V+ A +IA+
Sbjct: 332 VLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATA 391
Query: 492 AFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550
A LA+FLI + I+ G Y+F +A + +LF FFF+ ETKG++ ++I +
Sbjct: 392 ANWLANFLIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 3e-52
Identities = 106/413 (25%), Positives = 195/413 (47%), Gaps = 31/413 (7%)
Query: 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI---FAQSSYWLFTS 216
VV+ +G + + +G++ D+FGRK +LL+ +L+F+ ++L FA S L
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 217 RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY-------I 269
R+L GIG G+ +VPMY++EI K +RG L++++ + GIL + G +
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 270 QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDE 329
++ + + + F+ F+PE+P + + K A+KSL +G S E LDE
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDE 252
Query: 330 -----IVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTL- 383
I + + S S R+ L + +V + Q+ +G++ I+ Y+ T
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 384 ----PEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAA 439
H + II + F LVD GR+ L ++ A + + VL
Sbjct: 313 NAGVSTDHAFLVS----IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368
Query: 440 CFY---WNFDYWVSYL---FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF 493
+ F LF +++G G +P ++SE+FP +++ SIA A
Sbjct: 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428
Query: 494 ALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQI 546
LA+F++ + + + G+ +F F+ + + ++F +FF+ ETKG++ ++I
Sbjct: 429 WLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-30
Identities = 110/447 (24%), Positives = 198/447 (44%), Gaps = 60/447 (13%)
Query: 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS 209
L + + VA+ +G I+ GY ++FGR+++L + +++F S+L
Sbjct: 48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL------G 101
Query: 210 SYW---LFTS---------------RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMF 251
S W FTS R++ GIG G+ + PMYIAEI IRG L +
Sbjct: 102 SAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN 161
Query: 252 TGHLYGGILFSLCVGPYIQYQTLNIIL-----------GVIPLVFFITF-MFIPETPYFH 299
+ G L V +I L IP + F+ F+PETP +
Sbjct: 162 QFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL 221
Query: 300 IIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALII 359
+ + + A+ L G + T+ L EI + + K+G + L + +I+
Sbjct: 222 MSRGKQE-QAEGILRKIMGNTLA-TQALQEIKHSLDH--GRKTGGKLL----MFGVGVIV 273
Query: 360 V-LVTSFLQRLSGVSTILSYASTTLPEHHGLIG-RTECLIIFSVLLVVTNFACSPL---- 413
+ ++ S Q+ G++ +L YA PE +G T+ ++ ++++ V N + L
Sbjct: 274 IGVMLSVFQQFVGINVVLYYA----PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMT 329
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLL 473
VD GRK L ++ A + M L FY V+ L + +++ G + LL
Sbjct: 330 VDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 389
Query: 474 SELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY----YMFA--FYAICSGIN 527
SE+FP ++ A +IA A +A++ ++ + ++ N L F+ Y +
Sbjct: 390 SEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449
Query: 528 VLFTFFFIFETKGKSFQQIQNILKKKT 554
LF + F+ ETKGK+ ++++ + + +T
Sbjct: 450 ALFMWKFVPETKGKTLEEMEALWEPET 476
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 6e-18
Identities = 63/354 (17%), Positives = 121/354 (34%), Gaps = 42/354 (11%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
+ ++ ++ LG L+ +G + D+FGR+ LL+ L+F LL +FA S +
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269
L R+L G+G G F IA+ E RG + + G +G +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 270 --QYQTLNIILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326
++ +IL ++ L+ + + +P P + A + +K
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK--------- 197
Query: 327 LDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH 386
+ ++ L+ + L +L+Y
Sbjct: 198 -------------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 387 H-GLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF 445
+ L + +L + L D GR+ +L+ L + LA
Sbjct: 233 GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLAL-LSLTE 291
Query: 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL 499
+ L G L + L+S+L P + +A+ + + A +L L
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 7e-16
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
L A + +V+ LG L + +GY+ D+FGR+ LLL L+F SLL FA S +
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW 88
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269
L R L G+G G + IAE + RG +F+ G L +G +
Sbjct: 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 270 --QYQTLNIILGVIPLVFFITFMFIP 293
++ L +IL ++ L+ + +F+
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 89/382 (23%), Positives = 160/382 (41%), Gaps = 29/382 (7%)
Query: 168 LGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVG 227
+G +L GY+ D+FGRK LLL++LV S +LT F+ + RLL G+G G G
Sbjct: 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG-G 196
Query: 228 FTVVPM-YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQ-YQTLNIILGVIPLVF 285
V + E K+ R + T+ G++ V +I ++ L + + + +F
Sbjct: 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLF 256
Query: 286 FITFMFIPETPYFHIIKDNNQVAAK--KSLEWFKGKSQNITEELDEIVLTTNENM-KNKS 342
F+ F+PE+P + I + + A K + + GK E+ + L + + K +
Sbjct: 257 FLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPA--EVLSLSLEKDLSSSKKQY 314
Query: 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVL 402
+ +L + RK + +++ F +T SY L G +G L +F
Sbjct: 315 SFLDLFRTPNLRKTTLCLMMLWF-------TTAFSYYG--LVLDLGNLGGNIYLDLFISG 365
Query: 403 LV--VTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV--SYLFTSLFG 458
LV L+D GR+ S L+ +++L Y++ + FG
Sbjct: 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--VDLYFLRTALAVLGKFG 423
Query: 459 ITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFA 518
IT + + + T +EL+PT V++ + S + S + + + L
Sbjct: 424 ITSAFQMVYLYT---AELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPL--V 478
Query: 519 FYAICSGINVLFTFFFIFETKG 540
+ + + + T F ETKG
Sbjct: 479 LFGGLALLAGILTLFLP-ETKG 499
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 69/356 (19%), Positives = 132/356 (37%), Gaps = 34/356 (9%)
Query: 149 VLPFELDAEKVSWVVATMDLGNILS---------PIPSGYIMDKFGRKNTLLLTSLVFLT 199
+ F A W + + LG + S + G + D+ GR+ LL + L+F
Sbjct: 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSV 94
Query: 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGG 258
+LL A + L R L+G+G G + ++E K RGT + MF G+ G
Sbjct: 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA 154
Query: 259 I---LFSLCVGPYIQYQTLNIILGVIPLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLE 314
+ + P +++L + G+ PL+ + F+PE+ F + K V +
Sbjct: 155 AVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVN-- 212
Query: 315 WFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVST 374
Q E + +S ++ L + R +++ L+ L L GV
Sbjct: 213 --AIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFML--LVGVYF 268
Query: 375 ILSY-----ASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL 429
+ ++ G +F+ V+ + L D G + L
Sbjct: 269 LTNWLPKLMVELGFSLSLAATG----GALFNFGGVIGSIIFGWLADRLGPRV--TALLLL 322
Query: 430 SSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA 485
V VL ++ + L ++ G + G + L++ +PT ++++
Sbjct: 323 LGAVFAVLVGSTLFSPT--LLLLLGAIAGFFVNGGQSGLY-ALMALFYPTAIRATG 375
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLL 219
++A LG ++ SG + D+FGRK LL+ +F+ S+ + + + L +R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 220 SGIGKGVGFTVVPMYIAEITDKEIR----GTLSTMFTGHLYGGILFSLCVGPYIQYQTLN 275
G G IA+I E R G +S G + ++ ++
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 276 IILGVIPLVFFIT-FMFIPET 295
+ L ++ L FI +PET
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 7/185 (3%)
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGR--TECLIIFSVLLVVTNFAC 410
+ L+++ + FL G +L+Y L E GL L +F + ++
Sbjct: 173 LLRLLLLLALAFFLL-SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 411 SPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPT 470
L D GR+ L +L L + + + + L G + T
Sbjct: 232 GLLSDRLGRRRLLLLIGLL---LAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288
Query: 471 TLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530
L SEL P + +A+ + + +L L ++ G +F A + + L
Sbjct: 289 -LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Query: 531 TFFFI 535
Sbjct: 348 LLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 9e-09
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 116 AIAAFSASLPIFIVGCWLTW-----PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGN 170
+A L ++ L + L + L A + +++ LG
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGG 224
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI-FAQSSYWLFTSRLLSGIGKGVGFT 229
IL + G + D+ GR+ LLL L+ LL + A S L + LL G G G F
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284
Query: 230 VVPMYIAEITDKEIRGTLSTMFTGHLY-GGILFSLCVGP---YIQYQTLNIILGVIPLVF 285
+ +E+ E RGT S +F GG L L G Y + +IL + L+
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 286 FITFMFIP 293
+ + +P
Sbjct: 345 ALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
F LD ++ W + LG + + G + D+ GRK L+++ +F SL T A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIA---EITDKEIRGT-LSTMFTGHLYGGILFSL--CV 265
L +RLL+G+G G +P IA E +RGT +S M+ G +GG L S+ +
Sbjct: 105 SLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
Query: 266 GPY-IQYQTLNIILGVIPL-VFFITFMFIPETPYF 298
++ + + GV PL + + ++PE+ F
Sbjct: 162 AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAF 196
|
Length = 406 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 75/402 (18%), Positives = 138/402 (34%), Gaps = 88/402 (21%)
Query: 164 ATMDLGNILSPIPS---GYIMDKFGRKNTLLLTSLVFLTSS----LLTIFAQSSYW---- 212
AT G + P+ + G+ D+ GRK TL++T L+ + LL +A W
Sbjct: 39 ATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL 98
Query: 213 LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQ 272
L +RL+ G G + +Y+AE RG + G+L + + Y
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 273 T---------------LNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFK 317
++ +L +I L + ETP F ++ ++ E
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRN---LEETPVFEKAQEKHKKKRGPIAETLT 215
Query: 318 GKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILS 377
+ +L G + Y L+T++L +
Sbjct: 216 KHRK-------PFLLGL--------GLVIATTTTFY-------LITTYLP---------T 244
Query: 378 YASTTL--PEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435
Y + TL + L+ LI+F + + ++ L D GR+ + ++
Sbjct: 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGA----LSDRIGRRPVLII--------FT 292
Query: 436 VLAACFYWNF--------DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVK----S 483
VLAA + + + + + G + + L ELFPT V+ S
Sbjct: 293 VLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGAS 351
Query: 484 SAASIASIAFA-LASFLINKFYKIVQINFGLYYMFAFYAICS 524
A ++A F A ++ + + + Y A A+
Sbjct: 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIG 393
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 91/454 (20%), Positives = 176/454 (38%), Gaps = 80/454 (17%)
Query: 162 VVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS------YWLFT 215
V + +G + + G++ DK GRK + ++ + +++ + + S L
Sbjct: 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCF 120
Query: 216 SRLLSGIGKGVGFTVVPMYIAEITDKEIRGTL-STMFT----GHLYGGILFSLCVG---- 266
R G+G G + + + +E K+ RG + + +F G L G I+ + +
Sbjct: 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH 180
Query: 267 --PYIQY-------------QTLNIILGVIPLVFFITFMF---IPETP-YFHIIKDNNQV 307
I++G + + F IPETP Y + + +
Sbjct: 181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQ 240
Query: 308 AAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTS--- 364
AA + K + E DE+ + K+ + + +++ + +L T+
Sbjct: 241 AASDMSAVLQVKIEA---EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSW 297
Query: 365 FLQRLS--GVS----TIL-----SYASTTLPEHHGL--IGRTECLIIFSVLLV---VTNF 408
FL ++ GV+ IL S + T + L +I + + VT F
Sbjct: 298 FLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF 357
Query: 409 ACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGIT-YSLGIGI 467
LVDI GRK + ++ F+ + + VL +++ ++ F +++ + + G
Sbjct: 358 ----LVDIIGRKPIQLMGFFILTVLFFVLGFA----YNHLSTHGFLAIYVLAQFFANFGP 409
Query: 468 IPTTLL--SELFPTNVKS-----SAAS------IASIAFALASFLINKFYKIVQINFGLY 514
TT + E+FPT +S SAAS I F + K +
Sbjct: 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA-QHGDPTKGYPTGIWMG 468
Query: 515 YMFAFYAICSGINVLFTFFFIFETKGKSFQQIQN 548
++ +A+ + +LFT I ETKGKS +++
Sbjct: 469 HVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 29/212 (13%)
Query: 104 HYRRQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVV 163
H R Q + +A + + +F+VG L PS K+ +P D+ K +
Sbjct: 161 HGRFQWALFFVLGLALMADGVEVFVVGFVL--PSAE------KDLCIP---DSGK-GMLG 208
Query: 164 ATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIG 223
+ LG ++ G + DK GRK LL+ V + + F Q + RLLSG G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 224 KGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGGIL-------------FSLCVGPYI 269
G +V Y AE +E RG LS + + GGI +S +G
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328
Query: 270 QYQTLN--IILGVIPLVFFI-TFMFIPETPYF 298
Q+ + +I+ P VF I F+PE+P F
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 77/398 (19%), Positives = 148/398 (37%), Gaps = 50/398 (12%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
L A + +V + G ++ P G+++D+FG + TL + +++ + L FA +
Sbjct: 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLY-GGILFSLCVGPYIQ 270
L+ R+L G + F + + +A R T ++F GGI+ VG +
Sbjct: 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143
Query: 271 ---YQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326
+Q II GV+ +++ + FIP+ P K++ +TEE
Sbjct: 144 HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---------------------KAKWLTEE 182
Query: 327 LDEIVL-TTNENMKNKSGYRELVSNYSYRKAL----IIVLVTSFLQRLSGVSTILSYAST 381
IV+ + K Y ++ L + L G+ L++ T
Sbjct: 183 EKYIVVGGLLAEQQGKGPST--PKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240
Query: 382 TLPEHHGLIGRTECLIIFSVLLVVTNFAC---SPLVDIAGRKTLNMLSAFLSSGVMIVLA 438
L + GL E + S+ +V L D+ R+ +++ A ++ + ++
Sbjct: 241 YLVQERGL-SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299
Query: 439 ACFYWNFDYWVS-YLFTSLFGITY-SLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA 496
+ + +Y Y +L + + LG G I L+S+ P N+ + + L
Sbjct: 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359
Query: 497 SFLINKFYKIVQINFGL----YYMFAFYAICSGINVLF 530
+ I G FA + L
Sbjct: 360 GI-------VGPIVIGAIAATTGSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 398 IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLF 457
FS+ + + L D GR+ + +L L + ++LA W+ + L
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----SSLWLLLVGRFLL 97
Query: 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF 517
G+ L++E FP + A + S F L + L ++ + G ++F
Sbjct: 98 GLGGGALYPAAA-ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 518 AFYAICSGINVLFTFFFI 535
AI + L F +
Sbjct: 157 LILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 60/347 (17%), Positives = 113/347 (32%), Gaps = 56/347 (16%)
Query: 161 WVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLS 220
++ LG L + + R+ LL +F+ S+LL+ A S L +R L+
Sbjct: 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111
Query: 221 GIGKGVGFTVVPMYIAEITDKEIRG-TLSTMFTGHLYGGILFSLCVGPYI-QY----QTL 274
G+ GV +++ A + RG L+ +FTG L + + +G ++ Q T
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTG-LTLATVLGVPLGTFLGQLFGWRATF 170
Query: 275 NIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTT 334
I + L + + +P + +
Sbjct: 171 LAIAVLALLALLLLWKLLP---------PSEISGSLPG---------------------- 199
Query: 335 NENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGR-- 392
L+ L+ + ++G + +Y L G
Sbjct: 200 -----PLRTLLRLLRRPGVLLGLLATFLF-----MTGHFALYTYIRPFLESVAGFSVSAV 249
Query: 393 TECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYL 452
+ L+ F + + N L D R+ L + + L A + ++
Sbjct: 250 SLVLLAFGIAGFIGNLLGGRLADRGPRRAL----IAALLLLALALLALTFTGASPALALA 305
Query: 453 FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL 499
L+G +S + + T L+ L P + A S+ AF L L
Sbjct: 306 LLFLWGFAFSPALQGL-QTRLARLAP-DAADLAGSLNVAAFNLGIAL 350
|
Length = 394 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 119 AFSASLPIFIVG--CWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIP 176
S F + W + +A+ + L ++ +VA L + I
Sbjct: 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLRII 56
Query: 177 SGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYW-LFTSRLLSGIGKGVGFTVVPMYI 235
G+++DKFG + T L+ L+ L A SY L RL GI G F +I
Sbjct: 57 LGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWI 115
Query: 236 AEITDKEIRGT 246
+ K+I+GT
Sbjct: 116 SFFFPKKIQGT 126
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 148 YVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSL---LT 204
Y L A ++ L + + G + D+ GR+ LLL L+ + ++L L
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL 287
Query: 205 IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFS 262
+SS WL + LL G G G+ F + ++++ KE RGT S ++ G
Sbjct: 288 SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 111 GYTKQAIAAFSASLPIFIVG--CWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDL 168
+ A S F VG W + + ++ F L + +VA L
Sbjct: 7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVF------IKSDFGLSEGQKGLLVAIPIL 60
Query: 169 GNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS--SYWLF-TSRLLSGIGKG 225
L +P G++ D+FG + +L+ L+ L L FA + S W LL G+
Sbjct: 61 VGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120
Query: 226 VGFTVVPMYIAEITDKEIRGT 246
F V + KE +G
Sbjct: 121 S-FAVGMPNASFFFPKEKQGL 140
|
Length = 417 |
| >gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
+P G + D+ G K L+L +F +SL F+ ++ WL +R L IG + +VP
Sbjct: 59 LPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAM---IVPAT 115
Query: 235 IAEI 238
+A I
Sbjct: 116 LAGI 119
|
Length = 495 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 65/334 (19%), Positives = 127/334 (38%), Gaps = 38/334 (11%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAE 237
G D++GR+ ++ + ++F +L FA +F +RL+ GIG G + Y+ E
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE 127
Query: 238 ITDKEIRGTLSTMF-TGHLYGGIL---FSLCVGPY--IQYQTLNIILGVIPLVFFITFMF 291
K +R S + +G+ G ++ V P ++ L + ++P++F +
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL-FFISILPIIFALWLRK 186
Query: 292 -IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350
IPE + + + G+ + + IV+T M +G R
Sbjct: 187 NIPEAEDWKEKHAGKALVRTMVDILYGGEHR-----IANIVMTLAAAMVQSAGKRWPTFV 241
Query: 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNF-- 408
Y L+++++ + L + +Y L GL T + ++V +N
Sbjct: 242 Y-----LVVLVLFANLYSHPIQDLLPTYLKADL----GLSPHT-----VANIVVFSNIGA 287
Query: 409 ACSPLV-----DIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSL 463
V D GR+ + + L+ ++I+ F + V L +
Sbjct: 288 IVGGCVFGFLGDWLGRR-KAYVCSLLAGQLLIIPV--FAIGANVAVLGLGLFFQQMLVQG 344
Query: 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALAS 497
GI+P L E FPT+ +++ L
Sbjct: 345 IWGILP-KHLGEYFPTDQRAAGLGFTYQLGNLGG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.98 | |
| KOG2532|consensus | 466 | 99.98 | ||
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.98 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| KOG1330|consensus | 493 | 99.97 | ||
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| KOG2533|consensus | 495 | 99.97 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| KOG3764|consensus | 464 | 99.95 | ||
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| KOG2504|consensus | 509 | 99.95 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| KOG2615|consensus | 451 | 99.93 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| KOG2563|consensus | 480 | 99.86 | ||
| KOG4686|consensus | 459 | 99.86 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.83 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.82 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.81 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.8 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| KOG3626|consensus | 735 | 99.73 | ||
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.7 | |
| KOG2325|consensus | 488 | 99.7 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.64 | |
| KOG2816|consensus | 463 | 99.56 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.53 | |
| KOG0569|consensus | 485 | 99.42 | ||
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.42 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.42 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.41 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.38 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.38 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.37 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.37 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.36 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.33 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.31 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.29 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.28 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.28 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.28 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.27 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.27 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.27 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.26 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.26 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.25 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.24 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.23 | |
| KOG3762|consensus | 618 | 99.23 | ||
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.22 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.22 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| KOG3098|consensus | 461 | 99.21 | ||
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.21 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.2 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.2 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.2 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.19 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.19 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.19 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.19 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.17 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.17 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.13 | |
| KOG1330|consensus | 493 | 99.13 | ||
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.12 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.08 | |
| KOG0253|consensus | 528 | 99.08 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.07 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.07 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.05 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.04 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.03 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.03 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.01 | |
| KOG2615|consensus | 451 | 99.0 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.99 | |
| KOG3764|consensus | 464 | 98.99 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.99 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.93 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.91 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.9 | |
| KOG2504|consensus | 509 | 98.9 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.88 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.88 | |
| KOG0637|consensus | 498 | 98.88 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.82 | |
| KOG2532|consensus | 466 | 98.82 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.82 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.82 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.81 | |
| KOG4332|consensus | 454 | 98.8 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.8 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.8 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.71 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| KOG0255|consensus | 521 | 98.66 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.65 | |
| KOG0254|consensus | 513 | 98.61 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.61 | |
| KOG2533|consensus | 495 | 98.58 | ||
| KOG3810|consensus | 433 | 98.56 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.52 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.51 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.51 | |
| KOG0252|consensus | 538 | 98.5 | ||
| KOG4686|consensus | 459 | 98.42 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.42 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.4 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.39 | |
| KOG3762|consensus | 618 | 98.38 | ||
| KOG3574|consensus | 510 | 98.37 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.33 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.28 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.26 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.24 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.24 | |
| KOG2816|consensus | 463 | 98.22 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.19 | |
| KOG2325|consensus | 488 | 98.15 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.14 | |
| KOG1237|consensus | 571 | 98.12 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.94 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.88 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.72 | |
| KOG1479|consensus | 406 | 97.7 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.59 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.46 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.45 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.44 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.33 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.33 | |
| KOG2563|consensus | 480 | 97.22 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 97.09 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.9 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.87 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.43 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.43 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.42 | |
| KOG3098|consensus | 461 | 96.4 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.27 | |
| KOG3097|consensus | 390 | 95.97 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.86 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.5 | |
| KOG3626|consensus | 735 | 94.98 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.51 | |
| KOG0637|consensus | 498 | 94.32 | ||
| KOG3880|consensus | 409 | 94.3 | ||
| KOG1479|consensus | 406 | 93.77 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 93.52 | |
| KOG1237|consensus | 571 | 91.1 | ||
| KOG2601|consensus | 503 | 90.43 | ||
| KOG3880|consensus | 409 | 89.29 | ||
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.33 | |
| KOG4332|consensus | 454 | 87.39 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 84.4 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 83.63 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.49 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=352.62 Aligned_cols=440 Identities=25% Similarity=0.417 Sum_probs=371.9
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhc---ccCCCcc--CChhh----HHHHHHHHHHHHHhhhhhhhhhhcc
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTK---EYVLPFE--LDAEK----VSWVVATMDLGNILSPIPSGYIMDK 183 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~dr 183 (567)
++.....++..++.+-.||..+.+++..+.+.+- .+.+.+| .++.+ .+.+.+++.+|.++|+++.|+++||
T Consensus 7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~ 86 (485)
T KOG0569|consen 7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR 86 (485)
T ss_pred HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666667788999999988876655432 2333355 44433 3667889999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHH
Q psy3209 184 FGRKNTLLLTSLVFLTSSLLTIFA---QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGIL 260 (567)
Q Consensus 184 ~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 260 (567)
+|||..++++.++..++.++..++ +++.+++++|++.|+..|......+.++.|..|++.||....+.+.+..+|.+
T Consensus 87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l 166 (485)
T KOG0569|consen 87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL 166 (485)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence 999999999999888888777664 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh--h----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHH--H
Q psy3209 261 FSLCVGPY--I----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV--L 332 (567)
Q Consensus 261 i~~~l~~~--l----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 332 (567)
++..++.- + .|++.+.+..+++++.++...++||||||+..+|+++++|++.+++.++.+++..+..+... +
T Consensus 167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 99666533 2 69999999999999999999999999999966699999999999999998864333222222 2
Q ss_pred HhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHH
Q psy3209 333 TTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACS 411 (567)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g 411 (567)
..+.++.++.+++++++++..++...+.+.+.+.+++++.+.+.+|...++.+.+.. ..+.......+...++..+++.
T Consensus 247 ~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~ 326 (485)
T KOG0569|consen 247 EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSP 326 (485)
T ss_pred HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233367789999999999999999999999999999999999999999998876 5567888888999999999999
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHH
Q psy3209 412 PLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY-----WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAA 486 (567)
Q Consensus 412 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 486 (567)
+++||+|||++++.+..++.+..+++.......... +..+.+.+++.++++.+.+|+.|-+.+|++|++.|+.+.
T Consensus 327 ~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~ 406 (485)
T KOG0569|consen 327 FLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQ 406 (485)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHH
Confidence 999999999999999999988888777654333222 234566777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhC
Q psy3209 487 SIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILKKK 553 (567)
Q Consensus 487 g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (567)
++..++.++..++....+..+.+..|. ..|..+.+.++++.++.++.+||||+|+..|+.++.+++
T Consensus 407 s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 407 SVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999999999998 688999999999999999999999999999998888776
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=366.84 Aligned_cols=416 Identities=17% Similarity=0.139 Sum_probs=321.8
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
.+.+|.++++++++.+..+++...++.++|.+..+ ++++..+.+++.++++++.+++++++|+++||+|||++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-----~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li 236 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-----LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL 236 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 35677778888889999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 269 (567)
++++++++++++++++++++.++++|+++|++.|+..++..+++.|++|+++|++.++++.+++.+|.++++.++..+
T Consensus 237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888755332
Q ss_pred ---------------hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcc----hHHHH--H
Q psy3209 270 ---------------QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQN----ITEEL--D 328 (567)
Q Consensus 270 ---------------~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~ 328 (567)
+||+.+++.++++++.++.++++||||+|+ ..+++.+++.+.++++...+.. ..... +
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~ 395 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF-LENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHH
Confidence 599999998888777777788899999999 8889999999999988765431 11110 0
Q ss_pred HHHHHhhh------hhcc------------------cccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh
Q psy3209 329 EIVLTTNE------NMKN------------------KSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLP 384 (567)
Q Consensus 329 ~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (567)
........ +... ..+++++++. .++++++++..+++...+ +++++..|+|.++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~ 473 (742)
T TIGR01299 396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-EVREITIKLMGVWFTLSF-GYYGLSVWFPDMIK 473 (742)
T ss_pred HHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc-cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 10000000 0000 0134555554 566666666666655544 68889999998753
Q ss_pred hc---c---------------------------------------C----------------------------------
Q psy3209 385 EH---H---------------------------------------G---------------------------------- 388 (567)
Q Consensus 385 ~~---~---------------------------------------~---------------------------------- 388 (567)
.. . .
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 553 (742)
T TIGR01299 474 HLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFID 553 (742)
T ss_pred HHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhh
Confidence 31 0 0
Q ss_pred ------------------------------------C----chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 389 ------------------------------------L----IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 389 ------------------------------------~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
. ........+.+++.+++.+++|+++||+|||+++.++.+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~ 633 (742)
T TIGR01299 554 TLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMV 633 (742)
T ss_pred hhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0 001122445567889999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
+.+++++++.+.. +....+++.++++++.+. ..+..+++++|++|++.|++++|+.+....+|++++|++++.+.
T Consensus 634 lsai~~ll~~~~~----s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 634 LSCISCFFLSFGN----SESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777665421 223333334444544443 33445689999999999999999999999999999999999887
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy3209 509 INFGLYYMFAFYAICSGINVLFTFFFIFETKGKS 542 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (567)
+. +...+|++.+++.++++++. +++||++++.
T Consensus 709 ~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 709 GI-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 65 44567777777776665554 4568888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=341.52 Aligned_cols=434 Identities=23% Similarity=0.320 Sum_probs=321.8
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcc---cCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKE---YVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTL 190 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 190 (567)
....+.+.+.++.+.++++.+++++..|.+.++. ...+++.+..+.+++.+++.++..++++++|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3455566677889999999999999999988871 1223488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHH
Q psy3209 191 LLTSLVFLTSSLLTIFA------------QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGG 258 (567)
Q Consensus 191 ~~~~~~~~i~~~~~~~~------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 258 (567)
+++.++++++.++++++ +.++.++++|+++|++.|+..+...++++|++|+++|++++++.+.+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999999888873 235678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHH
Q psy3209 259 ILFSLCVGPY------------IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326 (567)
Q Consensus 259 ~~i~~~l~~~------------l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (567)
.+++++++.. .+||+.|++.+++.++..+..+++||+|+++ ..+++.+++++..++..+.+. ....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~ 246 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL-MSRGKQEQAEGILRKIMGNTL-ATQA 246 (479)
T ss_pred HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHcCCHHHHHHHHHHHcCChh-HHHH
Confidence 9988776543 2799999998888877666677899999988 667777777666666544332 1111
Q ss_pred HHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHH
Q psy3209 327 LDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVV 405 (567)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (567)
.++......++.. ..+..+. .........+....+.+..+++...++.|.++.+.+.. ..........++..++
T Consensus 247 ~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGRK---TGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhhh---hhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 1111111100000 0111111 01111222223333444445566677788887766544 3344556667788899
Q ss_pred HHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHH
Q psy3209 406 TNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA 485 (567)
Q Consensus 406 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 485 (567)
+.+++++++||+|||++++.+.++..++.+++................+++++++++..+.+..+.++.|.+|++.|+++
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 401 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 401 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHH
Confidence 99999999999999999999998888887776543221222223334445555555555667777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhCC
Q psy3209 486 ASIASIAFALASFLINKFYKIVQ------INFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILKKKT 554 (567)
Q Consensus 486 ~g~~~~~~~~g~~i~~~i~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (567)
.|+.+.+.+++.++++.+++.+. +..++...|++++++++++.++.+++.+|+|+++.+|.+++.++..
T Consensus 402 ~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 99999999999999988776554 4677778888888888888777777889999998888776665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=346.93 Aligned_cols=429 Identities=18% Similarity=0.165 Sum_probs=307.9
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
.+.++.+++++.++.+.++++.+.++.++|.+..+....+.+.+..+.+++.+.+.++..++++++|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34666677888889999999999999999988765222223556778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHh
Q psy3209 192 LTSLVFLTSSLLTIFAQS------SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCV 265 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l 265 (567)
++++++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+.+..+|.++++.+
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 78999999999999999999999999999999999999999999999988888776
Q ss_pred hhhh---------------------------hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcH-HHHHHHHHHhc
Q psy3209 266 GPYI---------------------------QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQ-VAAKKSLEWFK 317 (567)
Q Consensus 266 ~~~l---------------------------~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~-~~~~~~~~~~~ 317 (567)
+..+ +||+.|.+.++++++.++..+++||||+|+ ..++++ +++.+.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l-~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT-ADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHhCcchHHHHHHHHHHh
Confidence 5421 599999988888877777778899999999 555444 45666665554
Q ss_pred CCCcc-hHHHHHHHHHHhhhhhcccccHHHHhcch---hhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCch-h
Q psy3209 318 GKSQN-ITEELDEIVLTTNENMKNKSGYRELVSNY---SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIG-R 392 (567)
Q Consensus 318 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 392 (567)
..+.+ ..++.++.. ++++..+.+++++++++ +.++..+......+. ....++....|.|.++++.+.... .
T Consensus 250 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~~ 325 (502)
T TIGR00887 250 QVKIEAEPDEVEKAS---TAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPAA 325 (502)
T ss_pred ccccccCcccccchh---ccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCcc
Confidence 32211 111111110 01111123577777642 222222222222222 222345666778888876654311 1
Q ss_pred H------------HHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy3209 393 T------------ECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGIT 460 (567)
Q Consensus 393 ~------------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (567)
. .......++.+++.+++++++||+|||++++.+..+.+++++++.......... ......+++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 404 (502)
T TIGR00887 326 TNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTH-GFLAIYVLAQFF 404 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHH
Confidence 0 122334456677889999999999999998888877777666555422111111 111222222233
Q ss_pred hhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchhhhHHHHHHHHHHHH
Q psy3209 461 YSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF----------GLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 461 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~----------g~~~~~~~~~~~~~~~~~~ 530 (567)
++.+..++.+.+.+|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.. +....+.+++++++++.++
T Consensus 405 ~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999999999999999999999998742 3445677788777776554
Q ss_pred HHHhccCCCCCCHHHHH
Q psy3209 531 TFFFIFETKGKSFQQIQ 547 (567)
Q Consensus 531 ~~~~~~~~~~~~~~~~~ 547 (567)
+++.||+++++++|++
T Consensus 485 -~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 485 -TLLIPETKGKSLEELS 500 (502)
T ss_pred -heEeccCCCCCHHhhh
Confidence 4677999998876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=330.84 Aligned_cols=441 Identities=26% Similarity=0.436 Sum_probs=361.9
Q ss_pred HHHHHHHHHhhhhHHHhhhh--ccchhhhhhhhhhcccCCCccCCh--hhHHHHHHHHHHHHHhhhhhhhhhhcccchhH
Q psy3209 113 TKQAIAAFSASLPIFIVGCW--LTWPSVALYKWQTKEYVLPFELDA--EKVSWVVATMDLGNILSPIPSGYIMDKFGRKN 188 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 188 (567)
...........++.+..+++ .+..+++.+.+.++.-..+...+. .+.+|+.+.+.++..++++++|+++|++|||+
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445555666777777776 677778888777751111122222 45699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 189 TLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
.++++.+++.++.+++++++|+++++++|+++|+|.|+...+.+.+++|+.|++.||...++.+....+|..++..++..
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCC-CcchHHHHHHHHHHhhhh---hc
Q psy3209 269 I-----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGK-SQNITEELDEIVLTTNEN---MK 339 (567)
Q Consensus 269 l-----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~ 339 (567)
. +||..+.+..+++++..+..+++||+|+|+ .++++.+++++.+.++++. +.+...+.+........+ ..
T Consensus 201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 7 699999999999988766688999999999 8899999999999999983 343444444333111111 11
Q ss_pred ccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy3209 340 NKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGR 419 (567)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 419 (567)
.+..++++++ +..+++.++.+.+..++++++++...+|.+.+++..+...+........++..+++.+++..+.||+||
T Consensus 280 ~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 280 GKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred ccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223566666 578888999999999999999999999999999988865333666777788899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHH
Q psy3209 420 KTLNMLSAFLSSGVMIVLAACFYWNF--------DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491 (567)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 491 (567)
|++++.+...+.++.++++....... ..+..++..+++...++.++.++.|.+.+|.+|.+.|+.+.++...
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~ 438 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVA 438 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHH
Confidence 99999999999999988877544321 2456667777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHHHhhCCC
Q psy3209 492 AFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVL-FTFFFIFETKGKSFQQIQNILKKKTA 555 (567)
Q Consensus 492 ~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (567)
+.++...+....+..+.+..+....|..+++++.+..+ +.+++.||+|+++.+++++...++..
T Consensus 439 ~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 439 VNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 99999988888777777665544577777777777777 78889999999999999887766543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=323.34 Aligned_cols=426 Identities=26% Similarity=0.398 Sum_probs=317.2
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCC--------hhhHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELD--------AEKVSWVVATMDLGNILSPIPSGYIMDK 183 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr 183 (567)
.++.+...+++.++.+..+++...+++.+|.+..+ ++.+ ..+.+++.+++.++.+++++++|+++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 97 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFE-----FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR 97 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHH-----HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 45555666667778888899999999999988888 6555 8999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHH
Q psy3209 184 FGRKNTLLLTSLVFLTSSLLTIFAQ---SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGIL 260 (567)
Q Consensus 184 ~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 260 (567)
+|||++++++.++++++.+++.++. +++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|.+
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL 177 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999996654 4558999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh---hh----hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHH---HH
Q psy3209 261 FSLCVG---PY----IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELD---EI 330 (567)
Q Consensus 261 i~~~l~---~~----l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 330 (567)
+++.++ .. .+||+.|++.++..++.++..+++||+|++. ..+++.++..+..++....+.......+ ..
T Consensus 178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWL-VGKGRVEEARKSLARLRGTSGEDKELLDELELI 256 (481)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHH-HHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 999998 43 3899999997777666667777899999877 5555555555554444333221111111 00
Q ss_pred HHHh-hhhhcccccHHHHhcchh-hhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHH
Q psy3209 331 VLTT-NENMKNKSGYRELVSNYS-YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTN 407 (567)
Q Consensus 331 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 407 (567)
.... .+....+..+.+.++..+ ...+.++...+..+........+..+.|.++.+.+.. ...+.......++.+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (481)
T TIGR00879 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFT 336 (481)
T ss_pred HHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence 0000 001111122344443211 2233444444444444444556677778877766554 344566677788889999
Q ss_pred hhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhccccchhhhhcccCCChhh
Q psy3209 408 FACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD------YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNV 481 (567)
Q Consensus 408 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 481 (567)
++++++.||++||+.+..+.++..++.+++......... .+..+...+++..+++.+..+..+.+..|.+|++.
T Consensus 337 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (481)
T TIGR00879 337 FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416 (481)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence 999999999999999888877777776665532211111 33334444555556666666776678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCH
Q psy3209 482 KSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSF 543 (567)
Q Consensus 482 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (567)
|+++.|+.+...++|++++|.+.+.+.+..|+...|++.+++++++.++.+++.+|+++++.
T Consensus 417 ~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 99999999999999999999999999999999999999998888888887777777776554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=298.23 Aligned_cols=401 Identities=14% Similarity=0.114 Sum_probs=312.3
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
++.|+.+.+.+.+++...++.+-..+.+.|.+.++ .++|.+|.|++.+++.+.|+++-.+.|.++||.+.|..+.
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-----~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~ 98 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-----GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence 45566778888899999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhh--hhh
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVG--PYI 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~--~~l 269 (567)
+++++.++.+++++++++++.+.++-++.|+..|.-+|.+...++.|+|++|||+..++++.+.++|..+.+++. +.+
T Consensus 99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888777 554
Q ss_pred ----hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccH
Q psy3209 270 ----QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGY 344 (567)
Q Consensus 270 ----~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (567)
+||..|++.++++++ .++.++.++|+|+-. .-...++- +++.. +...++++.+..+.
T Consensus 179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~--GLP~ie~~-------~~d~~---------e~~~~~~~~~~ls~ 240 (448)
T COG2271 179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE--GLPPIEEY-------RGDPL---------EIYEEEKENEGLTA 240 (448)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc--CCCCHHHh-------hcCch---------hhhhhhccCCCccH
Confidence 899999999999987 456666788988532 00001100 00000 00011111122566
Q ss_pred HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhh--cch
Q psy3209 345 RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIA--GRK 420 (567)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~ 420 (567)
++++....++++.++.+++..+..+..=+++..|.|.|+.+..+. .++......+=.++++|.+++|+++||+ |||
T Consensus 241 ~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR 320 (448)
T COG2271 241 WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR 320 (448)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc
Confidence 666666666667778888887777778899999999999987765 5667788888899999999999999997 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHH-HHHH
Q psy3209 421 TLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFAL-ASFL 499 (567)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i 499 (567)
.+..+.+.+.....++..+ ..++.+.+...+++++.|+.... -..+.-..+.|..|++..|++.|+...+.++ |...
T Consensus 321 ~p~~~i~~~~i~~~~~~~w-~~~~~~~~l~~~~l~~iGf~IyG-PqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~ 398 (448)
T COG2271 321 GPMALIFMLLITASLVLYW-LAPNGSYLLDAILLFIIGFLIYG-PQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL 398 (448)
T ss_pred chHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHhh-HHHHHHHHHhccccHhhccchhchhhhHHHHhhHHh
Confidence 5554444333333333322 22222334444444444443221 2222236688999999999999999999999 8888
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 500 INKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 500 ~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
+....|.+.|..||...|.++.+.++++.++.....+.
T Consensus 399 a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 399 AGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred cCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999988888887776555543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=287.93 Aligned_cols=369 Identities=17% Similarity=0.198 Sum_probs=294.5
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
+..++...++.|..+........++|++.+| +|+|..+.|++.|+|.++.+++.++...+.||+.||++++..+.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-----l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD-----LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 3446667788899999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q psy3209 196 VFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QY 271 (567)
Q Consensus 196 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 271 (567)
++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++ ||
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999998888888877776665 89
Q ss_pred HHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcc
Q psy3209 272 QTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 272 r~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
|+.|++.+.++++ .+..+..+| |+.. .+.+.....+..+++++
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~----------------------------------~~~~~~~~~~~~~~l~~ 210 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEI----------------------------------SGSLPGPLRTLLRLLRR 210 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccC----------------------------------CCCCCcchhHHHHHhcC
Confidence 9999999999987 556667788 2100 00001111234556666
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
|..+. ..+..+..+.+.+..++|...++++..+. ....+....++++.++|+.++|++.|| +.|+.+.....
T Consensus 211 p~v~~-----~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~ 284 (394)
T COG2814 211 PGVLL-----GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALL 284 (394)
T ss_pred chHHH-----HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHH
Confidence 54443 33333334456778888888888887764 456688889999999999999999999 88888887777
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
+..+..+.+.+. ..+.+......+++++.......... ...++.. ++.+..+.+++....++|..+|..++|.+.
T Consensus 285 l~a~~~l~l~~~---~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~ 359 (394)
T COG2814 285 LLALALLALTFT---GASPALALALLFLWGFAFSPALQGLQ-TRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVL 359 (394)
T ss_pred HHHHHHHHHHHh---cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776665552 22444445455555555444333332 4555544 478999999999999999999999999999
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 509 INFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
++.|+....++.+.+.+++.++.....+
T Consensus 360 ~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 360 DALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888888888887777655443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=310.25 Aligned_cols=390 Identities=16% Similarity=0.130 Sum_probs=269.6
Q ss_pred HHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhh-HHH-----HHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEK-VSW-----VVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
..+.+.++.+++++|..+++...|.+.++ |+.+.++ .++ +.++.++++.++++++|+++||+|||+++.
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKV-----FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45566788999999999999999999888 7543322 122 257888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHH
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYW--------LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL 263 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~--------l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~ 263 (567)
+++++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|.++++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 889999999999999999999999999999999999999988888887776
Q ss_pred Hhhh------------hhhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy3209 264 CVGP------------YIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV 331 (567)
Q Consensus 264 ~l~~------------~l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (567)
.+.. ..|||+.|++.++++++.+++..++||+|+|. ..+++.++.. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~-~~~~~~~~~~----------~---------- 230 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ-QHVDKLEQGD----------R---------- 230 (490)
T ss_pred HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH-HHHHhhhhhc----------c----------
Confidence 5432 23899999998776666555667789999875 2111110000 0
Q ss_pred HHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhh
Q psy3209 332 LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFA 409 (567)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 409 (567)
....+.++.++++++++ .++.........+ .....++.+..|.|.++++..+ . ...........++.+++.++
T Consensus 231 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 305 (490)
T PRK10642 231 --EGLQDGPKVSFKEIATK--HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPV 305 (490)
T ss_pred --ccccccccCCHHHHHHH--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123356666653 2233332222222 2233566778899999866533 2 23344455566778889999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH
Q psy3209 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA 489 (567)
Q Consensus 410 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 489 (567)
.|+++||+|||+.+..+.++..++.+.+..... ..+....++..++.+++.+...... ..+..|.+|++.|+++.|+.
T Consensus 306 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~ 383 (490)
T PRK10642 306 MGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-SNVIGLIFAGLLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAA 383 (490)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHH
Confidence 999999999999887776544433322221111 1122233333344444443333333 36778999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy3209 490 SIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSGINVLFTFFFIFETKGK 541 (567)
Q Consensus 490 ~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (567)
+....+++.++|.+.+++.+..+ +..++++..+.++++.+.. ++.||++++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~ 435 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence 66677888899999999987655 4445555555555544443 455776554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=316.70 Aligned_cols=388 Identities=20% Similarity=0.255 Sum_probs=292.1
Q ss_pred hhhhhhhhcccCCCccCC---hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3209 138 VALYKWQTKEYVLPFELD---AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLF 214 (567)
Q Consensus 138 ~~l~~i~~~~~~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 214 (567)
+..|.+.+| +|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.++
T Consensus 110 ~~~~~i~~e-----~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (505)
T TIGR00898 110 TFSSTIVTE-----WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184 (505)
T ss_pred cccccEEEE-----ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 456778888 9998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhccc
Q psy3209 215 TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-QYQTLNIILGVIPLVFFITFMFIP 293 (567)
Q Consensus 215 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-~wr~~f~~~~~~~~~~~~~~~~lp 293 (567)
++|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++|
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~ 264 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVP 264 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998776 899999999988887666678899
Q ss_pred CCchhHHhhcCcHHHHHHHHHHhcCCCcc-hHHHHHHHH-HHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhh
Q psy3209 294 ETPYFHIIKDNNQVAAKKSLEWFKGKSQN-ITEELDEIV-LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSG 371 (567)
Q Consensus 294 esp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (567)
|+|+|+ ..+++.+++.+.+++....+.. ...+..... .+...+..++.+++++++++.++...+.....++...+ .
T Consensus 265 esp~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 342 (505)
T TIGR00898 265 ESPRWL-ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-S 342 (505)
T ss_pred CChHHH-HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-H
Confidence 999999 7888888887777665443221 111111111 11111112235788999988776665554443333211 1
Q ss_pred HHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 372 VSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
++... .+....+ .+........++..+++.++.+++.||+|||+.+.++.++.+++++++.... ....+...
T Consensus 343 ~~~~~----~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 414 (505)
T TIGR00898 343 YYGLV----LDLGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--VDLYFLRT 414 (505)
T ss_pred HHHHh----ccccccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC--CCchHHHH
Confidence 22222 2222222 2344555566788889999999999999999999988888777766655421 11223333
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+..++.+++.+.. .+..+.+.+|.+|++.|++++|+.+.+..+|++++|.+.+ + +..+...++.+++++.+++.++.
T Consensus 415 ~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 415 ALAVLGKFGITSA-FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333443333 3444689999999999999999999999999999999988 4 44566677888887777776654
Q ss_pred HHhccCCCCCCHH
Q psy3209 532 FFFIFETKGKSFQ 544 (567)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (567)
++++|+++++++
T Consensus 492 -~~lpet~~~~l~ 503 (505)
T TIGR00898 492 -LFLPETKGVPLP 503 (505)
T ss_pred -HcCcCCCCCCCC
Confidence 567888877653
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=308.65 Aligned_cols=393 Identities=12% Similarity=0.019 Sum_probs=273.7
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
..+.+...++++.+...++...++.+.|.+.+| +|++..+.|++.+++.+++++++++.|+++||+|||+++.++
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 100 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-----YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFL 100 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHH
Confidence 345566677777888888999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 194 SLVFLTSSLLTIF-----AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 194 ~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
+++++++.++.++ +++++.++++|+++|++.+...+....++.|++|+++||++++++..+..+|.++++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 101 LILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence 8888888777665 58999999999999999999999999999999999999999999999999999998877653
Q ss_pred h-------hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcc
Q psy3209 269 I-------QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKN 340 (567)
Q Consensus 269 l-------~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (567)
+ +||..|.+.++++++. ++.++++++.|+.. ...+.++ .. ..... .++ + ...+++...
T Consensus 181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~--~~~~~~~---~~---~~~~~--~~~--~--~~~~~~~~~ 246 (467)
T PRK09556 181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL--GWGKAEE---IF---GEPIS--EED--K--ETESTDMTK 246 (467)
T ss_pred HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc--CCCChhh---cc---cCccc--hhh--h--ccccccCcH
Confidence 2 4899888888877764 44445567776421 0001110 00 00000 000 0 000000000
Q ss_pred cccH-HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy3209 341 KSGY-RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIA 417 (567)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 417 (567)
...+ +..++++.++ ...+..++.....+....|.|.|+++..+. .+.+.......++.+++.+++|+++||+
T Consensus 247 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~ 321 (467)
T PRK09556 247 WQIFVEYVLKNPVIW-----LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA 321 (467)
T ss_pred HHHHHHHHHcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 2245554333 223333333334556788999999775443 3455666677788999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHH-H
Q psy3209 418 GRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFAL-A 496 (567)
Q Consensus 418 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g 496 (567)
++|+.+.....+..++..++.. . ...+.+...+..++++++.. +..........|.+|++.+|++.|+.+..+++ |
T Consensus 322 g~r~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g 398 (467)
T PRK09556 322 NGRRALVACIALALIIFTLGVY-Q-HATSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFG 398 (467)
T ss_pred CCCchHHHHHHHHHHHHHHHHH-H-hcCcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Confidence 9988766544433332222222 1 11223233333333443221 11112125667999999999999999999997 7
Q ss_pred HHHHHHHHHHHHH------------hhccchhhhHHHHHHHHHHHHHHH
Q psy3209 497 SFLINKFYKIVQI------------NFGLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 497 ~~i~~~i~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
++++|.+.|.+.+ ..||...|++++++.+++.++...
T Consensus 399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 567888888887777776655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=299.40 Aligned_cols=395 Identities=13% Similarity=0.043 Sum_probs=274.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
+.++.+.....++.+...++....+..+|.+.++ +|++..+.+++.+.+.+++++++++.|+++||+|||+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~ 93 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLAD-----LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGI 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHH
Confidence 3344455556677777788888888999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 193 TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
+.++.+++.++++++++++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|.++++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 94 GLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999998877765
Q ss_pred -hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHH-
Q psy3209 270 -QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRE- 346 (567)
Q Consensus 270 -~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 346 (567)
+||+.|++.+++.++. ++.++++||+|++. ..+...+...+ . .+. .++.+..+.+.++
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~--------~---~~~-------~~~~~~~~~~~~~~ 234 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM-GLPSVGEWRHD--------A---LEL-------AQQQEGAGLSRKEI 234 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc-CCCCccccccc--------c---ccc-------chhccccCCChhhh
Confidence 8999999988877653 44555678887532 00000000000 0 000 0000001112222
Q ss_pred ----HhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh--c
Q psy3209 347 ----LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIA--G 418 (567)
Q Consensus 347 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g 418 (567)
.++++..+ .+.+..+........+..|.|.++.+. +.+ .+.+.......++.++++++.|++.||+ +
T Consensus 235 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 309 (434)
T PRK11663 235 LTKYVLLNPYIW-----LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG 309 (434)
T ss_pred HHHHHhcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence 33333222 222222222334456677889998654 333 4455667777888999999999999998 3
Q ss_pred chHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHH
Q psy3209 419 RKTLN-MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALAS 497 (567)
Q Consensus 419 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 497 (567)
+|+.. ........+....+.... ..+........+.++++. .+..........|.+|++.|+++.|+.++..++|+
T Consensus 310 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 386 (434)
T PRK11663 310 NRGPMNLIFAAGILLSVGSLWLMP--FASYVMQAACFFTIGFFV-FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA 386 (434)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHHH-hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH
Confidence 33322 222111121221111111 112222222222222221 11122223567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 498 FLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 498 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
+++|.+.|.+.+..|+...|.+.+++++++++..+...++++
T Consensus 387 ~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 387 ALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999998998888888777766655544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=295.33 Aligned_cols=373 Identities=16% Similarity=0.129 Sum_probs=251.5
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCcc---CChhhHHHH---HHHHHHHHHhhhhhhhhhhcccchh
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFE---LDAEKVSWV---VATMDLGNILSPIPSGYIMDKFGRK 187 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~---~s~~~~~~~---~s~~~~~~~~~~~~~g~l~dr~Grr 187 (567)
+++..+..++++.+.+++|...++.+.|.+.++ ++ .+..+.+.. .+..+++..++++++|+++||+|||
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr 93 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHI-----FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRK 93 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 344456666788889999999999999999888 63 455544444 4444555559999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH
Q psy3209 188 NTLLLTSLVFLTSSLLTIFAQSSY--------WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI 259 (567)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 259 (567)
+++.+++++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|+++.++.+.+...|.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~ 173 (432)
T PRK10406 94 KSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQ 173 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999998864 588999999999999999999999999999999999999888888887
Q ss_pred HHHHHhhh------------hhhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHH
Q psy3209 260 LFSLCVGP------------YIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEEL 327 (567)
Q Consensus 260 ~i~~~l~~------------~l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (567)
++++.+.. ..|||+.|++.++++++.++....+||+|++. . +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~-~------~------------------- 227 (432)
T PRK10406 174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE-T------R------------------- 227 (432)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH-H------h-------------------
Confidence 77765432 23899999998888777665666678876422 0 0
Q ss_pred HHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHH
Q psy3209 328 DEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVV 405 (567)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 405 (567)
+.++..++++++++++.+. ... ...+.....++.+..|.|.++.+..+. .+.+.......+...+
T Consensus 228 ---------~~~~~~~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i 294 (432)
T PRK10406 228 ---------ALKEAGSLKGLWRNRRAFI---MVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFML 294 (432)
T ss_pred ---------hhcccccHHHHHhhHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0001224666776543321 111 112222234566778999998765333 2334555555666778
Q ss_pred HHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHH
Q psy3209 406 TNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA 485 (567)
Q Consensus 406 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 485 (567)
+.++.|+++||++||+.+..+.++..+....+........+....+....+..+..+. ..+..+.+.+|.+|++.|+++
T Consensus 295 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~ 373 (432)
T PRK10406 295 IQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALG 373 (432)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchh
Confidence 8888999999999998877665544333322211111111222222122212122222 223345788999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhccc-hhhhHHHHHHHHHHHHHH
Q psy3209 486 ASIASIAFAL-ASFLINKFYKIVQINFGLY-YMFAFYAICSGINVLFTF 532 (567)
Q Consensus 486 ~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 532 (567)
.|+.+.++++ .+...|.+.+.+ +..|.+ ..+++.++..+++.+..+
T Consensus 374 ~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 374 VGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999887665 345577777744 555643 344445555555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=297.80 Aligned_cols=389 Identities=14% Similarity=0.101 Sum_probs=272.0
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
.+|.+.+.++++.++++++....+.+.|.+.+| +|++..+.+++.+++.+++++++++.|+++||+|||+++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~ 79 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKD-----LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI 79 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-----cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence 345567777778888999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy3209 194 SLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---- 269 (567)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 269 (567)
+++++++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999989999999999999999999999999999998887643
Q ss_pred ------hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccc
Q psy3209 270 ------QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS 342 (567)
Q Consensus 270 ------~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (567)
|||+.|++.++++++ ..+.++++||+|+.. +.-.+++.+...+..+....+.++..... .+.+...+.
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 234 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPEGAF---AHAAMPQRS 234 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccccccccccc---ccccccHHH
Confidence 899999998888876 455666789998421 00011111111111111100000000000 000000011
Q ss_pred cHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhcc-C-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy3209 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH-G-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGR 419 (567)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 419 (567)
.+++++ ++. ++...+.+++....++.+..|.|.++++.+ + . ...+.......++.+++.++.|+++||+++
T Consensus 235 ~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~ 308 (412)
T TIGR02332 235 MLREIF-TPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKE 308 (412)
T ss_pred HHHHhc-ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCc
Confidence 223333 222 223333334444456778889999998742 2 2 344566777888899999999999999997
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHH
Q psy3209 420 KTLN-MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASF 498 (567)
Q Consensus 420 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 498 (567)
|+.. ....++..++. ++.. ... +....+..+++.+.+... ..+..+....|.+|++.|++++|+.+..+++|++
T Consensus 309 r~~~~~~~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~ 383 (412)
T TIGR02332 309 RKHHTALPYLFAAAGW-LLAS--ATD-HNLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSA 383 (412)
T ss_pred cHHHHHHHHHHHHHHH-HHHH--hcC-CHHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhh
Confidence 7643 33333333322 2221 111 122222222222222221 1233335567889999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-cchhhhHHHHH
Q psy3209 499 LINKFYKIVQINFG-LYYMFAFYAIC 523 (567)
Q Consensus 499 i~~~i~g~l~~~~g-~~~~~~~~~~~ 523 (567)
++|.+.|.+.+..| |...+++.+++
T Consensus 384 ~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 384 LSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999875 66666655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=266.48 Aligned_cols=415 Identities=17% Similarity=0.128 Sum_probs=316.5
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
.+.+|...+....+.....+.....+-+.|.+... +|.+..+..++....+.|..+++..+|.++|++|||+.+.
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~-----w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~ 147 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEV-----WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFN 147 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhh
Confidence 34555666666677777777777777778888887 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 269 (567)
++....++..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.++...+....
T Consensus 148 ~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~ 225 (528)
T KOG0253|consen 148 LTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS 225 (528)
T ss_pred hhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 899889999999999999888777 88999988887776554
Q ss_pred --hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcc----------hH--HHHHH--HHH-
Q psy3209 270 --QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQN----------IT--EELDE--IVL- 332 (567)
Q Consensus 270 --~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~--~~~- 332 (567)
||||.......+..+.+.+.+++|||||+. ..++++.++.+.++++...|.. .. .|.++ ..+
T Consensus 226 ~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~ 304 (528)
T KOG0253|consen 226 NFGWRYLLFTSSTPLMFAARFLVWVYESPRFY-LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS 304 (528)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHhhcccCcchh-hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh
Confidence 999999988877777788888999999999 8899999999888887664432 00 00011 000
Q ss_pred HhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhcc--------------------CC-ch
Q psy3209 333 TTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH--------------------GL-IG 391 (567)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-~~ 391 (567)
..+..++......+++. |.++++.+.....++...++.+. ........++... .. ..
T Consensus 305 ~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg-~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~ 382 (528)
T KOG0253|consen 305 KSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYG-SVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAK 382 (528)
T ss_pred hhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhccCccccchhcchhHHHhhhcCCccchh
Confidence 01112333455667766 46777777777777766554333 3323333333221 01 12
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhh
Q psy3209 392 RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTT 471 (567)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (567)
.+.-.++..+..++|.++.++++||+|||+.+....+++++..+++.... ......+..+..-++.+.++... |.
T Consensus 383 dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~----~rn~~tvllf~arafisg~fqva-Yv 457 (528)
T KOG0253|consen 383 DYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK----TRNAYTVLLFTARAFISGAFQVA-YV 457 (528)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHhchheEE-EE
Confidence 23445667788999999999999999999999999888888777655522 22223333444444445555555 69
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCH
Q psy3209 472 LLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSF 543 (567)
Q Consensus 472 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (567)
|..|++|+..|+++.|.+..+..+|+++.|.++ +........+..+++++++++.+..+++-.|+|+|+.
T Consensus 458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999999997 4444556677888888889988888888889988763
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=290.61 Aligned_cols=369 Identities=15% Similarity=0.162 Sum_probs=271.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
+++|...+.+.++.+..........+.+|.+.++ +|.++.+.+++.+.+.+++.+++++.|+++||+|||+++..
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 79 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQS-----FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIG 79 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3344444444455555444444566778999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 193 TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
+.++++++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~ 159 (390)
T PRK03545 80 LFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY 159 (390)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999998888765
Q ss_pred -hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHH
Q psy3209 270 -QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYREL 347 (567)
Q Consensus 270 -~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (567)
|||+.|++.++++++. .+.+.++||.|+. ++ ....+.++.
T Consensus 160 ~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~ 201 (390)
T PRK03545 160 LGWRTTFLAIGGGALITLLLLIKLLPLLPSE----HS----------------------------------GSLKSLPLL 201 (390)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Cc----------------------------------chHHHHHHH
Confidence 8999999998887764 3444456765320 00 000123456
Q ss_pred hcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHH
Q psy3209 348 VSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNML 425 (567)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 425 (567)
++++.++......++.. ...+....+.+.++.+..+ + ...+......+++.+++.++.+++.||+++|... .
T Consensus 202 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~ 275 (390)
T PRK03545 202 FRRPALVSLYLLTVVVV-----TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I 275 (390)
T ss_pred HhCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence 66654443222221111 1223344566666666433 3 3455666777888999999999999999987643 4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 426 SAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYK 505 (567)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g 505 (567)
+..+..++...+... ..+.+..++..++.+++... ..+.......+..| +.++++.|+.+...++|..+||.+.|
T Consensus 276 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 276 AIALLLVCLLLLLPA---ANSEWHLSVLSIFWGIAIMC-IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHHHhc-chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333332221 12334444455555555433 33333467777776 67899999999999999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHHhc
Q psy3209 506 IVQINFGLYYMFAFYAICSGINVLFTFFFI 535 (567)
Q Consensus 506 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (567)
.+.++.|++..+++.+++.+++.++.+...
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 351 QVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999888888777765554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=354.69 Aligned_cols=425 Identities=27% Similarity=0.444 Sum_probs=333.6
Q ss_pred hhhhHHHhhhhccchhhhhhhhhhcc--cCCCcc----CChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYKWQTKE--YVLPFE----LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
..++.+..+++...++...+...... ...+.. .+..+.+++.+...+|..+|++++|+++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 44566888888888877766555220 000011 123467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 196 VFLTSSLLTIFAQ---SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 196 ~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
+..+++++.++++ |++.++++|+++|++.|+..+....++.|..|+++|++..++.+.++.+|.+++..++..+
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999998888776544
Q ss_pred -h---hHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHH
Q psy3209 270 -Q---YQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYR 345 (567)
Q Consensus 270 -~---wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (567)
+ ||+.+++.++++++.++..+++||||+|+ ..+++.+++++.++++++.+.. +++.++...+.++..+.+.+++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKEIE-DEEIEEIKAEKKESQESKASWR 242 (451)
T ss_pred ccccccccccccccccccccccccccccccccee-cccccccccccccccccccccc-cccccccccccccccccceeee
Confidence 4 99999999999988777778999999999 8888988999999886655332 2222222222222222225677
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHH
Q psy3209 346 ELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNML 425 (567)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 425 (567)
++++++..+++.+..+.+..+.++.+.+....|.+.++...+.... ........+..+++.+++.++.||+|||++++.
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~ 321 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLII 321 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 8888766666677777777777777777777788887777664433 344555667778888888899999999999998
Q ss_pred HHHHHHHHHHHHH--HHHHhhhh---hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy3209 426 SAFLSSGVMIVLA--ACFYWNFD---YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLI 500 (567)
Q Consensus 426 ~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 500 (567)
+..++.++.+.+. .....+.. ....++..+++..+++.++.+..+.+..|++|++.|+++.|+...+++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~ 401 (451)
T PF00083_consen 322 GLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFII 401 (451)
T ss_pred ccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888887777664 21111111 233344444555566667788888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q psy3209 501 NKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNI 549 (567)
Q Consensus 501 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (567)
+.+.+.+.+..+....+.+++++++++.++.+++.||+++++++|++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 402 PFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 9999998888775678888888888888888899999999999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=291.46 Aligned_cols=367 Identities=17% Similarity=0.171 Sum_probs=266.5
Q ss_pred HHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHH
Q psy3209 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTS 194 (567)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 194 (567)
++..++.+.++.+..+++.....+.+|.+.++ +|+++.+.+++.+++.++..+++++.|+++||+|||++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~ 90 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKAD-----LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI 90 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 33445667778888899999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h
Q psy3209 195 LVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----Q 270 (567)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~ 270 (567)
+++++++++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+ +
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877654 8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcc
Q psy3209 271 YQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 271 wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
||+.|++..+..++.+......||++++. .++.+ ..+++ . .........++++++++
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~------------~~~~~-~---------~~~~~~~~~~~~~~~~~ 227 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWE-EAKLS------------GKGKH-S---------QSAWSVFSLSMKGLFNR 227 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHH-Hhhhh------------ccccc-c---------ccchhhhhHHHHHHHhh
Confidence 99999886544433333333456665432 10000 00000 0 00000011245667776
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHH
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL 429 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 429 (567)
+.++...... ...+..+...+.+..+.|.++.+.+.. ...+.......++.+++.++.+++.||++||+.+..+.++
T Consensus 228 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~ 305 (426)
T PRK12307 228 AQFPLTLCVF--IVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLM 305 (426)
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5444322221 111222223344566788888776544 3345556677788999999999999999999988877766
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-ccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 430 SSGVMIVLAACFYWNFDYWVSYLFTSLFGITYS-LGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
..+..+.+... ..... ..+..++++.++. .+..+....++.|.+|++.||++.|+.+.+..+++.++|.+.|.+.
T Consensus 306 ~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 306 SFLFIFPLFRI---PQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHHHHHHHH---ccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 65544433321 11111 1222233333221 2233344467889999999999999999999999999999999999
Q ss_pred Hhhccch
Q psy3209 509 INFGLYY 515 (567)
Q Consensus 509 ~~~g~~~ 515 (567)
+..|+..
T Consensus 382 ~~~g~~~ 388 (426)
T PRK12307 382 ITMGLGA 388 (426)
T ss_pred HcccHHH
Confidence 9888654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=290.29 Aligned_cols=374 Identities=18% Similarity=0.153 Sum_probs=277.8
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
++|.+++++.+..+.++++....+...|.+.++ +|.++.+.+++.+++.++..+++++.|+++||+|||+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-----FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 677788888889999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy3209 194 SLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---- 269 (567)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 269 (567)
.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (406)
T PRK11551 87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166 (406)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHh
Q psy3209 270 QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELV 348 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (567)
+||+.|++.+++.++. .+...++||+|++. .++.+.++. +...+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-------------------------------~~~~~~~~ 214 (406)
T PRK11551 167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFA-QAAGAGKQR-------------------------------APVLRALF 214 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCChhHH-hccCcchhh-------------------------------hhhHHHHh
Confidence 7999999888766553 44556689987543 111000000 00011111
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHH
Q psy3209 349 SNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSA 427 (567)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 427 (567)
+++..+.. ..+...++......+....|.|.++.+.+.+ ...+.......++.+++.++.|++.||+++|+.+..+.
T Consensus 215 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 292 (406)
T PRK11551 215 GEGRATAT--LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIY 292 (406)
T ss_pred hhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111111 1111112222233456667888888876544 45566777778889999999999999999999887765
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 428 FLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIV 507 (567)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l 507 (567)
+...++.+.+.. ..+.+...+..++.+++... ..+..+++..|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 293 ~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l 367 (406)
T PRK11551 293 AGILASLAALAA----APSFAGMLLAGFAAGLFVVG-GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL 367 (406)
T ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence 555554443332 11333333344444444433 3444568889999999999999999999999999999999999
Q ss_pred HHhhccc-hhhhHHHHHHHHHHHHH
Q psy3209 508 QINFGLY-YMFAFYAICSGINVLFT 531 (567)
Q Consensus 508 ~~~~g~~-~~~~~~~~~~~~~~~~~ 531 (567)
.+..+.. ..++..+.+.+++.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 368 LALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHH
Confidence 8875543 33444444444444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=287.29 Aligned_cols=382 Identities=16% Similarity=0.142 Sum_probs=270.9
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
+++|.....+.++.+.++++....+++.|.+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE-----FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4556667777888999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 193 TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred -h--hHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHH
Q psy3209 270 -Q--YQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRE 346 (567)
Q Consensus 270 -~--wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (567)
+ ||+.|++.++..++.++....+||++++. .+++++++..+..++..+......... +......++
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 231 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWK-EKHAGKALVRTMVDILYGGEHRIANIV----------MTLAAAMVQ 231 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHH-HHhhhhhhhhhHHHHHhccchhhhhhh----------hhhhHHhhh
Confidence 4 99999987766666556666789887544 221111111111111111000000000 000000111
Q ss_pred HhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHH
Q psy3209 347 LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNM 424 (567)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 424 (567)
..+ ..+...........+.. ........+.|.++.+..+ + .+.+.......++.+++.++.+++.||++||+.+.
T Consensus 232 ~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~ 308 (405)
T TIGR00891 232 SAG--KRWPTFVYLVVLVLFAN-LYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV 308 (405)
T ss_pred hhh--hhhHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH
Confidence 100 11111111111111111 1233455667777765433 2 34556667778889999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 425 LSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFY 504 (567)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 504 (567)
.+..+..+....+.. ...+.+...+..++.+++... ..+....++.|.+|++.|++++|+.+.+.++|+.++|.+.
T Consensus 309 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 309 CSLLAGQLLIIPVFA---IGANVAVLGLGLFFQQMLVQG-IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHcc-chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 776654333222211 122333333333344443333 3334457889999999999999999999999999999999
Q ss_pred HHHHHhhc-cchhh
Q psy3209 505 KIVQINFG-LYYMF 517 (567)
Q Consensus 505 g~l~~~~g-~~~~~ 517 (567)
|.+.+..| +...+
T Consensus 385 g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 385 ALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHhccccchhH
Confidence 99999988 54433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=283.40 Aligned_cols=381 Identities=14% Similarity=0.120 Sum_probs=257.9
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhh-hhcccCCCc--cCChhhHHHHH-----HHHHHHHHhhhhhhhhhhcccchh
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKW-QTKEYVLPF--ELDAEKVSWVV-----ATMDLGNILSPIPSGYIMDKFGRK 187 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr 187 (567)
+.......++.+.+++|...++.+.|.+ .++ + +.++. .+++. ++.+++..+++++.|+++||+|||
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNRE-----FFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 3456667778889999999988887754 444 3 45555 45543 355677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH
Q psy3209 188 NTLLLTSLVFLTSSLLTIFAQSSY--------WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI 259 (567)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 259 (567)
+++++++++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987 588899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHH
Q psy3209 260 LFSLCVGPY------------IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEEL 327 (567)
Q Consensus 260 ~i~~~l~~~------------l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (567)
+++..+... .|||+.|++.+++.++.+.....+||+|+|. .++++.+
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~-~~~~~~~-------------------- 233 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE-QQQHEQA-------------------- 233 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH-HHHhhcc--------------------
Confidence 888655432 4899999998877665555555688988654 1110000
Q ss_pred HHHHHHhhhhhcccccH-HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchh--HHHHHHHHHHHH
Q psy3209 328 DEIVLTTNENMKNKSGY-RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGR--TECLIIFSVLLV 404 (567)
Q Consensus 328 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 404 (567)
+.+++.+. +.++++++.+.. ..... +......+....|.|.++++..+.... .......++..+
T Consensus 234 ---------~~~~~~~~~~~l~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~ 300 (438)
T PRK09952 234 ---------AAKKRIPVIEALLRHPGAFLK---IIALR-LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSC 300 (438)
T ss_pred ---------cccccCCHHHHHHHchHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00001112 223343322221 11111 222234556677888887665433222 233444566678
Q ss_pred HHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHH
Q psy3209 405 VTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSS 484 (567)
Q Consensus 405 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 484 (567)
++.++.|+++||++||+.+..+.++..++.+.+..........+..++..++.+++.+.. .+..+++..|.+|++.|++
T Consensus 301 i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 301 LTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHH
Confidence 888899999999999998887766554443333221111112222222333334444433 3334588999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhc--cchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 485 AASIASIAF-ALASFLINKFYKIVQINFG--LYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 485 ~~g~~~~~~-~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
+.|+.+... .+++.++|.+.+.+.+..+ |...+...+++.+++.+.. +..+++
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 999976654 5899999999999988553 5555666666666555544 444543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=284.27 Aligned_cols=354 Identities=16% Similarity=0.127 Sum_probs=239.2
Q ss_pred HHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHH-HHHH-----HHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWV-VATM-----DLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~-~s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
.....+++.+++++|...++...|.+.++ ++.++.+.+.+ .+.. .++..+++++.|+++||+|||++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 90 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-----FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence 46677789999999999999999999999 98887776543 3332 2333578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHH
Q psy3209 192 LTSLVFLTSSLLTIFAQSSY--------WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL 263 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~ 263 (567)
.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 4688999999999999998999999999999999999998887777766666
Q ss_pred Hhhhh------------hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy3209 264 CVGPY------------IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV 331 (567)
Q Consensus 264 ~l~~~------------l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (567)
.++.. +|||+.|++..+...+..+.....||++++. .+
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~-~~----------------------------- 220 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL-AR----------------------------- 220 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH-Hh-----------------------------
Confidence 55543 3899999986544333333333345543211 00
Q ss_pred HHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhh
Q psy3209 332 LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFA 409 (567)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 409 (567)
+++.+.+..+++..++ ++.....+. ..+.....++.+..|.|.++++. +.+ .+......+..++.+++.++
T Consensus 221 ---~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (434)
T PRK15075 221 ---KHRPSMREIFRSLAAN---WRIVLAGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPI 293 (434)
T ss_pred ---hhccccccHHHHHHHh---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112222222 122222222 22223334667788999999874 333 33455666777888999999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH
Q psy3209 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA 489 (567)
Q Consensus 410 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 489 (567)
.|+++||++||+.+..+..+..+.............+.........+.+++++. ..+..+.+..|.+|++.|+++.|+.
T Consensus 294 ~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~ 372 (434)
T PRK15075 294 GGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLA 372 (434)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHH
Confidence 999999999999877665443322211111111111111122222333333333 3333347889999999999999997
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhhccc
Q psy3209 490 SIAFA-LASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 490 ~~~~~-~g~~i~~~i~g~l~~~~g~~ 514 (567)
+.+.. +++.++|.+.|.+.+..|+.
T Consensus 373 ~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 373 YSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 55555 45888999999999988864
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=279.62 Aligned_cols=355 Identities=13% Similarity=0.107 Sum_probs=260.5
Q ss_pred cchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3209 134 TWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWL 213 (567)
Q Consensus 134 ~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 213 (567)
...++.+|.+++| +|+|..+.+++.+++.+++.+++++.|+++||+|||+++..++.+++++.+++++++|++.+
T Consensus 26 ~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~l 100 (393)
T PRK09705 26 TSVGPLLPQLRQA-----SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALL 100 (393)
T ss_pred hccchhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHH
Confidence 5667899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy3209 214 FTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFIT 288 (567)
Q Consensus 214 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~ 288 (567)
+++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+ +||+.+.+.++..++.++.
T Consensus 101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~ 179 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFA 179 (393)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 7899999999988888887777777654 7999887766655443333
Q ss_pred hhcc-cCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHH
Q psy3209 289 FMFI-PETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQ 367 (567)
Q Consensus 289 ~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
+++. ++.|+ ++ ++. +...++.++++..+. ..+.++.
T Consensus 180 ~~~~~~~~~~------~~-------------------------------~~~-~~~~~~~l~~~~~~~-----l~~~~~~ 216 (393)
T PRK09705 180 WWWQSAREVA------SS-------------------------------HKT-TTTPVRVVFTPRAWT-----LGVYFGL 216 (393)
T ss_pred HHHHhcCCCc------cc-------------------------------cCC-CcCCcccccCHhHHH-----HHHHHHH
Confidence 3322 22110 00 000 001122333333221 1112222
Q ss_pred HhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 368 RLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
....+.....|.|.++.+.+.+ ...+....+.+++.++++++.+++.||+++|+....+..+..++..++... ..+
T Consensus 217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~~~ 293 (393)
T PRK09705 217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---PLQ 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---cch
Confidence 2234567778899998876544 445677778889999999999999999999998888776666665544321 111
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELF-PTNVKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICS 524 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~ 524 (567)
... ....+.+++.+... +.......+.+ |++.+++..|+.+.+.++++.++|.+.|++.|..| +...|.+.++++
T Consensus 294 ~~~--~~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~ 370 (393)
T PRK09705 294 LPV--LWAMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV 370 (393)
T ss_pred HHH--HHHHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 111 12233444444333 33334555665 46789999999999999999999999999999987 455566666666
Q ss_pred HHHHHHHHHhccCCCCCCH
Q psy3209 525 GINVLFTFFFIFETKGKSF 543 (567)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~ 543 (567)
++..++...+.+|++++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 371 VGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHhccccccchh
Confidence 6666666677777776643
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=289.68 Aligned_cols=430 Identities=20% Similarity=0.187 Sum_probs=309.0
Q ss_pred cchhhhhhhhHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhc
Q psy3209 103 DHYRRQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMD 182 (567)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d 182 (567)
++..+.++..+.++......+.............++..+ .+. ++.+.....+..+++++|.++|++++|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~-----~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD 143 (521)
T KOG0255|consen 71 DPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNL-----VCDSSTLVALGQSLFFLGVLVGSLIFGPLSD 143 (521)
T ss_pred CcCCccccccccccccccccccceeEecCCCCcccccch--hce-----eeCcHhHHHHHHHHHHHHHHHHHhhheehHh
Confidence 333444455555544343433434333344444444333 233 6778889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHH
Q psy3209 183 KFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFS 262 (567)
Q Consensus 183 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~ 262 (567)
|+|||+++++++++..++.+++++++|++.++++|+++|++.++...++..+++|++++++|+.++.+ ......|+.++
T Consensus 144 ~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~ 222 (521)
T KOG0255|consen 144 RFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLML 222 (521)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 65555555666
Q ss_pred HHhhhhh--hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCC---cchHHHHHHHH--HHhh
Q psy3209 263 LCVGPYI--QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS---QNITEELDEIV--LTTN 335 (567)
Q Consensus 263 ~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~ 335 (567)
+..++++ +||+.+++..+++++.++.+++.||+|||+ ..+++.+++.+.+++....+ .......+... ....
T Consensus 223 ~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl-~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~ 301 (521)
T KOG0255|consen 223 PAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWL-LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLK 301 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHH-HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhh
Confidence 6555555 899999999999988766677778999999 99999999998888875432 21222222211 1111
Q ss_pred -hhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHH
Q psy3209 336 -ENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLV 414 (567)
Q Consensus 336 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (567)
...+++..+.++++.|..++.++...+.++.... .|....+.......+........+.....+....+...
T Consensus 302 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-------~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~ 374 (521)
T KOG0255|consen 302 LLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL-------VYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLL 374 (521)
T ss_pred hhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-------HHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122335688999987777666666666543221 12222222222224455556666668888888889999
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHH
Q psy3209 415 DIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFA 494 (567)
Q Consensus 415 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 494 (567)
|+.|||.....+..+.+++++..++....... +...+...+..++.+.++... +.+.+|++|+..|+.+.+..+....
T Consensus 375 ~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~ 452 (521)
T KOG0255|consen 375 PEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAAR 452 (521)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888885532221 233333444444444455555 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q psy3209 495 LASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILK 551 (567)
Q Consensus 495 ~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (567)
++++++|.+...... ......+.+++....+..++..++.||++++.+.+..++.+
T Consensus 453 ~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 453 LGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 999999998644433 33333333356677777777778999999998876655555
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=279.60 Aligned_cols=346 Identities=14% Similarity=0.173 Sum_probs=241.4
Q ss_pred cchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3209 134 TWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWL 213 (567)
Q Consensus 134 ~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 213 (567)
..+++.+|.+.+| +|+++.+.|++.+++++++.+++++.|+++||+|||+++..++.....+.+....+++++.+
T Consensus 8 ~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 8 VTFSPVLSLVAED-----IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHhhHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4567889999999 99999999999999999999999999999999999998776655555544433334799999
Q ss_pred HHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH-HHHH
Q psy3209 214 FTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV-FFIT 288 (567)
Q Consensus 214 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~-~~~~ 288 (567)
+++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++..+ |||+.|++.++++++ .++.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 556666779999999999999999999999999999888887 999999998888776 4556
Q ss_pred hhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHH
Q psy3209 289 FMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQR 368 (567)
Q Consensus 289 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (567)
++++||+|++. . ++. . .. + ...+++++++++..+ ...+..++.
T Consensus 162 ~~~lp~~p~~~-~--~~~--------------~--~~---~----------~~~~~~~ll~~~~~~-----~~~~~~~~~ 204 (368)
T TIGR00903 162 LAALPALPFQA-A--EGF--------------G--FK---D----------AVKEFGALAGRKDLW-----IIGAILGFG 204 (368)
T ss_pred HHHcCCCCCCC-C--CCc--------------c--hH---H----------HHHHHHHHHcChhHH-----HHHHHHHHH
Confidence 66789988542 0 000 0 00 0 001356777776443 233333344
Q ss_pred hhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcch---HHHHH-HHHHHHHHHHHHHHHHHhh
Q psy3209 369 LSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRK---TLNML-SAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 444 (567)
...++.+..|.|.++++.+.+...+.... +..+.+.+..++++||..|| +.... ...+.++.+..+.. .
T Consensus 205 ~~~~~~~~~wlp~~L~~~g~s~~~~~~~~---l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~----~ 277 (368)
T TIGR00903 205 VALFDNLAIWLEAALRPAGLEDIAGDAVA---LAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF----E 277 (368)
T ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHHHH---HHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----c
Confidence 44567788999999987654332233333 33333444457788887553 32222 22222222222221 1
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.+....+...++.+++... ..+..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.. |....|.++++..
T Consensus 278 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 354 (368)
T TIGR00903 278 LNRLALFAFIGIAGLLMLP-AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILI 354 (368)
T ss_pred cccHHHHHHHHHHHHhhhh-hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 1222233333333333332 333445889999999999999999999999999999999987773 6666788888877
Q ss_pred HHHHHHHH
Q psy3209 525 GINVLFTF 532 (567)
Q Consensus 525 ~~~~~~~~ 532 (567)
+++.+...
T Consensus 355 ~i~~~~~~ 362 (368)
T TIGR00903 355 TIAFAIAL 362 (368)
T ss_pred HHHHHHHH
Confidence 77766653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=282.44 Aligned_cols=390 Identities=13% Similarity=0.041 Sum_probs=259.4
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
++|.++...++.......+....+..+|.+. + .|++..+.+++.+++.+++++++++.|+++||+|||++++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~-----~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~ 99 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 99 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-H-----cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence 3444455555566666666666677778765 3 389999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh----hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH-HHHHHhhhh
Q psy3209 194 SLVFLTSSLLTIFAQ----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI-LFSLCVGPY 268 (567)
Q Consensus 194 ~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~ 268 (567)
.++++++.+++++++ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|. +.+++++..
T Consensus 100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999988864 788899999999999998888888889999999999999999998888876 445554322
Q ss_pred ----hhhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccccc
Q psy3209 269 ----IQYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSG 343 (567)
Q Consensus 269 ----l~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (567)
.+||+.|++.+++.++ .++.++++||+|+.. ..+ ++++.++ +.. ++ .+.++.++.+
T Consensus 180 ~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~-------~~~---~~-------~~~~~~~~~~ 240 (452)
T PRK11273 180 MAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSC-GLP-PIEEYKN-------DYP---DD-------YNEKHEQELT 240 (452)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc-CCC-Chhhhhh-------ccc---cc-------cccccCCCcc
Confidence 2899999998887766 455667788887532 001 1111000 000 00 0000001111
Q ss_pred HHH-----HhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhh
Q psy3209 344 YRE-----LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDI 416 (567)
Q Consensus 344 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr 416 (567)
.++ +++++.++. ..+..+......+....|.|.++++..+ . ...+.......++.+++.++.|+++||
T Consensus 241 ~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr 315 (452)
T PRK11273 241 AKQIFMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 315 (452)
T ss_pred HHHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 344443332 2222222222345677899999987543 2 444555667778888999999999999
Q ss_pred h--cchHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHH
Q psy3209 417 A--GRKTLNM-LSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF 493 (567)
Q Consensus 417 ~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 493 (567)
+ +||.... ....+..++.+.+.. ....+.+...+..++++.+... .......+..|.+|++.+|+++|+.+...
T Consensus 316 ~~~~r~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 392 (452)
T PRK11273 316 VFRGNRGATGVFFMTLVTIATIVYWL--NPAGNPTVDMACMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFG 392 (452)
T ss_pred HccCCcchHHHHHHHHHHHHHHHHHH--hcccChHHHHHHHHHHHHHHHh-HHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence 9 4554322 222222222222211 1111222222223333332211 11222346779999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 494 ALASFL-INKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 494 ~~g~~i-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
++|+.+ +|.+.|.+.+..|+...|++.++.++++.++...+.+
T Consensus 393 ~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 393 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 998765 7999999999999999998888887777666554433
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=274.74 Aligned_cols=433 Identities=20% Similarity=0.181 Sum_probs=312.8
Q ss_pred hhhHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCC---ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccch
Q psy3209 110 MGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLP---FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGR 186 (567)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~---~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 186 (567)
...|+....+.+...+.|.++|+...++.+.|.+...++..+ =+.++...+.+..+..+|..+||++.|++.||+||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 346788888899999999999999999999988877633221 12567778899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH
Q psy3209 187 KNTLLLTSLVFLTSSLLTIFAQ-------SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI 259 (567)
Q Consensus 187 r~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 259 (567)
|+++...++++.+++++++++. -.+++.+.|++.|+|.|+-+|.+.++.+|...+++||...+..-+...+|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999888753 256788999999999999999999999999999999999888776666666
Q ss_pred HHHHHhhhhh-------------------hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCC
Q psy3209 260 LFSLCVGPYI-------------------QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320 (567)
Q Consensus 260 ~i~~~l~~~l-------------------~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~ 320 (567)
+.|.+++-.+ -||..|.+.++++++.+...+.+|||++|.....++.+.+.+..++....+
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~ 273 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVD 273 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccc
Confidence 6665554443 299999999999988888888999999987444444444432222211110
Q ss_pred cchHHHHHHHHHHhhhhhccccc---HHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCch--hH--
Q psy3209 321 QNITEELDEIVLTTNENMKNKSG---YRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIG--RT-- 393 (567)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 393 (567)
.++...........+.+ +...+... .-+.++.....++..-. .++....+...+++..+.... ..
T Consensus 274 ------~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDi-afy~~nL~~s~I~~~ig~~~~~~~~~~ 345 (538)
T KOG0252|consen 274 ------IEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDI-AFYGQNLFQSVIFSAIGVIPSANTYHE 345 (538)
T ss_pred ------cchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhh-hhhccccHHHHHHHhhccCCCcchHHH
Confidence 00000000111111111 33333321 22444444444444433 567777788888875554311 11
Q ss_pred ------HHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccc
Q psy3209 394 ------ECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGI 467 (567)
Q Consensus 394 ------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (567)
...++.....++|..++..++|++|||+..+.+++++.+..+.++.......+....++...+..++..++-..
T Consensus 346 ~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ 425 (538)
T KOG0252|consen 346 LFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA 425 (538)
T ss_pred HHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc
Confidence 11222233344577777889999999999999999999888887763321112233344444445555556666
Q ss_pred hhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccchhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy3209 468 IPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI-----NFGLYYMFAFYAICSGINVLFTFFFIFETKGKS 542 (567)
Q Consensus 468 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (567)
....+.+|.+|++.|++..|+....+-.|++++...+.++.+ ..|...++++++++++++.++. ++.||+++++
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~ 504 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKS 504 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccC
Confidence 667889999999999999999999999999999999999999 7888899999999998887776 5667999999
Q ss_pred HHHHHHHHh
Q psy3209 543 FQQIQNILK 551 (567)
Q Consensus 543 ~~~~~~~~~ 551 (567)
+++++.+.+
T Consensus 505 leei~~e~~ 513 (538)
T KOG0252|consen 505 LEEISNEEE 513 (538)
T ss_pred HHHhcChhh
Confidence 988755443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=284.39 Aligned_cols=384 Identities=17% Similarity=0.142 Sum_probs=280.1
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
++|..++.++++.++..++.++++.++|.+.++ +|.+..+.+|+.++|.++++++++++|+++||+|||++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-----l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-----LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 356778888999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhccc-CCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 194 SLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEIT-DKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
.+++.++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999998888888787765 678999999999999999999999999887
Q ss_pred -hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHH----------HHHHhcCCCcchHHHHH-------HH
Q psy3209 270 -QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKK----------SLEWFKGKSQNITEELD-------EI 330 (567)
Q Consensus 270 -~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-------~~ 330 (567)
+|||.|++...++++ .++..+++||.|+.. .++.+...... .+............-.. ..
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL 236 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 899999998877766 445556678765311 11111111000 00000000000000000 00
Q ss_pred --HHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHH
Q psy3209 331 --VLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVT 406 (567)
Q Consensus 331 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 406 (567)
....+.+.+.+.--.++++++.+.... +..+.....++....+.|.+++...+. .+.+....+..++..++
T Consensus 237 ~~f~~~e~~~~~p~~~~~lf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 237 GLFIRTQLAASRPMIDMRLFTHRIILSGV-----VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHhcCCCCCcCHHHhCCcccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 000011111111123566665433222 222222223456667888888876543 56677888888999999
Q ss_pred HhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHH
Q psy3209 407 NFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAA 486 (567)
Q Consensus 407 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 486 (567)
.++.|++.||+|+|+.+..+.++..++.+++... ....+.+......++.+++.+....+.. ..+.+.+|+++++.+.
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~ 389 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMT-DFSTQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAG 389 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHH
Confidence 9999999999999998888877776666554432 1122334445556667777766554454 6777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 487 SIASIAFALASFLINKFYKIVQIN 510 (567)
Q Consensus 487 g~~~~~~~~g~~i~~~i~g~l~~~ 510 (567)
++.++.+++|+.+|+.+.|.+.++
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=284.17 Aligned_cols=404 Identities=16% Similarity=0.135 Sum_probs=269.8
Q ss_pred HHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHH
Q psy3209 114 KQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLT 193 (567)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 193 (567)
+++.....+.++.+..+++....++.+|.+.++ +|+++.+.+++.+.+.+++.+++++.|+++||+|||++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE-----FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344456667778888899999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy3209 194 SLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---- 269 (567)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 269 (567)
.++.+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHH----HhhhhhcccccHH
Q psy3209 270 QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVL----TTNENMKNKSGYR 345 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 345 (567)
+||+.|++.++..++.++....+||++++. .++++.++..+..+.....+............ ...........+.
T Consensus 172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (496)
T PRK03893 172 GWRALFFIGILPIIFALWLRKNLPEAEDWK-EKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAI 250 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhh-hhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 899999876554444444455678876543 11111111111111100000000000000000 0000000000000
Q ss_pred -------------HH-hcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhh
Q psy3209 346 -------------EL-VSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFA 409 (567)
Q Consensus 346 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 409 (567)
.. .+....+......+....+..+...+....+.|.++++. +.. .+.+.......++.+++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 330 (496)
T PRK03893 251 VAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000011111111111111111223556788888643 433 45567777888889999999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH
Q psy3209 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA 489 (567)
Q Consensus 410 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 489 (567)
.|++.||+++|+.+..+..+..+..+.+... .....+......++.++ .+.+..+....++.|.+|++.|++++|+.
T Consensus 331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 407 (496)
T PRK03893 331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAI--GGANVWVLGLLLFFQQM-LGQGISGLLPKLIGGYFDTEQRAAGLGFT 407 (496)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHH-HhcccchhhHHHHHhhCCHHHhhcccchh
Confidence 9999999999998877765555444332221 11122222222222222 22233344457888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Q psy3209 490 SIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGI 526 (567)
Q Consensus 490 ~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~ 526 (567)
+....+|+.++|.+.|.+.+..|+...+...++...+
T Consensus 408 ~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 408 YNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred hhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999987776555544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=267.24 Aligned_cols=368 Identities=12% Similarity=0.104 Sum_probs=264.2
Q ss_pred HHHhhhhHHHhhhhccchhhhhhhhhh-cccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH
Q psy3209 119 AFSASLPIFIVGCWLTWPSVALYKWQT-KEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF 197 (567)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 197 (567)
+....++.+.....-...+++.+.+.+ + +|+|.+|.+++.+++.++++++.++.|++.||+|.|+++.++.+++
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~-----~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIG-----FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 333444444444555666777777765 7 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh----
Q psy3209 198 LTSSLLTIFA-----QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY---- 268 (567)
Q Consensus 198 ~i~~~~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---- 268 (567)
++.+++++++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++.+.
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999987 8999999999999998 67889999999999999999999999976666666544333321
Q ss_pred ------------------hhhHHHHHHHHHHHHHHH-HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHH
Q psy3209 269 ------------------IQYQTLNIILGVIPLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDE 329 (567)
Q Consensus 269 ------------------l~wr~~f~~~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (567)
.+||...++..++.++.. +.++++++.|.
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------- 237 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-------------------------------- 237 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--------------------------------
Confidence 247887777777776644 44444444321
Q ss_pred HHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhh
Q psy3209 330 IVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFA 409 (567)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (567)
++.......+.+|+|..|. +++.+++.+.++..+..+.|.++++............+..+...+.+++
T Consensus 238 -------~~~~~~~~~~vlk~~~~Wl-----lslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rpl 305 (462)
T PRK15034 238 -------SRASIADQLPVLQRLHLWL-----LSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSV 305 (462)
T ss_pred -------cccCHHHHHHHhCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 0011123455677765543 3333444555666777788888877542222222334456778889999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhccccchhhhhcccCCCh--------
Q psy3209 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN--FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPT-------- 479 (567)
Q Consensus 410 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 479 (567)
+|+++||+|+++++.++.+.+.++...+....... .+.+...+.++....+.+.+..++ +-++...+|+
T Consensus 306 gG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~ 384 (462)
T PRK15034 306 GGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKM 384 (462)
T ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccc
Confidence 99999999999999988877766654433322111 123333333333444555555555 3677777774
Q ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 480 -------------NVKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 480 -------------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
++.|.+.|+....+.+|+++.|.++|...+..| +...|+++.++.+++.++.+..+.+
T Consensus 385 ~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 385 KGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred cccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 267899999999999999999999999988876 4456888888888888887766543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=276.19 Aligned_cols=382 Identities=18% Similarity=0.157 Sum_probs=270.5
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 205 (567)
.+...++...++...|.+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQED-----LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 345566777788888999888 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHH
Q psy3209 206 FAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVI 281 (567)
Q Consensus 206 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~ 281 (567)
++++++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+ +||+.|++.+++
T Consensus 78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (399)
T TIGR00893 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157 (399)
T ss_pred HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888865 899999998888
Q ss_pred HHHHH-HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHH
Q psy3209 282 PLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIV 360 (567)
Q Consensus 282 ~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (567)
.++.. +.+++.||+|+.. +...+++.....+....+. ...+.++......++.++++..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLLAEQ-----------QGKGPSTPKKYQIKELLKDRRVWGL---- 220 (399)
T ss_pred HHHHHHHhhheecCCCCcc--ccCCHHHHhhcchhhcccc-----------ccccccCCCccchHHHhcCHHHHHH----
Confidence 77644 4445567765311 0011111100000000000 0011112233456677776544322
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHH-HHHHHHHHH---
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNML-SAFLSSGVM--- 434 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~-~~~~~~~~~--- 434 (567)
.+..+........+..+.|.++.+..+. ...+.......++.+++.++.+++.||++||+.... ......++.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 221 -ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 2222222334556777888888765443 345566777788899999999999999999862111 111111111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Q psy3209 435 IVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG-L 513 (567)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~ 513 (567)
.+...........+ ..+....++.+. .+..+..+++..|.+|++.|+++.|+.+.+.++|..++|.+.|.+.+..| +
T Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~ 377 (399)
T TIGR00893 300 SLLMFATNYVNIPY-AALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF 377 (399)
T ss_pred HHHHHHhccchhHH-HHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence 11111111011222 222222222222 22456667899999999999999999999999999999999999999888 8
Q ss_pred chhhhHHHHHHHHHHHHHH
Q psy3209 514 YYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~ 532 (567)
...+.+.+++.+++.++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 378 AGALMVVAALALIGALSYL 396 (399)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7788887777777665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=275.75 Aligned_cols=361 Identities=14% Similarity=0.071 Sum_probs=259.7
Q ss_pred hhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS 201 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 201 (567)
..+..+..+. ....++.+|.+.++ +|++..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~ 82 (377)
T TIGR00890 9 TVIMCFTSGY-VYTWTLLAPPLGRY-----FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF 82 (377)
T ss_pred HHHHHHHhhH-HhhhhhHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHH
Confidence 3333444443 33567889999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy3209 202 LLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNII 277 (567)
Q Consensus 202 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~ 277 (567)
++++++++++.++++|++.|++.+..++.....+.+++| ++|+++.++...+..+|.++++.+...+ +||+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 83 TFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 999999999999999999999999888888888999986 6799999999999999887655444433 79999999
Q ss_pred HHHHHHHHH-HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHH
Q psy3209 278 LGVIPLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKA 356 (567)
Q Consensus 278 ~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (567)
.++++++.. +.++++++.|+.. .++ +++ ...+..+.++.++++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~---------------~~~~~~~~~~~~~~~~~~~~ 210 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGYPPGQL----IKT------------NIE---------------VSVKDYTVWEMLRTPQFWVL 210 (377)
T ss_pred HHHHHHHHHHHHHHheecCchhc----ccc------------Ccc---------------cchhhhhHHHHHcCccHHHH
Confidence 998887754 4444555543210 000 000 00001133455665544322
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHH
Q psy3209 357 LIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 435 (567)
....+.. . ........+.+.+.++.+.. ...+.......+..++++++.+++.||++||+.+..+..+..++.+
T Consensus 211 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 211 YLSFFLN-A----VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHH-h----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 2211111 1 11222334455555554433 3345666777888999999999999999999998888777777665
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy3209 436 VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYY 515 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~ 515 (567)
++.... .......+...++.+.+.+... +....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..|+..
T Consensus 286 ~~~~~~--~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 362 (377)
T TIGR00890 286 AMLFIP--MLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY 362 (377)
T ss_pred HHHHcc--cchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 544311 1112222233344444444333 3334788899999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHH
Q psy3209 516 MFAFYAICSGINV 528 (567)
Q Consensus 516 ~~~~~~~~~~~~~ 528 (567)
.|.+.+++.+++.
T Consensus 363 ~f~~~~~~~~~~~ 375 (377)
T TIGR00890 363 TFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=269.44 Aligned_cols=356 Identities=18% Similarity=0.198 Sum_probs=257.8
Q ss_pred hhhhHHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS 200 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 200 (567)
..+..+...++.++..+.+|. +.++ +|.++.+.|++.+++.+++.+++++.|+++||+|||++++++.++++++
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQ-----LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 445566666777778888887 5677 9999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH--------hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 201 SLLTIFA--------QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 201 ~~~~~~~--------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
.++++++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 7776654 25778999999999999999999999999999999999999999888888888888887765
Q ss_pred -hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHh
Q psy3209 270 -QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELV 348 (567)
Q Consensus 270 -~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (567)
||++.+++.++++++..+.....|+++. +++ ++.++++.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------------------------------~~~~~~~~~ 215 (399)
T PRK05122 175 GGLAGLGLLIMLLALLGLLLARPRPAVPP----VKG-----------------------------------ERLPFRRVL 215 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc-----------------------------------cchhHHHHH
Confidence 8999888776665543333333333210 000 000122222
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 349 SNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
++ .+..... ..+.. ..+.....+.+.++.+.+. ...+.......++.+++.++.+++.||+++|+.+..+..
T Consensus 216 ~~--~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~ 287 (399)
T PRK05122 216 GR--VWPYGMG-LALAS----IGFGTIATFITLYYAARGW-DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLL 287 (399)
T ss_pred HH--HHHHHHH-HHHHH----HHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 21 1111111 11111 1223344566666655443 334455566777888999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
+..++.+++... .+.+..++..++.+++.+..+ +.......+.+|++.|+++.|+.+....+|..+++.+.|.+.
T Consensus 288 ~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 288 VEILGLLLLWLA----PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred HHHHHHHHHHHh----ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665554431 233444445556666665433 333356778889999999999999999999999999999999
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 509 INFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
+..|++..+++.+++.+++.++..++
T Consensus 363 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 363 SWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888888777776665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=264.84 Aligned_cols=356 Identities=14% Similarity=0.122 Sum_probs=253.7
Q ss_pred HhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q psy3209 121 SASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS 200 (567)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 200 (567)
.+.++.+..........+.+|.+.++ +|+++.+.++..+++.++..+++++.|+++||+|||++++.+.++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~ 98 (394)
T PRK10213 24 SVAFCVACLIIVEFLPVSLLTPMAQD-----LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 33344444334333555678889888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 201 SLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 201 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
.++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+ +||+.|+
T Consensus 99 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 99 CLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred HHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888876 8999999
Q ss_pred HHHHHHHHHHH-HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhH
Q psy3209 277 ILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRK 355 (567)
Q Consensus 277 ~~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (567)
+.++++++..+ ....+||+|+.. . +...+.++.+++|..+.
T Consensus 179 ~~~~l~~~~~l~~~~~~p~~~~~~----~----------------------------------~~~~~~~~~l~~~~~~~ 220 (394)
T PRK10213 179 AAAVMGVLCIFWIIKSLPSLPGEP----S----------------------------------HQKQNTFRLLQRPGVMA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHCCCCCccc----c----------------------------------cchhHHHHHhcCHHHHH
Confidence 98877665433 333467654210 0 00112345566654443
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-hhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYA-STTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
..+..+ + .+.+.+....+. |.+..+.+.. ...+......+++.+++.++.+++.||.++ +.+..+..+..+.
T Consensus 221 ~~~~~~-~----~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~ 294 (394)
T PRK10213 221 GMIAIF-M----SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVS 294 (394)
T ss_pred HHHHHH-H----HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHH
Confidence 322211 1 111223334454 5555544443 344566777788899999999999999644 4333333333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
.+++... ..+.+...+..++.+++++... +...+++.+..| +.++.+.+......++|..+||.+.|.+.+..|+
T Consensus 295 ~~~l~~~---~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~ 369 (394)
T PRK10213 295 ALVLTLW---GSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL 369 (394)
T ss_pred HHHHHHH---hhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 2222221 1234445555666666665543 333356777777 5567777888888899999999999999999888
Q ss_pred chhhhHHHHHHHHHHHH
Q psy3209 514 YYMFAFYAICSGINVLF 530 (567)
Q Consensus 514 ~~~~~~~~~~~~~~~~~ 530 (567)
...+...+++.++..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 370 TSPLMLSGTLMLLTALL 386 (394)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 77777766655554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=270.47 Aligned_cols=364 Identities=13% Similarity=0.122 Sum_probs=265.1
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
+.....++++.+..+......++.+|.+.++ +|++..+.+++.+.+.+++.+++++.|++.||+|||++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~ 80 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVMGPIAEY-----FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556677888888888899999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----h
Q psy3209 196 VFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----Q 270 (567)
Q Consensus 196 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~ 270 (567)
+.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+ +
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999998899999999999999999999998888888888877776543 8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcc
Q psy3209 271 YQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 271 wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
||+.|++.+++.++..+..++ .+.|+. .++++ ++ ++ ...++.+ +
T Consensus 161 w~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~--------------~~---------------~~---~~~~~~~-~ 204 (394)
T PRK03699 161 WYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP--------------KA---------------DK---PVAKEKW-G 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc--------------cc---------------cC---ccccccC-C
Confidence 999999988877664433332 222210 00000 00 00 0000001 1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
+ .+..+.+..+......+.+..|.|.++++..+ + .+.+.......++.++++++.++++||+++|+.+.....
T Consensus 205 ~-----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~ 279 (394)
T PRK03699 205 I-----GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG 279 (394)
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 1 11222222222233455677899999976543 3 345566677778899999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
+..+...++.. ..+.+...+..++.+++.+. ..+...++..+..| +.++...|.......+|..++|.+.|.+.
T Consensus 280 ~~~~~~~~~~~----~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~ 353 (394)
T PRK03699 280 LALVLMYLFVN----TDDPSHLLYAILGLGFFSSA-IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV 353 (394)
T ss_pred HHHHHHHHHHH----cCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55544333322 12233333344455554443 23333356667666 44677888888899999999999999999
Q ss_pred HhhccchhhhHHHHHHHHHHHHH
Q psy3209 509 INFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+..|++..+++.+++.+++.+.+
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 354 AHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHhCchhhhhhhHHHHHHHHHHH
Confidence 99999988888887777765544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=276.78 Aligned_cols=367 Identities=12% Similarity=0.076 Sum_probs=239.6
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
+..+...+......+.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~-----~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDN-----LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444445567889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh-------------hh
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY-------------IQ 270 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~-------------l~ 270 (567)
++++++++.++++|+++|++.+.. +....+++|++|+++|++++++.+....+|..+++.+.+. .|
T Consensus 118 ~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 118 MSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 999999999999999999998764 4456678999999999999999876655555554433321 37
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc-cCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhc
Q psy3209 271 YQTLNIILGVIPLVFFITFMFI-PETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVS 349 (567)
Q Consensus 271 wr~~f~~~~~~~~~~~~~~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (567)
||+.|++.++++++..+..+++ ++.|+. +.++..+ +.. .++......+++.++
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~------~~~~~~~-------~~~-------------~~~~~~~~~~~~~~~ 250 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPDG------NYRELKK-------SGT-------------MPKDSFSKVLRYGVT 250 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCCC------chhhHHh-------cCc-------------cccccHHHHHHHHHc
Confidence 9999999998887755444444 344420 0000000 000 000000112344555
Q ss_pred chhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchH------
Q psy3209 350 NYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKT------ 421 (567)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------ 421 (567)
+++.+.. .+.++..+.....+..+.|.++.+. +.. ..++....+..++.+++++++|+++||++||+
T Consensus 251 ~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~ 325 (476)
T PLN00028 251 NYRTWIL-----ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRL 325 (476)
T ss_pred CchhHHH-----HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhH
Confidence 5443321 1112222223345566788887665 333 44566777788999999999999999998652
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy3209 422 -LNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLI 500 (567)
Q Consensus 422 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 500 (567)
.......+.++.++++.. ..+.+...+.+++++++....... .+++..+..| +++|++.|+.+..+++|++++
T Consensus 326 ~~~~~~~~l~~i~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~ 399 (476)
T PLN00028 326 WALWIVQTLGGVFCIWLGR----ANSLGAAIVVMILFSIFVQAACGA-TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLT 399 (476)
T ss_pred HHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHhhhh-hcccCcccCh-hhchhhhhhhhccccHHHHHH
Confidence 211222222222221111 112233333344444443332222 3456667654 789999999988888888888
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 501 NKFYKIVQINFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 501 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
|.+.+ ..+..++...|.+.+++.+++.++.++.
T Consensus 400 ~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 400 QLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 87654 1123357778888887777776665443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=266.08 Aligned_cols=363 Identities=13% Similarity=0.102 Sum_probs=259.1
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLT 199 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 199 (567)
....+..+..+.......+.+|.+.+| +|.+..+.+++.+++.+++.++++++|+++||+|||+++.++..+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHD-----VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHH-----cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 344556777778888888999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q psy3209 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLN 275 (567)
Q Consensus 200 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f 275 (567)
+.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+ +||+.|
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f 160 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF 160 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHH
Confidence 9999999999999999999999999988888888999999999999999999999999999988887765 899999
Q ss_pred HHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
++.+++.++. +..++++||.++. .+. + . + ...+.++++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~lp~~~~~-----~~~--------------~-~-----------------~-~~~~~~~~~~~~ 202 (382)
T PRK10091 161 LLIAVFNIAVLASIYFWVPDIRDE-----AKG--------------G-L-----------------R-EQFHFLRSPAPW 202 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcc-----ccc--------------C-H-----------------H-HHHHHhcChHHH
Confidence 9998877664 3445567875310 000 0 0 0 001223333222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSG 432 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 432 (567)
... ........+.+....|.+.++.+. +.+ ...+......+++.+++.++.+++.||+++|+.+..+..+..+
T Consensus 203 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i 277 (382)
T PRK10091 203 LIF-----AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVL 277 (382)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHH
Confidence 111 111111122333445556666553 333 4455667778889999999999999999999988888777666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q psy3209 433 VMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN-F 511 (567)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~ 511 (567)
+.+++.... .+.+...+..++.+.+......+.......+..|.+.++.+ ..+....+|.++||.+.|.+.+. .
T Consensus 278 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~ 352 (382)
T PRK10091 278 ALLMLFFFG---GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGL 352 (382)
T ss_pred HHHHHHHHH---hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHccc
Confidence 665443311 12233333333444433322333332344455555555544 34677899999999999999985 5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhc
Q psy3209 512 GLYYMFAFYAICSGINVLFTFFFI 535 (567)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~~ 535 (567)
++...+...++++++.......+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 353 AYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHh
Confidence 777777777666665554443333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=277.43 Aligned_cols=388 Identities=14% Similarity=0.114 Sum_probs=258.5
Q ss_pred HHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHH
Q psy3209 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTS 194 (567)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 194 (567)
+|.++..+.+..+........++..+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQI-----FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHH-----hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 45555555555444333445567788999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHH-HHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy3209 195 LVFLTSSLLTIFAQSSYWLFT-SRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---- 269 (567)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~l~~-~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 269 (567)
++.++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..+++.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 5799999998877777788899996 7899999999999999988888877765
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc-cCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHh
Q psy3209 270 QYQTLNIILGVIPLVFFITFMFI-PETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELV 348 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~~~~~~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (567)
|||+.|++.+++.++..+..+++ ++.+.. .+.+.++ . +....... ..+. .. ....++..+..+ .+++
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~-~---~~~~~~~~-~~~~-~~--~~~~~~~~~~~~-~~~~ 238 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQ---RVSKSKS-K---EGLPPDGS-TKKL-SK--KSTAEKINRFLD-FSLF 238 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCccc---ccccccc-c---ccCCCCCc-cccc-cc--cchhhhhhhhcc-hHHh
Confidence 89999999998877644433333 332110 0000000 0 00000000 0000 00 000000000011 2355
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh--cchHHHHH
Q psy3209 349 SNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIA--GRKTLNML 425 (567)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~ 425 (567)
+++.++.... ..+......+....+.+.++++.+.. ...+....+.+++.++++++.+++.||. ++++....
T Consensus 239 ~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 313 (455)
T TIGR00892 239 THRGFLVYLS-----GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF 313 (455)
T ss_pred cCchHHHHHH-----HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence 6554432222 11112223345566778887765544 4455667777888899999999999973 33433333
Q ss_pred HHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 426 SAFLS--SGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKF 503 (567)
Q Consensus 426 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 503 (567)
+..+. +++.+++.. ..+.+..++..++++++.+.. .+..++.+.|.+|+++++++.|+.+...++|.+++|.+
T Consensus 314 ~~~~~~~~l~~ll~~~----~~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 314 SFALLFNGLTHLLCAL----AGDYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 22222 222222211 223444455566666665543 34445788899999999999999999999999999999
Q ss_pred HHHHHHhhc-cchhhhHHHHHHHHHHHH
Q psy3209 504 YKIVQINFG-LYYMFAFYAICSGINVLF 530 (567)
Q Consensus 504 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 530 (567)
+|.+.+..| +...|++.+++.+++.+.
T Consensus 389 ~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 389 AGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred eeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999998875 777888877766665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=279.13 Aligned_cols=395 Identities=12% Similarity=0.100 Sum_probs=271.4
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhccc-----------------CCCccCChhhHHHHHHHHHHHHHhhh
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEY-----------------VLPFELDAEKVSWVVATMDLGNILSP 174 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-----------------~~~~~~s~~~~~~~~s~~~~~~~~~~ 174 (567)
...++.+..++.++......++...+.+.+.+.++.. ..+++++..+.|++.+++.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4456667777777777888898888888887766211 11589999999999999999999999
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHH
Q psy3209 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA--QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFT 252 (567)
Q Consensus 175 ~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~ 252 (567)
++.|+++||+|||+++.++.++++++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887654 568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHh-hcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHH
Q psy3209 253 GHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFITF-MFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326 (567)
Q Consensus 253 ~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (567)
.+..+|.++++++++.+ +||+.|++.++++++..+.+ .+.+|+|+.. ++.++++.+. .+.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~-i~~----------- 239 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKY-INS----------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHH-HHh-----------
Confidence 99999999998887664 79999999998887755444 4466776421 1111111111 000
Q ss_pred HHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHH
Q psy3209 327 LDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLV 404 (567)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 404 (567)
.....+.+.+.+.+++++++++..+. ..+..+......+.+..|+|.|+.+..+. ...+....+..++.+
T Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 240 ---SLQGQKGSTRQSLPIKAIPKSLPVWA-----IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred ---hcccccCCCCCCCCHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 00000001122345778887764432 23333334445677788999999775433 345566667788899
Q ss_pred HHHhhHHHHHhhhcchHHH--------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccC
Q psy3209 405 VTNFACSPLVDIAGRKTLN--------MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSEL 476 (567)
Q Consensus 405 ~~~~~~g~l~dr~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (567)
++.+++|+++||+++|+.. ..+......+..++.. .....+.+..++.+++.+.+.+.. .+..+....+.
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 389 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL-PYLSAAFYLTIIILTLANAVSSGP-LAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHHhhhh-hhhhhhchhhc
Confidence 9999999999997644211 1111111111111111 111112222333333333333322 22333455677
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhhHHHHHHHHHHHHH
Q psy3209 477 FPTNVKSSAASIASIAFALASFLINKFYKIVQINF---GLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 477 ~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~---g~~~~~~~~~~~~~~~~~~~ 531 (567)
.| +.+|.+.|+.++.+.++++++|.+.|.+.+.. +|...|.+.++..+++.++.
T Consensus 390 ~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 390 AP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 66 58999999999999999999999999887643 36667777777777765554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=263.81 Aligned_cols=374 Identities=14% Similarity=0.078 Sum_probs=268.9
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
+.+.++..+.+.+..+...+....+.+.+|.+.++ +|.++.+.++..+.+.+++.+++++.|+++||+|||++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~ 82 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-----FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVML 82 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 35566677777788888888888899999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 269 (567)
++..+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 83 AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888899999999999999999988888788888888877665
Q ss_pred --hhHHHHHHHHHHHHHHHH-HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHH
Q psy3209 270 --QYQTLNIILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRE 346 (567)
Q Consensus 270 --~wr~~f~~~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (567)
+||+.|++.+++.++..+ .++.+||+++.. +++ .. . .+...+++.
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~--~-------------~~~~~~~~~ 210 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWRAMPETAGRV----GEK-------------LS--L-------------KELGRDYKL 210 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccc-------------cc--H-------------HHHHHHHHH
Confidence 899999998888776433 445577764211 000 00 0 001123456
Q ss_pred HhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHH
Q psy3209 347 LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNM 424 (567)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 424 (567)
++++|.++...+...+.. ........+.|.++.+..+. .+.+.......++.+++.++.+++.||+++|+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~ 285 (406)
T PRK15402 211 VLKNRRFVAGALALGLVS-----LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIR 285 (406)
T ss_pred HHcCcHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 667665443222211111 11233445567666554332 23344445556678889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 425 LSAFLSSGVMIVLAACFYWN-FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKF 503 (567)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 503 (567)
++.++..++..++....... .+.+...+..++++++.+....+.. ...... +++++|++.++.+....++..+++.+
T Consensus 286 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~ 363 (406)
T PRK15402 286 MGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLY-RLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIEL 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHH-HHHhhh-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666655432111 2233344455556666554333332 333333 44889999999999999999999999
Q ss_pred HHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 504 YKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 504 ~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
.+.+.+..++....+..++..++..+
T Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 364 SKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHhcccCCchHHHHHHHHHHHHHHHH
Confidence 99998877765433333333333333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=263.84 Aligned_cols=353 Identities=16% Similarity=0.158 Sum_probs=252.0
Q ss_pred hHHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
+.+...+..+...|.+|. +.++ +|.|..+.|++.+++.+++.++++++|+++||+|||++++++.++..++.+.
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~~-----lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHHD-----LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 344445556667778885 4677 9999999999999999999999999999999999999999998887776553
Q ss_pred HHH--------HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q psy3209 204 TIF--------AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QY 271 (567)
Q Consensus 204 ~~~--------~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 271 (567)
... .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ ||
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 322 358899999999999999988888889999999999999999999999999998988888765 89
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcch
Q psy3209 272 QTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNY 351 (567)
Q Consensus 272 r~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (567)
|+.+.+..+..++.+......||.+. ++ +.+.+.++.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------------------~~~~~~~~~~~-- 216 (392)
T PRK12382 178 AALALTTMVLPLLAWAFNGTVRKVPA----HA-----------------------------------GERPSLWSVVG-- 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC----Cc-----------------------------------ccCchHHHHHH--
Confidence 88777655544333322222333211 00 00001122221
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHH
Q psy3209 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSS 431 (567)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 431 (567)
..+...+..+.. .........+.+.++.+.+. ...+......+++.+++.++.|++.||+++|+.+..+..+..
T Consensus 217 ~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 290 (392)
T PRK12382 217 LIWKPGLGLALQ-----GVGFAVIGTFVSLYFASKGW-AMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET 290 (392)
T ss_pred HHHHhHHHHHHH-----HHHHhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence 111111111111 11233445566677766543 234455556677788899999999999999998888877777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 432 GVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
++.+++.. ..+.+..++..++.+.+.+... +...+...+.+|+++||++.|+.+....+|..++|.+.|.+.+..
T Consensus 291 ~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 291 VGLLLLWL----APTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred HHHHHHHH----cccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655433 1233444445555565555433 333467788889999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHh
Q psy3209 512 GLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
|+...|.+.+++.+++.++....
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred CchHHHHHHHHHHHHHHHHHHhh
Confidence 99999998888877776665443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=266.83 Aligned_cols=377 Identities=17% Similarity=0.209 Sum_probs=265.8
Q ss_pred HHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHH
Q psy3209 115 QAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTS 194 (567)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 194 (567)
++.....+.+..+..+++....++..|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAE-----WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 44445556667777788888888899999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h
Q psy3209 195 LVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----Q 270 (567)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~ 270 (567)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888765 8
Q ss_pred hHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhc
Q psy3209 271 YQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVS 349 (567)
Q Consensus 271 wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (567)
|++.|++.+++.++ .++.+.++||+|++. .++ +.++..+..++......+..++ ...+....+...+...+.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 245 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFL-VSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQKATQGTKRSVFKALFQ 245 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHH-Hhc-CHHHHHHHHHHHHHhccccccc--cccccccccchhhHHHHHHhc
Confidence 99999988766555 455666789988765 333 2333222222221111000000 000000000001111222333
Q ss_pred chhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 350 NYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
++.. +...... +..+......+....+.|.+..+.+.. ...+.......++.+++.++.+++.||+++|+... +..
T Consensus 246 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 322 (398)
T TIGR00895 246 GKTA-RITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLL 322 (398)
T ss_pred chhH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHH
Confidence 3222 2222222 222223334556667778666555544 44556677778889999999999999999984433 333
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIV 507 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l 507 (567)
+..+...++... ..+.+..++..++.+++.+... +..+++..|.+|++.|+++.|+.+.+..+|.+++|.+.|.+
T Consensus 323 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 323 LGAVFAVLVGST---LFSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333333332221 1234444555566666665543 44458999999999999999999999999999999998875
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=269.58 Aligned_cols=397 Identities=12% Similarity=0.056 Sum_probs=263.9
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
+.......+.......+........|.+. + +|+++.+.+++.+++.++..+++++.|+++||+|||++++++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~ 99 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-E-----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHH-H-----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence 44445555566666666666677777665 4 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy3209 196 VFLTSSLLTIFA----QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY--- 268 (567)
Q Consensus 196 ~~~i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~--- 268 (567)
+.+++.+++++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999888765 4677888999999999999888888999999999999999999999999988887765443
Q ss_pred --hhhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccccc-H
Q psy3209 269 --IQYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSG-Y 344 (567)
Q Consensus 269 --l~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 344 (567)
.+||+.|++.++++++ .++.++++||+|+.. ..+..++. +.+..+... + +.+.+.+.+.. .
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~--~----~~~~~~~~~~~~~ 244 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC-GLPPIEEY--------RNDYPDDYN--E----KAEQELTAKEIFM 244 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc-CCCCchhc--------ccccccccc--c----ccccccchHHHHH
Confidence 2899999998888776 445566678876432 00000000 000000000 0 00000000011 1
Q ss_pred HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHH
Q psy3209 345 RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTL 422 (567)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 422 (567)
+.+++++.++... +..+......+.+..|.|.++++..+ + ...+....+..+..+++.+++|++.||+++++.
T Consensus 245 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 319 (438)
T TIGR00712 245 QYVLPNKLLWYIA-----IANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR 319 (438)
T ss_pred HHHccCchHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 2344554333222 22222223345677899999987543 2 345566777888899999999999999964332
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHH-HHH
Q psy3209 423 NMLSAFLSSGVMIV-LAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALAS-FLI 500 (567)
Q Consensus 423 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~ 500 (567)
...+..+..+..+. +.+......+.+......+.++.+.. +..........|.+|++.|+++.|+.+...++++ +++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~g 398 (438)
T TIGR00712 320 GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 398 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhc
Confidence 22232222221111 11111111122222222233332211 1111112456799999999999999999988875 689
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 501 NKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 501 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
|.+.|.+.+..|+...+.+.+++.+++.++.....+|.|
T Consensus 399 p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 399 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999988888888888887777777766654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=270.83 Aligned_cols=374 Identities=12% Similarity=0.016 Sum_probs=272.6
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 205 (567)
.+...+..+...+.+|.+.++ ++.++.+.|++.+.+.++..+++++.|+++||+|||+++.++..+.+++.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQM-----MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 334444556677788888888 888999999999999999999999999999999999999999888888776654
Q ss_pred H-----HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 206 F-----AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 206 ~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
+ .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++.+ +|++.|+
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 3 467889999999999998888888899999999999999999999999999999999888765 7999999
Q ss_pred HHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHH
Q psy3209 277 ILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKA 356 (567)
Q Consensus 277 ~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (567)
+.++..++..+..+.+|++++.. ++++ . .. ++....++..+++|..+..
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~--------------~-~~-------------~~~~~~~~~~~~~~~~~~~ 229 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPALPPPP---QPRE--------------H-PL-------------RSLLAGFRFLLASPVVGGI 229 (417)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC---cccc--------------c-ch-------------HHHHHHHHHHHcChHHHHH
Confidence 88877766666666777764210 0000 0 00 0001123445555443322
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHH
Q psy3209 357 LIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVM 434 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 434 (567)
.+..++ .. ....+..+.|.++++. +.. ...+......+++.+++.++.+++.||.++++.+..+.++..++.
T Consensus 230 ~~~~~~-~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 230 ALLGGL-LT-----MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV 303 (417)
T ss_pred HHHHHH-HH-----HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence 221111 11 1234566778888774 333 345566677788899999999999999777777777766666555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 435 IVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
+++.. ..+.+...+..++++.+.+. ..+...++..+.+|++.||+++|+.+...++|..++|.+.|.+.+..|..
T Consensus 304 ~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 304 GLFGL----MPMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred HHHHc----cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 54433 12333444445555554443 23344578899999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q psy3209 515 YMFAFYAICSGINVLFTFFFIFETKGKSFQQI 546 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (567)
..+...+++.++..++.....++.|+++++|.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 88888887777766666677777776655443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=272.34 Aligned_cols=380 Identities=14% Similarity=0.140 Sum_probs=276.2
Q ss_pred HHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH
Q psy3209 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF 197 (567)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 197 (567)
.+..++++.+...++.+..++.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD-----LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 34566678888999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHH
Q psy3209 198 LTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQT 273 (567)
Q Consensus 198 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~ 273 (567)
+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++.+ +||+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876 8999
Q ss_pred HHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHH----------HHhcCCCcc--hHHHHHHH----------
Q psy3209 274 LNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSL----------EWFKGKSQN--ITEELDEI---------- 330 (567)
Q Consensus 274 ~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~---------- 330 (567)
.|++.++++++. ++.++++||+++ .++++.+.....+ ....+...+ ........
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (485)
T TIGR00711 158 IFLINVPIGIIVVVVAFFILPRDKP---AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIA 234 (485)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCccc---cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 999988887664 444455676542 1111111111000 000111110 00000000
Q ss_pred HHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHh
Q psy3209 331 VLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNF 408 (567)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 408 (567)
....+.+.+++....++++++.++...+..+. .....+....+.|.++++..+. .+.+....+..++.+++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 309 (485)
T TIGR00711 235 FVVWELTDDNPLVDLRLFKYRNFTIGCVYMSL-----LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSP 309 (485)
T ss_pred HHHHHHcCCCCccCHHHHcCCChHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111112356666554433222222 1223455667888888775443 4556777778888999999
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHH
Q psy3209 409 ACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI 488 (567)
Q Consensus 409 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 488 (567)
+.|++.||++||+.+..+..+..++..++.+....+.+.+......++.+++.+....+.. ....+.+|+++++++.|+
T Consensus 310 ~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 388 (485)
T TIGR00711 310 IAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSL 388 (485)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHH
Confidence 9999999999999988888777777666552222222334444445566666665454554 566677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 489 ASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 489 ~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
.++.+.+|+.+++.+.+.+.++.
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-30 Score=254.93 Aligned_cols=354 Identities=14% Similarity=0.141 Sum_probs=258.0
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLT 199 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 199 (567)
....++.+..++..+..++.+|.+.++ +|.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQ-----EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467777888999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHH
Q psy3209 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQ---YQTLNI 276 (567)
Q Consensus 200 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~---wr~~f~ 276 (567)
+.+++++++|++.++++|+++|++.+...+.....+.+..++++|++++++++.+..+|..+|+.+++.+. ++...+
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 99999999999999999999999999888888888888899999999999999999999999999988762 222333
Q ss_pred HHHHHHHHHH-HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhH
Q psy3209 277 ILGVIPLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRK 355 (567)
Q Consensus 277 ~~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (567)
..+......+ +.+...++++. ++++..+.++.++++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~ 204 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQA---------------------------------------ENHDSTSIWPMLKLRQARL 204 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCCC---------------------------------------CCCCCCCHHHHHHhcchHH
Confidence 3332222211 22212222100 0001123455666654442
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVM 434 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 434 (567)
.... .+.. ...+.....+.|.++++.+.+ ...+.......+..++++++.+++.||+++|+.+..+..+..++.
T Consensus 205 ~~~~-~~~~----~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 279 (381)
T PRK03633 205 GVNG-CIIS----GIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGS 279 (381)
T ss_pred HHHH-HHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 1111 1111 112334456788888776544 344566667778889999999999999999998887777666655
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 435 IVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
+.+.. .. .......+++.+.. ...|...+.+.|..|+++++...+..+...++|..++|.+.|.+.+..|+.
T Consensus 280 ~~~~~------~~-~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~ 351 (381)
T PRK03633 280 IAMLS------QA-AMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDN 351 (381)
T ss_pred HHHhh------hH-HHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 43321 11 11222333343333 234555577889989888888888888889999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHH
Q psy3209 515 YMFAFYAICSGINVLF 530 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~ 530 (567)
..|.+.+++.++..+.
T Consensus 352 ~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 352 LLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877776655433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=242.95 Aligned_cols=363 Identities=16% Similarity=0.143 Sum_probs=282.8
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 205 (567)
.....+.-.+.+++.+.+.++ +|+|+.|.+++.++..+..++.-++.|.+.||||.|++..+++++..+-++..+
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~-----~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSD-----FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccc-----cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 333334445567777777788 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHH---HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHh----hhhhh---hHHHH
Q psy3209 206 FAQSSY---WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCV----GPYIQ---YQTLN 275 (567)
Q Consensus 206 ~~~~~~---~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l----~~~l~---wr~~f 275 (567)
++.+.+ ++++++++.|++.+ .+.+...+++.||||+++|.++|+.. ..++|..+...+ ....+ |+...
T Consensus 98 ~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 98 FAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred HHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 987555 99999999999955 67999999999999999999999998 666666555444 44447 99988
Q ss_pred HHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccc-ccHHHHhcchhh
Q psy3209 276 IILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK-SGYRELVSNYSY 353 (567)
Q Consensus 276 ~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 353 (567)
.+..+..++ .+..++++.|.|... .+ .++.. ..++.++++++.
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d~p~~r---~~--------------------------------~~~~~~~~~~~v~~~~~~ 220 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMNDVPEHR---AS--------------------------------VKPQLPAQLKAVFSNKDT 220 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhh---cc--------------------------------ccccchhHHHHHhcCcch
Confidence 888877776 455666677765321 00 00001 334556655544
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHH
Q psy3209 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSS 431 (567)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 431 (567)
| .+.+.++..+.++..+..++|.|++++++. .+++.......+.+.+.++++|+++||+|.++.+......+.
T Consensus 221 W-----~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 221 W-----LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA 295 (417)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHH
Confidence 4 456666667778889999999999998876 344577777788899999999999999999999998888888
Q ss_pred HHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 432 GVMIVLAACFYWN---FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 432 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
++..++.+..... .+.+..+..+.....+.+.+...+ +.++..++| ++.|.+.|+...++.+|++.-|...+...
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHH
Confidence 8877776632111 234444444555666667766666 478888887 57899999999999999999999999999
Q ss_pred Hhhc-cchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 509 INFG-LYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 509 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
+..| +...|+++..+.+++.++.+....+
T Consensus 374 ~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 374 DLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 6678888888888887776655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=265.29 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=253.2
Q ss_pred hHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLT 204 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 204 (567)
+.+...++....+..+|.+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEE-----IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHH-----hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence 4556677888888899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHH-Hhhhhh----hhHHHHHHHH
Q psy3209 205 IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL-CVGPYI----QYQTLNIILG 279 (567)
Q Consensus 205 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~-~l~~~l----~wr~~f~~~~ 279 (567)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++ .++..+ +||+.|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888 454443 8999999888
Q ss_pred HHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHH
Q psy3209 280 VIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALI 358 (567)
Q Consensus 280 ~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (567)
++.++ .++.++++||+|+.. +.+.++.. ..++. +.+ + ....++....+...+++++++..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQSC---GLPPAEEM------PNEEP--DGD--A-EKKEEELTKKQIFLQYVLLNKVLWY--- 220 (379)
T ss_pred HHHHHHHHHHheeeCCCcccc---ccCccccC------ccccc--ccc--c-ccccccccchHHHHHHHHhcchHHH---
Confidence 87766 455556677776421 00000000 00000 000 0 0000000111123445555553332
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
+.+..+........+..+.|.++.+..+. .+.+.......++.+++.++.+++.||..+++...............
T Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR00881 221 --ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS 298 (379)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 22222222223456677888888765333 44566677778889999999999999864332222221111111111
Q ss_pred H-HHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy3209 437 L-AACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYY 515 (567)
Q Consensus 437 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~ 515 (567)
+ ........+.+...+..++.+.... +..+....+..|.+|++.|+++.|+.+.+..+|+.++|.+.|.+.+..|+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 299 LLVYWLNPAANPLMDLICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 1 1111111122222333333333222 2333334678999999999999999999999999999999999999988875
Q ss_pred hh
Q psy3209 516 MF 517 (567)
Q Consensus 516 ~~ 517 (567)
.|
T Consensus 378 ~f 379 (379)
T TIGR00881 378 AF 379 (379)
T ss_pred cC
Confidence 43
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-30 Score=263.65 Aligned_cols=376 Identities=16% Similarity=0.136 Sum_probs=264.0
Q ss_pred HhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q psy3209 121 SASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS 200 (567)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 200 (567)
.++++.++..++....++.+|.+.++ +|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+..+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQS-----LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34456777888888889999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 201 SLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 201 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|+
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888765 8999999
Q ss_pred HHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHH---------HhcCCCc--chHHHHHH--------H---HHH
Q psy3209 277 ILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLE---------WFKGKSQ--NITEELDE--------I---VLT 333 (567)
Q Consensus 277 ~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~--------~---~~~ 333 (567)
+..++..+. ++.....|+.+. ++.+.+....... ...+.+. ........ . ..+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTM----QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccc----cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 988776653 334444555431 1112121111000 0011100 00000000 0 000
Q ss_pred hhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHH
Q psy3209 334 TNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACS 411 (567)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g 411 (567)
.....+...+. ++++++.++......++. ..+......+.|.+++...+ . ...+....+..++.+++.++.+
T Consensus 245 ~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 245 ARNNNRALFSL-KLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred HhcCCCCccCH-HHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111222 466766544322222211 12234455667777775333 2 3455666667777888889999
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHH
Q psy3209 412 PLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491 (567)
Q Consensus 412 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 491 (567)
++.||+|+|+++..+..+..+...++.... ...+.+...+...+.+++.+....+. .....+.+|++.++.+.|+.++
T Consensus 319 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 396 (471)
T PRK10504 319 QVVNRFGYRRVLVATTLGLALVSLLFMLVA-LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSM 396 (471)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHH
Confidence 999999999999888877776665554421 11122222233444445555444444 4777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy3209 492 AFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 492 ~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
...+|..+++.+.|.+.+..|+
T Consensus 397 ~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 397 IMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887765
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-30 Score=258.68 Aligned_cols=363 Identities=15% Similarity=0.078 Sum_probs=260.5
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhh-----HHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEK-----VSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFL 198 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 198 (567)
++.++.++..+...+.+|.+.++ +|.+..+ .+++.+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQ-----LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH-----hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 45566677777888899999988 8888654 4889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q psy3209 199 TSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTL 274 (567)
Q Consensus 199 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 274 (567)
++.++++++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.++++.+++.+ +||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999999999999999865 4577778889999999999999999999999998888888765 89999
Q ss_pred HHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhh
Q psy3209 275 NIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSY 353 (567)
Q Consensus 275 f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (567)
|++.+++.++. ++.++++||.++.. + +. + ..+ ..+..+.+++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~---------------~~~--------------~~~~~~~~~~~~~ 220 (408)
T PRK09874 175 FFITASVLFLCFLVTLFCIRENFQPV---S-KK-E---------------MLH--------------MREVVTSLKNPKL 220 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccc---c-ch-h---------------hhH--------------HHHHHHhCcCCch
Confidence 99988877664 44445566653110 0 00 0 000 0011223333333
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-ch----hHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 354 RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IG----RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
+........... ........+.+.+..+..+. .. .+......+++.+++.+..|++.||++||+.+..+..
T Consensus 221 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~ 296 (408)
T PRK09874 221 VLSLFVTTLIIQ----VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALI 296 (408)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 222221111111 11223344556665554332 11 1233344567778888899999999999998888777
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
+..++.+.+.. ..+.+...+..++.+++.+.. .+...+...+..|++++|+.+++.+.+..+|..++|.+.|.+.
T Consensus 297 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 297 FSVLLLIPMSF----VQTPLQLGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHHH----hccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 66555544333 123344444455556655543 3333467778888899999999999999999999999999999
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHhc
Q psy3209 509 INFGLYYMFAFYAICSGINVLFTFFFI 535 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (567)
+..|+...|.+.+++.+++.++.+...
T Consensus 372 ~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 372 ANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888777665543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=255.34 Aligned_cols=339 Identities=16% Similarity=0.163 Sum_probs=249.1
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 205 (567)
.+...+......+.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAAD-----LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 344566777888899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHH
Q psy3209 206 FAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVI 281 (567)
Q Consensus 206 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~ 281 (567)
++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.|++.+++
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888765 899999998887
Q ss_pred HHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHH
Q psy3209 282 PLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIV 360 (567)
Q Consensus 282 ~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (567)
.++. ++.+++.||+++.. ++. + . +.....+++.++++..+...+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~----~~~--------------~--~-------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (385)
T TIGR00710 169 GILLSALIFFILPETLPYE----ARI--------------Q--I-------------STYFETFLLLLKSKMFWGYALIY 215 (385)
T ss_pred HHHHHHHHHHhCCCCCCCc----ccC--------------C--H-------------HHHHHHHHHHHcCchhHHHHHHH
Confidence 7664 44445567764211 000 0 0 00011344556665444322221
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
.. .....+....+.|.++.+..+. ...+.......++.+++.++.+++.||+++|+.+..+..+..++.+++.
T Consensus 216 ~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 216 GA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223345566777777644332 3445666677888999999999999999999988888777766665554
Q ss_pred HHHHhh-hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 439 ACFYWN-FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 439 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
...... ..........++.+.+.+... +.......|..| +.++++.++.+.....++.+.+.+.+.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 291 ITAILGLGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 422211 122223333444555555433 333467788877 678999999998888767666666664443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=258.00 Aligned_cols=356 Identities=19% Similarity=0.257 Sum_probs=264.9
Q ss_pred CCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcccccc
Q psy3209 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ--SSYWLFTSRLLSGIGKGVG 227 (567)
Q Consensus 150 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~~ 227 (567)
.++++++.+.+++.+.++.|+.+++++.|+++||||-|+++..+.++.++++++..++. +++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 35899999999999999999999999999999999999999999999999999998876 4567899999999999999
Q ss_pred ccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhc-ccCCchhHHh
Q psy3209 228 FTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFITFMF-IPETPYFHII 301 (567)
Q Consensus 228 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~-lpesp~~~~~ 301 (567)
+|+...+.+.|.|++||++..++...+..+|.+++.++++.+ ||++.|++.++++++..+++++ ..|+|...
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h-- 223 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH-- 223 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC--
Confidence 999999999999999999999999999999999998888876 8999999999999997666554 57777421
Q ss_pred hcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhh---hhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHh
Q psy3209 302 KDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNE---NMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSY 378 (567)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (567)
... .++|.+.+.....+ +++.+.+++++++++..| .+.+..+....+++.+..|
T Consensus 224 --~~i----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 224 --PNI----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred --CCC----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 110 11122222111111 112467999999988554 4445555555677889999
Q ss_pred hhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcch--------H-HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 379 ASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRK--------T-LNMLSAFLSSGVMIVLAACFYWNFDY 447 (567)
Q Consensus 379 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (567)
.|.|+.+..+. .+.+....+..+...+..+++|.++||+.+| | .-.++....++.++.+.+. ...+.
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~--~~~~~ 358 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT--SDEHR 358 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec--CCCcc
Confidence 99999987665 5677888888999999999999999998652 1 2223333333333333331 11122
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhhHHHHHH
Q psy3209 448 WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI---NFGLYYMFAFYAICS 524 (567)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---~~g~~~~~~~~~~~~ 524 (567)
+..++++.+.....+. ..+..+.-..+.. +++.+..+|+.+.+..+.++++|.+.|.+.. ...|+.+|++.+++.
T Consensus 359 ~~a~~~l~~~~~~~g~-~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~ 436 (466)
T KOG2532|consen 359 LLAVILLTIAIGLSGF-NISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436 (466)
T ss_pred hHHHHHHHHHHHHccc-chhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHH
Confidence 2333333332222222 2222223333434 5889999999999999999999999999983 346889999999988
Q ss_pred HHHHHHHHHh
Q psy3209 525 GINVLFTFFF 534 (567)
Q Consensus 525 ~~~~~~~~~~ 534 (567)
+++.++..++
T Consensus 437 ~~~~i~f~~f 446 (466)
T KOG2532|consen 437 IVGNIIFLFF 446 (466)
T ss_pred HHhchheeEe
Confidence 8887665444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-29 Score=253.98 Aligned_cols=363 Identities=15% Similarity=0.124 Sum_probs=250.0
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLT 199 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 199 (567)
....+..+...+......+.+|.+.++ ++.+..+.++..+++.++++++++++|+++||+|||++++.+.+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRD-----FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 334555666778888999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q psy3209 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLN 275 (567)
Q Consensus 200 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f 275 (567)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|++++.+ |||+.|
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999998876677778899999999999999999999999999998888765 899999
Q ss_pred HHHHHHHHHHHH-HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
++.+++.++.++ .++++||+++. +++ +.+ ......++++++++|.++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~~----~~~--------------~~~--------------~~~~~~~~~~ll~~~~~~ 221 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVKR----GAV--------------PFS--------------AKSVLRDFRNVFRNRLFL 221 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccc----cCC--------------CCC--------------hHHHHHHHHHHHcCHHHH
Confidence 999888776443 45567887421 000 000 000012455677776555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSG 432 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 432 (567)
...+. ........+.+..+.|.++++..+. ...+........+.+++..+.+++.++..+++.......+..+
T Consensus 222 ~~~l~-----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i 296 (413)
T PRK15403 222 TGAAT-----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHH-----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 32222 2222223455667788888876433 3344555556667777777777766554444433333333333
Q ss_pred HHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 433 VMIVLAACF-YWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 433 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
+..++.... ......+..++..++++.+.+...... ........ ...+|++.|+.+.....+..+++...+++.+.
T Consensus 297 g~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~-~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~- 373 (413)
T PRK15403 297 GLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTL-FRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFN- 373 (413)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHH-HHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 333322211 011122223445555566655533333 22222221 12369999999999999999999999988766
Q ss_pred ccchhhhHHHHHHHHH
Q psy3209 512 GLYYMFAFYAICSGIN 527 (567)
Q Consensus 512 g~~~~~~~~~~~~~~~ 527 (567)
+....|...++++.+.
T Consensus 374 ~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 374 GGRLPFHLLAVVAGVI 389 (413)
T ss_pred CCchHHHHHHHHHHHH
Confidence 5555665555544443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-30 Score=254.83 Aligned_cols=346 Identities=12% Similarity=0.028 Sum_probs=257.7
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
.+.+...+..+...+.+|.+..+ ++.+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLA-----GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 45566667777788888988888 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q psy3209 204 TIFAQ-----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTL 274 (567)
Q Consensus 204 ~~~~~-----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 274 (567)
.++++ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ +||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 160 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA 160 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 98888 9999999999999999999999999999999999999999999999999999999888775 89999
Q ss_pred HHHHHHHHHHHHHHhhc--ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchh
Q psy3209 275 NIILGVIPLVFFITFMF--IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYS 352 (567)
Q Consensus 275 f~~~~~~~~~~~~~~~~--lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (567)
|++.++..++..+..++ .||.++. ++++.+ ++. .++....++.++++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~ 211 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAAS---EIQALS----------------NAV----------LRDTREGIKFVLKNPL 211 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCc---cccccc----------------hhH----------HHHHHhHHHHHHcCcH
Confidence 99887766654333333 3333210 000000 000 0001123455666654
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHH-Hhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHH
Q psy3209 353 YRKALIIVLVTSFLQRLSGVSTIL-SYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL 429 (567)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 429 (567)
.+......+.... ...... .+.|.+.++. +.. ...+.......++.+++.++.+++.||.+||+.+..+..+
T Consensus 212 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 286 (365)
T TIGR00900 212 LRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFV 286 (365)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 4432222221111 122233 5677777653 322 3455667777888899999999999999999988877666
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 430 SSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
.+++...+.... + +.+...+..++.+++.+.. .+...++..|.+|++.|+++.|+.+...+++..++|.+.|.+.|
T Consensus 287 ~~~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 287 IGLAILVVGLTP--P-NFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHhhc--h-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555544421 1 2444555566666666653 44445889999999999999999999999999999999999988
Q ss_pred hhc
Q psy3209 510 NFG 512 (567)
Q Consensus 510 ~~g 512 (567)
..|
T Consensus 363 ~~g 365 (365)
T TIGR00900 363 HLG 365 (365)
T ss_pred HcC
Confidence 754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=249.19 Aligned_cols=355 Identities=12% Similarity=0.115 Sum_probs=248.0
Q ss_pred hHHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH-HHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL-TSLVFLTSSL 202 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~ 202 (567)
..+..++..+...+.+|. +.++ +|.+..+.|++.+++.++..+.+++.|+++||+|||+.+++ +..+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEE-----VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 456667777778888886 4567 99999999999999999999999999999999999887654 6666677888
Q ss_pred HHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhH--HHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 203 LTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTL--STMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 203 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
+++++++++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+..+|.++++.+++.+ +||+.|+
T Consensus 80 ~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 80 LFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred HHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 899999999999999999988888888888888999887777654 5677777778888888777665 8999999
Q ss_pred HHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhH
Q psy3209 277 ILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRK 355 (567)
Q Consensus 277 ~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (567)
+.+++.++. ++.++++||.|+.. +++ ....+.++.++++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------------------~~~~~~~~~~~~~~~~~ 203 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSYPRGA---PGA---------------------------------LTRLEVRGLLASRDTRL 203 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCc---ccc---------------------------------cCcchhhhhhcCcchHH
Confidence 998877664 44455688876421 000 00011222344443332
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
.....+. .. ........+.|.++.+..+. ...+..........+++.++.|++.||+++|+.+..+.++..+.
T Consensus 204 ~~~~~~~-~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 204 LFVACTL-MW----GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAF 278 (375)
T ss_pred HHHHHHH-HH----HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2211111 11 11233445567776554332 23344444445566778889999999999999887766554443
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
...+.. ..+.+...+...+.+++.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|+
T Consensus 279 ~~~~~~----~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~ 352 (375)
T TIGR00899 279 YTGLAA----DNSLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY 352 (375)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333222 123344444444455554443 34445778888875 567999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHH
Q psy3209 514 YYMFAFYAICSGINVLFT 531 (567)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~ 531 (567)
...+++.+++.+++.++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 353 HAVYWFAIVMLIVALFCL 370 (375)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 888888888777766654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=251.48 Aligned_cols=358 Identities=13% Similarity=0.104 Sum_probs=252.7
Q ss_pred HHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH
Q psy3209 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF 197 (567)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 197 (567)
.+....+..+..++.....++.+|.++++ +|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.+++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-----~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQA-----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455566788888888999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh------
Q psy3209 198 LTSSLLT---IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY------ 268 (567)
Q Consensus 198 ~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~------ 268 (567)
+++++++ +++++++.++++|+++|+|.|...+....++.|+.|+++|++.+++.+..+.+|..+++.++..
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 4688999999999999999999999999999998877777778899998888888888877532
Q ss_pred ------------------------hhhHHHHHHHHHHH-HHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcc
Q psy3209 269 ------------------------IQYQTLNIILGVIP-LVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQN 322 (567)
Q Consensus 269 ------------------------l~wr~~f~~~~~~~-~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (567)
.+||+.|+....+. ++. ++.+..+||.+. ++.+ +
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~-~--------------- 241 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS-D--------------- 241 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc-c---------------
Confidence 24666665433332 222 222333454321 0000 0
Q ss_pred hHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhh-hhc-cCC-chhHHHHHHH
Q psy3209 323 ITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTL-PEH-HGL-IGRTECLIIF 399 (567)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~ 399 (567)
++......++++++++|.++...+..++ ..........|.+.++ ++. +.+ ...+......
T Consensus 242 ------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~ 304 (438)
T PRK10133 242 ------------AKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_pred ------------ccccchhhhHHHHHhCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 0000111234567777655532222211 1123344555677664 433 322 4456777888
Q ss_pred HHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCCh
Q psy3209 400 SVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPT 479 (567)
Q Consensus 400 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 479 (567)
.++.++++++++++.||+++|+++..+..+..+.+++..+ . . .. ..+..+.+.+++.+..+ |..++...+.+|+
T Consensus 305 ~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~--~-~~-~~~~~~~l~glg~~~i~-P~~~s~a~~~~~~ 378 (438)
T PRK10133 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-A--G-GH-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-c--C-Ch-HHHHHHHHHHHHHHHHH-HHHHHHHHcccch
Confidence 8999999999999999999999888776666554443322 1 1 11 23445566677776644 4446888888774
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHH
Q psy3209 480 NVKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSG 525 (567)
Q Consensus 480 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~ 525 (567)
+.+++.++.. ...+|+.++|.+.|.+.+..| .+..|++..+..+
T Consensus 379 -~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 379 -DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred -hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5778888876 455788999999999999887 5566655444333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=253.68 Aligned_cols=365 Identities=13% Similarity=0.090 Sum_probs=251.8
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
...+..+++.++...+..++...+..+++.+++. ||++++..|++.+.+.+++.+++|+.|+|+|||.||+++.+
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-----fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-----FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-----cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 3345556777788899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q psy3209 193 TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--- 269 (567)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--- 269 (567)
|.++|+++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|..+|++++++++.+..+|..+|.+.+..+
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888776
Q ss_pred --hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHH
Q psy3209 270 --QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRE 346 (567)
Q Consensus 270 --~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (567)
.|||.|++.++++++ .++.+++++|.+| +.+++. .+.+. .........++.+.
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~--------~~~~~-----------~~~~~ts~~kDl~~ 239 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV--------DGENK-----------MVKPFTSVWKDLKV 239 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc--------ccCCc-----------CCCCccchHHHHHH
Confidence 499999999999988 5666677777632 111000 00000 00000111223344
Q ss_pred HhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhh----ccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcch-
Q psy3209 347 LVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE----HHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRK- 420 (567)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~- 420 (567)
+.+++.+....+......+. ...+..|.|.+... .+.. ........+...++.+|.+++|.++||+.++
T Consensus 240 l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~ 314 (493)
T KOG1330|consen 240 LAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIF 314 (493)
T ss_pred HHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhc
Confidence 44444443333333332222 22333344443322 2212 3444666677788999999999999995322
Q ss_pred ------HHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHH
Q psy3209 421 ------TLNMLSAFLS-SGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF 493 (567)
Q Consensus 421 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 493 (567)
+.--+...+. ..+..++..............+.+++++............-+..|++|+++|.++.++...+.
T Consensus 315 ~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~ 394 (493)
T KOG1330|consen 315 PNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFE 394 (493)
T ss_pred ccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHH
Confidence 1111111111 111111111111122233333334444444333333333467889999999999999987765
Q ss_pred H-HHHHHHHHHHHHHHHhh
Q psy3209 494 A-LASFLINKFYKIVQINF 511 (567)
Q Consensus 494 ~-~g~~i~~~i~g~l~~~~ 511 (567)
. +|.+-+|++.|.+.++.
T Consensus 395 h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 395 HIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHhccCCCcceehhHHHHh
Confidence 5 45556676999998865
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=248.99 Aligned_cols=338 Identities=13% Similarity=0.099 Sum_probs=243.8
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 205 (567)
.+...+......|.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||+++..+..+.+++.++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQAD-----LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 333445667778889999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHH
Q psy3209 206 FAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVI 281 (567)
Q Consensus 206 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~ 281 (567)
++++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+ +||+.|++.+++
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999998887787788999999999999998888888888888888777665 899999998888
Q ss_pred HHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHH
Q psy3209 282 PLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVL 361 (567)
Q Consensus 282 ~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (567)
.++..+..++++|+++. +++ ++++.+++++++++.++...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (401)
T PRK11043 170 TLLLILPTLRLKPSKKA----RKQ--------------------------------SQDALTFKQLLKSKTYLGNVLIFA 213 (401)
T ss_pred HHHHHHHHHHcCCCCCc----ccc--------------------------------chHHHHHHHHHcChhHHHHHHHHH
Confidence 77755555555554310 000 001123456666655443322221
Q ss_pred HHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy3209 362 VTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC 440 (567)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 440 (567)
.. ...+..+..+.|.++++.+.+ ...+.......++.++++++.+++.||+++|+..........++.+.+...
T Consensus 214 ~~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 214 AC-----SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HH-----HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122344556778887765544 334455556667788899999999999999887665555554444333222
Q ss_pred HH-hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 441 FY-WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 441 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
.. .....+..++...+.+++.+... +.......+..| +.+|++.|+.+.....++..++.+.|.+.+..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 289 SLLSHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 11 11223333333444555555433 333456667766 57999999999999999999999999887643
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=251.23 Aligned_cols=356 Identities=20% Similarity=0.197 Sum_probs=242.7
Q ss_pred HHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHH-----HHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHH
Q psy3209 127 FIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVAT-----MDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS 201 (567)
Q Consensus 127 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 201 (567)
+.+.++...++...+.+.++.+ .+.++.+.+.+.+. .+++..+++++.|+++||+|||++++++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFF---PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3456666667777777766611 12445556554443 334445789999999999999999999999999999
Q ss_pred HHHHHHhhHH--------HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh-----
Q psy3209 202 LLTIFAQSSY--------WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY----- 268 (567)
Q Consensus 202 ~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----- 268 (567)
+++++++++. .++++|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~ 159 (394)
T TIGR00883 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL 159 (394)
T ss_pred HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998875 478899999999999999999999999999999999999999999999998876543
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccc
Q psy3209 269 -------IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK 341 (567)
Q Consensus 269 -------l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (567)
.+||+.|++.+++.++..+....+||+|++. .++ +++++..
T Consensus 160 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------------------~~~~~~~ 207 (394)
T TIGR00883 160 GDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE-KAQ-------------------------------EKHKKKR 207 (394)
T ss_pred CHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH-HHH-------------------------------hcccccc
Confidence 3799999987777666555555667765322 000 0011122
Q ss_pred ccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy3209 342 SGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGR 419 (567)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 419 (567)
.+.++.++++. +.... .....+......+....+.|.++++..+. ...+.......+..+++.++.+++.||++|
T Consensus 208 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 284 (394)
T TIGR00883 208 GPIRETLTKHR--KPFLL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR 284 (394)
T ss_pred CCHHHHHHhch--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34555555432 11111 22222222334556677888888654432 344556667778889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH-HHHHHHHHH
Q psy3209 420 KTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASF 498 (567)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~ 498 (567)
|+.+.....+..+....+........+.+......++.+++.+....+ ..++..|.+|++.|+++.++. +....+|..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 363 (394)
T TIGR00883 285 RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGP-MGSFLPELFPTEVRYTGASLAYNLAGAIFGG 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCccceeeEeeehhHhHHHHHhh
Confidence 997775554444333222111111223333444445555555444444 458999999999999999985 455668888
Q ss_pred HHHHHHHHHHHhhc-cchhhhHHH
Q psy3209 499 LINKFYKIVQINFG-LYYMFAFYA 521 (567)
Q Consensus 499 i~~~i~g~l~~~~g-~~~~~~~~~ 521 (567)
++|.+.|.+.+..| +...++..+
T Consensus 364 ~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 364 FAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHHHHHHHHHcCcchhHHHHHH
Confidence 99999999999888 554444333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=243.78 Aligned_cols=338 Identities=24% Similarity=0.294 Sum_probs=278.3
Q ss_pred hhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS 201 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 201 (567)
..+..+...+......+.+|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+.+.++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~ 78 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED-----LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGS 78 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 3455677778888888999999988 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy3209 202 LLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNII 277 (567)
Q Consensus 202 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~ 277 (567)
+++.++++++.++++|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+ +||+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 79 LLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred HHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888876 69999999
Q ss_pred HHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHH
Q psy3209 278 LGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKAL 357 (567)
Q Consensus 278 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (567)
.+++.++..+...+++ |..+
T Consensus 159 ~~~~~~~~~~~~~~~~---------------------------------------------------------~~~~--- 178 (352)
T cd06174 159 LAILGLLLALLLLFLL---------------------------------------------------------RLLL--- 178 (352)
T ss_pred HHHHHHHHHHHHHHHH---------------------------------------------------------HHHH---
Confidence 8887776544443321 1111
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchH-HHHHHHHHHHHHH
Q psy3209 358 IIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKT-LNMLSAFLSSGVM 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~ 434 (567)
...+..+...........+.+.++.+. +.. .+.+.......++.+++.++.+++.||+++|+ .+..+..+..++.
T Consensus 179 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (352)
T cd06174 179 --LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGL 256 (352)
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 122222222334566677888888775 322 45567777888999999999999999999999 8888888877777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 435 IVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
+.+... .+.+...+..++.+.+.+.. .+....+..|.+|+++|++..|+.+....++..++|.+.+.+.+..++.
T Consensus 257 ~~~~~~----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~ 331 (352)
T cd06174 257 LLLALA----PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331 (352)
T ss_pred HHHHHh----ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 666552 23455555666677766654 4455689999999999999999999999999999999999999988999
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy3209 515 YMFAFYAICSGINVLFT 531 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~~ 531 (567)
..+.+.+++.+++.++.
T Consensus 332 ~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 332 GVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 88998888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=249.64 Aligned_cols=345 Identities=18% Similarity=0.228 Sum_probs=239.5
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
+..+..........+.+|.+.++ +|.+..+.++..+.+.++..+++++.|+++||+|||++++++.++++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAAD-----LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34444555555666889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHH
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILG 279 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 279 (567)
+.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|.+++|.+++.+ +||+.|++.+
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 999999999999999999999988899999999999999999999999999889988888887765 8999999988
Q ss_pred HHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHH
Q psy3209 280 VIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALI 358 (567)
Q Consensus 280 ~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (567)
+++++. ++..+++||++.. +++. +. ......++.++++.++....
T Consensus 165 ~~~~i~~~~~~~~~~~~~~~----~~~~-------------~~-----------------~~~~~~~~~~~~~~~~~~~~ 210 (392)
T PRK10473 165 AMGILVLLLSLFILKETRPA----RAPA-------------AS-----------------SKPRENSESLLNRFFLSRLV 210 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCc----ccCC-------------cc-----------------chHHHHHHHHhCHHHHHHHH
Confidence 877664 4445567776421 0000 00 00011234455544443332
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
...+... ....+..+.|.++.+..+ . ...+......+++.+++.++.+++.||+++|+.+..+..+..++.++
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 285 (392)
T PRK10473 211 ITTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT 285 (392)
T ss_pred HHHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2221111 122344455666654433 2 33455666778888999999999999999999988888777766665
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q psy3209 437 LAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYM 516 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~ 516 (567)
+.... ..+.......+...+.+.++.. ....+..|.++|+ |.......++..+++.+.+.+.+..|+...
T Consensus 286 ~~~~~----~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~ 355 (392)
T PRK10473 286 LALSP----SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAW 355 (392)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 55422 1222233333333333333222 2233344444332 344445567777778888888887787644
Q ss_pred hhHHHH
Q psy3209 517 FAFYAI 522 (567)
Q Consensus 517 ~~~~~~ 522 (567)
..+.+.
T Consensus 356 ~~~~~~ 361 (392)
T PRK10473 356 NMLIGI 361 (392)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.57 Aligned_cols=376 Identities=17% Similarity=0.129 Sum_probs=252.5
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchh-hhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPS-VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
+..+.++..++...+....+...++ +.+-.+.+| .+....+.+.+.++|+++++++++++|.|.||++-.+.+.
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed-----l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~ 115 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED-----LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLS 115 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc-----cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHH
Confidence 3334455555555566666554443 345556666 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 269 (567)
...+++++..++....+|++.+++.|++.|+.+++.+|....+++.||.+++|++.++++.+...+|.++|++++..+
T Consensus 116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 999999999999988999999999999999999999999999999999999999999999999999999999988772
Q ss_pred --------hhHHHHHHHHHHHHH-HHHHhhcccCCch--hHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhh
Q psy3209 270 --------QYQTLNIILGVIPLV-FFITFMFIPETPY--FHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENM 338 (567)
Q Consensus 270 --------~wr~~f~~~~~~~~~-~~~~~~~lpesp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (567)
||||.|++.++++++ .++.++++|+.|. +. .++.+++-..+..++.... ...++
T Consensus 196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~~~ek~~~~~~~~~~~~~--------------~~~~~ 260 (495)
T KOG2533|consen 196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LTDEEKELVVERLRESPSG--------------GIENK 260 (495)
T ss_pred hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc-cchHHHHHHHHHHHhccCC--------------Ccccc
Confidence 899999999999988 5667778999986 22 1111111111111111110 01111
Q ss_pred cccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhcc-CC-chhHHHHHHHHHHHHHHHhhHHHHHhh
Q psy3209 339 KNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH-GL-IGRTECLIIFSVLLVVTNFACSPLVDI 416 (567)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr 416 (567)
.+...+++.+++|..+. +.+..++.....+.+.+|+|.++.+.. .+ .++....++..++++++.+++|+++||
T Consensus 261 ~~~~~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 261 FKWKGFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred cCHHHHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 34456777888775553 444444444456788999999999833 32 566788889999999999999999999
Q ss_pred ----hcchHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChh-hHHHHHHHHH
Q psy3209 417 ----AGRKTLNMLSAFLSSGVM-IVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN-VKSSAASIAS 490 (567)
Q Consensus 417 ----~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~ 490 (567)
..+|........+..+.. +.+.. ......... .++.+........+......++....+ ++-+..++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i 410 (495)
T KOG2533|consen 336 LKTIFARRLLFIVFLCLYAIIGAISLLA----AAVLPGAYG-AFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII 410 (495)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHh----hccchHHhH-HHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence 455554444444433333 22222 111111111 111111111112223334455544433 4444455555
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhccchhhh
Q psy3209 491 IAFALASFLINKFYKI-VQINFGLYYMFA 518 (567)
Q Consensus 491 ~~~~~g~~i~~~i~g~-l~~~~g~~~~~~ 518 (567)
...+.+++++|.+... ....+++...|.
T Consensus 411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f~ 439 (495)
T KOG2533|consen 411 DGTGSAGAISGQLFRSLDAPRYGWGAVFY 439 (495)
T ss_pred cchhHHHHhhhhhcccccCcchhhhhHHH
Confidence 5566666666655433 233345666663
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=248.36 Aligned_cols=356 Identities=13% Similarity=0.068 Sum_probs=243.3
Q ss_pred chhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---H-HhhH
Q psy3209 135 WPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI---F-AQSS 210 (567)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~ 210 (567)
...+.++.+.++ +|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+++++++++. + .+++
T Consensus 31 ~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (402)
T TIGR00897 31 LEQGWLSPFLKA-----LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANY 105 (402)
T ss_pred hHHHhHHHHHHH-----hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccH
Confidence 333455666677 899999999999999999999999999999999999999999999999887653 3 2578
Q ss_pred HHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH-HHHHHhhhhh----hhHHHHHHHHHHHHH-
Q psy3209 211 YWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI-LFSLCVGPYI----QYQTLNIILGVIPLV- 284 (567)
Q Consensus 211 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~l----~wr~~f~~~~~~~~~- 284 (567)
+.+++.|+++|++.+...+...+.+.+++|+++|++++++.+.+..+|. ++++.+++.+ ||+..+|......++
T Consensus 106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 8889999999999988878888889999999999999999999999986 5788777653 766555544333333
Q ss_pred HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHH
Q psy3209 285 FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTS 364 (567)
Q Consensus 285 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (567)
.++..++.++.++. .++++ +. +. .+....++.++++|..+...+.
T Consensus 186 ~~~~~~~~~~~~~~--~~~~~--------------~~----~~----------~~~~~~~~~~~~~~~~~~~~~~----- 230 (402)
T TIGR00897 186 GVIALFSNKDIFTP--QHMQT--------------RE----KF----------SELGKAATILFTNPNVLLGGMV----- 230 (402)
T ss_pred HHHHHhccCCCCCc--ccccC--------------Cc----ch----------hhHHHHHHHHHcChhHHHHHHH-----
Confidence 22333344443210 00000 00 00 0001124456666544322221
Q ss_pred HHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHH-HHHHHHHHHHHHHHHHHH
Q psy3209 365 FLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNM-LSAFLSSGVMIVLAACFY 442 (567)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~~~~ 442 (567)
.+......+.+..|.|.++++.+.+ .+.+.......++.+++.++.|+++||++||+.+. .+.+...++...+.....
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234566778889888775544 33445556677889999999999999999887654 223333333222222111
Q ss_pred -hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHH
Q psy3209 443 -WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYA 521 (567)
Q Consensus 443 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~ 521 (567)
...+.+...+..++++.+.+. ..+.. ....|..| ++|+++.|+.+....+++.++|.+.|.+.+..|+...+++.+
T Consensus 311 ~~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a 387 (402)
T TIGR00897 311 HFGHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFA 387 (402)
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 112233344445555555443 34443 45667655 689999999999999999999999999999999988999888
Q ss_pred HHHHHHHHHHHH
Q psy3209 522 ICSGINVLFTFF 533 (567)
Q Consensus 522 ~~~~~~~~~~~~ 533 (567)
++.+++.++..+
T Consensus 388 ~~~~i~~~~~~~ 399 (402)
T TIGR00897 388 ALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHH
Confidence 887777666543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=250.73 Aligned_cols=341 Identities=21% Similarity=0.274 Sum_probs=249.3
Q ss_pred hhhHHHhhhhccchhhhhh-hhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHH
Q psy3209 123 SLPIFIVGCWLTWPSVALY-KWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS 201 (567)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~-~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 201 (567)
+++.+...+......+.+| .+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEE-----LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCC-----STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence 3556777777888889999 88888 99999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy3209 202 LLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNII 277 (567)
Q Consensus 202 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~ 277 (567)
+++.+++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ +||+.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 77777788889999999999999999999999999999999999999999999999999999998876 79999999
Q ss_pred HHHHHHHHHH-HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccc-cHHHHhcchhhhH
Q psy3209 278 LGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS-GYRELVSNYSYRK 355 (567)
Q Consensus 278 ~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 355 (567)
.+++.++..+ ...+++++|+....+++++++ +++++... .++.+.+++..+
T Consensus 157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~- 209 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLW- 209 (352)
T ss_dssp HHHHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCH-
T ss_pred ccchhhhhhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhh-
Confidence 9998887544 334555543211000000000 00011111 244555554443
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCc---hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLI---GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSG 432 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 432 (567)
..+...+.. .........+.|.++.+..+.. ..+.......+..+++.++.+++.||+++++..........+
T Consensus 210 ~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 210 ILLIAFFLF----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL 285 (352)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhHH----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 111122221 1234457778888755443322 334456677788888899999999999998777776666666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy3209 433 VMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLIN 501 (567)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 501 (567)
..+.+...... .+....++..++.+++.+.. .+....+..+.+|++++|++.|+.+...++++.++|
T Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 286 GALGLLLLPFS-SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCSHHH-CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55554442221 23344444556666666654 444468999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=244.01 Aligned_cols=365 Identities=14% Similarity=0.093 Sum_probs=248.2
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
++.++..+........++.+..+ ++.+..+.+++.+++.+++.++++++|+++||+|||++++++.+++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKE-----LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 44455555444445555666777 8999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHH
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGV 280 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~ 280 (567)
++++.+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~ 161 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCAL 161 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887764 78899999999999999999999999999999999999999999999999999887 45555555544
Q ss_pred HHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHH
Q psy3209 281 IPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIV 360 (567)
Q Consensus 281 ~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (567)
..++.++..+++||+|... ++++.+. .....+. ...++.+++++..+......
T Consensus 162 ~~~~~~~~~~~l~~~~~~~---~~~~~~~--------------~~~~~~~----------~~~~~~l~~~~~~~~~~~~~ 214 (393)
T PRK11195 162 IYLLAALFNLFIPRLGARR---PGQSWNP--------------IALLRDF----------FHACRVLWRDKLGRFSLAGT 214 (393)
T ss_pred HHHHHHHHHhcCCCCcccc---cccCCCH--------------HHHHHHH----------HHHHHHHHhCchhHHHHHHH
Confidence 4444445556788875321 0000000 0000000 01234556665444322222
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
.+.... ........+.++++..+. ...+......+++.++++++.+++.||.++++.+..+. +.++..+.+.
T Consensus 215 ~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~ 288 (393)
T PRK11195 215 TLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMA 288 (393)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHH
Confidence 111111 122233334444433322 45667777888899999999999999988887776664 3333222222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q psy3209 439 ACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNV-KSSAASIASIAFALASFLINKFYKIVQINFGLYYMF 517 (567)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~ 517 (567)
. ..+.+...+..++.+++.+....+.. +...+..|++. +|.+.++.+..++++..++..+.+.+ +..|....+
T Consensus 289 ~----~~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (393)
T PRK11195 289 L----QHSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVA 362 (393)
T ss_pred H----HhHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence 2 22344444455566666555444444 66777766544 79999999999999999999998855 677888777
Q ss_pred hHHHHHHHHHHHHHHHhc
Q psy3209 518 AFYAICSGINVLFTFFFI 535 (567)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~ 535 (567)
.+.+...+++..+.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 363 VIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776665556555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=251.59 Aligned_cols=381 Identities=13% Similarity=0.077 Sum_probs=259.5
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc--
Q psy3209 107 RQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-- 184 (567)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-- 184 (567)
+.++..+++...++.+ .+..++.....++.+|...++ .|.+..+++.+ +.....+ ++.+++|+++||+
T Consensus 5 ~l~~~~~~~~~~~~~l---~~~~gl~~~~~~~~l~~~l~~-----~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~ 74 (491)
T PRK11010 5 YLRIFQQPNSAILLIL---GFASGLPLALTSGTLQAWMTV-----ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTP 74 (491)
T ss_pred HHHHHcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-----CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccc
Confidence 4455556665554443 455666667888889999888 89999999986 4444444 6899999999999
Q ss_pred ---chhHH-HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHH
Q psy3209 185 ---GRKNT-LLLTSLVFLTSSLLTIFA---QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYG 257 (567)
Q Consensus 185 ---Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 257 (567)
|||+. ++++.++.+++.+++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+
T Consensus 75 ~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l 154 (491)
T PRK11010 75 PFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL 154 (491)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 99885 667888887888888775 47888999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHH
Q psy3209 258 GILFSLCVGPYI-----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVL 332 (567)
Q Consensus 258 G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (567)
|.++++.++..+ |||..|++.+++.++..+..+++||+++.. .++++ .
T Consensus 155 G~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~---------------~-------- 207 (491)
T PRK11010 155 AMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKT---------------L-------- 207 (491)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccc---------------h--------
Confidence 998888666543 799999999888777655555678864210 00000 0
Q ss_pred HhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhh-ccCC-chhHHHH-HHHHHHHHHHHhh
Q psy3209 333 TTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE-HHGL-IGRTECL-IIFSVLLVVTNFA 409 (567)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~ 409 (567)
+.....++++.++++..+...... ++.. ........+.+.++.+ .+.+ .+.+... ....++.+++.++
T Consensus 208 ----~~~~~~~l~~~~~~~~~~~~ll~~-~l~~----~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll 278 (491)
T PRK11010 208 ----EQAVVAPLRDFFGRNNAWLILLLI-VLYK----LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALY 278 (491)
T ss_pred ----hhhHHHHHHHHHcCcCHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012345566554433222221 1111 1223334456666544 3333 3334443 3445688899999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH
Q psy3209 410 CSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA 489 (567)
Q Consensus 410 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 489 (567)
+|+++||+++|+.+.++.++..+..+.+........+.+......++..++.+++.... +++..+..+++.+++..|+.
T Consensus 279 ~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~ 357 (491)
T PRK11010 279 GGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALL 357 (491)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHH
Confidence 99999999998877766655555443332211111222222223333222333333333 47788888988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 490 SIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 490 ~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
+....+|..+++.+.|.+.+..||...|.+.+++++++.++....
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888887776665443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=242.02 Aligned_cols=330 Identities=17% Similarity=0.206 Sum_probs=233.9
Q ss_pred hccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3209 132 WLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211 (567)
Q Consensus 132 ~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 211 (567)
......|.+|.+.++ +|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++
T Consensus 6 ~~~~~~p~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (377)
T PRK11102 6 AIDMYLPALPVIAAD-----FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID 80 (377)
T ss_pred HHHHHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 445567889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHH-H
Q psy3209 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVF-F 286 (567)
Q Consensus 212 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~-~ 286 (567)
.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||+.|++.+++.++. +
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999999999999999999998887765 8999999888877664 4
Q ss_pred HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHH
Q psy3209 287 ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFL 366 (567)
Q Consensus 287 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (567)
+..+++||+++.. +++ +.+.+ +...++++.++++..+... +...
T Consensus 161 ~~~~~~~~~~~~~---~~~--------------~~~~~--------------~~~~~~~~~~~~~~~~~~~-----~~~~ 204 (377)
T PRK11102 161 LVFFFIPETLPKE---RRQ--------------PFHLR--------------TTIRNFASLFRHKRVLGYM-----LASG 204 (377)
T ss_pred HHHHhCCccCccc---ccC--------------CCChH--------------HHHHHHHHHHcChHHHHHH-----HHHH
Confidence 4556677764210 000 00000 0011334556654433211 1122
Q ss_pred HHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 367 QRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
..+.+.+.+..+.|.++.+..+ . .+.+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+......+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD 284 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223345555666766655433 3 4455667777888999999999999999999988887766544433333221112
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHH-HHHHHHHHHH
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFA-LASFLINKFY 504 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~i~ 504 (567)
...+...+...++..+.+.. .+....+..|..| +.++++.++.+.... ++..+++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333333332 2222356677777 789999998877654 5555555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=242.80 Aligned_cols=340 Identities=14% Similarity=0.106 Sum_probs=248.7
Q ss_pred HHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHH
Q psy3209 119 AFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFL 198 (567)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 198 (567)
.+.++...+..++..+..++.+|.++++ +|++..+.|++.+.+++++.+++++.|++.||+|||+++++++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-----~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-----FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4456677888899999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------
Q psy3209 199 TSSLLTIF---AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI------ 269 (567)
Q Consensus 199 i~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------ 269 (567)
++.+++.. .++++.+++.|++.|+|.|...+....++.++.|+++|++.+++.+....+|..+++.++..+
T Consensus 80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~ 159 (410)
T TIGR00885 80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLP 159 (410)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99988654 358999999999999999999999999999999999999999999999999998888776544
Q ss_pred ------------------------hhHHHHHHHHHHHHHHHHHhhc--ccCCchhHHhhcCcHHHHHHHHHHhcCCCcch
Q psy3209 270 ------------------------QYQTLNIILGVIPLVFFITFMF--IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNI 323 (567)
Q Consensus 270 ------------------------~wr~~f~~~~~~~~~~~~~~~~--lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (567)
+||+.|++.+++.++..+.+.+ +||.++ ++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~~--~--------------- 216 (410)
T TIGR00885 160 HQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------SD--A--------------- 216 (410)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------cc--c---------------
Confidence 4999999888877664433333 343210 00 0
Q ss_pred HHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCch---hHHHHHHHH
Q psy3209 324 TEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIG---RTECLIIFS 400 (567)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 400 (567)
++.....+.++++++|.++...+ ..++ ..........|++.+..+.....+ .........
T Consensus 217 ------------~~~~~~~~~~~~~~~~~~~~~~l-~~f~----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~ 279 (410)
T TIGR00885 217 ------------KQISFSASLSRLARIRHYREGVI-AQFF----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAM 279 (410)
T ss_pred ------------ccccchhhHHHHHhChhHHHHHH-HHHH----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 00001113345566654443221 1112 222334456778888765432211 122344445
Q ss_pred HHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChh
Q psy3209 401 VLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN 480 (567)
Q Consensus 401 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 480 (567)
.+..+|+++++++.||+++|+.+.+...+..+..++.... +.......+.+.+++.+..+ |..++...+..+++
T Consensus 280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~ 353 (410)
T TIGR00885 280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----GGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQD 353 (410)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh
Confidence 6778999999999999999998877776666665554441 12233455556666666555 66678999998866
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 481 VKSSAASIASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 481 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
.+..+.++.... +|++++|.+.|.+.|..
T Consensus 354 ~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 354 TKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 554455555443 99999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=242.31 Aligned_cols=345 Identities=12% Similarity=0.080 Sum_probs=239.6
Q ss_pred cchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy3209 134 TWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYW 212 (567)
Q Consensus 134 ~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (567)
....+.+|. +.++ +|.+..+.|++.+.+.++..+.+++.|+++||+|||++++++.++.+++.++++++++++.
T Consensus 27 ~~~~~~~~~~~~~~-----~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (400)
T PRK11646 27 FVVFPLISIRFVDQ-----LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWL 101 (400)
T ss_pred HHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 334455443 4566 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHH-HHH
Q psy3209 213 LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGVIPLVF-FIT 288 (567)
Q Consensus 213 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~~-~~~ 288 (567)
+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+ +||+.|++.++..++. ++.
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888899999999999999999999999999999999888876 8999999988776653 333
Q ss_pred hhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHH
Q psy3209 289 FMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQR 368 (567)
Q Consensus 289 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (567)
.+++||.+. ++. . .+...+++++++++.++...+..... +
T Consensus 182 ~~~~~~~~~----~~~-------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 221 (400)
T PRK11646 182 AWLLPAYKL----STV-------------------R-------------TPVREGMTRVLRDKRFVTYVLTLTGY-Y--- 221 (400)
T ss_pred HHhCCcccc----ccc-------------------c-------------hhhHHHHHHHHcCchHHHHHHHHHHH-H---
Confidence 445555310 000 0 00011345566665444222211111 1
Q ss_pred hhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 369 LSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLV-DIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
........+.|.++++.++. ...+......++....+....+++. ||++.++.+..+..+.+++.+++... ++
T Consensus 222 -~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----~~ 296 (400)
T PRK11646 222 -MLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----SN 296 (400)
T ss_pred -HHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----hh
Confidence 11122345778888776554 3334444444554544444445555 45665666666666666555444331 12
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhhHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG----LYYMFAFYAI 522 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g----~~~~~~~~~~ 522 (567)
.+...+..++++.+.+.. .+...++..+..|++.||++.|+.+....+|..++|.+.|.+.+..+ ....++..++
T Consensus 297 ~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~ 375 (400)
T PRK11646 297 LQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI 375 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence 333333344455554433 34445788899999999999999999999999999999999998753 2334444444
Q ss_pred HHHHHHH
Q psy3209 523 CSGINVL 529 (567)
Q Consensus 523 ~~~~~~~ 529 (567)
+.+++.+
T Consensus 376 ~~~~~~~ 382 (400)
T PRK11646 376 IGLITLL 382 (400)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-27 Score=238.46 Aligned_cols=338 Identities=16% Similarity=0.180 Sum_probs=237.6
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
+..+...+......+.+|.+.++ +|.++.+.+++.+++.+++.++++++|+++||+|||+++.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARD-----LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33334456666777889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHH
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILG 279 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~ 279 (567)
+.++++++.+++.|++.|++.+...+....+..|.+++++++++.++.+.+..+|..++|.+++.+ +||+.|++.+
T Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 90 ALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 999999999999999999999888788888899999999999999999999999988888887765 8999999988
Q ss_pred HHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHH
Q psy3209 280 VIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALI 358 (567)
Q Consensus 280 ~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (567)
+..++. ++..+++||+++.. +++ .+....+++.++++.++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 214 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPAD----ARR-------------------------------TRVLASYRTLLSNRRFNCYLL 214 (394)
T ss_pred HHHHHHHHHHHHhCCccCccc----cch-------------------------------hHHHHHHHHHHcChHHHHHHH
Confidence 776653 44455678864210 000 001123445566655443322
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
..+.. +.+...+..+.+.++++..+ + ...+.......++.+++..+.+++.||.+++... ......++.+.
T Consensus 215 ~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~ 287 (394)
T PRK11652 215 MLIGT-----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLL 287 (394)
T ss_pred HHHHH-----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 22111 12233444555666666433 2 2334445555667777888888888888733322 22222222222
Q ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 437 LAACFYW-NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN 510 (567)
Q Consensus 437 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~ 510 (567)
+...... ..+.+......++.+++.+.. .+...++..|.+| ++++++.++.+....+|+.+++.+.+.+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 288 MWIPGWFGVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 2111111 113344444555566666653 3444577888887 6789999999999999999999998877544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=239.86 Aligned_cols=357 Identities=11% Similarity=0.048 Sum_probs=250.0
Q ss_pred hHHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
..++.........+.+|. +.++ +|++..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQ-----YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 344445555555666554 4456 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHH
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGV 280 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~ 280 (567)
.+++++++.++++|++.|.+.+...+...++..|.+|+++|++++++......+|.+++|.+++.+ +|+..|++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~ 169 (395)
T PRK10054 90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAI 169 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 999999999999999999887877888889999999999999999999999999999999998886 89999998887
Q ss_pred HHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHH
Q psy3209 281 IPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALII 359 (567)
Q Consensus 281 ~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (567)
..++. ++..+++||.++ +++++ . ++..+.++.++++.++...+.
T Consensus 170 ~~~i~~i~~~~~~~~~~~----~~~~~-----------------~--------------~~~~~~~~~~~~~~~~~~~~~ 214 (395)
T PRK10054 170 CSAFPLVFIQIWVQRSEK----AIATE-----------------T--------------GSVWSPSVLLQDKALLWFTCS 214 (395)
T ss_pred HHHHHHHHHHHHHhcccc----ccccc-----------------h--------------hhhhhhhhhccCceehHHHHH
Confidence 77664 334444555421 00000 0 000112445666555443333
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhhhhc---cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHH
Q psy3209 360 VLVTSFLQRLSGVSTILSYASTTLPEH---HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 435 (567)
.++.... ...+..+.+.++... +.. ...+.......+.........+++.||.++|+.+..+..+..++..
T Consensus 215 ~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 289 (395)
T PRK10054 215 GFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLV 289 (395)
T ss_pred HHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 2222221 112222333333222 111 1223344444455556667788999999999988888777766665
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy3209 436 VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYY 515 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~ 515 (567)
.+... ..+.+...+...+++.+... ..|.....+.+..|++.+++..+..+ ...+|..+||.+.|.+.|..|...
T Consensus 290 ~~~~~---~~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~ 364 (395)
T PRK10054 290 GFIFS---GNSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWS 364 (395)
T ss_pred HHHHc---chHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhh
Confidence 55431 12333334445555555443 34454578889999999999988765 677999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHH
Q psy3209 516 MFAFYAICSGINVLFT 531 (567)
Q Consensus 516 ~~~~~~~~~~~~~~~~ 531 (567)
.|++.+++..++.++.
T Consensus 365 ~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 365 LFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666655554444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=232.73 Aligned_cols=356 Identities=13% Similarity=0.079 Sum_probs=228.2
Q ss_pred HHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHH-HHHhhhhhhhhhhcccchhHHH-HHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDL-GNILSPIPSGYIMDKFGRKNTL-LLTSLVFLTSSL 202 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~ 202 (567)
.+..++......|.+|. +.++ +|.+..+.|++.+.+.+ ++.++++++++ +||+|||+.+ ..+.++.+++.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDE-----VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 44555555556676666 4566 99999999999876544 66666666666 9999999875 456666678888
Q ss_pred HHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcc--hhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 203 LTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIR--GTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 203 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
+.+++++++.+++.+.+.|...+...|....++.++.++++| +...++.+.+..+|.+++|.+++.+ |||+.|+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 889999999887766555544556678888888888876655 3455788888888888888888765 9999999
Q ss_pred HHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhH
Q psy3209 277 ILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRK 355 (567)
Q Consensus 277 ~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (567)
+.++.+++. ++.++++||.++.. ++. . . + .... .++++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~------------~-------------~-----~~~~---~~~~~~~~ 219 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPSMRKEL----PLA-T------------G-------------T-----LEAP---RRNRRDTL 219 (393)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCC----ccc-c------------c-------------c-----cccc---ccccccHH
Confidence 988877764 44455678864210 000 0 0 0 0000 01111111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
..+..... .+.....+..+.|.++++..+. ...+.......+..+++.++.|+++||+++|+.+..+.....+.
T Consensus 220 ---~~~~~~~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 220 ---LLFVICTL-MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred ---HHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 11111111 1122344556788777654433 23344444555667788999999999999998777665544433
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
...+.. ..+.+..++...+.+++.+...... ..+..|.+|+ .++++.++.+...++|..++|.+.|.+.+..|+
T Consensus 296 ~~~~~~----~~~~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~ 369 (393)
T PRK15011 296 YAGMLM----AHSPAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY 369 (393)
T ss_pred HHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322211 1223333333333333333322222 3667888885 599999999999999999999999999999899
Q ss_pred chhhhHHHHHHHHHHHHHHHhcc
Q psy3209 514 YYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
...+.+.+++.+++.++. ++.|
T Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~ 391 (393)
T PRK15011 370 HAVFWFALVMIIATLFCL-LRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhhc
Confidence 888877777666655544 3434
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=230.19 Aligned_cols=355 Identities=13% Similarity=0.083 Sum_probs=256.3
Q ss_pred hhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHH----HHHHHHHH
Q psy3209 123 SLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTL----LLTSLVFL 198 (567)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~ 198 (567)
.+..+...+..+...|.+|.+.++ +|.+..++|++.+++.++..++++++|+++||+|||... .++..+..
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~-----~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKG-----IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 345666667778888999999999 999999999999999999999999999999999985433 22222222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q psy3209 199 TSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTL 274 (567)
Q Consensus 199 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~ 274 (567)
+ ..+.++++++.+++.|+++|.+.+...|...++..++ +++|++..+......++|.+++|.+++.+ |||..
T Consensus 85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~ 160 (382)
T TIGR00902 85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI 160 (382)
T ss_pred H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 2 3445678999999999999999888888888887664 46789999999999999999999887776 89999
Q ss_pred HHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 275 NIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 275 f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
|++.++..++.++.+ .++|+++ .+++++ +++.+...++++++++|+++
T Consensus 161 f~~~~~~~~~~~~~~-~~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~~l~~~~~~ 208 (382)
T TIGR00902 161 LAILTAGLAFMLIGF-LIKPTIP---PKDAIP----------------------------EDESQGDSAFIALLKNPMNL 208 (382)
T ss_pred HHHHHHHHHHHHHHH-HcCCCCC---CCcccc----------------------------ccccccchhHHHHHcChHHH
Confidence 988765533333333 3333311 000000 00001122456777876555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
...+..++ .......+..+.|.++++.+.+ ...+.......+..+++.++.+++.||++.|+.+.++.++..+.
T Consensus 209 ~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 209 RFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHH
Confidence 43332222 1223455667888888876554 34556666677888899999999999999999999888888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI-AFALASFLINKFYKIVQINFG 512 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~~g 512 (567)
..++.. .++.+..+...++.+++++...... ..++.+. |+++++++.++.+. ...+|..++|.+.|.+.|..|
T Consensus 284 ~~~~~~----~~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 284 WAIIGA----IEAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHh----HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776654 2345556666777777777655554 4788888 98999999999864 567999999999999999998
Q ss_pred cchhhhHHHHHHHHHHHH
Q psy3209 513 LYYMFAFYAICSGINVLF 530 (567)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~ 530 (567)
. ..|++.+++.+++.++
T Consensus 358 ~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred H-HHHHHHHHHHHHHHHH
Confidence 6 5677777777665433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=230.84 Aligned_cols=329 Identities=12% Similarity=0.103 Sum_probs=235.3
Q ss_pred hccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3209 132 WLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211 (567)
Q Consensus 132 ~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 211 (567)
.....++.+|.+.++ +|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++
T Consensus 15 ~~~~~~~~lp~l~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 15 ALTSVGPLLPQIRSA-----LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred ccccCcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 335678899999999 99999999999999999999999999999999999999999999998888887 788999
Q ss_pred HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHH
Q psy3209 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI------QYQTLNIILGVIPLVF 285 (567)
Q Consensus 212 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~ 285 (567)
.+++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+ +||+.|.+.+++.++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999888888888999986 6899999999999889888888776654 3999888776554433
Q ss_pred HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHH
Q psy3209 286 FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSF 365 (567)
Q Consensus 286 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (567)
. ..++|+.++. +. . ++...+...++.+++|..+...+ ..
T Consensus 168 ~--~~~~~~~~~~----~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~ 206 (355)
T TIGR00896 168 L--LAWIPQVRRR----VA--------------A----------------NQTTTRLTPVRIWRSPLAWQVTV-----FF 206 (355)
T ss_pred H--HHHhhhhccc----cC--------------C----------------CCCCCCCCCchhhcCHhHHHHHH-----HH
Confidence 2 2234443210 00 0 00001123345566554432211 11
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 366 LQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACFYW 443 (567)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (567)
+.....++....|.|.++++.+.+ ...+.......++.++++++.|++.||+ +||+.+..+..+..++.+.+.+..
T Consensus 207 ~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-- 284 (355)
T TIGR00896 207 GLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--
Confidence 222223456677889988876544 4455677778889999999999999999 556666666666666655444321
Q ss_pred hhhhHHHHHHHHHHHHHhhccccchhhhhcc-cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 444 NFDYWVSYLFTSLFGITYSLGIGIIPTTLLS-ELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
. .. .. ....+++++.+..+ +...+... +..+++.++...++.+.+++++.+++|.+.|.+.|..|.+
T Consensus 285 ~-~~-~~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 285 M-HG-LW-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred h-hH-HH-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 11 11 13445555554433 33334444 4445677899999999999999999999999999988743
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=233.62 Aligned_cols=370 Identities=11% Similarity=0.075 Sum_probs=244.9
Q ss_pred hhHHHhhhhccch-hhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccch-hHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWP-SVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGR-KNTLLLTSLVFLTSS 201 (567)
Q Consensus 124 ~~~~~~~~~~~~~-~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~ 201 (567)
+..+.+....+.. .+..+.+.++ +|++..++|++.+++.++..++++++|.++||+|| |+++.++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~-----~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKT-----LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3344444445554 4445555566 89999999999999999999999999999999965 888899999998999
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccccccchhhhhh--------cccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q psy3209 202 LLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIA--------EITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---- 269 (567)
Q Consensus 202 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---- 269 (567)
.+..+.++++.+++.|++.|++.+...+...++.. |......|.+..| .+|.++++.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~ 157 (418)
T TIGR00889 84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL 157 (418)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc
Confidence 99999999999999999999987766665554432 2222233445444 24555556555554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhc
Q psy3209 270 QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVS 349 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (567)
.|+ .|++.++..++.++..+++||+|+- +++++. + .++..+.+.+++++
T Consensus 158 ~~~-~f~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~------------~--------------~~~~~~~~~~~~~k 206 (418)
T TIGR00889 158 SNI-QLYITAGSSALLGVFALTLPDIPVA----KSTAKM------------S--------------IKVMLGLDAFILFK 206 (418)
T ss_pred hhH-HHHHHHHHHHHHHHHHhcCCCCCCC----cccccc------------C--------------HHHHhhhhHHHHhc
Confidence 244 3555566555544555678887521 000000 0 00001112345667
Q ss_pred chhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC---------chhHHHHHHHHHHHHHHHhhHHHHHhhhcch
Q psy3209 350 NYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL---------IGRTECLIIFSVLLVVTNFACSPLVDIAGRK 420 (567)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 420 (567)
+|.++...+..++... .......+.+.++++.+.. ...+.......+..+++.++.+++.||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r 281 (418)
T TIGR00889 207 NKRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK 281 (418)
T ss_pred CCCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 6655433333222222 1223345556666654422 2235566667778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHH-HHHHHHHHH
Q psy3209 421 TLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIAS-IAFALASFL 499 (567)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i 499 (567)
+++..+.++..++..++..........+..++..++.+.+.+.. .+....++.|.+|++.|+++.|+.+ ....+|.++
T Consensus 282 ~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 282 KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999888877766555441100001233344455566555543 3343478899999999999999997 567899999
Q ss_pred HHHHHHHHHHhh------ccchhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy3209 500 INKFYKIVQINF------GLYYMFAFYAICSGINVLFTFFFIFETKGK 541 (567)
Q Consensus 500 ~~~i~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (567)
+|.+.|.+.++. ||+.+|.+.+++.+++.++.+++.+++.+.
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999985 467788888888888888877787766443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=235.60 Aligned_cols=340 Identities=16% Similarity=0.117 Sum_probs=228.0
Q ss_pred hhhhHHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS 200 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 200 (567)
.+++.+..........+.+|. +.++ +|+++.+.+++.+++.+++++++++.|+++||+|||++++++.++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP 80 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHH-----hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344455555566667888895 8888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh-----------
Q psy3209 201 SLLTIFAQ-SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY----------- 268 (567)
Q Consensus 201 ~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----------- 268 (567)
.+++++++ +++.+++.|+++|++.+. ++....++.|++|+++|++++++......+|..+++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 81 CLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999 999999999999999654 56678899999999999999999886666665555444432
Q ss_pred ---hhhHHHH-HHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccccc
Q psy3209 269 ---IQYQTLN-IILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSG 343 (567)
Q Consensus 269 ---l~wr~~f-~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (567)
.+||+.| +..+++.++ .++.+.+.+|+|+. +.++++.. . ..... . .+++....
T Consensus 160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~---~~~~~--~-----------~~~~~~~~ 217 (366)
T TIGR00886 160 PAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATGKLS--F---KGARW--S-----------VGTGALGD 217 (366)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccchhcc--c---ccccc--c-----------ccchhHHH
Confidence 2699999 444555444 34445556776531 11000000 0 00000 0 00000113
Q ss_pred HHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchH
Q psy3209 344 YRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKT 421 (567)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 421 (567)
.++.++++..+... +..+........+..+.|.++++..+. .+.+.......+..+++.+++|++.||+++|+
T Consensus 218 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 292 (366)
T TIGR00886 218 QLKVFRDRHTWILA-----LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR 292 (366)
T ss_pred HHHHHhccchhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence 34555555433222 122222223456677888888765443 34455666777888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHH
Q psy3209 422 LNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA 496 (567)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 496 (567)
.+..+......+..++........+.+.......+...+.+.+.... +....+.+| +++|+++|+.+..+++|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 293 KLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGST-FALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchh-hhcchhhch-hhcccHHHHHHHhccCC
Confidence 77776665555554444321100023333333444444555444443 578888887 68999999999888765
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=226.17 Aligned_cols=375 Identities=14% Similarity=0.096 Sum_probs=268.1
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccC----------------------------------------------
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYV---------------------------------------------- 149 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~---------------------------------------------- 149 (567)
.+++..++.+.+.+++..+.+.|.+|....| ++
T Consensus 20 ~lilviv~ialllDnmL~~vivPiiP~~L~d-~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 98 (464)
T KOG3764|consen 20 PLILVIVSIALLLDNMLYTVIVPIIPGYLYD-IQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEA 98 (464)
T ss_pred ceEEEEEehhhhccCccceeeeccCccHHHH-hccCCccCccccccccCCCCCccccceecccCCccccccccccCchhc
Confidence 3445666677777777778888887776655 22
Q ss_pred CCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccccc
Q psy3209 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 150 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 229 (567)
.+.+-+++++|++.+.+.+.+.+..++.|.+.||+|+|..+++|++++...+++.++.++++.++++|.+||+|.++..+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 23455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCC-cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH-hhcccCCchhHHhhc
Q psy3209 230 VVPMYIAEITDKE-IRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFIT-FMFIPETPYFHIIKD 303 (567)
Q Consensus 230 ~~~~~i~e~~~~~-~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~-~~~lpesp~~~~~~~ 303 (567)
++.++++|.+|++ +|++++|+.-.+.++|.++||.+|+.+ |.+..|++.+++.++-..+ ++.++.+..
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------ 252 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------ 252 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------
Confidence 9999999999875 579999999999999999999999987 9999999999999885444 444443310
Q ss_pred CcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhh
Q psy3209 304 NNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTL 383 (567)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (567)
.+.+..+..++++++++|..+........... .....--.++.++
T Consensus 253 ------------------------------~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~-----~lafLePtlslwm 297 (464)
T KOG3764|consen 253 ------------------------------DPDSTEQGTPMWSLLMDPYILLIAGAITFSNS-----SLAFLEPTLSLWM 297 (464)
T ss_pred ------------------------------CccccccCccHHHHHhCchHhhhhcchhhccc-----hHHHhCcccHHHH
Confidence 00122335578888888744322211111111 1122222333434
Q ss_pred hhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy3209 384 PEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLN--MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGI 459 (567)
Q Consensus 384 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (567)
.+.... ...+..++...+...++..+.|.+.||++..+.+ ..+.+..+++.....+... ....+......++.+.
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~-~~~L~vp~~~l~~~i~ 376 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS-IAQLWVPNFGLGFGIG 376 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh-HHHHhhhhHHHHHHHH
Confidence 443332 3566778888899999999999999999943333 3333333333333333111 1122222223333333
Q ss_pred HhhccccchhhhhcccCCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 460 TYSLGIGIIPTTLLSELFPTN---VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
.....+.|.. .+..+.-..+ ..|.++++......+|.++||.++|.+.+..|+.|...+.++..++..-++.++
T Consensus 377 ~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 377 LADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344554 4555544334 678999999999999999999999999999999999888888888776655443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=228.79 Aligned_cols=360 Identities=12% Similarity=0.033 Sum_probs=223.6
Q ss_pred cchhhhhhhh-hhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---HHh-
Q psy3209 134 TWPSVALYKW-QTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI---FAQ- 208 (567)
Q Consensus 134 ~~~~~~l~~i-~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~- 208 (567)
+...+.+|.. .++ +|+++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++
T Consensus 27 ~~~~~~~~~~l~~~-----~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (420)
T PRK09528 27 SSWFSFFPIWLHDI-----NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL 101 (420)
T ss_pred HHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555443 445 899999999999999999999999999999999999999887766655543221 111
Q ss_pred ----hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHH
Q psy3209 209 ----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGVI 281 (567)
Q Consensus 209 ----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~ 281 (567)
.+...++++++.|.+.....+....+..+ . .+++++.++.......+|..+++.+++.+ +|++.|++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~ 179 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHH
Confidence 11112233444444333333333333222 2 34567778888888888888888888776 899999998888
Q ss_pred HHHHHHHhhcc-cCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHH
Q psy3209 282 PLVFFITFMFI-PETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIV 360 (567)
Q Consensus 282 ~~~~~~~~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (567)
+++.++..+++ ||.++.. +.++++ . .+++.......++.+++|.++...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~-----------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~ 232 (420)
T PRK09528 180 ALILLVLLFFAKPDAPSTA---KVANAL-G-----------------------ANASAVSLKDALALLKLPKFWFLVLYV 232 (420)
T ss_pred HHHHHHHHhcccccccchh---hhccch-h-----------------------cccccccHHHHHHHccCCCeEeehHHH
Confidence 77655555444 3432100 000000 0 000001112334566666554322222
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhc----cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEH----HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 435 (567)
+.... .+.....+.|.++.+. +.. ...+.......+..+++.++.|++.||+++|+.+..+.++..+..+
T Consensus 233 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~ 307 (420)
T PRK09528 233 IGVAC-----FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRII 307 (420)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 11111 1122223344444332 211 2234555666777889999999999999999998888777777666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 436 VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI-ASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
++.+ ..+.+..+....+.+.+.+...... ..+..+.+|++.+++..+. .++...+|.+++|.+.|.+.|..|+.
T Consensus 308 l~~~----~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~ 382 (420)
T PRK09528 308 GSGF----ATGPLEVSILKLLHAFEVPFLLVGV-FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQ 382 (420)
T ss_pred HHHh----cccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 5544 1234444444444444444322233 4678888899998888766 67778999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhccC
Q psy3209 515 YMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
.+|.+.+++.++..++.+...++
T Consensus 383 ~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 383 GTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99998888877776666555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=222.57 Aligned_cols=350 Identities=10% Similarity=-0.016 Sum_probs=240.0
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchh----HHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRK----NTLLLTSLVFLTSS 201 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~ 201 (567)
.+...+..+...|.+|.+.++ +|.+..++|++.+++.++..++++++|+++||+||| +.+.++..+. ..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~-----~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~ 85 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG-----QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AV 85 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh-----cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HH
Confidence 444455667888999999999 999999999999999999999999999999999984 3333222222 22
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy3209 202 LLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNII 277 (567)
Q Consensus 202 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~ 277 (567)
.....+++++.+++.|++.|++.+...+...+++.++ +++|+++.+.......+|..+||++++.+ |||..|++
T Consensus 86 ~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 86 AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3344468899999999999999888888888887776 35577878888877788888888888765 89999988
Q ss_pred HHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHH
Q psy3209 278 LGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKAL 357 (567)
Q Consensus 278 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (567)
.++..++.++..++.||.++ +++++ +..++...++++++++|.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------------------~~~~~~~~~~~~i~~~~~~~~~~ 211 (382)
T PRK11128 164 LTAGVASMLLGQLLRPTIMP-----QGESR---------------------------QQESAGWPAWKALLKEPTVWRFL 211 (382)
T ss_pred HHHHHHHHHHHHHccCCCCC-----ccccc---------------------------cccccccchHHHHHcChhHHHHH
Confidence 77655544444444555321 00000 00001123567788877555433
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 358 IIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
+..++... .......+.|.++.+.+.. ...+.......+..++..++.+++.||+++|+.+..+.++.+++.++
T Consensus 212 ~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~ 286 (382)
T PRK11128 212 LCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL 286 (382)
T ss_pred HHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 32222222 2234455667777665544 33455555666778888899999999999999988888777776555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccch
Q psy3209 437 LAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIAS-IAFALASFLINKFYKIVQINFGLYY 515 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~~~~g~~~ 515 (567)
+.. ..+.+..++..++.+++++...... ..+..+. +++++++..++.+ ....+|..++|.+.|.+.|..|. .
T Consensus 287 ~~~----~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~ 359 (382)
T PRK11128 287 MGS----TTALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-G 359 (382)
T ss_pred HHh----hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-H
Confidence 443 2245555556666677666543333 3666676 5566788888886 44567778999999999999887 4
Q ss_pred hhhHHHHHHHHHH
Q psy3209 516 MFAFYAICSGINV 528 (567)
Q Consensus 516 ~~~~~~~~~~~~~ 528 (567)
.++..+++.+++.
T Consensus 360 ~~~~~~~~~~~~~ 372 (382)
T PRK11128 360 VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 5665555555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=225.15 Aligned_cols=360 Identities=15% Similarity=0.088 Sum_probs=241.8
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-----chhH-HHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-----GRKN-TLLLTSLVF 197 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~ 197 (567)
...+..++..+.....+|...++ .|++.+++|++..+... .+..+++|+++||+ |||+ +++++.++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-----~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-----EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 34667788888899999999999 89999999999777765 69999999999999 8875 788888899
Q ss_pred HHHHHHHHHH---hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----
Q psy3209 198 LTSSLLTIFA---QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----- 269 (567)
Q Consensus 198 ~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----- 269 (567)
+++..+.++. .+++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..+
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 8888888887 35777888888889888888899999999999999999999999999999999888766553
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhc
Q psy3209 270 QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVS 349 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (567)
|||..|++.+++.++..+..+++||+++.. ++.++. . ++...+++++++
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~----~~~~~~--------------~-------------~~~~~~~~~l~~ 207 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPA----RPPRSL--------------G-------------EAVVGPLRDFFS 207 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc----cccchh--------------H-------------HHHHHHHHHHHh
Confidence 899999998888776555556677764211 000000 0 001124566777
Q ss_pred chhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhh-ccCC-chhHHHHHHHH-HHHHHHHhhHHHHHhhhcchHHHHHH
Q psy3209 350 NYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE-HHGL-IGRTECLIIFS-VLLVVTNFACSPLVDIAGRKTLNMLS 426 (567)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~ 426 (567)
+|.++...+..++...... ....+.+.++.+ .+.. ...+......+ ++.+++.++++++.||+++|+.+..+
T Consensus 208 ~~~~~~~l~~~~l~~~~~~-----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~ 282 (402)
T PRK11902 208 RRGAWALLLLIVLYKLGDA-----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLF 282 (402)
T ss_pred CcCHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7655543332222222111 111222333333 3322 22333333333 45788999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy3209 427 AFLSSGVMIVLAACFYWNFDYWVSYLFTSL----FGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINK 502 (567)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 502 (567)
..+..+..+.+........+.+...+...+ .+.+.+. .......++.+.+|.+. .++.+....++..+++.
T Consensus 283 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 357 (402)
T PRK11902 283 GVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAA-FVALLMALCNRSFSATQ----YALLSALASVGRVYVGP 357 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHH
Confidence 666555443332211111223333333222 2222222 23333467777777554 44555556777776777
Q ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHH
Q psy3209 503 FYKIVQINFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 503 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+.|.+.|..|+...|.+.+++++++.++.
T Consensus 358 ~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 358 TSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 89999999999988888887777765554
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=234.97 Aligned_cols=402 Identities=14% Similarity=0.165 Sum_probs=284.2
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
..+-|.+++..++......-.....+...+.++++ |+.+..+++|+.++....+.+..++.+.+.||||.|.+.+
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~-----f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i 115 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDY-----FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI 115 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHH-----hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence 34556666666555544333333344678888888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-
Q psy3209 192 LTSLVFLTSSLLTIFAQSSYWLFTS-RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI- 269 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~~~~l~~~-R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 269 (567)
+|.++.++|.++.+|++++|.+++. -++.|+|.|..+.....++..+| +++|+.+.|+...+.++|.++-|.+...+
T Consensus 116 ~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 116 AGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 9999999999999999999998876 79999999999999999999888 57899999999999999998888877776
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhhc-ccCCchhHHhhcCcHHHHHHHHHH------------hcCCCcchH----HHHHH
Q psy3209 270 ---QYQTLNIILGVIPLVFFITFMF-IPETPYFHIIKDNNQVAAKKSLEW------------FKGKSQNIT----EELDE 329 (567)
Q Consensus 270 ---~wr~~f~~~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~~~ 329 (567)
|||+.+++.+.+.+-.++.-.. -|.++.. ++. ..+..+.... ....+.... .+...
T Consensus 195 ~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (509)
T KOG2504|consen 195 SKYGWRGALLIFGGISLNVLVAGALLRPLSPPK---KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLAT 270 (509)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cch-hhhhhccccccccccccccccccccCCCCCCcccccchhh
Confidence 9999999988888664444433 3433321 111 0000000000 000000000 00000
Q ss_pred HHHHhhhhh--cccccH----HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHH
Q psy3209 330 IVLTTNENM--KNKSGY----RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVL 402 (567)
Q Consensus 330 ~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 402 (567)
.....++.. ..+... .++++++ .++.+.+.......+++....++|.+..+.+.. .+......+.++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~ 345 (509)
T KOG2504|consen 271 LKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVS 345 (509)
T ss_pred hhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHh
Confidence 000000000 111111 3556654 445555555555667788888999999877766 5667888889999
Q ss_pred HHHHHhhHHHHHhhhcchHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChh
Q psy3209 403 LVVTNFACSPLVDIAGRKTL--NMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN 480 (567)
Q Consensus 403 ~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 480 (567)
.++++++.|++.|+...++. ..++.++.+++.+.+.. ..+.+..+....+++++.+. +.......+.|+++.+
T Consensus 346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~----~~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF----ATTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLE 420 (509)
T ss_pred hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChh
Confidence 99999999999999885443 34444444444433322 23455666666777776664 4445446889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHH
Q psy3209 481 VKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 481 ~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 533 (567)
+-..+.|+...+..++..+||.+.|.+.|..| |...|.+.++..+++..+.++
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999988 667777777777776655433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=221.01 Aligned_cols=365 Identities=14% Similarity=0.069 Sum_probs=237.1
Q ss_pred hHHHhhhhccchhhhhhhhh-hcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYKWQ-TKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~i~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 203 (567)
..++.....+...+.+|... ++ +|.++.+.+++.+++.++..+++++.|+++||+|||+.++.++....++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 84 (396)
T TIGR00882 10 FFFLYFFIMSAYFPFFPIWLHDV-----NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP 84 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444455555666666554 45 8999999999999999999999999999999999999999887776655433
Q ss_pred HH---HH-----hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhH
Q psy3209 204 TI---FA-----QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQ 272 (567)
Q Consensus 204 ~~---~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr 272 (567)
.. +. +.+..+++.|++.|++.+...+....+..+..+ +++...+.......+|.++++.+++.+ +||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~ 162 (396)
T TIGR00882 85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQ 162 (396)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCch
Confidence 21 11 223445677899999888888888777777543 334556666666677777777777765 899
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcch
Q psy3209 273 TLNIILGVIPLVFFITFMF-IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNY 351 (567)
Q Consensus 273 ~~f~~~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (567)
+.|++.++++++..+..++ .||+|+.. ++ ++. .+ .++++.+..+.++++++|
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-------~~---------------~~~~~~~~~~~~~~l~~~ 215 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLMFAKPKAPSSA----TV-ANA-------LG---------------ANASAFSLKLALELFRQR 215 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhh----hh-hcc-------cc---------------cccCCCCHHHHHHHHcCC
Confidence 9999988888775444443 45543110 00 000 00 000111123456777776
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhcc----CC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHH
Q psy3209 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH----GL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLS 426 (567)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 426 (567)
.++...+..+... ..+.....+.+.++.+.. .. ...+.......+...++.+..+++.||+++|+.+.++
T Consensus 216 ~~~~~~l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~ 290 (396)
T TIGR00882 216 KFWMFVLYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIA 290 (396)
T ss_pred cHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 5543322221111 112223334455544432 11 2234455566677888889999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy3209 427 AFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI-ASIAFALASFLINKFYK 505 (567)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g 505 (567)
..+.++...++.. ..+.+..++..++.+.+...... ....+..+..|++.++++.+. .+....+|+++++.+.|
T Consensus 291 ~~l~~l~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 291 GTIMSVRIIGSSF----ATTALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 7777765554333 22344444444455544433222 223566777788888887766 57889999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHH
Q psy3209 506 IVQINFGLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 506 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
.+.+..|+..+|.+.+++.++..+...+
T Consensus 366 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 366 NMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887777665533
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=254.70 Aligned_cols=343 Identities=15% Similarity=0.092 Sum_probs=234.3
Q ss_pred ccCC-hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccc
Q psy3209 152 FELD-AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL---TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVG 227 (567)
Q Consensus 152 ~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 227 (567)
.+.+ ....++..+++.+.++++++++|+++||+|||+++.. ..++.++..+.+...++++.++++|+++|++.+..
T Consensus 46 ~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 46 LGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALF 125 (1140)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 4443 3457888999999999999999999999999997633 33333333344444589999999999999999999
Q ss_pred ccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhc
Q psy3209 228 FTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKD 303 (567)
Q Consensus 228 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~ 303 (567)
.|+..+++.+++++++|++++++.+++..+|.++||++++++ +|++.|+..++..++.+++.+++|+++.- .+
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 202 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA---AP 202 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC---CC
Confidence 999999999999999999999999999999999999999987 89999955555555556666667765420 00
Q ss_pred CcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhh
Q psy3209 304 NNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTL 383 (567)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (567)
+...+ . ... ......++.+.+++.++...+..++.. .....+..+.|.|+
T Consensus 203 ~~~~~------------~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~ 252 (1140)
T PRK06814 203 DLKID------------R---NII----------RSTITLLKYAKADKRIWLAILGISWFW-----LVGAVVLSQLPLLA 252 (1140)
T ss_pred CCeec------------c---chH----------HHHHHHHHHHhcCchHHHHHHHHHHHH-----HHHHHHHHHhHHHH
Confidence 00000 0 000 000123555666654443322222222 22345667888888
Q ss_pred hhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH----------------HHhhh
Q psy3209 384 PEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC----------------FYWNF 445 (567)
Q Consensus 384 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 445 (567)
.+..+. ...+......+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+. .....
T Consensus 253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 776433 445677778889999999999999988777665555555544444333321 00012
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHH
Q psy3209 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN-FGLYYMFAFYAICS 524 (567)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~ 524 (567)
+.+..++..++++++.++...+. .+++.+.+|++.+|+++|+.+++..++..+++.+.+.+.+. .++...+++.+++.
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALAN 411 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555666666666544454 58999999999999999999999999999999999988753 34444444444433
Q ss_pred HHHH
Q psy3209 525 GINV 528 (567)
Q Consensus 525 ~~~~ 528 (567)
++..
T Consensus 412 ~~~~ 415 (1140)
T PRK06814 412 LIVA 415 (1140)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=251.38 Aligned_cols=341 Identities=15% Similarity=0.074 Sum_probs=231.3
Q ss_pred ccCC--hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhccccc
Q psy3209 152 FELD--AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI---FAQSSYWLFTSRLLSGIGKGV 226 (567)
Q Consensus 152 ~~~s--~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~R~l~G~~~g~ 226 (567)
++.+ ....+++.+++.+++.++++++|+++||+|||++++++.++..++.+++. ++++++.++++|+++|++.+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 119 (1146)
T PRK08633 40 YDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAI 119 (1146)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 4444 44579999999999999999999999999999999999877666655443 457899999999999999999
Q ss_pred cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-h------------hHHHHHHHHHHHH-HHHHHhhcc
Q psy3209 227 GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-Q------------YQTLNIILGVIPL-VFFITFMFI 292 (567)
Q Consensus 227 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-~------------wr~~f~~~~~~~~-~~~~~~~~l 292 (567)
..++..+++.|++|+++|++++++.+.+..+|.++|+++++++ . |++.+.+.++... +.++..+++
T Consensus 120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1146)
T PRK08633 120 YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL 199 (1146)
T ss_pred hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988776 2 2333333333322 334445567
Q ss_pred cCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhH
Q psy3209 293 PETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGV 372 (567)
Q Consensus 293 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (567)
||+|... ..+.+.++ .. ........++.+++++.++...+...+.. ...
T Consensus 200 ~~~~~~~-~~~~~~~~----------~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~ 248 (1146)
T PRK08633 200 PKVPAAA-PEVFDKKK----------YL---------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFW-----FIS 248 (1146)
T ss_pred cCCCCCC-cccccccc----------cc---------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----HHH
Confidence 8876422 00000000 00 00001123455566554433222222111 123
Q ss_pred HHHHHhhhhhhhhccCC--c-hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 373 STILSYASTTLPEHHGL--I-GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
.....++|.++.+..+. . ..+......+++.+++.++.+++.||+++++.+.++.++.+++.+++.+. .+.+.
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 324 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA----PSLAS 324 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh----hhHHH
Confidence 44556677777665433 3 45667777788889999999999999999888877777666665555442 24444
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhhhHHHHHHHHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG--LYYMFAFYAICSGIN 527 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~ 527 (567)
.++..++++++.++...+. .+++.+..|++.||+++|+.+++.++|.++++.+.+.+.. .+ +...+++.+.+.++.
T Consensus 325 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 325 VLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 5555666666666544444 4888999999999999999999999999888877665543 33 223444444444433
Q ss_pred HH
Q psy3209 528 VL 529 (567)
Q Consensus 528 ~~ 529 (567)
.+
T Consensus 403 ~~ 404 (1146)
T PRK08633 403 TL 404 (1146)
T ss_pred HH
Confidence 33
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=199.77 Aligned_cols=358 Identities=16% Similarity=0.174 Sum_probs=268.9
Q ss_pred HHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHH
Q psy3209 119 AFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFL 198 (567)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 198 (567)
.+.+....++.++......+.+|.+++. |+++..+.+++..+++.|+.+.+++.|++.+|+|+|+-+++|+.+++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~-----f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEV-----FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHH-----hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455566778899999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------
Q psy3209 199 TSSLLTI---FAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI------ 269 (567)
Q Consensus 199 i~~~~~~---~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------ 269 (567)
+++++.. -..++..++++-|+.|.|.+...+.+..+++...++++..+.+.+.+..+++|.+++|+++..+
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999884 5668999999999999999999999999999999999889999999999999999999998765
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHhhc--ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHH
Q psy3209 270 -----------------QYQTLNIILGVIPLVFFITFMF--IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEI 330 (567)
Q Consensus 270 -----------------~wr~~f~~~~~~~~~~~~~~~~--lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (567)
.|+++|...+...+++.+.... .|+.+.-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~------------------------------- 218 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA------------------------------- 218 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc-------------------------------
Confidence 2667777766665554444333 34432100
Q ss_pred HHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHh
Q psy3209 331 VLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNF 408 (567)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 408 (567)
.+..+.......+++++|.++... +..++..........|++.++.+..+. .++......+..+.++|++
T Consensus 219 ---~~~~~~~~~~~~~l~~~~~~~~gv-----l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRF 290 (422)
T COG0738 219 ---PSLGASGSAGLSSLFQNKHLRLGV-----LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRF 290 (422)
T ss_pred ---ccccccccchHHHHHhChHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 000011111467778876544322 222333334566778888898885443 4556777788899999999
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHH
Q psy3209 409 ACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI 488 (567)
Q Consensus 409 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 488 (567)
++.++..|+...+.+.+...+..+.++...+. +....+....+.+.+.+. +.|..++...+..| ++. ...|.
T Consensus 291 ig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----~g~v~~~~l~~ig~F~si-mfPTIfslal~~l~-~~t-s~~s~ 362 (422)
T COG0738 291 IGSALMSRIKPEKYLAFYALIAILLLLAVALI-----GGVVALYALFLIGLFNSI-MFPTIFSLALKNLG-EHT-SVGSG 362 (422)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----cChHHHHHHHHHHHHhHH-HHHHHHHHHHhccC-ccc-cccce
Confidence 99999999999988877766555554444441 224455556666666665 45555688889988 443 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH
Q psy3209 489 ASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINV 528 (567)
Q Consensus 489 ~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 528 (567)
...+..+|+++.|++.|++.|..|....+......|.+..
T Consensus 363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5556789999999999999999998766664555554444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=220.50 Aligned_cols=409 Identities=11% Similarity=0.069 Sum_probs=266.2
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
..++|..++...+...+.+... ..+...|.++++ +|++..+.+++.++. ...++++++.|+++||+|||++++
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~~-----lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vll 95 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMY-AFNLISGAMQAR-----YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFV 95 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4455655555555555444433 233556778888 999999999998874 455678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHH-HHH
Q psy3209 192 LTSLVFLTSSLLTIFA------QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILF-SLC 264 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i-~~~ 264 (567)
++.+++++++++++++ ++++.++++|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++
T Consensus 96 ig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 96 LSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred HHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 689999999999999999888888999999996 78999999999999999975 555
Q ss_pred hhhhh--hhHHHHHHHHHHHHHH-HHHhhcc--cCCchhHHhhcCcHHHHHHHHHHhcCCC------c------------
Q psy3209 265 VGPYI--QYQTLNIILGVIPLVF-FITFMFI--PETPYFHIIKDNNQVAAKKSLEWFKGKS------Q------------ 321 (567)
Q Consensus 265 l~~~l--~wr~~f~~~~~~~~~~-~~~~~~l--pesp~~~~~~~~~~~~~~~~~~~~~~~~------~------------ 321 (567)
...++ +|++.|++.++++++. ++.+.++ |+.|++. .++++.++.++..++..+.. +
T Consensus 175 ~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~ 253 (591)
T PTZ00207 175 QLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTG-YQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILI 253 (591)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhc-ccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHH
Confidence 55555 8999999988888764 3344444 5444443 23322222222211111100 0
Q ss_pred --------------------chHHHHHH--H---------------------------------------HHHhh----h
Q psy3209 322 --------------------NITEELDE--I---------------------------------------VLTTN----E 336 (567)
Q Consensus 322 --------------------~~~~~~~~--~---------------------------------------~~~~~----~ 336 (567)
.......- . ..... .
T Consensus 254 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (591)
T PTZ00207 254 ILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVET 333 (591)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccc
Confidence 00000000 0 00000 0
Q ss_pred --h---hcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCCchh--H-HHHHHHHHHHHHHH
Q psy3209 337 --N---MKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGLIGR--T-ECLIIFSVLLVVTN 407 (567)
Q Consensus 337 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~ 407 (567)
+ .+...++++.+++.. +++++..+++..+.-..+...+..+.+.. +...+. . ....+.++++.+|+
T Consensus 334 ~~~~~~P~~~~t~~q~l~~~d-----~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR 408 (591)
T PTZ00207 334 DVDYIAPQFQETFIEGLKTAR-----LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR 408 (591)
T ss_pred cccCCCCCCcchHHHHHhchh-----HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH
Confidence 0 000114444444433 33444444444444455566667776666 432222 2 25678889999999
Q ss_pred hhHHHHHhhhcch--------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCCh
Q psy3209 408 FACSPLVDIAGRK--------TLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPT 479 (567)
Q Consensus 408 ~~~g~l~dr~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 479 (567)
+..|.+.....+| .+.+....++.++.+++... ......++..++.+++++..+.... ..++|+|.
T Consensus 409 l~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~----~p~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg- 482 (591)
T PTZ00207 409 LCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT----LPKAALPLPYFIAAFANGFMAATIA-LVTRTIFA- 482 (591)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH----CCccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-
Confidence 9999887332222 22222222244444444331 1224566777788888887666554 89999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc-------------cchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 480 NVKSSAASIASIAFALASFLI-NKFYKIVQINFG-------------LYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 480 ~~~~~~~g~~~~~~~~g~~i~-~~i~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
++-|+-+-+.....-+|..+. -.++|.++|... +..+|++++++++++.++...+..++|+
T Consensus 483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 888888888888888888776 567888887542 4578999999999998887666555543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-24 Score=214.84 Aligned_cols=379 Identities=13% Similarity=0.091 Sum_probs=238.9
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
+..+...++......+.....+.+++.+..| +|- .....|+.+...++.+++.++.|.|+|.||||.+++.+.+
T Consensus 43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-----iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~ 116 (599)
T PF06609_consen 43 IASFAAFSLAVIAAYFVLVLPASILPYINAD-----IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL 116 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-----cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 3333344454555556666677888989888 884 4678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q psy3209 196 VFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QY 271 (567)
Q Consensus 196 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 271 (567)
+..+|+++++.++|...++++-.+.|+|.|... .....++|..|.|.|+...++..........+++.++..+ +|
T Consensus 117 l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 117 LGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred HHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 999999999999999999999999999987765 4455689999999998887777766555555666666554 79
Q ss_pred HHHHHHHHHHHHHH-HHHhhc-ccCCchhHHhhcCcHHHHHHHHHHhc------------------CCC--c-chHHHHH
Q psy3209 272 QTLNIILGVIPLVF-FITFMF-IPETPYFHIIKDNNQVAAKKSLEWFK------------------GKS--Q-NITEELD 328 (567)
Q Consensus 272 r~~f~~~~~~~~~~-~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~------------------~~~--~-~~~~~~~ 328 (567)
||.|++.+++..+. ++.++| .|.+.+....++..+.+..+.++.+. +.. + +...-..
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa 275 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA 275 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Confidence 99999998886663 333333 33321111011112222223333221 110 0 0000000
Q ss_pred H-------H-H-HHhhhh--hcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCCc-----hh
Q psy3209 329 E-------I-V-LTTNEN--MKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLI-----GR 392 (567)
Q Consensus 329 ~-------~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 392 (567)
. + . .--+.. .+++.-..+++++++. +...++..+.....++....+.|......+... ..
T Consensus 276 ~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~----~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~ 351 (599)
T PF06609_consen 276 PLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRG----FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEI 351 (599)
T ss_pred hHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccee
Confidence 0 0 0 000111 1122223456665322 222212221222224555556666555443321 34
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcchHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhh
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIAGRKTLN-MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTT 471 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (567)
+....+.+++..++.++.+.+..++++-|.. +++.+++.+++.++.... .+ +....+...++.+++.+....+.. .
T Consensus 352 ~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-~~-n~~~~i~~~~l~g~giG~~~~~~~-~ 428 (599)
T PF06609_consen 352 GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-PD-NKNAAIAFLVLAGFGIGGILVPAI-V 428 (599)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-CC-CcchHHHHHHHHHHhHHHHHHHHH-H
Confidence 4666777888888889999999888875544 566555555444444422 22 222233445555555554444443 6
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 472 LLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 472 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
.+.-..|++.-|++.|+..+++.+|+.++..++..+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677789999999999999999999999998876554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=219.36 Aligned_cols=331 Identities=15% Similarity=0.083 Sum_probs=225.0
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc----cch-hHHHHHHHHHHHHHHHHHHHHhh----
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK----FGR-KNTLLLTSLVFLTSSLLTIFAQS---- 209 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~~~~---- 209 (567)
..+.+.++ +|+++.++|++.++..+..++..++.|+++|| +|| |+.++++...++++.+++.+.++
T Consensus 22 l~~~~~~~-----~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 22 LLFFYTDV-----LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHc-----cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 34444555 89999999999999999999999999999997 687 45677888888888888877654
Q ss_pred --HHHHHHHHHHHhccccccccchhhhhhccc-CCCcchhHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHH
Q psy3209 210 --SYWLFTSRLLSGIGKGVGFTVVPMYIAEIT-DKEIRGTLSTMFTGHLYGGILFSLCVGP-----------YIQYQTLN 275 (567)
Q Consensus 210 --~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~-----------~l~wr~~f 275 (567)
+..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.. ..+||+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~ 176 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA 176 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH
Confidence 456777889999998887777788888887 4688999999988777777655443321 22799999
Q ss_pred HHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
++.++++++. ++.++++||+++.. ..+ .+++.+....++.++++|.++
T Consensus 177 ~i~~~l~~~~~~~~~~~~~e~~~~~----~~~---------------------------~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 177 LVLALIGVVSLIICFFGTKERYSEI----PKN---------------------------IEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHHHHHHHHHHHHHcCCEecCCCC----Ccc---------------------------cccCCCHHHHHHHHhCCHHHH
Confidence 9988888774 44455677764110 000 000001122345666666554
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
...+..++.. ...+....+.+.+.+...+. ...+.......++.+++.++.++++||+|+|+.+..+..+..++
T Consensus 226 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 226 ILCLAYLFYN-----LAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHH-----HHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3222222211 12233333344444433322 23344555567888899999999999999999998888777766
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFP-------TNVKSSAASIASIAFALASFLINKFYKI 506 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 506 (567)
.+.+.+. ..+.+..++..++.+++.+.. .+..+++.+|..+ ++.+|.+.|+.+++..+|..+++.+.|.
T Consensus 301 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 301 YLIFFFA---GSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHc---chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554431 123334444445555555543 3444577777754 4568999999999999999999999999
Q ss_pred HHHhhccc
Q psy3209 507 VQINFGLY 514 (567)
Q Consensus 507 l~~~~g~~ 514 (567)
+.+..|+.
T Consensus 377 ll~~~G~~ 384 (437)
T TIGR00792 377 ILGIIGYV 384 (437)
T ss_pred HHHHcCCC
Confidence 99887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=231.13 Aligned_cols=370 Identities=13% Similarity=0.125 Sum_probs=251.3
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLT 199 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 199 (567)
+..++..+...+..++.+.+++.+.++ |+++..+.|++.+.+.++++++.++.+++.||+|||+++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~-----F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERR-----FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh-----hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 334456677777889999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---------------------------------------------------hHHHHHHHHHHHhccccccc
Q psy3209 200 SSLLTIFAQ---------------------------------------------------SSYWLFTSRLLSGIGKGVGF 228 (567)
Q Consensus 200 ~~~~~~~~~---------------------------------------------------~~~~l~~~R~l~G~~~g~~~ 228 (567)
+++++++.+ .+..++++|+++|+|.+..+
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999998763 24567889999999999999
Q ss_pred cchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHHHHHH
Q psy3209 229 TVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--------------------------QYQTLNIILGVIP 282 (567)
Q Consensus 229 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------------------~wr~~f~~~~~~~ 282 (567)
+.+.+++.|++|+++|+++++++..+..+|+.+|+++++.+ +|+..|++.+++.
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887654 1677788888887
Q ss_pred HHHHHHhhcccCC-chhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHH
Q psy3209 283 LVFFITFMFIPET-PYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVL 361 (567)
Q Consensus 283 ~~~~~~~~~lpes-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (567)
++..+.++++|+. |+.. ++.+.+..++. ............ ...........++.++++|.++..
T Consensus 271 ~l~~v~l~~~p~~lp~~~--~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~Ll~n~~f~~~----- 335 (633)
T TIGR00805 271 LLTSIPFFFFPKALPKEG--KRVNVDVHETE--KLEKSEDKSRKK------NSDITKDFPKIIKRLLCNPIYMLV----- 335 (633)
T ss_pred HHHHHHHHhCccccCCcc--cccchhhhhhh--cccccccccchh------hhhhHHHHHHHHHHHHcCcHHHHH-----
Confidence 7755555666654 2110 00000000000 000000000000 000001112346677887744433
Q ss_pred HHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHH-HHHHHHhhHHHHHhhhcc--hHHHHHHHHHHHHHHHH
Q psy3209 362 VTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSV-LLVVTNFACSPLVDIAGR--KTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~ 436 (567)
.+..+.....++.+..|+|.|+++..+. ..++.......+ +.+++.+++|+++||++. |+.+.++.++..++.++
T Consensus 336 ~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 336 ILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3333333345677888999999876554 233344444443 567899999999999984 45666666555555433
Q ss_pred HHHHH-------------------------Hh---------h--------------------------------------
Q psy3209 437 LAACF-------------------------YW---------N-------------------------------------- 444 (567)
Q Consensus 437 ~~~~~-------------------------~~---------~-------------------------------------- 444 (567)
....+ .. .
T Consensus 416 ~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~Cs 495 (633)
T TIGR00805 416 CSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCS 495 (633)
T ss_pred HHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccc
Confidence 22100 00 0
Q ss_pred ------------h-------h-hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHH-HHHHHHHHHH
Q psy3209 445 ------------F-------D-YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF-ALASFLINKF 503 (567)
Q Consensus 445 ------------~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~i 503 (567)
. . ...+++..++..+..++...|.. ..+...+|+++|+.+.|+..++. -+|.+-+|.+
T Consensus 496 Ci~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~ 574 (633)
T TIGR00805 496 CVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPIL 574 (633)
T ss_pred cccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHHHhcCCChhHH
Confidence 0 0 11112222222333334445554 67788899999999999987665 4566789999
Q ss_pred HHHHHHh
Q psy3209 504 YKIVQIN 510 (567)
Q Consensus 504 ~g~l~~~ 510 (567)
+|.+.|.
T Consensus 575 fG~~iD~ 581 (633)
T TIGR00805 575 FGLLIDV 581 (633)
T ss_pred Hhhhhhc
Confidence 9999975
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=213.85 Aligned_cols=321 Identities=15% Similarity=0.079 Sum_probs=219.7
Q ss_pred ccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-----chhHH-HHHHHHHHHHHHHHHHH
Q psy3209 133 LTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-----GRKNT-LLLTSLVFLTSSLLTIF 206 (567)
Q Consensus 133 ~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~ 206 (567)
.+..++++|.+.+| +|+|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~ 76 (356)
T TIGR00901 4 LGLVGNTLPYWLRS-----KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF 76 (356)
T ss_pred chhHHhHHHHHHHH-----cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 45667889999999 99999999999766 455555 89999999998 89886 56778888888777777
Q ss_pred H---hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h--------h
Q psy3209 207 A---QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----Q--------Y 271 (567)
Q Consensus 207 ~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~--------w 271 (567)
. .+++.+....++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ + |
T Consensus 77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w 156 (356)
T TIGR00901 77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW 156 (356)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 7 46667777888889888888899999999999999999999999999999999999888655 6 9
Q ss_pred HHHHHHHHHHHHHHHHHhh-cccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcc
Q psy3209 272 QTLNIILGVIPLVFFITFM-FIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 272 r~~f~~~~~~~~~~~~~~~-~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
|..|++.++..++.++..+ ..||+++. +...++ + +.+....+++++++
T Consensus 157 r~~f~i~ai~~l~~~~~~~~~~~e~~~~----~~~~~~-----------------~----------~~~~~~~~~~~~~~ 205 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTLFLAKEPQED----ASVPKP-----------------L----------TQAVLKPIREFFQR 205 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcc----cccchh-----------------H----------HHHHHHHHHHHHHh
Confidence 9999999887776554444 45664210 000000 0 00011234455555
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHH-HHHHHHHhhHHHHHhhhcchHHHHHHHH
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFS-VLLVVTNFACSPLVDIAGRKTLNMLSAF 428 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 428 (567)
+..+.... .....++ .....+....+.|.++.+.+.+ .+.+......+ +..+++.++++++.||+|+|+.+..+.+
T Consensus 206 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~ 283 (356)
T TIGR00901 206 KNMIQALL-LLLLIVL-YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGI 283 (356)
T ss_pred cCchHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 43211111 1111111 1223456667888888774433 22333444344 5677899999999999999998888877
Q ss_pred HHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWN-------FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFA 494 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 494 (567)
+.++...++.+..... .+.+......++.+++.+...... .++..|.+|+++||+..|+.+...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHh
Confidence 7766655444321111 122334444444455555544444 5899999999999999999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=210.58 Aligned_cols=369 Identities=18% Similarity=0.177 Sum_probs=260.3
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
....|...++..++..+... .++-+..+ ..-|+...+++.++..+...+.++++|.++||+.||++++
T Consensus 12 Fr~lw~a~~iS~lG~~~~~v-------a~~wlv~~-----lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTV-------ALAWLVTQ-----LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 34445555555555444433 33333434 5668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhh
Q psy3209 192 LTSLVFLTSSLLTIFA-----QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVG 266 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 266 (567)
.+-++..+..++.++. .+.+.+++.-++.|++.+...|+-.+++.|..|+++...+.++.+...++..++||.++
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence 9998887766555443 36888999999999999999999999999999999999999999999888888888888
Q ss_pred hhh----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccc
Q psy3209 267 PYI----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS 342 (567)
Q Consensus 267 ~~l----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (567)
+.+ |-.+.|.+.++..++.++....++..+. ++...++ + -...-+.
T Consensus 160 G~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~~~e--~------------------------~~~~l~~ 209 (524)
T PF05977_consen 160 GILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSLPRE--R------------------------FFSALRE 209 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccccchh--h------------------------hhhhHHH
Confidence 875 7788888877665554443333332210 0000000 0 0000112
Q ss_pred cHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcch
Q psy3209 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRK 420 (567)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 420 (567)
.++-+.++|..+..++. ..+..+ ....+...+|.+.++..+. ..-+......+++.++|+++.+++.+|++++
T Consensus 210 G~ryv~~~~~l~~~l~~-~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~ 284 (524)
T PF05977_consen 210 GLRYVRSSPPLRSVLLR-SFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR 284 (524)
T ss_pred HHHHHhcchHHHHHHHH-HHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 23334444433322221 111111 1223345577777655433 4446777788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy3209 421 TLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLI 500 (567)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 500 (567)
+++..+.++.+++.+.+++ ..+.+...+.+++.|.+........ .+...+..|++.||+++++..++...+..+|
T Consensus 285 ~lv~~~~~~~a~~~~~lal----~~~~~~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lG 359 (524)
T PF05977_consen 285 RLVLLASLLFALALLLLAL----SPSFWLALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLG 359 (524)
T ss_pred hhhHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888888777777666655 2355666666677777766544444 4788999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy3209 501 NKFYKIVQINFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 501 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
..+.|.+.+..|...++.+.++..+++.++..
T Consensus 360 sll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 360 SLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887776665555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-23 Score=210.29 Aligned_cols=382 Identities=14% Similarity=0.078 Sum_probs=233.3
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHHhhHHH-HHHH
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLLLTSLVFLTSSLLTIFAQSSYW-LFTS 216 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~ 216 (567)
....+.++ +|.+..+.+++.+.+.....+..+++|+++|| +|||++++++.+++++++++++++++... ++++
T Consensus 37 l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~ 111 (489)
T PRK10207 37 LAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIA 111 (489)
T ss_pred HHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 34455566 99999999999999999999999999999999 99999999999999999999999876554 5588
Q ss_pred HHHHhccccccccchhhhhhcccCCC--cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhh
Q psy3209 217 RLLSGIGKGVGFTVVPMYIAEITDKE--IRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFM 290 (567)
Q Consensus 217 R~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 290 (567)
|+++|+|.|...+...+++.|.+|++ +|+++++++..+.++|..++|.+++++ |||+.|++.++..++.++.+.
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 457789999999999999988888876 899999987553333333333
Q ss_pred cccCCchhHH--hhcCcHHHHHHHH------------HHhcCCCcchHHHH-HH---HH--HHhhhhhcccccHHHHhcc
Q psy3209 291 FIPETPYFHI--IKDNNQVAAKKSL------------EWFKGKSQNITEEL-DE---IV--LTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 291 ~lpesp~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~---~~--~~~~~~~~~~~~~~~~~~~ 350 (567)
+.++..+... .++.+.|.....+ ........ ..... .. .. .-..++.+. + +.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~~--~--~~~r~ 266 (489)
T PRK10207 192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFKL--D--KTGRN 266 (489)
T ss_pred HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcC--C--HHHHH
Confidence 3332211000 0011111101000 00000000 00000 00 00 000000000 0 23333
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhh-ccC----C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchH---
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE-HHG----L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKT--- 421 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--- 421 (567)
+.+.... +++.....+..+....+..+.+.++ ... . ...........+..++..++.+++.||+++|+
T Consensus 267 r~~~~~~---l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 267 KMFVAFV---LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 2221111 1111111111222222344444442 111 1 12333444455666677888899999999886
Q ss_pred ----HHHHHHHHHHHHHHHHHHH---HH-h--hhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHH
Q psy3209 422 ----LNMLSAFLSSGVMIVLAAC---FY-W--NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491 (567)
Q Consensus 422 ----~~~~~~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 491 (567)
.+.++.++.+++++.+... .. . ..+.+..+...++.+++..+. .+...+++.+..|++.+|.++|+.+.
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3566777766665543221 11 1 123455555666677777664 44445888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----------hhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 492 AFALASFLINKFYKIVQI----------NFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 492 ~~~~g~~i~~~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
..++|+.++..+...... ...+.+.|...++..+++.++.++.
T Consensus 423 ~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888754421 1113345666666666655555443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=199.73 Aligned_cols=331 Identities=16% Similarity=0.139 Sum_probs=208.4
Q ss_pred CChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhh
Q psy3209 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 154 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
.+..-.|.+.+.|.++..+.++.+|.++||||||++++++++..++..++.+++.|+..++++|++.|+..|- ..+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 3555679999999999999999999999999999999999999999999999999997788889999999885 578889
Q ss_pred hhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh------HHHHHH----HHHHHHH-HHHHhhcccCCchhHHhh
Q psy3209 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY------QTLNII----LGVIPLV-FFITFMFIPETPYFHIIK 302 (567)
Q Consensus 234 ~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~w------r~~f~~----~~~~~~~-~~~~~~~lpesp~~~~~~ 302 (567)
+++|++++++|+++++.++..+++|.++||.+|+++.- +..|.. ..+++.. ...+.+++|||-. .+
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~r 220 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LR 220 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---ch
Confidence 99999999999999999999999999999999998832 122222 2222333 4456678999832 11
Q ss_pred cCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHH--HHHHHHHHHHhhhHHHHHHhhh
Q psy3209 303 DNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALI--IVLVTSFLQRLSGVSTILSYAS 380 (567)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 380 (567)
|.+ ++.....+... .+.+.... .+..-...++++....++. ..+.+..+... ..+....+..
T Consensus 221 k~~-~~~~~~~~~~~-----~~~~~~~~---------~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~-~l~s~~~~t~ 284 (451)
T KOG2615|consen 221 KRN-DEHSTLQEAAD-----DRLALLKF---------ARIFKVAALRNPPLLDFISVLRIFGLHYFLYL-ELFSGLENTV 284 (451)
T ss_pred hhc-ccccchhhhhh-----hhhhhcch---------hhhhhhhhhcCccccchHHHHHHHHHHHHHHH-HHHHHHHhhH
Confidence 111 11100000000 00000000 0001112233333222111 11111111111 1222333334
Q ss_pred hhhhhccCC---chhHHHHHHHHHHHHHHHhhHHHHHhhhc--chHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy3209 381 TTLPEHHGL---IGRTECLIIFSVLLVVTNFACSPLVDIAG--RKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTS 455 (567)
Q Consensus 381 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (567)
..+...+.. .+.+......++...+.+..-....+|.. .+-.+..+..++.-..+++.. ............
T Consensus 285 ~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~----~~~~~~l~~~s~ 360 (451)
T KOG2615|consen 285 LFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL----ARTPVVLYLGST 360 (451)
T ss_pred HHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc----cccchhhhHHHH
Confidence 444222222 44555666666666666666666666655 333344433333333332222 223444455555
Q ss_pred HHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 456 LFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
+..+..+.....+ +.+.....|++.||+.+|+....+.++-++||.+.|.+..
T Consensus 361 l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 361 LKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 5555555555555 4889999999999999999999999999999999987653
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=206.95 Aligned_cols=358 Identities=11% Similarity=0.064 Sum_probs=233.7
Q ss_pred hccchhhhhhhhhhcccCCCccCChhh-HHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhH
Q psy3209 132 WLTWPSVALYKWQTKEYVLPFELDAEK-VSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS 210 (567)
Q Consensus 132 ~~~~~~~~l~~i~~~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 210 (567)
.....+.+.|.+.++ +|+++.+ .|.+.++++.++++++++.|+++||+|.|+++.++++.+++.+++.++++++
T Consensus 41 ~R~n~s~a~p~L~~e-----lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl 115 (511)
T TIGR00806 41 FRPGESFITPYLLTV-----LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV 115 (511)
T ss_pred hhchHHHHHHHHHHH-----cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888 9999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHH---HHH
Q psy3209 211 YWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGVI---PLV 284 (567)
Q Consensus 211 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~---~~~ 284 (567)
..+.+.|++.|++.|..+ +...++..|+|+++|+++.++...+..+|.++++++++.+ |||+.+.+.-+- ..+
T Consensus 116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~ 194 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTF 194 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999988876 898876554332 223
Q ss_pred HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchH-HHHHHHH-HHhhhhhcccccHHHHhcchhhhHHHHHHHH
Q psy3209 285 FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNIT-EELDEIV-LTTNENMKNKSGYRELVSNYSYRKALIIVLV 362 (567)
Q Consensus 285 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (567)
.++..+++|..++-+ .-+++++.............++.. +..+..+ .....-..-...+++..+++...+. .
T Consensus 195 a~~~a~~LP~~~~sl-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~W-----S 268 (511)
T TIGR00806 195 SVFLALFLKRPKRSL-FFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLW-----S 268 (511)
T ss_pred HHHHHHhCCCCchhh-hhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhh-----h
Confidence 455666778554432 111111000000000000000000 0000000 0000001112234444555544333 3
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy3209 363 TSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC 440 (567)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 440 (567)
++.....++++-+..|........... .-.+..-.+..+.+.+..+..|++-.+..+-..+.++.+...-+.+++ .
T Consensus 269 lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~--~ 346 (511)
T TIGR00806 269 LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVF--W 346 (511)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhh--h
Confidence 333444445666666766666554332 123344445556677788888888555533222333322222222221 1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 441 FYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFY 504 (567)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 504 (567)
.....+.|..++..+++...+.+.+.... .-++.....+.-|...|+++++.-+-..+-..++
T Consensus 347 m~~t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 347 MSQSHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 22355788888888999988887665555 4555555667779999999988777776655543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-23 Score=188.13 Aligned_cols=363 Identities=12% Similarity=0.081 Sum_probs=266.6
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
++.+..+.+..+.---..+.++|+++++.+| +|+|.+..|++.++..+..++.+++..+++.|+|.++.+..+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~-----~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Ll 85 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQD-----LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALL 85 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHH
Confidence 3434444444555555677888999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----h
Q psy3209 196 VFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----Q 270 (567)
Q Consensus 196 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~ 270 (567)
+.++|.++-... +.+.++.+-.+.|.|.+...+..+.++-+.||+ +-+..++++.....+|..+++.+...+ +
T Consensus 86 li~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~g 163 (395)
T COG2807 86 LIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGG 163 (395)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 999999999887 788899999999999999999999999999974 579999999988888777776555444 7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcc
Q psy3209 271 YQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350 (567)
Q Consensus 271 wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
||....+-+.++++.++.|+.-...++ ....+.+..+-..++++
T Consensus 164 W~~aL~~WAl~allAl~~WlPq~~r~~------------------------------------~~~~~~~~~~~~~vw~~ 207 (395)
T COG2807 164 WRGALGFWALLALLALLIWLPQALREQ------------------------------------AASIATKLVSVRKVWRS 207 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc------------------------------------ccccccccccccccccC
Confidence 999999999988887777654321100 00111122233446666
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHH
Q psy3209 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAF 428 (567)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~ 428 (567)
|.- +.+.+++..+...+|....|+|.++.+.+.+ .+++.......+..++.++....+.+|. ++|+.......
T Consensus 208 ~~a-----W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 208 PLA-----WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred chh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 633 3445555555567889999999999999987 6677888888899999999999999975 55666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
++.++.+.+.+.. ....+.. ++++|++.+..+.-.........-.++..+.-.|+.+.++++-+++||.++|++.
T Consensus 283 ~~l~G~~G~~~~P--~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh 357 (395)
T COG2807 283 LMLVGLVGLLLAP--GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH 357 (395)
T ss_pred HHHHHHHHHHHhh--hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence 6666666655422 1122211 3555555444333322233334445577788889999999999999999999999
Q ss_pred Hhhccc-hhhhHHHHHHHHHHHHH
Q psy3209 509 INFGLY-YMFAFYAICSGINVLFT 531 (567)
Q Consensus 509 ~~~g~~-~~~~~~~~~~~~~~~~~ 531 (567)
|..|.. ..+..++...++..+..
T Consensus 358 Da~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 358 DATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHH
Confidence 998754 34444444444444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-22 Score=204.69 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=249.5
Q ss_pred hHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLLLTSLVFLTSSLL 203 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~ 203 (567)
..+...+......+.+|....+ ..++|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++++++.++
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~--~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~ 95 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQ--QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFM 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 3444444444455566655443 11279999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCc---chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q psy3209 204 TIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEI---RGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNI 276 (567)
Q Consensus 204 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~ 276 (567)
.+++++++.++++|++.|++.|...+...++++|++|+++ |+++.+++..+.++|.++|+.+++.+ +|++.|+
T Consensus 96 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~ 175 (475)
T TIGR00924 96 LAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175 (475)
T ss_pred HHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999999998764 88899999999999999999998876 8999999
Q ss_pred HHHHHHHHHHHHhhccc----CCchhHHhhcCcHHHHHHHHH---------------HhcCCCcchHHHHH--HHH--HH
Q psy3209 277 ILGVIPLVFFITFMFIP----ETPYFHIIKDNNQVAAKKSLE---------------WFKGKSQNITEELD--EIV--LT 333 (567)
Q Consensus 277 ~~~~~~~~~~~~~~~lp----esp~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~--~~ 333 (567)
+.++..++.++.+++.+ +.|+. .++.+.++...... ....+......-.. ... ..
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (475)
T TIGR00924 176 LAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIF 253 (475)
T ss_pred HHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 98765544433333322 22210 00001111000000 00000000000000 000 00
Q ss_pred hhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC------chhHHHHHHHHHHHHHHH
Q psy3209 334 TNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL------IGRTECLIIFSVLLVVTN 407 (567)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 407 (567)
..+... +....+.-++ +...++.+++.....+..+.-....++.+..+..+. ...+....+..+..++..
T Consensus 254 ~~~~~~-~~~~~~~~~~---~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~ 329 (475)
T TIGR00924 254 FFRLAF-KPRLDAVARN---KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGS 329 (475)
T ss_pred HHHHHH-hccCCHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHH
Confidence 000000 0000001111 111122222222222222233333344444332111 224456666666666666
Q ss_pred hhHHHHHhhhcc-----hHHH--HHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhccccchhhhhccc
Q psy3209 408 FACSPLVDIAGR-----KTLN--MLSAFLSSGVMIVLAACFYW-----NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSE 475 (567)
Q Consensus 408 ~~~g~l~dr~g~-----~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (567)
++..++..|.+| +... .++.++.++++..+.+.... ..+.+..++..++.+++..+ ..|...++..+
T Consensus 330 p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~-~~p~~~~~~~~ 408 (475)
T TIGR00924 330 PVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELM-ISPLGLSWWTK 408 (475)
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 654443333333 2333 56777777666665432111 12556666667777777665 45666689999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 476 LFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 476 ~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
..|++.||+.+|+......+|..+++.+.....+..++...+...++++++..++.++..|
T Consensus 409 ~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 409 IAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887777667777777777776666666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=201.28 Aligned_cols=381 Identities=14% Similarity=0.146 Sum_probs=260.6
Q ss_pred hhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhc----ccchhHHHHHH-HHHHHHHHHHH
Q psy3209 130 GCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMD----KFGRKNTLLLT-SLVFLTSSLLT 204 (567)
Q Consensus 130 ~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~ 204 (567)
.+..+...+.++.+.++ +|.+....+++..+..+...+.+++.|+++| |+|||+.++++ .....++.++.
T Consensus 17 q~~~~l~~~~l~~yl~~-----lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll 91 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI 91 (477)
T ss_pred HHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 34444455556666677 9999999999999999999999999999999 59999988874 66666777777
Q ss_pred HHHhhHH-----------------HHHHHHHHHhccccccccchhhhhhcccCCCcc--hhHHHHHHHHHHHHHHHHHHh
Q psy3209 205 IFAQSSY-----------------WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIR--GTLSTMFTGHLYGGILFSLCV 265 (567)
Q Consensus 205 ~~~~~~~-----------------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~i~~~l 265 (567)
++++++. .++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~ 171 (477)
T TIGR01301 92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA 171 (477)
T ss_pred HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776643 223333344557777778889999999998865 589999999999999999988
Q ss_pred hhhh-------------------hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHH
Q psy3209 266 GPYI-------------------QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITE 325 (567)
Q Consensus 266 ~~~l-------------------~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (567)
+++. +.|+.|++.+++.++ .++..++++|.|... .++..++ ..+.
T Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~------~~~~------- 236 (477)
T TIGR01301 172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS------EAAP------- 236 (477)
T ss_pred HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh------hccc-------
Confidence 8753 357788887777666 455666788876211 0000000 0000
Q ss_pred HHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc-cCC--------ch----h
Q psy3209 326 ELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH-HGL--------IG----R 392 (567)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~----~ 392 (567)
.++......++++++.-+...+.+..+++..++.+.+++.+..|...++.+. ++. .+ .
T Consensus 237 ---------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G 307 (477)
T TIGR01301 237 ---------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAG 307 (477)
T ss_pred ---------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHH
Confidence 0000111234444444333344444455555555667777888888877642 211 01 1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------hHHHHHHH
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIAGR-KTLNMLSAFLSSGVMIVLAACFYWNFD-----------------YWVSYLFT 454 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 454 (567)
.+....+++...+.+++..++.+|+|+ |....++.++.++++....+......+ .+..++.+
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 234445566666777788889999985 677688877777777766653321110 25566667
Q ss_pred HHHHHHhhccccchhhhhcccCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhhhHHHHHHHHHHHH
Q psy3209 455 SLFGITYSLGIGIIPTTLLSELFPT--NVKSSAASIASIAFALASFLINKFYKIVQINFG--LYYMFAFYAICSGINVLF 530 (567)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 530 (567)
.+.|+.++. ...++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ...++.+.++..++++++
T Consensus 388 ~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~ 466 (477)
T TIGR01301 388 AILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLL 466 (477)
T ss_pred HHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHH
Confidence 777777775 556778999999884 456999999999999999999998888777666 335677778888888888
Q ss_pred HHHhccCCCC
Q psy3209 531 TFFFIFETKG 540 (567)
Q Consensus 531 ~~~~~~~~~~ 540 (567)
..+.+|+.+.
T Consensus 467 ~~~~~~~~~~ 476 (477)
T TIGR01301 467 ALILLPRPRV 476 (477)
T ss_pred HHHhCCCCCC
Confidence 8888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=198.82 Aligned_cols=365 Identities=9% Similarity=0.012 Sum_probs=234.6
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHH--HHHHHHHHHhhhhhh-hhhhcccchhHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWV--VATMDLGNILSPIPS-GYIMDKFGRKNTLLLTSLV 196 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~~~ 196 (567)
..+...++..|+..+...+.+|.+.++ .|.+..++|++ .+.+.+...+.++++ ++..||+||||..++.+.+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-----~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~ 78 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE-----DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHH
Confidence 344556788899999999999999999 99999999997 466678887888888 5589999999887665533
Q ss_pred H-HHHHHHHH---HHhh-HHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy3209 197 F-LTSSLLTI---FAQS-SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY--- 268 (567)
Q Consensus 197 ~-~i~~~~~~---~~~~-~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~--- 268 (567)
. ++.....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++++.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222 1222 33445555666677777777777888888888888888888888888888888865544
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHH
Q psy3209 269 -IQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYREL 347 (567)
Q Consensus 269 -l~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (567)
+|||..|++.+++.++..+..++++|++. .++++ +.....++++.
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~ 204 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPEA-------------------------------PLARRASLFRF 204 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Ccccc-------------------------------chhhHHHHHHH
Confidence 49999999999888765444444443321 00000 00011235667
Q ss_pred hcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHH-HHHHHHHhhHHHHHhhhcchHHHHH
Q psy3209 348 VSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFS-VLLVVTNFACSPLVDIAGRKTLNML 425 (567)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~ 425 (567)
+++|..+......++.. ........+.+.++.+.+.+ ...+......+ ...+++.++.|++.||+|+|+.+..
T Consensus 205 l~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 279 (390)
T TIGR02718 205 FRRPLAWSLLALALLSA-----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL 279 (390)
T ss_pred HcCcCHHHHHHHHHHHH-----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77665443222222211 12334455677788776544 33444444444 3566778899999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhccccchhhhhcccCCCh-hhHHHHHHHHHHHHHHHHHHHHH
Q psy3209 426 SAFLSSGVMIVLAACFYW--NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPT-NVKSSAASIASIAFALASFLINK 502 (567)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~i~~~ 502 (567)
+..+..+..+........ ............+.+++.+...... .+...+..++ +.+++.+++.+...++|..++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~ 358 (390)
T TIGR02718 280 GVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASS 358 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 766553333222211110 0111111222222223333333333 3455555554 78999999999999999999999
Q ss_pred HHHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 503 FYKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 503 i~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
+.|.+.+..|+...|.+.+++.+++.+
T Consensus 359 ~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 359 IAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999988888877766666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-21 Score=195.59 Aligned_cols=381 Identities=12% Similarity=0.067 Sum_probs=220.8
Q ss_pred hhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy3209 140 LYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLLLTSLVFLTSSLLTIFAQ-SSYWLFTSR 217 (567)
Q Consensus 140 l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R 217 (567)
...+.++ +|++..+.+++.+.+........+++|+++|| +|||++++++.++++++.+++++++ +.+.++++|
T Consensus 45 ~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~ 119 (500)
T PRK09584 45 AVYLVKQ-----LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM 119 (500)
T ss_pred HHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3344466 99999999999888877767777899999999 5999999999999999999999875 566777889
Q ss_pred HHHhccccccccchhhhhhcccCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH---
Q psy3209 218 LLSGIGKGVGFTVVPMYIAEITDKEI--RGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFIT--- 288 (567)
Q Consensus 218 ~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~--- 288 (567)
+++|++.|...+...+++.|++|+++ |..++++++.+.++|..++|.+++++ |||+.|++.++..++.++.
T Consensus 120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999998654 45678888899999999999888876 8999999887644442222
Q ss_pred -hhcccCCchhHHhhcCcHHHHHHHH-----------HHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHh-cchhhhH
Q psy3209 289 -FMFIPETPYFHIIKDNNQVAAKKSL-----------EWFKGKSQNITEELDEIVLTTNENMKNKSGYRELV-SNYSYRK 355 (567)
Q Consensus 289 -~~~lpesp~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 355 (567)
..+++|.++. .++++.+...... ......+.+.....-......... ...++.. ..+..++
T Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 273 (500)
T PRK09584 200 CQRWVKQYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVV----IFGKEAFAMKGAARR 273 (500)
T ss_pred hHHHhccCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHhhcCHHHHH
Confidence 2234442110 0000011100000 000000000000000000000000 0000000 0011122
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhh-----c----cCC-chhHHHHHHHHHHHHHHHhhH----HHHHhhhcchH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPE-----H----HGL-IGRTECLIIFSVLLVVTNFAC----SPLVDIAGRKT 421 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~-~~~~~~~~~~~~~~~~~~~~~----g~l~dr~g~~~ 421 (567)
+.+..+.+... ...++......+..+.. . .+. ........+..+..++..++. +++.+|.+..+
T Consensus 274 ~~~~~~~~~~~--~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~ 351 (500)
T PRK09584 274 KMIVAFILMLE--AIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPH 351 (500)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHH
Confidence 22222221111 11223333344444322 1 011 224444555555555555555 44445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHH
Q psy3209 422 LNMLSAFLSSGVMIVLAACFYWN-----FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA 496 (567)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 496 (567)
.+.++.++.+++++.+....... .+.+..+...++.+++-.+ ..|...+++.+..|++.||.++|+......+|
T Consensus 352 ~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~-~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g 430 (500)
T PRK09584 352 KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM-ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGA 430 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 77888888888877766532210 1234455555666666554 55666689999999999999999887776666
Q ss_pred HHHHHHHHHHHHH----------hhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 497 SFLINKFYKIVQI----------NFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 497 ~~i~~~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
..++..+.+.... ..++...|...++.+++.+++.+..
T Consensus 431 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 431 ALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655542210 1124456666666665554444443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-20 Score=180.95 Aligned_cols=367 Identities=17% Similarity=0.141 Sum_probs=244.4
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG-RKNTLLLTSLVFLTSSLLT 204 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~ 204 (567)
.|...+..+...|.+|...++ .|.|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++.....
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~-----~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLES-----RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555556666777877777 8999999999999999999999999999999986 5788888888888887788
Q ss_pred HHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCC--cchhHHHHHHHHHHHHHHH-HHHhhhhhhh---HHHHHHH
Q psy3209 205 IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKE--IRGTLSTMFTGHLYGGILF-SLCVGPYIQY---QTLNIIL 278 (567)
Q Consensus 205 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i-~~~l~~~l~w---r~~f~~~ 278 (567)
...++++.+++.-++..+......|...++..+...++ +-|+.-.+-+.++.++... +..+.+..++ .+.+++.
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIA 165 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 88889999888888888888888888888877776532 2233333333333333222 1223333322 3455666
Q ss_pred HHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHH
Q psy3209 279 GVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALI 358 (567)
Q Consensus 279 ~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (567)
++.+++.....+.+|+.|... +.+ .+.++....+..+++++|+.....+
T Consensus 166 ~~~~~ll~~~~l~lp~~~~~~---~~~----------------------------~~~~~~~~~~~~~llk~~~~~~Fll 214 (400)
T PF03825_consen 166 AILSLLLAGFALFLPKTPPKR---SAK----------------------------ESVKKLLGLDALKLLKNPRFLVFLL 214 (400)
T ss_pred HHHHHHHHHHHHhCCCCcccc---ccC----------------------------CCcccccchHHHHHhcCccHHHHHH
Confidence 655555555556678876210 000 0001111223456788775553333
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
..+... ........|.+.|+++.++ . ...+....+..+..++.-.+.+++..|+|.++++.++.+...+=..+
T Consensus 215 ~~~l~~-----~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 215 AAFLIG-----ISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 322222 2345567788888988874 2 33445555667788999999999999999999999999888877777
Q ss_pred HHHHHHhhhhhHHHHHH----HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q psy3209 437 LAACFYWNFDYWVSYLF----TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIA-FALASFLINKFYKIVQINF 511 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~ 511 (567)
+.... .+.+..+.. ..+-+..++....... .++.+.+|++.|+++.++.+.. ..+|..+|..+.|++.|+.
T Consensus 290 ~a~~~---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~ 365 (400)
T PF03825_consen 290 YAYFS---DPWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF 365 (400)
T ss_pred HHHhc---CCcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66521 122222222 2346777766555554 8999999999999999998775 5799999999999999998
Q ss_pred ccchhh------hHHHHHHHHHHHHHHHhccC
Q psy3209 512 GLYYMF------AFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 512 g~~~~~------~~~~~~~~~~~~~~~~~~~~ 537 (567)
|.+..+ .+.+++.++..++.+++.|+
T Consensus 366 g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 366 GARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 866433 33444444444444444443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-20 Score=187.41 Aligned_cols=327 Identities=15% Similarity=0.072 Sum_probs=205.6
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhc----ccch-hHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMD----KFGR-KNTLLLTSLVFLTSSLLTIFAQ------SSYWLFTSRLLS 220 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~------~~~~l~~~R~l~ 220 (567)
+|++...+|.+..+.-+.-++..++.|.++| |+|| |+.++++....+++.+++-..+ .+..+++.-++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6698 6677778888887766664432 134556667777
Q ss_pred hccccccccchhhhhhccc-CCCcchhHHHHHHHHHHHHHHHHHHhhh-h---h-------hhHHHHHHHHHHHHH-HHH
Q psy3209 221 GIGKGVGFTVVPMYIAEIT-DKEIRGTLSTMFTGHLYGGILFSLCVGP-Y---I-------QYQTLNIILGVIPLV-FFI 287 (567)
Q Consensus 221 G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~-~---l-------~wr~~f~~~~~~~~~-~~~ 287 (567)
+++.....+.-.+++.|+. ++++|.+..++-..+..+|.++.+.+.. . + +|+....+.+++.++ .++
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999998 5889999888866655655444333221 1 1 466666666666555 334
Q ss_pred HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHH
Q psy3209 288 TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQ 367 (567)
Q Consensus 288 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
.++..+|.+... +.+. ..+++...+..++.+++++.++......++..
T Consensus 197 ~~~~~~e~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~--- 244 (473)
T PRK10429 197 TLRNVHEVYSSD---NQVS--------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYN--- 244 (473)
T ss_pred HHcCceecCCcc---cccc--------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHH---
Confidence 444466653100 0000 00000111122344455544433222222221
Q ss_pred HhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q psy3209 368 RLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACF-YWNF 445 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 445 (567)
........+.+.+++...+. ...+.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.... ....
T Consensus 245 --~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
T PRK10429 245 --IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH 322 (473)
T ss_pred --HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 12333344444444444332 2223444455577888999999999999999998877776555554443311 1122
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhcccCCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFP-------TNVKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
+.+..++..++.+++.+... +..+++.+|..+ .+..|...|..+++..++..+++.+.|.+.+..|+
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444455555555433 444578888855 44467788999999999999999999999987776
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.49 Aligned_cols=365 Identities=15% Similarity=0.083 Sum_probs=229.9
Q ss_pred HHhhhhHHHhhhhccchh-hhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc-----hhHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPS-VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG-----RKNTLLLT 193 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~ 193 (567)
.++...++..|+. .... .+.|.+.++ +|++..+++...+...+...+-.+ +|+++||++ ||+.++++
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~-----lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~ 101 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDD-----LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLS 101 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHH
Confidence 3344456777777 4444 445555566 899999999999999999999777 999999998 78888888
Q ss_pred HHHHH-HHHHHHHHHhhHHHHH-HHHHHHhccccccccchhhhhhcccCCCcchhHHHHHH---HHHHHHHHHHHHhhhh
Q psy3209 194 SLVFL-TSSLLTIFAQSSYWLF-TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFT---GHLYGGILFSLCVGPY 268 (567)
Q Consensus 194 ~~~~~-i~~~~~~~~~~~~~l~-~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~---~~~~~G~~i~~~l~~~ 268 (567)
.++.+ ++....+..++...+. +++++.+++.+...++.-++..|..+ +++....+..+ ....+|.++++.+++.
T Consensus 102 ~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~ 180 (468)
T TIGR00788 102 GLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP 180 (468)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 77763 4434344445544444 48999999999999999999999998 55544333332 3334677777666665
Q ss_pred h----hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccH
Q psy3209 269 I----QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGY 344 (567)
Q Consensus 269 l----~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (567)
+ +|+..|++.+++.++..+..+++||++... ..+.++++.... . . ..... .+..++.....
T Consensus 181 l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~-~~~~~~~~~~~~-~------~-~~~~~------~~~~~~~~~~l 245 (468)
T TIGR00788 181 LLDKTLTRILFLITAALLLLQLFVSNLSKERRAFV-RPRIGTYLEMNM-A------L-LTLGV------LANVKVQILGL 245 (468)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhcccccccc-cccccccchhhh-h------h-hhhhH------HHHHHHHHHHH
Confidence 4 899999998888777666667788863100 000000000000 0 0 00000 00000111234
Q ss_pred HHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHH
Q psy3209 345 RELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLN 423 (567)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 423 (567)
+..+++|..++.....++. +.........+..+.+ ...+.+ ...+......+++.+++..+.+++.+|++.|+++
T Consensus 246 ~~~l~~~~i~~~l~fifl~-~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l 321 (468)
T TIGR00788 246 RGAIQLLEIAKPLIFIFLS-YANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLF 321 (468)
T ss_pred HHHHhcHHHHHHHHHHHHH-HhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 4445555444433222221 1111000000000111 122222 5566777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhh-----hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHH
Q psy3209 424 MLSAFLSSGVMIVLAACF-YWN-----FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALAS 497 (567)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 497 (567)
.++.++..++.+...+.. ..+ ...+......++.+++.++.+.+.. .++++..|++.+|+..++.+.+.++|.
T Consensus 322 ~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 322 GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 888888777665432110 000 1122333344555666666677775 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy3209 498 FLINKFYKIVQINFG 512 (567)
Q Consensus 498 ~i~~~i~g~l~~~~g 512 (567)
.+++.+++.+.+..|
T Consensus 401 ~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 401 SVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=182.21 Aligned_cols=321 Identities=14% Similarity=0.086 Sum_probs=205.7
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc----cch-hHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDK----FGR-KNTLLLTSLVFLTSSLLTIFAQS------SYWLFTSRLLS 220 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~ 220 (567)
+|++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+....+++.++....++ +..+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 787 45666777777777766555543 45566667777
Q ss_pred hccccccccchhhhhhccc-CCCcchhHHHHHHHHHHHHHHHHHHhh----hh-------hhhHHHHHHHHHHHHHHH-H
Q psy3209 221 GIGKGVGFTVVPMYIAEIT-DKEIRGTLSTMFTGHLYGGILFSLCVG----PY-------IQYQTLNIILGVIPLVFF-I 287 (567)
Q Consensus 221 G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~----~~-------l~wr~~f~~~~~~~~~~~-~ 287 (567)
+.+.......-.++.+|+. ++++|.+..++...+..+|..+++.+. .. .+|+..+.+.++++++.. +
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7776666667778899988 457899888887777777666655432 22 268888887777776643 3
Q ss_pred HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHH
Q psy3209 288 TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQ 367 (567)
Q Consensus 288 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
.++..+|.++ +.+ +++.+....++.+++++.++......++.....
T Consensus 200 ~~~~~~e~~~-----~~~-----------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~ 245 (444)
T PRK09669 200 CFFMTKERYT-----PEV-----------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAV 245 (444)
T ss_pred HhCCeEEecC-----CCC-----------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 4444555321 000 000111234566777776554333222222221
Q ss_pred HhhhHHHHHHhhhhhhhhccCCc-hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 368 RLSGVSTILSYASTTLPEHHGLI-GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
. ......+.+.+...+.. ..........+..+++.++.+++.||+|+|+.+..+.++..+..+.+.. ....+
T Consensus 246 ~-----~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~--~~~~~ 318 (444)
T PRK09669 246 V-----TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF--IPPSN 318 (444)
T ss_pred H-----HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hCcch
Confidence 1 11112222222222221 2223333445667788889999999999999888776655543332222 11233
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFP-------TNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
.+..++..++.+++.+. ..+..+++++|..+ .+..|...|+.+.+..+|.++++.+.|.+.+..|+.
T Consensus 319 ~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 319 VWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44445555666666664 44556688888874 334577789999999999999999999999988763
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=170.96 Aligned_cols=394 Identities=11% Similarity=0.109 Sum_probs=266.6
Q ss_pred hhhhHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhH
Q psy3209 109 IMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKN 188 (567)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 188 (567)
.+...+||++++..++..+..++.-.-++++-.....- |+ +....-|+.-+|++.+....+++.|+.|++|-|.
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-----Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~ 110 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-----YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRT 110 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-----hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHH
Confidence 34567889999999999999888777777776666665 77 7777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh------hHH--HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHH
Q psy3209 189 TLLLTSLVFLTSSLLTIFAQ------SSY--WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGIL 260 (567)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~------~~~--~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 260 (567)
.++++..+.++|..+-..+. .++ ..+.+..+.+.+.-........+..-||++++|..+..+-..+..+|..
T Consensus 111 a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva 190 (480)
T KOG2563|consen 111 ALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA 190 (480)
T ss_pred HHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH
Confidence 99999999999999877753 344 6778899999998888777778888999999999999999988889988
Q ss_pred HHHHhhhhh----------hhHH--HHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHH
Q psy3209 261 FSLCVGPYI----------QYQT--LNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEEL 327 (567)
Q Consensus 261 i~~~l~~~l----------~wr~--~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (567)
++.++.+.+ .|.. .|+..++++.+ +.+..+..++.|+.- .....
T Consensus 191 vg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~s~-------------------- 247 (480)
T KOG2563|consen 191 VGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSASQ-------------------- 247 (480)
T ss_pred HHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CchhH--------------------
Confidence 888887776 3544 34444444433 222223333333210 00000
Q ss_pred HHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHH
Q psy3209 328 DEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVT 406 (567)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 406 (567)
...++..-..+.++.++++.+ +...+.+...+..++.....+...+...++. ..++.......++++++
T Consensus 248 -----~~~~~~~f~~si~~~~~n~~F-----~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlg 317 (480)
T KOG2563|consen 248 -----AALQDASFPKSIKSCFKNRQF-----IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLG 317 (480)
T ss_pred -----hhhhcCcHHHHHHHHHcCccH-----HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHH
Confidence 000011233456677776533 2333334444444555555555333333333 56778888888999999
Q ss_pred HhhHHHHHhhhcchHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHH
Q psy3209 407 NFACSPLVDIAGRKTLN-MLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA 485 (567)
Q Consensus 407 ~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 485 (567)
+++.|.+.||.++-+.. ++......++...+..........++......+++++ +.+..|+..-+..|..-|..-++.
T Consensus 318 a~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~-~~~~~Pig~ElgvE~TyPv~E~tS 396 (480)
T KOG2563|consen 318 ALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF-GTGYLPIGFELGVETTYPVAEGTS 396 (480)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh-hcCCCCcceeeeeeeccccCCccc
Confidence 99999999999875543 3333333333222222121122334444444445544 345677777788888666778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhhHHHHHHHHHHHHHHHhccCCCCCC
Q psy3209 486 ASIASIAFALASFLINKFYKIVQINFG----LYYMFAFYAICSGINVLFTFFFIFETKGKS 542 (567)
Q Consensus 486 ~g~~~~~~~~g~~i~~~i~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (567)
.|+.++.+++-+++-.++.+...+..+ +...-+.....+.+..++..++.++.++++
T Consensus 397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 999999999999999999999888777 444445555555566666555555444433
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=165.92 Aligned_cols=364 Identities=12% Similarity=0.099 Sum_probs=236.3
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLL 191 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~ 191 (567)
.++...++..|+..|-.+++....+....+...| .+++.++..++.+.|..-..+-++++|++.|| +|-|..-+
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-----~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gti 114 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD-----SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTI 114 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcc-----cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHH
Confidence 4556667777777888888888888887777777 89999999999999999999999999999995 68887766
Q ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 192 LTSLVFLTSSLLTIF---AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
+-++...+|.++.+. .+.+|.++++||+.|+|.-...++-..|..-|+..|+.+.++|+.....-+|..+-..+.++
T Consensus 115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHH
Confidence 666666677776654 68899999999999999887778888999999999999999999998888887655444444
Q ss_pred h-hhHHHHH---HHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccH
Q psy3209 269 I-QYQTLNI---ILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGY 344 (567)
Q Consensus 269 l-~wr~~f~---~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (567)
+ +.-.-++ ....+++.+++......-+-.......-.++++++.+.+-.+... +...+
T Consensus 195 ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~G------------------e~pkL 256 (459)
T KOG4686|consen 195 LYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLG------------------EEPKL 256 (459)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCccc------------------CCccc
Confidence 3 1000000 000011100000000000000000001112222222222111111 11111
Q ss_pred HHH--hcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcch
Q psy3209 345 REL--VSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRK 420 (567)
Q Consensus 345 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 420 (567)
.+. +. |.+|. +..++. ........+....|.++++..+. ..++.+.........+.+++.|.++||+|++
T Consensus 257 tdv~~f~-ppfw~--~~iicv---~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n 330 (459)
T KOG4686|consen 257 TDVNTFY-PPFWV--LVIICV---LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN 330 (459)
T ss_pred ccccccC-ccHHH--HHHHHH---HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce
Confidence 111 11 12221 111111 12223456777788888887765 3344555555666778888999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy3209 421 TLNMLSAFLSSGVMI-VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL 499 (567)
Q Consensus 421 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 499 (567)
...+.+..+..+..- .+.+ +.+.+...+++.|..+++. ....|..++.++|.+.-|++.|++..+.++|-++
T Consensus 331 ~~wv~~a~~~tl~~H~~l~F------t~lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 331 LWWVASACILTLLGHSGLFF------TFLSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred ehhHHHHHHHHHHHhhhHHh------hhccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 777666554443332 2222 3444556667777766653 3334678889999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy3209 500 INKFYKIVQINFG 512 (567)
Q Consensus 500 ~~~i~g~l~~~~g 512 (567)
.|.++|.+.|.-|
T Consensus 404 i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 404 IPIIAGFIADGDG 416 (459)
T ss_pred HhhhhheeecCCC
Confidence 9999999998766
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=168.41 Aligned_cols=368 Identities=13% Similarity=0.133 Sum_probs=216.2
Q ss_pred hhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH--HHHHH-HHHH
Q psy3209 130 GCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF--LTSSL-LTIF 206 (567)
Q Consensus 130 ~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~i~~~-~~~~ 206 (567)
.+..++..|..|.-.++ ..|++.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+. ..+.+ ...+
T Consensus 20 Ff~~gi~~pF~~iWL~~----~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~ 95 (412)
T PF01306_consen 20 FFIWGIFLPFFPIWLTQ----VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF 95 (412)
T ss_dssp HHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHcc----ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554432 16999999999999999999999999999999999666544433222 22222 2223
Q ss_pred HhhH-HHHHHHHHHHhccccc----cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHH
Q psy3209 207 AQSS-YWLFTSRLLSGIGKGV----GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIIL 278 (567)
Q Consensus 207 ~~~~-~~l~~~R~l~G~~~g~----~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~ 278 (567)
.+-. ..+.++-++.|+..+. ..|+.-+++.++.. +.+.=.|-.-+..++|.+++..+++.+ +-+..||+.
T Consensus 96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~ 173 (412)
T PF01306_consen 96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIA 173 (412)
T ss_dssp HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHH
Confidence 2211 1122333333444343 33444444444331 122223333445555555555555544 567788877
Q ss_pred HHHHHHHHHHhhc-ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHH
Q psy3209 279 GVIPLVFFITFMF-IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKAL 357 (567)
Q Consensus 279 ~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (567)
...+++..++.++ -|+.++.....+... .++++.+.+...+++++|++|...
T Consensus 174 s~~~~il~lll~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~l~k~~~fw~~~ 226 (412)
T PF01306_consen 174 SAAAIILLLLLLLLKPDVPPQAEVADALG---------------------------AKKDKVSLKDVLSLFKMRNFWFFV 226 (412)
T ss_dssp HHHHHHHHHHHHSS---SSSSS-SSTTSS---------------------------S------HHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCchhhhhhcccc---------------------------cCCCCCcHHHHHHHhcchhHHHHH
Confidence 7666654444333 344332110000000 000011112345677777666544
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-----chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHH
Q psy3209 358 IIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-----IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSG 432 (567)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 432 (567)
+........ +..+-...+.|+...... ...+.......+..++.-.+..++.+|+|.|+.++++..++.+
T Consensus 227 l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~i 301 (412)
T PF01306_consen 227 LFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAI 301 (412)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 433333322 233333344444433322 1233455566677888999999999999999999999888888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q psy3209 433 VMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
=....++. .+.+...+.=.+-++.+.+...+.. -|+.+.+|++..++...+. +...++|.++.+.+.|.++|+.
T Consensus 302 Ri~~~~~~----~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~ 376 (412)
T PF01306_consen 302 RIIGSGFA----TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI 376 (412)
T ss_dssp HHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh----cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence 87776652 3566666666667776666555554 7999999999999999885 6778999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 512 GLYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
|++.++++++++.+...++..+.+++.++
T Consensus 377 G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 377 GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99989999999888888888777765544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=170.84 Aligned_cols=319 Identities=13% Similarity=0.086 Sum_probs=194.9
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc----chhHHH-HHHHHHHHHHHHHHHHHh-------hHHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKF----GRKNTL-LLTSLVFLTSSLLTIFAQ-------SSYWLFTSRLL 219 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~-------~~~~l~~~R~l 219 (567)
+|++..++|.+.+...+..++..++.|+++||. |||+.+ .++.+...+..++....+ ....+++.-++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 799999999999999999999999999999986 777644 556555554444432111 22334445667
Q ss_pred HhccccccccchhhhhhcccCC-CcchhHHHHHHHH-----HHHHHHHHHHhhhhh------hhHHHHHHHHHHHHH-HH
Q psy3209 220 SGIGKGVGFTVVPMYIAEITDK-EIRGTLSTMFTGH-----LYGGILFSLCVGPYI------QYQTLNIILGVIPLV-FF 286 (567)
Q Consensus 220 ~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~-----~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~-~~ 286 (567)
.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|.++... +|.....+.++++++ .+
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 7888888877777777776644 6788776655433 234455556555443 121112222333333 22
Q ss_pred HHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHH
Q psy3209 287 ITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFL 366 (567)
Q Consensus 287 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (567)
+.+...||++.. + .++......++.+++++.++...+..++.
T Consensus 199 ~~~~~~~e~~~~-----~------------------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~--- 240 (448)
T PRK09848 199 ICFKSTRENVVR-----I------------------------------VAQPSLKISLQTLKRNRPLFMLCIGALCV--- 240 (448)
T ss_pred HHHcCcEeccCC-----C------------------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHH---
Confidence 333345665310 0 00001122356677776554332222222
Q ss_pred HHhhhHHHHHHhhhhhhhhccCCch-hH-HHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 367 QRLSGVSTILSYASTTLPEHHGLIG-RT-ECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
+........+.+.++++..+... .. .......++.+++.++.+++.||+++|+.+.++.++..++.+.+.+. ..
T Consensus 241 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--~~ 316 (448)
T PRK09848 241 --LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--SV 316 (448)
T ss_pred --HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--Cc
Confidence 22233444556666665544322 22 22223345677888999999999999999999888777776655431 12
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN-------VKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
.+.+..++..++.+++.+... +..++..+|..|.+ ..|...|+.++...+|..+++.+.+.+.+..|+
T Consensus 317 ~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 317 WSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 233444444555666655544 34457777777643 469999999999999999999999999887765
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-17 Score=163.50 Aligned_cols=351 Identities=15% Similarity=0.113 Sum_probs=196.6
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhcccccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-GRKNTLLLTSLVFLTSSLLTIFAQ-SSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~ 229 (567)
+|.++.+.+.+.+.+.....++++++|+++||+ |||++++++.++.+++.+++++.. +...++++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 899999999999999999999999999999999 999999999999999988777643 223344444455566666677
Q ss_pred chhhhhhcccCCC--cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcc----cCCchhH
Q psy3209 230 VVPMYIAEITDKE--IRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFI----PETPYFH 299 (567)
Q Consensus 230 ~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~l----pesp~~~ 299 (567)
...++++|.+|++ +|..+.++...+.++|..++|.+.+.+ ||++.|.+.++..++.++.+++. ++...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~-- 197 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG-- 197 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--
Confidence 7788999999875 789999999999999999999998887 89999998765443333332221 11100
Q ss_pred HhhcCcHHHHHHHH---HHhcCCCc---chH-HHHH-HHHHHh-hhhhcccc-----cHHHHhcchhhhHHHHHHHHHHH
Q psy3209 300 IIKDNNQVAAKKSL---EWFKGKSQ---NIT-EELD-EIVLTT-NENMKNKS-----GYRELVSNYSYRKALIIVLVTSF 365 (567)
Q Consensus 300 ~~~~~~~~~~~~~~---~~~~~~~~---~~~-~~~~-~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 365 (567)
.+++..++.+... ....-.-. -.. .... ...... ....-... -.+.. .++.-++++...+.+..
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~er~r~~~~~~l~~ 275 (493)
T PRK15462 198 -VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQRKELGLIVTLTF 275 (493)
T ss_pred -CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHhhHHHHHHHHH
Confidence 0000000000000 00000000 000 0000 000000 00000000 00000 01112223222222111
Q ss_pred HH--Hhhh----HHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcc--h-----HHHHHHHHHH
Q psy3209 366 LQ--RLSG----VSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGR--K-----TLNMLSAFLS 430 (567)
Q Consensus 366 ~~--~~~~----~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~-----~~~~~~~~~~ 430 (567)
+. .+.. ...+..|........ .+. ..+.+...+..+..++.+++.+++-.|..+ | .-..++.+++
T Consensus 276 ~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~ 355 (493)
T PRK15462 276 FSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLM 355 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 11 1111 111122221111111 111 345566667777777777776666566532 2 1256677777
Q ss_pred HHHHHHHHHHHHh-h----hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHH-HHHHHHHHHHH
Q psy3209 431 SGVMIVLAACFYW-N----FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF-ALASFLINKFY 504 (567)
Q Consensus 431 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~i~ 504 (567)
+++.+++.+.... + .+.++.+...++...+- ....|+..+.++++.|++.+|..+|+..... .+|..++..+.
T Consensus 356 g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gE-l~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~ 434 (493)
T PRK15462 356 SAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAE-LFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIA 434 (493)
T ss_pred HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHH-HHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666543321 1 13344444444554443 4578888899999999999999999986533 46665555554
Q ss_pred HHH
Q psy3209 505 KIV 507 (567)
Q Consensus 505 g~l 507 (567)
+..
T Consensus 435 ~~~ 437 (493)
T PRK15462 435 DQT 437 (493)
T ss_pred HHh
Confidence 443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-18 Score=171.93 Aligned_cols=323 Identities=19% Similarity=0.259 Sum_probs=231.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhc----ccchhH-HHHHHHHHHHHHHHHHHHH-h-------hHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMD----KFGRKN-TLLLTSLVFLTSSLLTIFA-Q-------SSYWLFTSRL 218 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~R~ 218 (567)
+|+++...|++..+..+..++..|+.|.++| |+|||+ .++++....+++.+++... + ....+.+.-+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 899765 5556888888888877766 4 2344577777
Q ss_pred HHhccccccccchhhhhhcccC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHH-
Q psy3209 219 LSGIGKGVGFTVVPMYIAEITD-KEIRGTLSTMFTGHLYGGILFSLCVGPYI-----------QYQTLNIILGVIPLVF- 285 (567)
Q Consensus 219 l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~- 285 (567)
+..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+ +|++..++.+++.++.
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7899999888888999999997 47899999998888888776544443332 5899888888887774
Q ss_pred HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHH
Q psy3209 286 FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSF 365 (567)
Q Consensus 286 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (567)
.+..+..+|.++.. . ..+++.+.+..+++++++|.++......++...
T Consensus 192 ~i~~~~~ke~~~~~-----~---------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 192 LITFFFVKERSVEV-----T---------------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred hhhhheeeeccccc-----c---------------------------ccccccccccchhhhcccchHHHHHHHHHHHHh
Confidence 44555567721100 0 001122234456777877655543332222222
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 366 LQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
+........+.+.+...+. ...+.......+..+++.++.++++||+|+|+.+..+..+..++.+++.+...
T Consensus 240 -----~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-- 312 (428)
T PF13347_consen 240 -----AFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-- 312 (428)
T ss_pred -----hhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence 2233333444444444333 33445556677888999999999999999999999999888888777665321
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPT-------NVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
.+.+..++..++.+++.+..+ ...+++.+|+.+. +..|...|+.++...++..+++.+.+.+.+..|+.
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 456666777777777777644 5556888988763 44689999999999999999999999998877654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-16 Score=163.53 Aligned_cols=319 Identities=14% Similarity=0.090 Sum_probs=198.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc----cchh-HHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDK----FGRK-NTLLLTSLVFLTSSLLTIFAQS------SYWLFTSRLLS 220 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~ 220 (567)
+|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++.+++-..++ +..+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999995 7886 5555677778877766654442 34456666777
Q ss_pred hccccccccchhhhhhcccC-CCcchhHHHHHHHHHHHHHHHHHHhhhh----h-------hhHHHHHHHHHHHHHHH-H
Q psy3209 221 GIGKGVGFTVVPMYIAEITD-KEIRGTLSTMFTGHLYGGILFSLCVGPY----I-------QYQTLNIILGVIPLVFF-I 287 (567)
Q Consensus 221 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~----l-------~wr~~f~~~~~~~~~~~-~ 287 (567)
.++.......-.++..|..+ +++|.+..++...+..+|..+++.+... + +|+....+.++++++.. +
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888777777888999887 6899999999998888887666554322 1 47777766666665533 3
Q ss_pred HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHH
Q psy3209 288 TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQ 367 (567)
Q Consensus 288 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
.+...+|.++. + +++...+..++..++++.++......+ +...
T Consensus 200 ~~~~~kE~~~~-----~------------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~~~-~~~~- 242 (460)
T PRK11462 200 CFFTTKERVEA-----P------------------------------PTTTSMREDLRDIWQNDQWRIVGLLTI-FNIL- 242 (460)
T ss_pred HHhcceeccCC-----C------------------------------ccCCCHHHHHHHHhCChHHHHHHHHHH-HHHH-
Confidence 33344554210 0 000001223455666655443222111 1111
Q ss_pred HhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 368 RLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
..........|...|. .+. ...........+..+++.+++++++||+++|+....+..+..+..+++.+ ....+
T Consensus 243 ~~~~~~~~~~y~~~y~---~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~--~~~~~ 317 (460)
T PRK11462 243 AVCVRGGAMMYYVTWI---LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF--VPMQA 317 (460)
T ss_pred HHHHHHhHhhhhhhhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hchhH
Confidence 1112223333444433 222 22234455667788889999999999999998876555444333333222 11222
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFP-------TNVKSSAASIASIAFALASFLINKFYKIVQINFGL 513 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 513 (567)
.+..++..++.+++.+. ..++.+++..|..+ .+..|...+..+....+|.++++.+.|.+.+..|+
T Consensus 318 ~~~~~~~~~l~g~~~~~-~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 318 SITMFVFIFVIGVLHQL-VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22233333444444432 34444566676654 33346666777789999999999999999887665
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-16 Score=161.40 Aligned_cols=344 Identities=17% Similarity=0.198 Sum_probs=229.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH-HHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhccccccccchhh
Q psy3209 157 EKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL-TSLVFLTSSLLTIFA-Q-SSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 157 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~-~-~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++++..+. + +++...+.-++.-++.+...+...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999987765555 455555566666664 3 3444455555666677777788889
Q ss_pred hhhcccCCCcc--------------------------hhHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHH
Q psy3209 234 YIAEITDKEIR--------------------------GTLSTMFTGHLYGGILFSLCVGPYI------------QYQTLN 275 (567)
Q Consensus 234 ~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~l~~~l------------~wr~~f 275 (567)
++.|+.+++++ ++..+.-.....+|.++..++.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 8888888888888877766655443 247778
Q ss_pred HHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
.+.++.-++ .+..++++||.|+.. ..+....... ...++ -...++++.+.|
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~--------------~g~~~----------l~~t~k~~~~~~--- 281 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLR--------------FGFKR----------LWRTFKEIRKLR--- 281 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHH--------------HHHHH----------HHHHHHHHHhCh---
Confidence 777777665 456677788876310 0000000000 00000 011223332222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcch--HHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRK--TLNMLSAFLS 430 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~ 430 (567)
-+..+++..+...-+.+.+......|..+..+. .+.....+...+.+++|+++.+++.||+|.| +.+..+.++.
T Consensus 282 --~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 282 --QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 222333333333446677777888887755544 3444566677888999999999999999999 6666655554
Q ss_pred HHHHHHHHH--HHHh--hhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 431 SGVMIVLAA--CFYW--NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKI 506 (567)
Q Consensus 431 ~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 506 (567)
.+..+.-.+ .... ..+.+...+..++.|.+.+. ..+..-++.+++.|+++.+.-+|+..+.+...+++||.++|.
T Consensus 360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~ 438 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL 438 (477)
T ss_pred HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222111 0000 12455666666667766664 556667999999999999999999999999999999999999
Q ss_pred HHHhhc-cchhhhHHHHHHHHHHHHH
Q psy3209 507 VQINFG-LYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 507 l~~~~g-~~~~~~~~~~~~~~~~~~~ 531 (567)
+.+..| .+..+....++.+++.++.
T Consensus 439 i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 439 ITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 999987 5567777777777766654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-16 Score=153.87 Aligned_cols=325 Identities=17% Similarity=0.152 Sum_probs=226.2
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc----cch-hHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDK----FGR-KNTLLLTSLVFLTSSLLTIFAQS------SYWLFTSRLLS 220 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~ 220 (567)
+|+++..+|.+..+.-+--++.-|+.|.+.|| +|| |+.++.+.+-+++.+.++-.+++ ....++.-.+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 89999999999999999999999999999994 786 46667788889999988888773 44556678888
Q ss_pred hccccccccchhhhhhcccC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHHH-H
Q psy3209 221 GIGKGVGFTVVPMYIAEITD-KEIRGTLSTMFTGHLYGGILFSLCVGPYI-----------QYQTLNIILGVIPLVFF-I 287 (567)
Q Consensus 221 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~-~ 287 (567)
+++.......-.++.+|+.+ ++||.+..++-+.+..+|.++...+...+ ||+....+.++++++.+ +
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99988888888888999875 58999999999988888866554443222 68888888777777644 4
Q ss_pred HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHH
Q psy3209 288 TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQ 367 (567)
Q Consensus 288 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
+++-++|.+... ... +...+.+.+..+..+++|+.++...+..++
T Consensus 203 ~~~~v~ER~~~~----~~~--------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~----- 247 (467)
T COG2211 203 CFFNVKERVVET----QPT--------------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLL----- 247 (467)
T ss_pred HHHHhhcccCcc----ccC--------------------------cccccccHHHHHHHHHccchHHHHHHHHHH-----
Confidence 444466653100 000 000111112234456777655544332222
Q ss_pred HhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3209 368 RLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF 445 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (567)
.+.+.+........|.+...+. ..............+++.++..++.+|+|+|+++..+.++..++.+++.+.. ..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--~~ 325 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--AG 325 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--Cc
Confidence 2223344444444444444333 2333455555566667789999999999999999999888888888776633 23
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhcccCCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy3209 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFP-------TNVKSSAASIASIAFALASFLINKFYKIVQINFGLY 514 (567)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~ 514 (567)
+.+..++..++.+.+.+. ..+++|++++|... .+..|...|...+++-+|.+++..+.|+..+..|+.
T Consensus 326 ~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 326 SVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred chHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555666666665 56777899998864 345688899999999999999999999999887753
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=157.61 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=184.5
Q ss_pred HHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---------------
Q psy3209 205 IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--------------- 269 (567)
Q Consensus 205 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------- 269 (567)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|.+++|++++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999988742
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhhc--ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccc
Q psy3209 270 -----QYQTLNIILGVIPLVFFITFMF--IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS 342 (567)
Q Consensus 270 -----~wr~~f~~~~~~~~~~~~~~~~--lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (567)
+|+++|++.+.+.++..+.+.+ +||... +++ ++. .. ++..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~-~~~-------------------------~~--~~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADV-ARV-------------------------SS--GDTT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccc-ccc-------------------------cc--cccc
Confidence 5889988776665554444333 355310 000 000 00 0000
Q ss_pred cHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhc---cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhc
Q psy3209 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH---HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAG 418 (567)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 418 (567)
..++.+++|. +....+..+........+..|.+.|+.+. +.. ...+.....+..+.++|+++++++.||++
T Consensus 132 ~~~~~~~~~~-----~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g 206 (310)
T TIGR01272 132 QKTSAFQFTH-----LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMIS 206 (310)
T ss_pred chhhHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1112333322 22233444444445677888999999754 222 44566777888899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHH
Q psy3209 419 RKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASF 498 (567)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 498 (567)
+++.+.++..+..++.+++.. . + . .......++++++.+.. .|...+...+.+|+ +.+++.++. ....+|++
T Consensus 207 ~~~~l~~~~~l~~~~~~l~~~-~--~-~-~~~~~~~~l~g~~~s~i-~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 207 QGRYLAFNAFLAVLLSIGAAL-T--H-G-YVAMWFVLALGLFNSIM-FPTIFSLALNALGR-HTSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-c--C-C-HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcch
Confidence 999887777666655533322 1 1 1 22233444566666654 44445778887774 466777775 57789999
Q ss_pred HHHHHHHHHHHhhccchhhhH
Q psy3209 499 LINKFYKIVQINFGLYYMFAF 519 (567)
Q Consensus 499 i~~~i~g~l~~~~g~~~~~~~ 519 (567)
++|.+.|.+.|..|...++++
T Consensus 279 i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 279 IVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHHHHHHHHhccchHHHHH
Confidence 999999999999888776653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=159.33 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=209.6
Q ss_pred HHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHH
Q psy3209 117 IAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLV 196 (567)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 196 (567)
..+++.++..+..++..+++...+..+.+. |+++..+.|++.+.+=++..+...+..+..-|.-|-+.+-+|+++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErR-----F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~ 171 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERR-----FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVL 171 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-----cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhH
Confidence 345556677788888888888999988888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--------------------h--------------------------------hHHHHHHHHHHHhccc
Q psy3209 197 FLTSSLLTIFA--------------------Q--------------------------------SSYWLFTSRLLSGIGK 224 (567)
Q Consensus 197 ~~i~~~~~~~~--------------------~--------------------------------~~~~l~~~R~l~G~~~ 224 (567)
++++++++++- + -+..++++.++.|+|.
T Consensus 172 m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~ 251 (735)
T KOG3626|consen 172 MGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA 251 (735)
T ss_pred HHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence 99999999871 0 0225677799999999
Q ss_pred cccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHHHHH
Q psy3209 225 GVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----------------------QYQTLNIILGVI 281 (567)
Q Consensus 225 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----------------------~wr~~f~~~~~~ 281 (567)
...++.+.+|+-|...+++-...+|+......+|+++|.+++++. .|..-|++.+.+
T Consensus 252 Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 252 TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 266677777777
Q ss_pred HHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCc--chHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHH
Q psy3209 282 PLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQ--NITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALII 359 (567)
Q Consensus 282 ~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (567)
.++..+.++++|.... +.+++.+++ ..+..+.++. +..... .+.-+.-...++++++|| +++
T Consensus 332 ~~~~a~p~f~fPk~lp----~~~~~~~~~-~~~~~k~~~~~~~~~~~~------~~~ikdfp~s~~~ll~N~-----if~ 395 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKELP----KSQKRKRAR-DLHVLKTESGGAKSDKTF------GKKIKDFPKSIKRLLSNP-----IFM 395 (735)
T ss_pred HHHHHHHHHhCcccCc----cccccchhh-hhcccccccccccCCcch------hhhHHHHHHHHHHHhcCc-----hHH
Confidence 7776777777776531 111111100 0000000000 000000 000112234566777776 455
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhhhhccCCc--hhHHHH-HHHHHHHHHHHhhHHHHHhhhcc--hHHHHHHHHHHHHHH
Q psy3209 360 VLVTSFLQRLSGVSTILSYASTTLPEHHGLI--GRTECL-IIFSVLLVVTNFACSPLVDIAGR--KTLNMLSAFLSSGVM 434 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~ 434 (567)
...+........+.++.+|+|.|++.+.+.. .+.... .+...+..+|.+++|+++.|+.. |....+..+...+.+
T Consensus 396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 5556666666678899999999999887652 222222 23334456788889999998743 444444444333333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=143.74 Aligned_cols=335 Identities=16% Similarity=0.109 Sum_probs=220.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhH-HHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHhccccccccch
Q psy3209 156 AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKN-TLLLTSLVFLTSSLLTIFAQS--S-YWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 156 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~--~-~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+..+...++..+..++-+++.|.++|+.|+|| .+-+...+..+..++..++++ + +..+++-.+..++.....+.-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 456688888999999999999999999999655 555566666666777777765 4 445556788888888888888
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh----------------------hhhHHHHHHHHHHHHH-HHHH
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY----------------------IQYQTLNIILGVIPLV-FFIT 288 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----------------------l~wr~~f~~~~~~~~~-~~~~ 288 (567)
.+++.+..++++-++..++-.....+|.++.-++... ..-|..+.+.++.-++ .+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 8999999999888888777665555555444333211 0357777777776666 4455
Q ss_pred hhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHH
Q psy3209 289 FMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQR 368 (567)
Q Consensus 289 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (567)
++.+|+.++- +...... ..... ++...+++++.+.+ .+..+.+..+..
T Consensus 217 ~~~v~~~~~~----~~~~~~~-------------l~~g~----------k~L~~t~k~i~~~~-----~i~~FLiA~~~~ 264 (438)
T COG2270 217 ILNVHDAEKI----SSPPPTA-------------LRNGF----------KELKSTFKEIRGRK-----NLVLFLIARFFY 264 (438)
T ss_pred Hhcccccccc----cccchHH-------------HHHHH----------HHHHHHHHHHhccc-----chHHHHHHHHHH
Confidence 6666665420 0000000 00111 11122344444433 222233333333
Q ss_pred hhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 369 LSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
.-+.+.++.....+-....+. .+.........+..++|+++.|++.||+|.|+++..+.++..+..+..... ..
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~----~~ 340 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL----EG 340 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc----cc
Confidence 345677777777776644443 344566667788899999999999999999998888877776665554441 12
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhhHHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY-YMFAFYAICSG 525 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~-~~~~~~~~~~~ 525 (567)
....+++..+++...+. ..+..-++..+++|+++.+..+|+++..+....+.+|.+++.+.+..|.. ..+....++..
T Consensus 341 ~~~f~i~gll~g~s~G~-~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~ 419 (438)
T COG2270 341 ELDFWILGLLVGTSLGG-AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL 419 (438)
T ss_pred cHHHHHHHHHHHHhcch-HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33334444555555543 45555689999999999999999999999999999999999998887753 23333333333
Q ss_pred HH
Q psy3209 526 IN 527 (567)
Q Consensus 526 ~~ 527 (567)
++
T Consensus 420 iG 421 (438)
T COG2270 420 IG 421 (438)
T ss_pred hh
Confidence 33
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-18 Score=178.06 Aligned_cols=374 Identities=13% Similarity=0.101 Sum_probs=3.0
Q ss_pred HhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q psy3209 121 SASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS 200 (567)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 200 (567)
..++..+...+..++...++..+.+. |+++..+.|++.+.+-++..+..++..++.+|..|-+.+-+|.+++++|
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErR-----F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g 81 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERR-----FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG 81 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence 33444555577888888889999888 9999999999999999999999999999999987888999999999999
Q ss_pred HHHHHHHh--------------------------------------------------hHHHHHHHHHHHhccccccccc
Q psy3209 201 SLLTIFAQ--------------------------------------------------SSYWLFTSRLLSGIGKGVGFTV 230 (567)
Q Consensus 201 ~~~~~~~~--------------------------------------------------~~~~l~~~R~l~G~~~g~~~~~ 230 (567)
++++++-+ -+..++++.++.|+|.+..++.
T Consensus 82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL 161 (539)
T PF03137_consen 82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL 161 (539)
T ss_dssp ----------------------------------------------------------------------SSS-------
T ss_pred HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence 99887600 0457888899999999999999
Q ss_pred hhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHHHHHHHH
Q psy3209 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--------------------------QYQTLNIILGVIPLV 284 (567)
Q Consensus 231 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------------------~wr~~f~~~~~~~~~ 284 (567)
+.+|+-|..++++-+.+.|++.+...+|+++|.++++.+ .|..-|++.+++.++
T Consensus 162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888764 144445555555555
Q ss_pred HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHH---HHhhhhhcccccHHHHhcchhhhHHHHHHH
Q psy3209 285 FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV---LTTNENMKNKSGYRELVSNYSYRKALIIVL 361 (567)
Q Consensus 285 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (567)
..+.+++.|+.. .+.++.+..+..++.+.++. ..++..+.. .....-+.-....+++++|| .++..
T Consensus 242 ~aipl~~FPk~l-----p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np-----~f~~~ 310 (539)
T PF03137_consen 242 SAIPLFFFPKKL-----PGTSERQEEKESSERKEEDS-DKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP-----VFMCL 310 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCccC-----CCcccccchhhhhhcchhhh-hhhcccccccccchhhhhhhHHHHHHHHhcCh-----HHHHH
Confidence 445555556541 11100000000000000000 000000000 00011122234456666665 44455
Q ss_pred HHHHHHHhhhHHHHHHhhhhhhhhccCCc--hhH-HHHHHHHHHHHHHHhhHHHHHhhhcc--hHHHHHHHHHHHHHHHH
Q psy3209 362 VTSFLQRLSGVSTILSYASTTLPEHHGLI--GRT-ECLIIFSVLLVVTNFACSPLVDIAGR--KTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~ 436 (567)
.+..........++.+|.|.|++.+.+.. .+. ........+.++|.+++|++..|++- |..+....+...++.+.
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 55555555567788999999999877642 222 22223334567899999999999743 44443333333333222
Q ss_pred HHHH---------------HH-------h--h-----------------h-----h----hHHHHHHHHHHHHHhhcccc
Q psy3209 437 LAAC---------------FY-------W--N-----------------F-----D----YWVSYLFTSLFGITYSLGIG 466 (567)
Q Consensus 437 ~~~~---------------~~-------~--~-----------------~-----~----~~~~~~~~~~~~~~~~~~~~ 466 (567)
+... .+ . + . . ....++.+++..+..++...
T Consensus 391 ~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~ 470 (539)
T PF03137_consen 391 YSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV 470 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc
Confidence 1000 00 0 0 0 0 11122222233333344445
Q ss_pred chhhhhcccCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy3209 467 IIPTTLLSELFPTNVKSSAASIASIAF-ALASFLINKFYKIVQINF 511 (567)
Q Consensus 467 ~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~i~g~l~~~~ 511 (567)
|.. ......+|++.|+.+.|+..++. -+|.+-+|.++|.+.|..
T Consensus 471 p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 471 PST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ----------------------------------------------
T ss_pred chh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 554 66778899999999999997664 566688999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=153.71 Aligned_cols=380 Identities=18% Similarity=0.215 Sum_probs=220.6
Q ss_pred HHHhhhhHHHhhhhccchhhh-hhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccch-hHHHHHHHHH
Q psy3209 119 AFSASLPIFIVGCWLTWPSVA-LYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGR-KNTLLLTSLV 196 (567)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~ 196 (567)
+.+..+..++.+...+++.+. -|.+++ -|.+.+.+..|++.++..+|.+++++..|+.+.|.|. |+.++.|.++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~----lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQK----LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhh----cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 334445566666666666554 343333 1257778889999999999999999999999999996 8889999999
Q ss_pred HHHHHHHH-HHH---h-hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q psy3209 197 FLTSSLLT-IFA---Q-SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269 (567)
Q Consensus 197 ~~i~~~~~-~~~---~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-- 269 (567)
..+|+++. ++. + ..+.++++|++.|+|.|. ....-+|+++....++|.++++..+.+..+|.++||.++..+
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 99999888 332 3 578899999999999774 477789999988889999999999999999999998888776
Q ss_pred ----h-----------hHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy3209 270 ----Q-----------YQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLT 333 (567)
Q Consensus 270 ----~-----------wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (567)
| +-.+-|+.+++.++ .+++.+++.|.++.- .+++.++ + ++
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~-----~~~~~~~------------~---~~---- 246 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI-----IDKKKRS------------V---EE---- 246 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc-----ccccccc------------c---hh----
Confidence 2 23455666777666 455556677764311 0000000 0 00
Q ss_pred hhhhhcccccHHHHhcchhh-hHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--c-hhH---HHHHHHHHHHHHH
Q psy3209 334 TNENMKNKSGYRELVSNYSY-RKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--I-GRT---ECLIIFSVLLVVT 406 (567)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~~~ 406 (567)
...-.+-.+.++. +...+.++.+.+...+. ........+.......+. . ... ......++..+..
T Consensus 247 -------~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~-~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~ 318 (488)
T KOG2325|consen 247 -------EKSDIEKVKKPKLDWVAVLVCIFLRFVVNFI-ATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVIL 318 (488)
T ss_pred -------hccchhhhccCChhHHHHHHHHHHHHHHHHH-HHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHH
Confidence 0000001111111 22222233333333222 222222222222222222 1 111 2222222222222
Q ss_pred HhhHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHH--HHhhh---------------h---------hHHHHHH--HHHH
Q psy3209 407 NFACSPLV-DIAGRKTLNMLSAFLSSGVMIVLAAC--FYWNF---------------D---------YWVSYLF--TSLF 457 (567)
Q Consensus 407 ~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------------~---------~~~~~~~--~~~~ 457 (567)
.+..+... -++.+|..+..++.....+..+.... ....+ . ....++. ..++
T Consensus 319 ~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~ 398 (488)
T KOG2325|consen 319 LLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVF 398 (488)
T ss_pred HHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhhee
Confidence 22222222 23344454554433333333322211 11000 0 0111111 1222
Q ss_pred HHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
|.++-....+. .+.-+++..++.+++..|+......++..++|.+........|.+..+.+.++..++...+...+.+
T Consensus 399 g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 399 GIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred ccccccccchH-HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222233 3778899999999999999999999999999999999999999887666666555555444444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-14 Score=136.94 Aligned_cols=382 Identities=13% Similarity=0.092 Sum_probs=227.6
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhccccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-GRKNTLLLTSLVFLTSSLLTIFAQ--SSYWLFTSRLLSGIGKGVGF 228 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~ 228 (567)
+|.++++..-+.++|..-.-+.++++|+++||+ |+|+++++|.+++.+|.++.+.+. +...++++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 679999998889988888888999999999996 999999999999999999999984 78899999999999999999
Q ss_pred cchhhhhhcccCCC--cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccC----Cc--
Q psy3209 229 TVVPMYIAEITDKE--IRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPE----TP-- 296 (567)
Q Consensus 229 ~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpe----sp-- 296 (567)
+....++.|.+|++ +|-..++++.++.++|.+++|++.+++ ||...|-..++-....++.++..+. ++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 99999999999864 467788888889999999999888887 7999998877765554444433321 11
Q ss_pred ---hhHHhhcCcHHHHHHHHHHhcCCC---cchHHHHHHHHHHhhhhhcccccHHHHhcch---hhhHHHHHHHHHHH--
Q psy3209 297 ---YFHIIKDNNQVAAKKSLEWFKGKS---QNITEELDEIVLTTNENMKNKSGYRELVSNY---SYRKALIIVLVTSF-- 365 (567)
Q Consensus 297 ---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 365 (567)
.-+ ..+.............-... ....+..........- .....-+.+.++.+ .-+++++..+-+..
T Consensus 216 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~ 293 (498)
T COG3104 216 PDPNPL-SFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI-LIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFA 293 (498)
T ss_pred CCccch-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 000 00000000000000000000 0000000000000000 00000001111111 11222222111111
Q ss_pred ----HHHhhhHHHHHHhhhhhhhhc-c-CCchhHHHHHHHHHHHHHHHhhHHHHHhhhcch-------HHHHHHHHHHHH
Q psy3209 366 ----LQRLSGVSTILSYASTTLPEH-H-GLIGRTECLIIFSVLLVVTNFACSPLVDIAGRK-------TLNMLSAFLSSG 432 (567)
Q Consensus 366 ----~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-------~~~~~~~~~~~~ 432 (567)
...--....+..|........ . ......+......+.-++.+++..++..|.+++ .-+-++..+++.
T Consensus 294 ~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~ 373 (498)
T COG3104 294 VIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGL 373 (498)
T ss_pred HHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHH
Confidence 111111222333333332222 1 114455666677777777777777777774433 223455666666
Q ss_pred HHHHHHHHHH-hh-----hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 433 VMIVLAACFY-WN-----FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKI 506 (567)
Q Consensus 433 ~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 506 (567)
+.+++..... .. .+.++.+...++..++ -....|+..+++....|+...+..+|+.......+..++..+.+.
T Consensus 374 ~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 374 GFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 6666555411 11 1334444444444444 445778878999999999999999999888888888877777662
Q ss_pred ------HHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 507 ------VQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 507 ------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
..+.......|+.++....+..+......|
T Consensus 453 ~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 453 TAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 334444556677777776666655544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=155.61 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=131.5
Q ss_pred hhhhhhh-hcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HHHHhhHHHH
Q psy3209 138 VALYKWQ-TKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL---TIFAQSSYWL 213 (567)
Q Consensus 138 ~~l~~i~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~l 213 (567)
..+|.+. ++ +|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ...+++...+
T Consensus 271 ~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 271 TYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3455544 44 7888888888888889999999999999999999999988887655444332 2233457778
Q ss_pred HHHHHHHhccccccccchhhhhhcccCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHH
Q psy3209 214 FTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTM-FTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFI 287 (567)
Q Consensus 214 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~ 287 (567)
+++|++.|++.+........++.|++|++.|++++++ ++.+... ..++|.+.+++ +|+..+++..+++++.++
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~ 424 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI 424 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 8899999988777667777888999999999999997 4554444 45566555554 477777776766666666
Q ss_pred HhhcccCCchhHHhhc-----CcHHHHHHHHHHhcC
Q psy3209 288 TFMFIPETPYFHIIKD-----NNQVAAKKSLEWFKG 318 (567)
Q Consensus 288 ~~~~lpesp~~~~~~~-----~~~~~~~~~~~~~~~ 318 (567)
..+++||+|+|+ .++ ++.+|+++.+++++.
T Consensus 425 ~~~~~pes~~~~-~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 425 TGVTMKETANRP-LKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHHHhccccCCC-CCCccccccchhhHHHHhhcccc
Confidence 666789999997 544 888999999988874
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=124.35 Aligned_cols=322 Identities=15% Similarity=0.058 Sum_probs=211.1
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc-----hhHHHHH-HHHHHHHHHHHHHHH-----h--------h-HH
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG-----RKNTLLL-TSLVFLTSSLLTIFA-----Q--------S-SY 211 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~--------~-~~ 211 (567)
++++....+.+.+...+... ..+.+|+.||+.+ ||..+++ |..+...+..+..++ . . .+
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 88898888988888877665 5888999999999 8765554 666666666665553 1 1 12
Q ss_pred --HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHH--HHHH
Q psy3209 212 --WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIIL--GVIP 282 (567)
Q Consensus 212 --~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~--~~~~ 282 (567)
...+.-.+.|+|.+...+...++++|..|+++|+++.++...+..+|.+++.++.+.+ .-|..-.+. +++.
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 3444567889999988899999999999999999999999999999999998887765 223332222 2223
Q ss_pred HHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHH
Q psy3209 283 LVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLV 362 (567)
Q Consensus 283 ~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (567)
+++.++..+=.|..... .. . ...+++......++++..+|+.++....++.
T Consensus 169 ~~l~~ia~wg~E~r~~~----~~-----------~--------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l 219 (403)
T PF03209_consen 169 LLLNLIALWGQEPRRSR----RA-----------A--------------AAERPRPPFREAWRQVWASPQARRFFVFLFL 219 (403)
T ss_pred HHHHHHHHHhcccCCcc----cc-----------c--------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence 33222222323321100 00 0 0001111223345666666665554433332
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHh-hhcchHHHHHHHHHHHHHHHHHHH
Q psy3209 363 TSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVD-IAGRKTLNMLSAFLSSGVMIVLAA 439 (567)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~ 439 (567)
.... ++..-..+-+|-.+..+. .+........+.+.+++-.+.|++.. |.++++....++....+++.++..
T Consensus 220 ~t~a-----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 220 GTLA-----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHH-----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 2221 122222222232333322 34456677777888888888888766 678888888888888877776665
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 440 CFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN 510 (567)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~ 510 (567)
.. ...+.+......+++|++.+....... +.+.++.++++.|..+|.....+.+...++..+.|.+.|.
T Consensus 295 a~-~~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 295 AG-PLGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HH-hcccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 234566777777888887776444443 6788888889999999999999999999999999888764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=129.21 Aligned_cols=355 Identities=18% Similarity=0.236 Sum_probs=214.5
Q ss_pred HHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCCh-hhHHHH----HHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 118 AAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDA-EKVSWV----VATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~-~~~~~~----~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
......+-.|..++.........+..... ++.+. ...+.. .....+...+.++..|.++||+|||..+.+
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct-----~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~ 97 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACT-----FGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLL 97 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcc-----cccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHH
Confidence 34444455566666665555555555444 32221 112222 223467788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--cccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-
Q psy3209 193 TSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGK--GVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI- 269 (567)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~--g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l- 269 (567)
.++...+..+...+.. +|.++ +.|+.. +.......++++|....++|....++....+..+..++|.+++.+
T Consensus 98 ~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 98 PLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred HHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999988888888776 33333 555543 344567788999999999999999999999999999999888876
Q ss_pred ---hhHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHH
Q psy3209 270 ---QYQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYR 345 (567)
Q Consensus 270 ---~wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (567)
|.-..|.+..+..++ .....+++||+- .+++.++ .............. .....+.
T Consensus 173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl-----~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~ 231 (463)
T KOG2816|consen 173 KFLGIALVFLIAAASGILSLLYMLLFLPESL-----QEKERSD--ATLRELTPGSLDSS--------------HVADAFQ 231 (463)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhcccccc-----Ccccccc--ccccccCCCcccch--------------hhhhhhh
Confidence 566777777777666 566777889983 2211111 00000000000000 0001111
Q ss_pred HHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHH-HHHhhhcchHH
Q psy3209 346 ELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACS-PLVDIAGRKTL 422 (567)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~ 422 (567)
...+ ....+..+.......+..........-..+.++....+. ...+...........++.++.. .+...++.|+.
T Consensus 232 ~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~ 310 (463)
T KOG2816|consen 232 SLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL 310 (463)
T ss_pred hhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1111 111111222222222111100000110223344433333 2333455555666777777665 77888898888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy3209 423 NMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINK 502 (567)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 502 (567)
+..|.....+....+++.. ..|..+....+..+. ....+...+..+...+++.+|.+.++...+..+.+.++|.
T Consensus 311 i~lGl~~~~~~~~~~af~~----~~w~~~~~~v~~~~~--~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~ 384 (463)
T KOG2816|consen 311 ISLGLLSEFLQLLLFAFAT----ETWMMFAAGVVVALA--GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPA 384 (463)
T ss_pred hhHHHHHHHHHHHHHHHhc----cchhhhHHHHHHHhh--cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHH
Confidence 8888888888777776622 344444333333222 2344555688888899999999999999999999999999
Q ss_pred HHHHHHHh
Q psy3209 503 FYKIVQIN 510 (567)
Q Consensus 503 i~g~l~~~ 510 (567)
+.+.+...
T Consensus 385 ~~~~i~~~ 392 (463)
T KOG2816|consen 385 LYGNIFAL 392 (463)
T ss_pred HHHHHHHH
Confidence 99988653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=146.11 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhccc
Q psy3209 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEIT 239 (567)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 239 (567)
.+...+..++..++.++.|+++||+|||+++++++++.+++.++.+++++...+++++++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455677899999999999999999999999999999999999999998888888999999988888899999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhcccCCc
Q psy3209 240 DKEIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGVIPLVFFITFMFIPETP 296 (567)
Q Consensus 240 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~lpesp 296 (567)
|.+.|++++|+.++...+|.+++|++++.+ +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998765 445677777777776666666779973
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=120.33 Aligned_cols=133 Identities=25% Similarity=0.427 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCC
Q psy3209 163 VATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKE 242 (567)
Q Consensus 163 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 242 (567)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHH-HHHhhcccCC
Q psy3209 243 IRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVF-FITFMFIPET 295 (567)
Q Consensus 243 ~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~-~~~~~~lpes 295 (567)
+|++..++.+....+|..+++.+.+.+ +|++.+++.+++.++. +..+++.||+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999888876 7999999888777664 3444445653
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=123.25 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=111.5
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh---hHH----
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ---SSY---- 211 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~---- 211 (567)
.-..+.++ -|++..+..+......+...+..+++..+.||+|||+.++++..+..+..+++...- +..
T Consensus 292 Yst~i~~~-----aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (485)
T KOG0569|consen 292 YSTSIFKT-----AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL 366 (485)
T ss_pred HHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33445555 799999999999999999999999999999999999999999999998888776542 111
Q ss_pred --HHHHHHHHHhc--cccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHH
Q psy3209 212 --WLFTSRLLSGI--GKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY----IQYQTLNIILGVIPL 283 (567)
Q Consensus 212 --~l~~~R~l~G~--~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~----l~wr~~f~~~~~~~~ 283 (567)
..+++.++..+ +.| .-|+..-+.+|.+|++.|..++++......++.++-...-.. +|- +.|+...++++
T Consensus 367 ~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~ 444 (485)
T KOG0569|consen 367 SYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLA 444 (485)
T ss_pred HHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 12334433333 333 247888899999999999999999887777666554433333 344 66677777766
Q ss_pred H-HHHHhhcccCC
Q psy3209 284 V-FFITFMFIPET 295 (567)
Q Consensus 284 ~-~~~~~~~lpes 295 (567)
+ .+..+..+|||
T Consensus 445 ~~~i~~~~~lPET 457 (485)
T KOG0569|consen 445 IFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHhCccc
Confidence 6 56777889998
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=127.43 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=127.7
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAA 439 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 439 (567)
.++..+..+.....+..+.|.+.++.+.+ .+.+.......++..++.++.|++.||+|+|+.+.++.++.+++.+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 33333333333345567788887776655 45567777888899999999999999999999999888888877766554
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhH
Q psy3209 440 CFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAF 519 (567)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~ 519 (567)
. .+.+..++..++.+++.+..+.+. ..++.+.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|.+
T Consensus 108 ~----~~~~~l~~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 108 S----SSLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred H----hHHHHHHHHHHHHHHHHHccchHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2 234444444455566665544444 48899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy3209 520 YAICSGINVLFTFFFIFE 537 (567)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~ 537 (567)
.+++.++..++..+..++
T Consensus 183 ~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 877766555544445554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-11 Score=110.27 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=147.9
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
+|.++.|++.+....+...++...+.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++.|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999886 4556899999999999999999988877
Q ss_pred hhhh-hccc----CCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----h--hHHHHHHHHHHHHHH-HHHhhcccCCchh
Q psy3209 232 PMYI-AEIT----DKEIRGTLSTMFT-GHLYGGILFSLCVGPYI----Q--YQTLNIILGVIPLVF-FITFMFIPETPYF 298 (567)
Q Consensus 232 ~~~i-~e~~----~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----~--wr~~f~~~~~~~~~~-~~~~~~lpesp~~ 298 (567)
-+++ .|.- |++..+...+... ...++-.+++++++..+ + -..+|....++.++. +++....+|.+..
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 7654 4442 2232333333333 22333345555555554 2 366777766666553 3344445665310
Q ss_pred HHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHh
Q psy3209 299 HIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSY 378 (567)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (567)
. .++.+ .....+..++.+.++| +++.+.....+...+.+..+..|
T Consensus 223 ~---~~~~~----------------------------~~~~~~~a~~~i~~d~----ril~LG~~qslFE~smy~FVflW 267 (354)
T PF05631_consen 223 T---SSSSS----------------------------LSGSFREAWRAILSDP----RILLLGLIQSLFEGSMYLFVFLW 267 (354)
T ss_pred c---ccccc----------------------------hHHHHHHHHHHHHcCc----hhHHHHHHHHHHHHHHHHheeee
Confidence 0 00000 0000011233444443 34444555555555555666667
Q ss_pred hhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy3209 379 ASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIA 417 (567)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 417 (567)
.|..- .......-+.++..+.++.++|+.+..++..+-
T Consensus 268 tPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 268 TPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred eceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77765 222224567888888888999998887655543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=122.24 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=149.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHH
Q psy3209 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLS 430 (567)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 430 (567)
+++...+...++.+...+..=..+..-.|.+.++.+.+ .+.+.....+.+..-++.++.|.++||.+.|..+.++.+++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 34444555555555554444455666677777766555 66778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q psy3209 431 SGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFY--KIVQ 508 (567)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~--g~l~ 508 (567)
++..+++++. .+.+...++..+-+.+.++++.|.. -.+..-+|+++||+..++.|+..++|+++.|.+. +.+.
T Consensus 105 ai~nil~Gfs----~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 105 AIVNILFGFS----PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 9999998883 2566677777788888888888876 7888999999999999999999999999999999 8888
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 509 INFGLYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
.+.+|+..|++-++++++..++.++..+++
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888999999999999888888877766554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=123.83 Aligned_cols=348 Identities=14% Similarity=0.122 Sum_probs=200.8
Q ss_pred hhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc-----hhHHHHHHHHHHHHHHHHHHHHh----
Q psy3209 138 VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG-----RKNTLLLTSLVFLTSSLLTIFAQ---- 208 (567)
Q Consensus 138 ~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~~---- 208 (567)
+..|.+.++ +|+++.+.+...+...+...+-. ++|.++|.+- ||+-++++.++..++.+..+..+
T Consensus 11 ~~~~~l~~~-----l~ls~~~~~~~~~~~~lPw~~Kp-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~ 84 (433)
T PF03092_consen 11 AIYPFLKDD-----LGLSPAQLQRLSSLASLPWSIKP-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES 84 (433)
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHHHHhCchHHhh-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence 446667777 99999999998888888777654 5789999763 56666667777766666565533
Q ss_pred hHHHHHHHHHHHhccccccccchhhhhhcccCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHH
Q psy3209 209 SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDK--EIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIP 282 (567)
Q Consensus 209 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~ 282 (567)
+.....++-++..+|.+....++-+++.|...+ +.||...+.......+|.+++..+++.+ ++++.|.+.+++.
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~ 164 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP 164 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence 466667777888899999999999999998743 3467777777788888888888777766 7888898888777
Q ss_pred HHHHHH-hhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHH
Q psy3209 283 LVFFIT-FMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVL 361 (567)
Q Consensus 283 ~~~~~~-~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (567)
++..+. .++.+|.++ +.+.+.. . ...+.. .... ...++....+++.++.+..+...+...
T Consensus 165 ~l~~~~~~~~~~e~~~-----~~~~~~~-~----~~~~~~--~~~~-------~~~~~~~~~l~~~~~~~~i~~~~~~~~ 225 (433)
T PF03092_consen 165 LLMLIVALFLLEERKV-----RPADEVF-S----FGKEEV--PCLF-------GSFREQLSELWRALQQRAIWQPILFFI 225 (433)
T ss_pred HHHHHHHHHhhhhccc-----cccchhh-c----cccccc--chhh-------HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 765444 444454211 0000000 0 000000 0000 001111234455555554554444111
Q ss_pred HHHHHHHhhhHHHHHHhhhhhhhhccCCchh---HHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 362 VTSFLQRLSGVSTILSYASTTLPEHHGLIGR---TECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
++..+... ...+..+|....... +...+. +....+..++.+++..+......+..-|+++....++..+..+.-.
T Consensus 226 ~~~~~~~~-~~~a~~fy~~~~~~~-gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~ 303 (433)
T PF03092_consen 226 FFFNLPPS-ISSASSFYFQTDALG-GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDL 303 (433)
T ss_pred HHHHhccC-CCCccEEEEEecccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccE
Confidence 11111000 000101111111000 111122 2233444455555655555555555666666655554443333211
Q ss_pred HH-HHhh-----hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3209 439 AC-FYWN-----FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG 512 (567)
Q Consensus 439 ~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g 512 (567)
.. ...+ ...+..+.-.++......+.+.|.. .+++|+.|+..-|+.+++...+.++|..++..+...+.+..|
T Consensus 304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 10 0000 0112222333444445555566775 789999999999999999999999999999999988887766
Q ss_pred c
Q psy3209 513 L 513 (567)
Q Consensus 513 ~ 513 (567)
.
T Consensus 383 v 383 (433)
T PF03092_consen 383 V 383 (433)
T ss_pred C
Confidence 3
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-12 Score=125.85 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=118.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
+|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+......+.++.+.+++.+++.+++.|...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888888888899999999999999998888777666665556667788888889999988888777777
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccC
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPE 294 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpe 294 (567)
..+..|.+|+ +|++++++++....+|..+++.+++.+ ||+..|++.+++.++.++..+++||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7888899875 599999999888888888888888775 8999999888887776666666665
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=125.31 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=120.7
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHH
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS--YWLFTS 216 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~ 216 (567)
..+...++ ++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++..+.+++.++..+.++. ..+++.
T Consensus 227 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (377)
T TIGR00890 227 LYKPYGQS-----LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLAT 301 (377)
T ss_pred HHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 34445566 88888899999999999999999999999999999999999999999998888777643 334566
Q ss_pred HHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy3209 217 RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV 284 (567)
Q Consensus 217 R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~ 284 (567)
.++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|++.+++.++
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 78889888888888888999999999999999999999999999999888765 899999888776655
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=131.01 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=122.1
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+.+..+.+++.++..++..++.+++|+++||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999988877788
Q ss_pred hhhhhcccCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHH-HHHhhcccCCc
Q psy3209 232 PMYIAEITDKEIRGTLSTM-FTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVF-FITFMFIPETP 296 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~-~~~~~~lpesp 296 (567)
..++.|.+|++.|+...+. ++....+|.++++.+.+.+ ||+..|++.+++.++. ++.++++++.|
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8899999999998877655 5667778888888877776 8999999988877664 34444454443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-12 Score=123.28 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=139.5
Q ss_pred HhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhH-HHHHHHHHHHHHHHHHHH
Q psy3209 128 IVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKN-TLLLTSLVFLTSSLLTIF 206 (567)
Q Consensus 128 ~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~ 206 (567)
.............|.+.++ .+|.++.+.++..+...++..++.++.+++.||+|||+ .+.++..+..++.++..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQE----VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHhHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556666655 13889999999999999999999999999999999999 999999999999999999
Q ss_pred HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHH
Q psy3209 207 AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIP 282 (567)
Q Consensus 207 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~ 282 (567)
.++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+ +|++.+++.+++.
T Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~ 341 (352)
T cd06174 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341 (352)
T ss_pred hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876 7999999998888
Q ss_pred HHHHHHhhc
Q psy3209 283 LVFFITFMF 291 (567)
Q Consensus 283 ~~~~~~~~~ 291 (567)
++..+..++
T Consensus 342 ~i~~i~~~~ 350 (352)
T cd06174 342 LLAALLLLL 350 (352)
T ss_pred HHHHHHhee
Confidence 776555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=120.49 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=120.1
Q ss_pred hhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 369 LSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
..+......+++.++++..+ + .+.+.......+..+++.++.|+++||+|||+.+..+.++..++.+++.+. ++
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~----~~ 95 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV----NN 95 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----hH
Confidence 34556667788888866533 3 456677777778889999999999999999999988887777766655442 23
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGI 526 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~ 526 (567)
.+..++..++.+.+.+. ..+...++..|.+|+++|+++.|+.+...++|.+++|.+.+.+.+ .||+.+|.+.+++.++
T Consensus 96 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 96 VTLVVLFFALINCAYSV-FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence 33333333444444433 344455888999999999999999999999999999999998875 6898899888877777
Q ss_pred HHHHHHHhccCC
Q psy3209 527 NVLFTFFFIFET 538 (567)
Q Consensus 527 ~~~~~~~~~~~~ 538 (567)
+.++..+..++.
T Consensus 174 ~~i~~~~~~~~~ 185 (395)
T PRK10054 174 PLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHhcc
Confidence 655554545443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-11 Score=120.84 Aligned_cols=178 Identities=17% Similarity=0.060 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHH
Q psy3209 357 LIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 435 (567)
.+...++.++........+....|.+.++.+.+ .+.+.....+.++..++.+..|++.||+|||+.+..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 444444444444444444555556444444433 4556777788888999999999999999999999988888888777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy3209 436 VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI------ 509 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------ 509 (567)
+..+. .+.+..++.-++.|++.+.. .+....++.|.+|+++|+.+.|+.+....+|..+++.+.+.+.+
T Consensus 89 ~~~~~----~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 89 ATMFA----TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHh----cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 76552 24455555566667766653 34445788999999999999999999999999999999988874
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 510 NFGLYYMFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 510 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
..||+++|.+.++..++..++.+++.+|+.
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 358999999988877776666666667654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=124.18 Aligned_cols=162 Identities=16% Similarity=0.104 Sum_probs=122.7
Q ss_pred HHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy3209 372 VSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVS 450 (567)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (567)
......+.|.+.++.+.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++..++.+++.. ..+.+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 108 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL----ATNVTQL 108 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----ccchHHH
Confidence 344555667666665544 44566677777888999999999999999999999888877777666554 2244445
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 530 (567)
++..++.+++.+... +...++..|.+|++.|+.+.++.+....+|..+++.+.+.+.+..||+..+++.+++.++..++
T Consensus 109 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 109 LILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 555556666655433 4445899999999999999999999999999999999999999999998888887666666666
Q ss_pred HHHhccCC
Q psy3209 531 TFFFIFET 538 (567)
Q Consensus 531 ~~~~~~~~ 538 (567)
...+.++.
T Consensus 188 ~~~~~~~~ 195 (398)
T TIGR00895 188 LMRFLPES 195 (398)
T ss_pred HHHhCCCC
Confidence 55666654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=123.77 Aligned_cols=137 Identities=12% Similarity=0.173 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhc
Q psy3209 158 KVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAE 237 (567)
Q Consensus 158 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e 237 (567)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.++.++.+.+++.+++.|++.+..++.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999998888888888888899999999999888887788889
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccC
Q psy3209 238 ITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPE 294 (567)
Q Consensus 238 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpe 294 (567)
.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+++.++.++..+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888888777776665 7999999888877775544444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=112.27 Aligned_cols=355 Identities=13% Similarity=0.095 Sum_probs=213.8
Q ss_pred hhhhhhhhhcccCCCccCChhhHH-HHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy3209 137 SVALYKWQTKEYVLPFELDAEKVS-WVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFT 215 (567)
Q Consensus 137 ~~~l~~i~~~~~~~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 215 (567)
-|.-|.+.+-....+.|++..|+. -+.-...-++....++...+.|..|.|++++++.+...+..++..+.++...+-+
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~ 99 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQL 99 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 445554443311223688888775 4556666778888899999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHh
Q psy3209 216 SRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI------QYQTLNIILGVIPLVFFITF 289 (567)
Q Consensus 216 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~ 289 (567)
..++-|++.+. ..+-.+|+--..++++-.++.+...++..+|-.++.++|..+ +.+..+++......+.++..
T Consensus 100 ~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~ 178 (412)
T PF01770_consen 100 MQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA 178 (412)
T ss_pred HHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 577778888888888889999999999999999998888876 45666666555444555566
Q ss_pred hcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHH-HHHHHhh-hh-------hcccccHHHHhcchhhhHHHHHH
Q psy3209 290 MFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELD-EIVLTTN-EN-------MKNKSGYRELVSNYSYRKALIIV 360 (567)
Q Consensus 290 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~ 360 (567)
+++|..++-....++..++.. ......++.+...+.. +...... .+ ......+++..++|.. +.
T Consensus 179 ~fLP~~~~S~~f~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~l-----l~ 251 (412)
T PF01770_consen 179 LFLPMPKRSLFFHRKPPAEQD--ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRL-----LL 251 (412)
T ss_pred HHcCCCCcccceeccCccccc--cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchH-----HH
Confidence 677765532211111111000 0000000000000000 0000000 00 0111233444444433 33
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC----chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL----IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
..++.....++++-+..|......+.... .-.+..-....+.+.++.+..|++..+..+...+..+......+.++
T Consensus 252 WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L 331 (412)
T PF01770_consen 252 WSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLL 331 (412)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 44444444455666667776666655111 22345555566667778888888855555544333333322222222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy3209 437 LAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINK 502 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 502 (567)
+.. ....+.|...+..+++...+.+.+.... .-++.....+.-|...|+++++..+-..+...
T Consensus 332 ~lm--~~t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~ 394 (412)
T PF01770_consen 332 FLM--SFTGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGINTFVALVLQTILTL 394 (412)
T ss_pred HHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeeeHHHHHHHHHHheEE
Confidence 222 2245777888888888887776555554 34444445677788888888776665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-12 Score=125.67 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=119.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhccccccccch
Q psy3209 156 AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ----SSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 156 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
....+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999998877776632 34667788999999999888888
Q ss_pred hhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----------hhHHHHHHHHHHHHH-HHHHhhcccCC
Q psy3209 232 PMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPYI----------QYQTLNIILGVIPLV-FFITFMFIPET 295 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----------~wr~~f~~~~~~~~~-~~~~~~~lpes 295 (567)
..++.|++|+++|++++++.+ ....+|.++||++++.+ ||+..|++.+++.++ .++.++++||+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999997 67788999998888765 389999988888776 45555667776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=120.63 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=124.8
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
+........|.+.++.+.+ .+.+.......++..++.++.|++.||+|||+.+..+.++..++.+.+... .+.+.
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~ 95 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----NNIET 95 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----ccHHH
Confidence 3344444556666665544 456677778888899999999999999999999998888877777665542 24444
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
.++..++.+++.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.+++.++..+
T Consensus 96 ~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 96 LLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 5555556665555433 344588999999999999999999999999999999999999989999888888887777766
Q ss_pred HHHHhccCCCC
Q psy3209 530 FTFFFIFETKG 540 (567)
Q Consensus 530 ~~~~~~~~~~~ 540 (567)
+.++..+|+++
T Consensus 175 ~~~~~~~~~~~ 185 (385)
T TIGR00710 175 LIFFILPETLP 185 (385)
T ss_pred HHHHhCCCCCC
Confidence 66556665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=118.31 Aligned_cols=159 Identities=15% Similarity=0.092 Sum_probs=120.8
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
.....|.+.++.+.+ .+.+.......++..++.+..|++.||+|||+++..+..+..++.+.... ..+.+..++.
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 103 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL----AWNFTVLLIS 103 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH----hccHHHHHHH
Confidence 334466666665544 45566666777788889999999999999999999998888877766554 2245555555
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
.++.+.+.+. ..+...++..+.+|+++|+.++|+......+|..++|.+.+.+.+..||++.|++.++++++..++.+.
T Consensus 104 r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 104 RIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 334445788999999999999999999999999999999999999999999999998887777666555
Q ss_pred hccCC
Q psy3209 534 FIFET 538 (567)
Q Consensus 534 ~~~~~ 538 (567)
..|+.
T Consensus 183 ~~~~~ 187 (390)
T PRK03545 183 LLPLL 187 (390)
T ss_pred hCCCC
Confidence 55543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=122.37 Aligned_cols=160 Identities=17% Similarity=0.084 Sum_probs=123.9
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
+....|.+.++.+.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++..++..++... .+.+..++.
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 88 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----GAYVSLYIL 88 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----cCHHHHHHH
Confidence 344445544444443 455677888889999999999999999999999988888777777666552 255566666
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
.++.+++.+.. .+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..+|++.|++.+++.++..++.++
T Consensus 89 ~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 89 RVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 67777776654 44445899999999999999999999999999999999999999999999998888877776666555
Q ss_pred hccCCC
Q psy3209 534 FIFETK 539 (567)
Q Consensus 534 ~~~~~~ 539 (567)
..++++
T Consensus 168 ~~~~~~ 173 (399)
T TIGR00893 168 FIPDPP 173 (399)
T ss_pred eecCCC
Confidence 555543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=122.75 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=125.0
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRL 218 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 218 (567)
.+|.+.++ .|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-+
T Consensus 242 ~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK11551 242 WLPSLLVG-----QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316 (406)
T ss_pred HHHHHHHh-----CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45666677 8999999999999999999999999999999999999998887777777777777888888888888
Q ss_pred HHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhcc
Q psy3209 219 LSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFITFMFI 292 (567)
Q Consensus 219 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~l 292 (567)
+.|++.++..+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++..+...++..+..+++
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999988878888889999999999999999999999999999999998886 46666666655555544444444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=119.03 Aligned_cols=175 Identities=13% Similarity=0.107 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 360 VLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
...........+........|.+..+.+.+ ...+.......++..++.++.|+++||+|||+.+..+.++..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 333444444445556667788777776554 3445666777788889999999999999999999988887777766655
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q psy3209 439 ACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFA 518 (567)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~ 518 (567)
.. .+.+..++..++.+.+.+.. .+..++++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..++
T Consensus 87 ~~----~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 87 LA----ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred Hh----CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 41 23334444445555554432 33445888999999999999999999999999999999988888889988888
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q psy3209 519 FYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~ 539 (567)
+.+++.++..++.+...+|++
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 888887777776666666654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=116.52 Aligned_cols=160 Identities=10% Similarity=0.077 Sum_probs=122.2
Q ss_pred HHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy3209 374 TILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYL 452 (567)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (567)
......|.+.++.+.. .+.+.......++..+++++.|++.||+|||+.+..+.++..++.++... ..+.+..++
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 113 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF----ANSFSLLLI 113 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH----HChHHHHHH
Confidence 3344566666665544 44566667778888899999999999999999999999888877666544 234556666
Q ss_pred HHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy3209 453 FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
.-++.+++.+. ..+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+..||+..|++.+++++++.++..
T Consensus 114 ~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 114 GRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 66667776665 34455588899999999999999999999999999999999999999999999888776666554444
Q ss_pred HhccCC
Q psy3209 533 FFIFET 538 (567)
Q Consensus 533 ~~~~~~ 538 (567)
...|+.
T Consensus 193 ~~~p~~ 198 (394)
T PRK10213 193 KSLPSL 198 (394)
T ss_pred HHCCCC
Confidence 444543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=119.43 Aligned_cols=142 Identities=19% Similarity=0.271 Sum_probs=119.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
+|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888877888889999999999999999988888777776666777888888889999999988888888
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccC
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPE 294 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpe 294 (567)
..++.|..|+ ++++++++.+....+|..+++.+++.+ ||+..|++.+++.++..+...+++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 8889998875 567999999988889999998888765 7999999988887776655555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=120.76 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=117.1
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+...+..
T Consensus 246 ~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 323 (392)
T PRK12382 246 KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPAL 323 (392)
T ss_pred cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 4544 34566777888889999999999999999999999999999998888888888888889999999999888888
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHh
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITF 289 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 289 (567)
.+.+.|.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+++.++.++..
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 324 GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999988887776 89999999888777644433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=119.13 Aligned_cols=170 Identities=10% Similarity=0.043 Sum_probs=126.9
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Q psy3209 363 TSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACF 441 (567)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 441 (567)
+..+......+.+..+.|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+..+..++.++...
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-- 94 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL-- 94 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH--
Confidence 333334444556677889988876655 34456666677788899999999999999999988887777766655443
Q ss_pred HhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHH
Q psy3209 442 YWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYA 521 (567)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~ 521 (567)
..+.+..++..++.+++.+.. .+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||++.|.+..
T Consensus 95 --~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 95 --SGTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred --hCCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 224445555566666666553 44455788999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHhccC
Q psy3209 522 ICSGINVLFTFFFIFE 537 (567)
Q Consensus 522 ~~~~~~~~~~~~~~~~ 537 (567)
.+..++.++.....++
T Consensus 172 ~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 172 PVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777666665555444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=118.74 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=112.2
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
+....|.+.++ +.+ .+.+.......++..++.++.|+++||+|+|+++..+.++.+++.+++.+......+.+..++.
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 33455654444 433 5566777788888999999999999999999999999888887777665532111233344444
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL-INKFYKIVQINFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
..+.+++.+....+.. ..+.+.+|+++|++++|+.+....+|+.+ +|.+...+....||+..|++.+++.++..++..
T Consensus 127 ~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~ 205 (452)
T PRK11273 127 LFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF 205 (452)
T ss_pred HHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655444443 67788899999999999999998888754 554433333345888888888877777666666
Q ss_pred HhccCC
Q psy3209 533 FFIFET 538 (567)
Q Consensus 533 ~~~~~~ 538 (567)
++.+++
T Consensus 206 ~~~~~~ 211 (452)
T PRK11273 206 AMMRDT 211 (452)
T ss_pred HHccCC
Confidence 666654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=114.90 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=120.1
Q ss_pred hHHHHHHhhhhhhhhccCC-ch-----hHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 371 GVSTILSYASTTLPEHHGL-IG-----RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
+......++|.+.++.+.. .+ .+.......+...++.++.|+++||+|||+.+..+.++..++.+++.. .
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~ 104 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL----A 104 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH----H
Confidence 4455666788888775543 22 245566677788899999999999999999998888777776665544 2
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.+.+..++..++.+++.+ ..+....+..+.+|+++|+.+.|+.+....+|..++|.+.+.+.+..||+..+++.+++.
T Consensus 105 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 182 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL 182 (408)
T ss_pred hhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 234444444455554432 334445678888999999999999999999999999999999999899998998888877
Q ss_pred HHHHHHHHHhccCC
Q psy3209 525 GINVLFTFFFIFET 538 (567)
Q Consensus 525 ~~~~~~~~~~~~~~ 538 (567)
++..++..++.++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (408)
T PRK09874 183 FLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHhccC
Confidence 77766665666554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-11 Score=122.77 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=130.9
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 366 LQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
+.............|.+.++.+.+ .+.++......++.+++.++.|++.||+|||+.+..+.++..++.++... .
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~ 87 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----A 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC----c
Confidence 333334455666778777776654 45677888888999999999999999999999999998888877766554 2
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.+.+..++..++.+++.+. ..+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+..||++.|++.+.+.
T Consensus 88 ~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~ 166 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166 (485)
T ss_pred CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence 3455555555666666554 345556899999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHhccCCC
Q psy3209 525 GINVLFTFFFIFETK 539 (567)
Q Consensus 525 ~~~~~~~~~~~~~~~ 539 (567)
++..++..+..++.+
T Consensus 167 ~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 167 IIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHHcCCcc
Confidence 777666656665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=115.55 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=119.4
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN-FDYWVS 450 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (567)
.......|.+..+.+.. .+.+.......++.+++.++.|+++||+|||+.+..+.++..++.+++....... .+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQV 95 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 34445556666665544 4556777778888999999999999999999999988887777766655532111 144555
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 530 (567)
++..++.+++.+.. .+...+++.|.+|+++|+.+.|+.+....+|..++|.+.+.+.+..||+..|++.++..+++.++
T Consensus 96 ~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 96 YVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55566666666553 44445899999999999999999999999999999999999999999998888877766655544
Q ss_pred HH
Q psy3209 531 TF 532 (567)
Q Consensus 531 ~~ 532 (567)
.+
T Consensus 175 ~~ 176 (365)
T TIGR00900 175 IV 176 (365)
T ss_pred HH
Confidence 43
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=117.99 Aligned_cols=175 Identities=13% Similarity=-0.018 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 437 (567)
..+++..+....-...+..-.|.+..+.+.. .+.++....+.++...+.+..|+++||+|||+.+..+..+..++.++.
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3344444444444556677788887776654 456677777888888899999999999999999999998888887776
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q psy3209 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSEL-FPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYM 516 (567)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~ 516 (567)
.. ..+.+..++.-.+.+++.+. ..+.....+.+. .|+++|+.+.|+......+|..++|.+.+.+.+..||++.
T Consensus 89 ~~----a~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 89 AF----SPTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HH----cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 65 23555556666666666654 333333445454 4778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhccCC
Q psy3209 517 FAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
|++...++++..++..++.|+.
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 9988877777766666666654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=116.04 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=122.4
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 360 VLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
.+.+..+.............|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 333333333334455556666665555544 5566777788889999999999999999999999988887777766655
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchh
Q psy3209 439 ACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG--LYYM 516 (567)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~ 516 (567)
.. .+.+..++..++.+++.+.... ...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+ |+..
T Consensus 96 ~~----~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~ 170 (405)
T TIGR00891 96 FA----PGYITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL 170 (405)
T ss_pred Hh----ccHHHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 42 2455555556666666665443 345889999999999999999999999999999999999888766 7777
Q ss_pred hhHHHHHHHHHHHHHHHhccCC
Q psy3209 517 FAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
|.+.++..++. ++.....||.
T Consensus 171 f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 171 FFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHHHHHHHHH-HHHHHhCCCC
Confidence 76654443333 3333444553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=114.48 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=120.2
Q ss_pred hHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy3209 371 GVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYW 448 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (567)
+.+....+.+.++++..+ + ...+.......+...+..++.|+++||+|||+.+..+..+..++.+.+.. ..+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~----~~~~~ 100 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI----AHEPW 100 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH----hccHH
Confidence 345566677777755433 3 44556666667777888899999999999999999998888887776654 22445
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH
Q psy3209 449 VSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINV 528 (567)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~ 528 (567)
..++..++.+++.+. ..+...+++.+.+|+++|+++.|+.+....+|..++|.+.+.+. ..||++.|++.+++.++..
T Consensus 101 ~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 101 LLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 555555555655543 33444578899999999999999999999999999999999998 6799888888877776665
Q ss_pred HHHHHhccC
Q psy3209 529 LFTFFFIFE 537 (567)
Q Consensus 529 ~~~~~~~~~ 537 (567)
++...+.++
T Consensus 179 i~~~~~~~~ 187 (400)
T PRK11646 179 AFNAWLLPA 187 (400)
T ss_pred HHHHHhCCc
Confidence 554455554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=116.18 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=124.9
Q ss_pred hhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3209 137 SVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTS 216 (567)
Q Consensus 137 ~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 216 (567)
....|...++ +|.++.+.|++.+...++..++.++.+++.||+|+|+++.++.++.++..++.+++++++.+++.
T Consensus 225 ~~~~~~~l~~-----~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T TIGR00902 225 YGFSAIYWQA-----AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLL 299 (382)
T ss_pred HHHHHHHHHH-----CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Confidence 3345555567 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHH
Q psy3209 217 RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFIT 288 (567)
Q Consensus 217 R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~ 288 (567)
++++|++.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ |+ ..|++.++++++.++.
T Consensus 300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 9999999999986 56788888888888877 54 4566666666554333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=115.88 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=113.8
Q ss_pred hhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 370 SGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
..++.+..++|.|+.+..+. .+++.....+.....++.+++|+++||+ |||+.+.++.++..++.+++... ...
T Consensus 23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---~~~ 99 (493)
T PRK15462 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---EIH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh---hcc
Confidence 35677888999998775333 4455666667777888999999999999 99999999998888887655431 111
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN--VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.....+...+...+.+. ..+...+++.|.+|++ +|.++.++.....++|+.++|.+.+++.+..||+..|.+.++..
T Consensus 100 ~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred hhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222223333344443 2343347899999975 79999999999999999999999999999999999988866655
Q ss_pred HHHHHH
Q psy3209 525 GINVLF 530 (567)
Q Consensus 525 ~~~~~~ 530 (567)
+++.+.
T Consensus 179 ~l~li~ 184 (493)
T PRK15462 179 IAGLVI 184 (493)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-10 Score=108.83 Aligned_cols=166 Identities=13% Similarity=0.068 Sum_probs=141.7
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 366 LQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
+......+.....+|.+-++.+-+ ...+.....++++..++.++...+.+|+.||++++....+..++.++..+.
T Consensus 23 F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA---- 98 (394)
T COG2814 23 FAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA---- 98 (394)
T ss_pred HHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 333345566777888888887766 567788899999999999999999999999999999999999998887772
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.+.+..++.=++.++..+. +.++..+...+++|+++|++++++.+....++..+|..++.++-+..||+.+|++.+++.
T Consensus 99 p~f~~Ll~aR~~~g~a~G~-f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ 177 (394)
T COG2814 99 PSFAVLLLARALAGLAHGV-FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLA 177 (394)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHH
Confidence 3666667777777777765 444556899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy3209 525 GINVLFTFFFIF 536 (567)
Q Consensus 525 ~~~~~~~~~~~~ 536 (567)
++..+..+..+|
T Consensus 178 ll~~~~~~~~lP 189 (394)
T COG2814 178 LLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHhCC
Confidence 999998888888
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=119.88 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=115.1
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
+....|.+. +.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++.+++.+++........+.+...+.
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVL 124 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 344455444 44433 4556777788889999999999999999999988888777777766654321111123333344
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI-NFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
.++.+++.+..+.+. ...+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..||+..|++.++++++..++.+
T Consensus 125 ~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 125 LFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred HHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455565555544444 4778899999999999999999999999999988776544 46899999988888877766666
Q ss_pred HhccCC
Q psy3209 533 FFIFET 538 (567)
Q Consensus 533 ~~~~~~ 538 (567)
++.+|.
T Consensus 204 ~~~~~~ 209 (438)
T TIGR00712 204 AMMRDT 209 (438)
T ss_pred HhccCC
Confidence 666553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=116.26 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=118.5
Q ss_pred hhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3209 138 VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSR 217 (567)
Q Consensus 138 ~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R 217 (567)
..+|...++ .|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... +........
T Consensus 221 ~~lp~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 292 (381)
T PRK03633 221 GLMPLYLNH-----QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPAL 292 (381)
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHH
Confidence 346666666 788999999999999999999999999999999999999988888877665443 223445577
Q ss_pred HHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcc
Q psy3209 218 LLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFI 292 (567)
Q Consensus 218 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~l 292 (567)
++.|++.+...|...+.+.|..|+++++...+.+.....+|..++|.+++.+ +|++.|++.+.+.++..+..++.
T Consensus 293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 8888887777888889999999888888888888888889999999888876 79999998877776654444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=114.46 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=124.6
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
.......|.+.++.+.+ .+.+.......++..++.++.|++.||+|||+.+..+..+.+++.++... .++.+..+
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~----~~~~~~l~ 95 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL----SSSYLMLA 95 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH----hCcHHHHH
Confidence 44555667766665544 45567778888999999999999999999999999998888887776555 23455556
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+..++.+++.+... +.......+.+|+++|+.+.++......++..++|.+.+.+.+..||++.|.+.+++.++..+..
T Consensus 96 ~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 96 IGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 66666666655433 33346788999988999999999999999999999999999998999999998888777766655
Q ss_pred HHhccCCC
Q psy3209 532 FFFIFETK 539 (567)
Q Consensus 532 ~~~~~~~~ 539 (567)
+...|+.+
T Consensus 175 ~~~lp~~~ 182 (382)
T PRK10091 175 YFWVPDIR 182 (382)
T ss_pred HHhCCCCC
Confidence 55566643
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-11 Score=117.08 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=120.5
Q ss_pred HHHHHhhh-hhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy3209 373 STILSYAS-TTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVS 450 (567)
Q Consensus 373 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (567)
.......| .+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++..++.++..+ . .+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~---~~~~~~ 88 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A---SNFWLL 88 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H---CCHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h---hhHHHH
Confidence 34455556 333343433 55667777888899999999999999999999999998888888444432 1 344456
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 530 (567)
++..++.+++.+.. .+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..|++.+++.++..++
T Consensus 89 ~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 89 LIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 66666777776553 44456899999999999999999999999999999999999998889999999999888888765
Q ss_pred HHHhccC
Q psy3209 531 TFFFIFE 537 (567)
Q Consensus 531 ~~~~~~~ 537 (567)
...+.++
T Consensus 168 ~~~~~~~ 174 (352)
T PF07690_consen 168 FILFLPE 174 (352)
T ss_dssp HHCCC--
T ss_pred Hhhhhhh
Confidence 4444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=121.16 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=121.2
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
..+....|.+.++.+.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++..++.+++... .+.+..+
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 87 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----TSLWVMA 87 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----hhHHHHH
Confidence 34455556555554444 556677788889999999999999999999999999988888877776652 2455555
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccchhhhHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLIN-KFYKIVQINFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~-~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 530 (567)
+..++.+++.+... +...+++.|.+|+++|+.+.++.+....+|..++| .+.+.+.+..+|+..|++.+++.++..++
T Consensus 88 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 88 ALWALNGIFQGMGW-PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred HHHHHHHhhccccC-CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 55666666665544 44458999999999999999999999999999999 46666667778888888887777766666
Q ss_pred HHHhccCC
Q psy3209 531 TFFFIFET 538 (567)
Q Consensus 531 ~~~~~~~~ 538 (567)
.+++.++.
T Consensus 167 ~~~~~~~~ 174 (379)
T TIGR00881 167 CFLLLRDS 174 (379)
T ss_pred HheeeCCC
Confidence 55555554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-10 Score=115.25 Aligned_cols=159 Identities=10% Similarity=-0.003 Sum_probs=110.7
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
..+....+.|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+.+.
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~s~~~ 126 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----SSATG 126 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----cCHHH
Confidence 3445555666666665544 344555666777888999999999999999999888877777766655442 23344
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhccchhhhHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI---------NFGLYYMFAFY 520 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---------~~g~~~~~~~~ 520 (567)
.++..++.+++.+. ..+. ..++.|.+|+++|+.++|+.+...++|+.+++.+.+.+.. ..||+++|++.
T Consensus 127 l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 127 FIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 44444555555443 3333 3578899999999999999998888888888777665532 14799999988
Q ss_pred HHHHHHHHHHHHHhc
Q psy3209 521 AICSGINVLFTFFFI 535 (567)
Q Consensus 521 ~~~~~~~~~~~~~~~ 535 (567)
+++.++..++.+++.
T Consensus 205 g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 205 GLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888777666655443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=120.72 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=123.3
Q ss_pred HHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy3209 127 FIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF 206 (567)
Q Consensus 127 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 206 (567)
+.............|.+.++ +|.+..+.++......++..++.+++|+++||+|||+.+.+++++.+++.++.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 294 FQQFTGINAIMYYSPTIFEN-----AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHHhCCeehHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556777777 8888888899999999999999999999999999999999998888888777763
Q ss_pred H-----h------hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q psy3209 207 A-----Q------SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QY 271 (567)
Q Consensus 207 ~-----~------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~w 271 (567)
. + +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+ +|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 1 2233333333333333334466677889999999999999999999999999999887765 79
Q ss_pred HHHHHHHHHHHHHHHH-HhhcccCCc
Q psy3209 272 QTLNIILGVIPLVFFI-TFMFIPETP 296 (567)
Q Consensus 272 r~~f~~~~~~~~~~~~-~~~~lpesp 296 (567)
++.|++.++++++..+ .+++.||++
T Consensus 449 ~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 449 GGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cceehhHHHHHHHHHHHHheecccCC
Confidence 9999988888777444 445567763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=118.48 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=115.1
Q ss_pred hhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh--hH-H-
Q psy3209 136 PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ--SS-Y- 211 (567)
Q Consensus 136 ~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~-~- 211 (567)
.....|.+.++ +|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. .
T Consensus 290 ~~~~~p~i~~~-----~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~ 364 (479)
T PRK10077 290 VLYYAPEIFKT-----LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 364 (479)
T ss_pred HHHHHHHHHHH-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH
Confidence 34455777777 888877777777788889999999999999999999999999999999888776542 11 1
Q ss_pred HHHHHHHHHhccccc-cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHH
Q psy3209 212 WLFTSRLLSGIGKGV-GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP----------YIQYQTLNIILGV 280 (567)
Q Consensus 212 ~l~~~R~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~----------~l~wr~~f~~~~~ 280 (567)
..+.+-++.+++.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+ ..+|++.|++.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 444 (479)
T PRK10077 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 444 (479)
T ss_pred HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHH
Confidence 222334444444433 23667899999999999999999999888888877754443 2368888888887
Q ss_pred HHHHH-HHHhhcccCCc
Q psy3209 281 IPLVF-FITFMFIPETP 296 (567)
Q Consensus 281 ~~~~~-~~~~~~lpesp 296 (567)
++++. ++.+++.||+.
T Consensus 445 ~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 445 MGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHhccccCC
Confidence 76664 44455678863
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=119.38 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhccccccccchhhhhhcccC
Q psy3209 165 TMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS----SYWLFTSRLLSGIGKGVGFTVVPMYIAEITD 240 (567)
Q Consensus 165 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 240 (567)
+..++..++.+++++++||+|||++++++..+.+++.++.++..+ ...+...-+...++..+..+....+..|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 344566678889999999999999999988888877766665321 1111111111222222234566777899999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhhh-h-------------hHHHHHHHHHHHHHHHHHhhcccCCc
Q psy3209 241 KEIRGTLSTMFTGHLYGGILFSLCVGPYI-Q-------------YQTLNIILGVIPLVFFITFMFIPETP 296 (567)
Q Consensus 241 ~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-~-------------wr~~f~~~~~~~~~~~~~~~~lpesp 296 (567)
.+.|+++.++.+....+|.++++.+.+.+ + +...|++.+++.++..+..+++||+.
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 99999999999999999999988776654 2 24567777777666555566789974
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-10 Score=112.90 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
...+.....+.++..++.++.|+++||+|||+++..+..+..++.++... ..+.+..++.-++.+++.+. ..+..
T Consensus 51 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~Gi~~~~-~~~~~ 125 (413)
T PRK15403 51 SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF----TTSMTQFLIARFIQGTSICF-IATVG 125 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34456666777888899999999999999999999888877777666554 23444555555566655443 33444
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
+.+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.+++.++.++..||++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 126 YVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 5778899999999999999999999999999999999998889999999988887777666555667654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=115.75 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=119.4
Q ss_pred HhhhHHHHHHhhhhhhhhc---cCC-chhHHHHHHHHHHHHHHHhhHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 368 RLSGVSTILSYASTTLPEH---HGL-IGRTECLIIFSVLLVVTNFACSPLVDI-AGRKTLNMLSAFLSSGVMIVLAACFY 442 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~ 442 (567)
.-.+++.+..++|.|+++. +.+ .+.+.....+.++..++.+++|+++|| +|||+.+..+.++..++.+++...
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-- 99 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-- 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 3345677888899998764 333 456677778888999999999999999 899999999999888887766651
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhH
Q psy3209 443 WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN---VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAF 519 (567)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~ 519 (567)
.+.+...+...+.+.+.+. ..+...++.++.+|++ .|+.+.++.+...++|..++|.+.+.+.+..||+..|.+
T Consensus 100 --~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 100 --IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred --ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 2333344444555555544 3344447888888865 388899999999999999999999999998899988888
Q ss_pred HHHHHHHHHHH
Q psy3209 520 YAICSGINVLF 530 (567)
Q Consensus 520 ~~~~~~~~~~~ 530 (567)
.++..+++.+.
T Consensus 177 ~~~~~~~~~l~ 187 (475)
T TIGR00924 177 AAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHH
Confidence 77655555433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=120.72 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=120.3
Q ss_pred chhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc--chhHHHHH--HHHHHHHHHHHHHHHhhH
Q psy3209 135 WPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF--GRKNTLLL--TSLVFLTSSLLTIFAQSS 210 (567)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~ 210 (567)
.....+|.+.++ +|.+..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.+++.+.+++
T Consensus 259 ~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 333 (455)
T TIGR00892 259 APIIFLVPYAKD-----KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDY 333 (455)
T ss_pred chHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 334455666677 899999999999999999999999999999973 44443333 444445566667778899
Q ss_pred HHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHH
Q psy3209 211 YWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVF 285 (567)
Q Consensus 211 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~ 285 (567)
+.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|.+++|.+++.+ +|++.|++.+++.++.
T Consensus 334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999998875 5999999888776553
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=113.61 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=121.5
Q ss_pred HHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy3209 372 VSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVS 450 (567)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (567)
...+.+++--++++.++. .--+........+.++..++.+++.+|+|+-+++..+..+..+=++.+... .++|..
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----~n~W~v 462 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----QNPWMV 462 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----cCchhe
Confidence 344445555566666543 222344555567788899999999999999999998888777776665552 367777
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIA-FALASFLINKFYKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
+..-++-++..+..+..+. +|++...|++.++++.|+.... ..+|-.+|++++|.+.+++|....|..+++.+++..+
T Consensus 463 LPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred eeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 7777888888888777776 8999999999999999998654 5788899999999999999999999998888877666
Q ss_pred HHHHh
Q psy3209 530 FTFFF 534 (567)
Q Consensus 530 ~~~~~ 534 (567)
+....
T Consensus 542 ~~~~i 546 (618)
T KOG3762|consen 542 LFISI 546 (618)
T ss_pred HHHHh
Confidence 54443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-10 Score=113.77 Aligned_cols=146 Identities=15% Similarity=0.040 Sum_probs=111.0
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
.........|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++..++.++..+. .+.+.
T Consensus 33 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~~~~ 108 (426)
T PRK12307 33 DFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA----SGVIM 108 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----hHHHH
Confidence 3344445555555555444 455667777888899999999999999999999999998888887766552 24555
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYA 521 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~ 521 (567)
.++.-++.+++.+... +....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..||+..|++.+
T Consensus 109 l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 109 LTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 5555666666655433 3445788999999999999999999999999999999988888889988887643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-10 Score=110.73 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=117.4
Q ss_pred HHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy3209 374 TILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYL 452 (567)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (567)
......|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.... ..+.+..++
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 101 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF----AHSLTVLIA 101 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----HccHHHHHH
Confidence 3334456666665544 45566777788889999999999999999999998888777776665543 223444444
Q ss_pred HHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy3209 453 FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
..++.+++.+. ..+....+..|.++.++++.+.++.+....++..++|.+.+.+.+..||+..|++.++..++..++..
T Consensus 102 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 102 ASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 55555555443 23344467788888899999999999999999999999999999888999889888776666555555
Q ss_pred HhccCCC
Q psy3209 533 FFIFETK 539 (567)
Q Consensus 533 ~~~~~~~ 539 (567)
++.+|++
T Consensus 181 ~~~~~~~ 187 (394)
T PRK11652 181 RWMPETR 187 (394)
T ss_pred HhCCccC
Confidence 5566643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-10 Score=111.99 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=117.7
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
..+...+|.+.++.+.+ ...+.......++..++.++.|+++||+|||+.+..+..+..++.+..... .+.+..+
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~~~~l~ 105 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----QSIEQFT 105 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----ccHHHHH
Confidence 33344455555555443 344566677778889999999999999999999998887777776665441 2344444
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+..++.+.+.+. ..+...+...|.+|++.|+.+.++......++..++|.+.+.+.+..+|++.+++.+++.+++.+..
T Consensus 106 ~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 106 LLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 444555555443 2344457888999999999999998888889999999999999998899999988888877776655
Q ss_pred HHhccCCC
Q psy3209 532 FFFIFETK 539 (567)
Q Consensus 532 ~~~~~~~~ 539 (567)
+...|+++
T Consensus 185 ~~~~~~~~ 192 (406)
T PRK15402 185 WRAMPETA 192 (406)
T ss_pred HHhCCCCC
Confidence 55566554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=114.21 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=110.4
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
.....+.+.++++.+.+ .+.+.......++..++.++.|++.||+|||+.+..+..+..++.+++........+.+..+
T Consensus 30 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (402)
T TIGR00897 30 GLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLIL 109 (402)
T ss_pred hhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence 34555677777776555 56677788888999999999999999999999999988888777654432111112333444
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALAS-FLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 530 (567)
+...+.+++.+... +.......+.+|+++|++++|+.+....+|. .++|.+.+.+.+..|+...++....+.+++.++
T Consensus 110 ~~~~i~G~g~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 110 LFYGIRGLGYPLFA-YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVI 188 (402)
T ss_pred HHHHHHHcchHHHH-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 44444455444322 2233567788899999999999999999986 578998888888778655555444443343333
Q ss_pred HHHhcc
Q psy3209 531 TFFFIF 536 (567)
Q Consensus 531 ~~~~~~ 536 (567)
..++.+
T Consensus 189 ~~~~~~ 194 (402)
T TIGR00897 189 ALFSNK 194 (402)
T ss_pred HHhccC
Confidence 333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-09 Score=101.92 Aligned_cols=307 Identities=16% Similarity=0.152 Sum_probs=181.0
Q ss_pred HHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCC
Q psy3209 163 VATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKE 242 (567)
Q Consensus 163 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 242 (567)
.++-+..+.++.++.+.+.|+.|.|+.++++...+....+..-+- |-+.++++-.+.|+|.+..+..-..|++|...++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677788889999999999999999999999999998887777665 5677889999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhh------------hhH-HHH----------HHHHHHH---HHHHHHhhcccCCc
Q psy3209 243 IRGTLSTMFTGHLYGGILFSLCVGPYI------------QYQ-TLN----------IILGVIP---LVFFITFMFIPETP 296 (567)
Q Consensus 243 ~r~~~~~~~~~~~~~G~~i~~~l~~~l------------~wr-~~f----------~~~~~~~---~~~~~~~~~lpesp 296 (567)
.+.+..++..+....+.++|+++-..+ +-+ +.+ .+.+++. .+.++...++|..-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999988888888887665443 111 111 1111111 11122222333221
Q ss_pred hhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHH
Q psy3209 297 YFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTIL 376 (567)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (567)
.. . +.+.. + ....+.-....+++++++. +..+ ..++..........
T Consensus 215 -~~--------~-----------------~~~~~-~--~~~~~~l~~~~~l~~~~~m----l~L~-~~f~~tG~~~Sf~~ 260 (461)
T KOG3098|consen 215 -VV--------N-----------------CKSSS-E--TSFSELLKLTFKLLKTPKM----LLLF-PFFFYTGLETSFWI 260 (461)
T ss_pred -hh--------h-----------------hhhhc-c--ccHHHHHHHHHHHhcCHhH----HHHH-HHHHHHHHHHHHHH
Confidence 00 0 00000 0 0000000111223333221 1111 11111111112222
Q ss_pred Hhhhhhhhhc-c-CC---chhHHHHHHHHHHHHHHHhhHHHHHhh---hcchHHHHHHHHHHHHHHHHHHHHHHhhh---
Q psy3209 377 SYASTTLPEH-H-GL---IGRTECLIIFSVLLVVTNFACSPLVDI---AGRKTLNMLSAFLSSGVMIVLAACFYWNF--- 445 (567)
Q Consensus 377 ~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 445 (567)
...|.-+.-. . .. .-.+...+..+++.++++...+.+.+| +|+++.+.++..+..+..++.......+.
T Consensus 261 ~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~ 340 (461)
T KOG3098|consen 261 SIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLR 340 (461)
T ss_pred hccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCC
Confidence 2333332222 1 11 122344555567777777777777765 57788888777777666665544322111
Q ss_pred -----------hhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 446 -----------DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKI 506 (567)
Q Consensus 446 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 506 (567)
......+..++.|++-++ +....+.++...+| +.|..+.++.-.-..++..++-...+.
T Consensus 341 ~t~~~~~~~~~~~~~~~ii~~l~G~~D~~-~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 341 PTDSPPLLFTPSYYLALIIGFLLGFGDAC-FNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred CCcccccccccchhHHHHHHHHHhhHHHH-HHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 123444555556665554 44444577888885 778999998888888877776655444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=117.43 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred hhhhhhhh-hhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHH--HHHhhHHH
Q psy3209 136 PSVALYKW-QTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLT--IFAQSSYW 212 (567)
Q Consensus 136 ~~~~l~~i-~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~--~~~~~~~~ 212 (567)
...-+|.. .++ +|.+..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..+. ...++.+.
T Consensus 277 ~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (467)
T PRK09556 277 IDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYM 351 (467)
T ss_pred HHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33445543 455 89999999999999999999999999999999999988776655444433222 23356666
Q ss_pred HHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHH-HHHHHHHhhhhh----------------hhHHHH
Q psy3209 213 LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYG-GILFSLCVGPYI----------------QYQTLN 275 (567)
Q Consensus 213 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l----------------~wr~~f 275 (567)
+.+++++.|++...........+.|.+|++.||.+.|+.+....+ |..++|.+.+.+ +|+..|
T Consensus 352 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f 431 (467)
T PRK09556 352 YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTF 431 (467)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHH
Confidence 778888888654333333345677999999999999999877665 656665554433 489999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3209 276 IILGVIPLVFFITFM 290 (567)
Q Consensus 276 ~~~~~~~~~~~~~~~ 290 (567)
++.++..++.++..+
T Consensus 432 ~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 432 AALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766666444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-10 Score=109.59 Aligned_cols=166 Identities=15% Similarity=0.063 Sum_probs=113.5
Q ss_pred HHhhhHHHHHHhhhhhhhhc-cCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 367 QRLSGVSTILSYASTTLPEH-HGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN 444 (567)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (567)
..+...+.+..+.|.++++. +.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++..++.+++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~--- 88 (366)
T TIGR00886 12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV--- 88 (366)
T ss_pred HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---
Confidence 33344566677777645443 333 4556777788889999999999999999999999999888888877665521
Q ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hccc
Q psy3209 445 FDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN----------FGLY 514 (567)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~----------~g~~ 514 (567)
.+.+..++..++.+++.+ .+.+ ...++.+.+|+++|+.+.++.....++|..+++.+.+.+... .+|+
T Consensus 89 ~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 89 QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 034444445555555433 2333 347889999999999999999988888888888887776653 3677
Q ss_pred hhh-hHHHHHHHHHHHHHHHhccC
Q psy3209 515 YMF-AFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 515 ~~~-~~~~~~~~~~~~~~~~~~~~ 537 (567)
+.+ ...+++..+..++.+...++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc
Confidence 777 43344444444444444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=119.24 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccccccccchhhhhhcccC
Q psy3209 163 VATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS--YWLFTSRLLSGIGKGVGFTVVPMYIAEITD 240 (567)
Q Consensus 163 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 240 (567)
.....+....+.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556777888899999999999999999999999998888877654 455556677777777778888899999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhcccCCc
Q psy3209 241 KEIRGTLSTMFTGHLYGGILFSLCVGPYI--QYQTLNIILGVIPLVFFITFMFIPETP 296 (567)
Q Consensus 241 ~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~lpesp 296 (567)
++.|+.++++.+....+|.+++|.+.+.. ++...+++.++..++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999988732 566777777777777666677889873
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=116.36 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=110.4
Q ss_pred chhhhhhhhh-hcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHH--HHHHHH--hh
Q psy3209 135 WPSVALYKWQ-TKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS--LLTIFA--QS 209 (567)
Q Consensus 135 ~~~~~l~~i~-~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~~--~~ 209 (567)
.....+|.+. ++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+. ++
T Consensus 237 ~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (394)
T TIGR00883 237 LITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS 311 (394)
T ss_pred HHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3344455555 45 78899999999999999999999999999999999998876555544433 222222 46
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh----h-hHHHHHHHHHHHH
Q psy3209 210 SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCVGPYI----Q-YQTLNIILGVIPL 283 (567)
Q Consensus 210 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l----~-wr~~f~~~~~~~~ 283 (567)
.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+ | |++.++...+..+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 677778889999998888899999999999999999999874 566677887888777765 5 8877776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-10 Score=113.23 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=107.3
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhcccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA----QSSYWLFTSRLLSGIGKGVG 227 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~ 227 (567)
+|.+......+.....+...++.++.|+++||+|||++++.+.++..++.+..... ++.+.++++.++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 78887766666666677778889999999999999999988877666554433331 23444455667778888877
Q ss_pred ccchhhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3209 228 FTVVPMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPYI------QYQTLNIILGVIPLVFFITFMFIPET 295 (567)
Q Consensus 228 ~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~lpes 295 (567)
.+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+ +|+..+.+.++.+++..+..+.++|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888899999999999988888854 44557888888777765 37888887777777665555666765
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=108.57 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHH
Q psy3209 357 LIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435 (567)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 435 (567)
..+..++.++........+....|.+.++.+.+ .+.+.......++..++.++.|++.||+|||+.+..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333333333445556677766665544 4556667777888999999999999999999999888877777766
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc
Q psy3209 436 VLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI-NFGLY 514 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~ 514 (567)
+.... .+.+..++..++.+++.+...... ..++.|.+|+++|+.+.++.+....+++.++|.+.+.+.+ ..||+
T Consensus 88 l~~~~----~~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~ 162 (394)
T PRK03699 88 GLMFS----HSLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162 (394)
T ss_pred HHHHc----chHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 65542 244445555566666665544434 4788999999999999999988889999999999888765 46899
Q ss_pred hhhhHHHHHHHHHHHH
Q psy3209 515 YMFAFYAICSGINVLF 530 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~ 530 (567)
..|.+.+++.++..++
T Consensus 163 ~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 163 WVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877766665444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-10 Score=114.80 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=115.0
Q ss_pred HHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q psy3209 360 VLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLA 438 (567)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 438 (567)
.+.+..+.............|.+..+.+.+ .+.+.......++.+++.++.|++.||+|||+.+..+.++..++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 103 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG 103 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333343333334445555666666555544 3455667777788899999999999999999999988888877777665
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q psy3209 439 ACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFA 518 (567)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~ 518 (567)
.. .+.+..++..++.+++.+... +....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||++.|.
T Consensus 104 ~~----~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~ 178 (496)
T PRK03893 104 FA----PGYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF 178 (496)
T ss_pred HH----hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 52 244555555566666555433 3345789999999999999999999999999999999999999889988777
Q ss_pred HHH
Q psy3209 519 FYA 521 (567)
Q Consensus 519 ~~~ 521 (567)
+.+
T Consensus 179 ~~~ 181 (496)
T PRK03893 179 IGI 181 (496)
T ss_pred HHH
Confidence 543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-10 Score=111.90 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=122.3
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
.....|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+.++..++..++... .+.+..++.
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~ 85 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----QTIDQLIYM 85 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----ccHHHHHHH
Confidence 345566666665544 455677778888899999999999999999999999888888777766552 234445555
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
.++.+++.+.. .+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+++.++..++...
T Consensus 86 ~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 86 RFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 55566655543 33445889999999999999999999999999999999999999889998888888877777666655
Q ss_pred hccCC
Q psy3209 534 FIFET 538 (567)
Q Consensus 534 ~~~~~ 538 (567)
..+++
T Consensus 165 ~~~~~ 169 (377)
T PRK11102 165 FIPET 169 (377)
T ss_pred hCCcc
Confidence 66654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=115.36 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=122.7
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
+|.+..+.+++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.+...+..
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ 333 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999888888888888888888888888888888889999999988777777
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH-HHHHhhcccCCc
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV-FFITFMFIPETP 296 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~-~~~~~~~lpesp 296 (567)
.+++.|..|++.||++++++.....+|..+|+.+.+.+ |++..+++.++..++ .++....+|+.+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 88999999999999999999988888888888887776 667777776666555 445555667653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=108.43 Aligned_cols=161 Identities=11% Similarity=-0.035 Sum_probs=115.6
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (567)
..+....|.+.++.+.+ .+.+.....+.++..++.+..|+++||+|||+++.........+. +... . ..+....+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~-~--~~~~~~l~ 83 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLL-D--PFNYEWLL 83 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHH-H--hccHHHHH
Confidence 34445566666655544 455677777788899999999999999999887654443333322 1111 1 12444555
Q ss_pred HHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q psy3209 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 531 (567)
+.-++.+.+.+. ..+. ....+|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++.
T Consensus 84 ~~R~l~G~g~~~-~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 84 ACQLLAALGQPF-LLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHhHhHH-HHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 555666666553 2333 35668999999999999999999999999999999999999999999999888888877777
Q ss_pred HHhccCCC
Q psy3209 532 FFFIFETK 539 (567)
Q Consensus 532 ~~~~~~~~ 539 (567)
++..||..
T Consensus 162 ~~~lp~~p 169 (368)
T TIGR00903 162 LAALPALP 169 (368)
T ss_pred HHHcCCCC
Confidence 77777653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=108.41 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=110.2
Q ss_pred hhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy3209 379 ASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLF 457 (567)
Q Consensus 379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (567)
.|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+..+..++.++... ..+.+..++..++.
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~ 104 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW----VESAAQLLVLRFVQ 104 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHH
Confidence 34344444433 45567777788888999999999999999999998888777766665544 12344444444555
Q ss_pred HHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
+++.+.. .+...++..|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..++.+..
T Consensus 105 G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 105 AVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 5544332 233346788999999899999999888999999999999999999999988888877777665554333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=114.22 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhh
Q psy3209 391 GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPT 470 (567)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (567)
..+.....+.++.+++.++.|++.||+|+|+.+..+.++..++.++..... ..+.+..++.-++.|++.+.. .+...
T Consensus 77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~~~~-~~~~~ 153 (465)
T TIGR00894 77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--GGGIALVVFCRVIQGLAQGSV-SPATH 153 (465)
T ss_pred HhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHhcccc-hhhHH
Confidence 345667777888999999999999999999999988887777666544321 122344455556666666654 44445
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 471 TLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN-FGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 471 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
.++.|.+|+++|+++.|+.+....+|.++++.+.+.+.+. .||+.+|.+.++..++..++.+.+.++
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999988 499999999888777766655555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=113.06 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=118.0
Q ss_pred hhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Q psy3209 136 PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ-SSYWLF 214 (567)
Q Consensus 136 ~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~ 214 (567)
....+|.+..+ +|.+..+.++..+.+.++..++.++.|++.||+|||+.+.++..+..++.++....+ +...+
T Consensus 224 ~~~~lp~~l~~-----~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 297 (393)
T PRK09705 224 LIAWLPAFYIE-----IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL- 297 (393)
T ss_pred HHHHHHHHHHH-----cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence 33456666667 799999999999999999999999999999999999999998888877776554333 22222
Q ss_pred HHHHHHhccccccccchhhhhhcccC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHH-HH
Q psy3209 215 TSRLLSGIGKGVGFTVVPMYIAEITD-KEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVF-FI 287 (567)
Q Consensus 215 ~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~-~~ 287 (567)
.-++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++ +|...|++.++.+++. ++
T Consensus 298 -~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK09705 298 -WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII 376 (393)
T ss_pred -HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 2346688888777877766677775 57889999999988888888888888776 3777788777766653 44
Q ss_pred HhhcccCCc
Q psy3209 288 TFMFIPETP 296 (567)
Q Consensus 288 ~~~~lpesp 296 (567)
...+.||++
T Consensus 377 ~~~~~~~~~ 385 (393)
T PRK09705 377 TLRFAPARF 385 (393)
T ss_pred HHHhccccc
Confidence 456678874
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.8e-10 Score=93.00 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCC
Q psy3209 398 IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELF 477 (567)
Q Consensus 398 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (567)
...++.+++.++.+++.||++||+.+..+..+..++.+.+... .+.+...+..++.+.+.+.. .+....+..|.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 80 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS----SNITVLIIARFLQGFGAAFA-LVAGAALIADIY 80 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHC
Confidence 3456788899999999999999999888877777666655441 23444455555666655543 344458899999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 478 PTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 478 p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
|++.|+++.++.+....++..++|.+.+.+.+..++...+.+.++..+++.+..+...+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999988888888888877777776665555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=109.75 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=110.5
Q ss_pred hhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 370 SGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDI-AGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
.+++.+..+++.|+++..+. .+.......+.....+..+++|+++|| +|||+.+..+.++..++.+.+.+.. ..
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~~ 104 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---LK 104 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 35677777888888765443 333444455555666777799999999 9999999999999998887776521 11
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN--VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
....++...+.+++.+... +...+++.|.+|++ +|+.+.++.....++|..++|.+.|++.+..||++.|++.++..
T Consensus 105 ~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred hhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 2222234445555555433 44458999999877 45788999999999999999999999999999999888765433
Q ss_pred H
Q psy3209 525 G 525 (567)
Q Consensus 525 ~ 525 (567)
+
T Consensus 184 ~ 184 (489)
T PRK10207 184 I 184 (489)
T ss_pred H
Confidence 3
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-11 Score=113.31 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
...++....+.+...+++++.|++.||++|++++.+|..+-.++.+...+. ...|...+.-.+.|++-+. +.++.
T Consensus 68 s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----~~Fwq~~l~R~~vGiGeAs-~~~ia 142 (493)
T KOG1330|consen 68 SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----NHFWQVLLCRGFVGIGEAS-YSPIA 142 (493)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccchhh-hcccc
Confidence 455678888899999999999999999999999999998888887776663 3567777777788888765 56666
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHhccCCCCCCHH
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSGINVLFTFFFIFETKGKSFQ 544 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (567)
.++++|.+|..+|++++++.+++..+|.++|-.+.+.+....+ |++.|.+.+++.++..++.+++.+|.+++..+
T Consensus 143 ~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 143 PSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred hhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 7999999999999999999999999999998888888777766 99999999999999999998998887765433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=107.48 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=115.0
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRL 218 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 218 (567)
.+|...++ .|.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+++++++.+++..+
T Consensus 227 ~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (382)
T PRK11128 227 FSAIYWQA-----AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQI 301 (382)
T ss_pred HHHHHHHH-----CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445566 8999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHhccccccccchhhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHH
Q psy3209 219 LSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVF 285 (567)
Q Consensus 219 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~ 285 (567)
+.|++.+...+....++.+. +++++++..++.+ ....+|..+|+.+++.+ |+ ..|+..++++++.
T Consensus 302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 99999998888888888887 5666788888876 55667777888877776 55 4555555555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=110.22 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=125.5
Q ss_pred chhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3209 135 WPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLF 214 (567)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 214 (567)
.+...+|.+.++ .+|.+....|++.+++.+|..+|+++.+.+.+|+++++++..+.++++++.+..+++++.+..+
T Consensus 236 a~~aLlPl~a~~----~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~ 311 (524)
T PF05977_consen 236 AVWALLPLFARD----VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLAL 311 (524)
T ss_pred HHHHhhhHHHHH----HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHH
Confidence 334567777644 2788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy3209 215 TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV 284 (567)
Q Consensus 215 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~ 284 (567)
++-++.|++.....+...+.+.+..|++.|||.++++++....+..+|..+.+.+ |-+..+.+.++..++
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999888888889999999999999999999877777777777666665 777777776665444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=100.68 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=95.7
Q ss_pred HHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchh
Q psy3209 167 DLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGT 246 (567)
Q Consensus 167 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~ 246 (567)
.+.-.-|.++.+++.||+|||+.|..+++++++..++...+.+-....+.-|..-++.++.+.+.++|..|.+|..-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 35566788999999999999999999999999999988877654443333344444445556788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhccc
Q psy3209 247 LSTMFTGHLYGGILFSLCVGPYI--QYQTLNIILGVIPLVFFITFMFIP 293 (567)
Q Consensus 247 ~~~~~~~~~~~G~~i~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~lp 293 (567)
..|....+.-+|.++.|+++-.. +-.....+.+.+.++..++..++|
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence 99999999999999999998333 233344444555555555555555
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-08 Score=99.98 Aligned_cols=181 Identities=13% Similarity=0.006 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhh-hccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLP-EHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
+.+....+.+...+...+.+....+.+-+ +.+.+ .+.+....+..+...++++..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34445555555544444444444444433 23332 44556666777888888999999999999999999988888777
Q ss_pred HHHHHHHHH-hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy3209 434 MIVLAACFY-WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ---- 508 (567)
Q Consensus 434 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~---- 508 (567)
.+.+.+... ...+.+..++..++.|++ +..+.+ ....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus 114 ~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 114 CVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 766654210 113455566666666665 333444 4578999999999999999997777777776666655433
Q ss_pred -Hhh-------------ccchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 509 -INF-------------GLYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 509 -~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
+.. +++.+.++++.+.++..++.+++.++.
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 222 344555566676666666666555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-09 Score=106.31 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=106.4
Q ss_pred hhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 370 SGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDI-AGRKTLNMLSAFLSSGVMIVLAACFYWNFD 446 (567)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (567)
.+++.+..+++.|+.+..+. .+.......+........+++|+++|| +|||+.+..+.++..++..++.+. ...
T Consensus 35 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~~ 111 (500)
T PRK09584 35 FGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GHD 111 (500)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---ccc
Confidence 35667778888888665443 223333333333444455689999999 599999999988888876665541 112
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhcccCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q psy3209 447 YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN--VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICS 524 (567)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~ 524 (567)
.+...+...+.+++.+.. .+...++..+.+|++ ++..+.++.+...++|..++|.+.|++.+..||++.|.+.++..
T Consensus 112 ~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~ 190 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM 190 (500)
T ss_pred HHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 223333444555555543 344447889999754 34567888899999999999999999999999999998877554
Q ss_pred HHHH
Q psy3209 525 GINV 528 (567)
Q Consensus 525 ~~~~ 528 (567)
+++.
T Consensus 191 ~i~~ 194 (500)
T PRK09584 191 LITV 194 (500)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=102.01 Aligned_cols=154 Identities=6% Similarity=-0.062 Sum_probs=114.1
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF 453 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (567)
.....|.+.++.+.+ .+.+.......++.+++++..|++.||+|||+.+..+..+.+++.+++.... ...+.+..++.
T Consensus 22 ~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-~~~~~~~~l~~ 100 (410)
T TIGR00885 22 TNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-EIMNYTLFLVG 100 (410)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHH
Confidence 335556665544444 4567778888899999999999999999999999999999888877654422 12244555556
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN----------------------- 510 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~----------------------- 510 (567)
.++.+.+.+....+.. .++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 101 ~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (410)
T TIGR00885 101 LFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH 179 (410)
T ss_pred HHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence 6677777666544443 7788888999999999999999999999999998877422
Q ss_pred ---hccchhhhHHHHHHHHHHHH
Q psy3209 511 ---FGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 511 ---~g~~~~~~~~~~~~~~~~~~ 530 (567)
.+|+.+|.+.+++.++..++
T Consensus 180 ~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 180 SDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888777766655444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=102.75 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=105.1
Q ss_pred hhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy3209 378 YASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSL 456 (567)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (567)
..+....+.+.+ ...+.....+.+...+..++.|+++||+|||+++..+..+..++.+.+.... +. ++..++
T Consensus 25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~----~~---~~~r~l 97 (393)
T PRK11195 25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI----HP---LLAYGL 97 (393)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH----HH---HHHHHH
Confidence 334444444433 3445667777888999999999999999999999999888877666544311 11 333345
Q ss_pred HHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 457 FGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
.+.+.+. ..|...+++.|.+|+++|+++.|+.+....++..+||.+.|.+.+.. +...+.+.+...+++ ++.....+
T Consensus 98 ~G~~~a~-~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~ 174 (393)
T PRK11195 98 VGIGAAA-YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIP 174 (393)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCC
Confidence 5555554 45666689999999999999999999999999999999999998853 444444444333333 23334455
Q ss_pred CC
Q psy3209 537 ET 538 (567)
Q Consensus 537 ~~ 538 (567)
+.
T Consensus 175 ~~ 176 (393)
T PRK11195 175 RL 176 (393)
T ss_pred CC
Confidence 43
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=106.44 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=112.2
Q ss_pred cCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchh
Q psy3209 153 ELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVP 232 (567)
Q Consensus 153 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 232 (567)
+.+....+++.++..+...++.++.|++.||+|||+.+.++.++.+++.++.+++++.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666788999999999999999999999999999999999999999888878888999999999999998776666666
Q ss_pred hhhhcccCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy3209 233 MYIAEITDKEIRGTLSTM-FTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFF 286 (567)
Q Consensus 233 ~~i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~ 286 (567)
.++.+..+++.++...+. .+....+|.++++.+++.+ ||+..|.+.+++.++..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 777888888888776665 5677888888888777766 88999999888876643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-09 Score=104.72 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=126.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchh--HHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHh
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRK--NTLLLTSLVFLTSSLLTIF--------AQSSYWLFTSRLLSG 221 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~R~l~G 221 (567)
+|++..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+ .++.+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 8999999888777766666 678888999999999
Q ss_pred ccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhcccC
Q psy3209 222 IGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFITFMFIPE 294 (567)
Q Consensus 222 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~lpe 294 (567)
++.|..++...++.+|+.|+++.+..+|++....-...++||++.+.+ +-|+.+....++.++.+++.++++.
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999888877 4788888777777766666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=96.49 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=117.6
Q ss_pred hhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy3209 378 YASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSL 456 (567)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (567)
..+.+-.+.+.+ .+..+...+..+.+.+.++.-|.+.||+|.|+....+.++..+-++.+.+... ..+.+..+++..+
T Consensus 36 l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-~~~~~~ll~~gll 114 (417)
T COG2223 36 LGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-YPSTWQLLVIGLL 114 (417)
T ss_pred HHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHH
Confidence 333333333433 45567777888899999999999999999999999999888888777776432 2223444444444
Q ss_pred HHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhhHHHHHHHHHHHHHHH
Q psy3209 457 FGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG---LYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~ 533 (567)
.|++.+ ...+...+++..||++++|.+.|+.. .+|+|..+...+.+.+....| |+.+..+.....++..++.++
T Consensus 115 ~G~~Ga--sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 115 LGLAGA--SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred Hhcccc--eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 33344478999999999999999999 999999999999999999988 888888888888887777777
Q ss_pred hccC
Q psy3209 534 FIFE 537 (567)
Q Consensus 534 ~~~~ 537 (567)
..++
T Consensus 192 ~~~d 195 (417)
T COG2223 192 GMND 195 (417)
T ss_pred HhCC
Confidence 6654
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=100.31 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhhccccchh
Q psy3209 391 GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLF-TSLFGITYSLGIGIIP 469 (567)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 469 (567)
-++.....+++..++.++..|.++||+|||.++.++.+..++...+.+.. .+. ..++. =++.|+.- +...+.
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S----~~F-~afv~aR~l~Gi~k--gnl~v~ 141 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS----RNF-AAFVLARFLGGIFK--GNLSVI 141 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHhhhhcc--CchHHH
Confidence 34567778889999999999999999999999999988888866665551 122 22222 33333333 233444
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
.++++|++++++|+.+++.+++...+|.++||.++|++..
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5999999999999999999999999999999999999987
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=92.98 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=123.8
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
|+.++...+.....|... .++..-|++++. +|.|.+|.+.+.++-.+|..+| ++.|.+.|++|++.++.+|.+
T Consensus 2 W~~l~a~~~v~~~~Gt~Y-~Fs~yS~~Lk~~-----l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~ 74 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGTTY-TFSAYSPQLKSR-----LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAV 74 (250)
T ss_pred hhhHHHHHHHHHhcCccc-chhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHH
Confidence 454444444444444222 233445667777 9999999999999999999875 889999999999999999999
Q ss_pred HHHHHHHHHHHH-------hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 196 VFLTSSLLTIFA-------QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 196 ~~~i~~~~~~~~-------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
...+|..+...+ .++|.+.+..++.|.+.+....++.....+.|| ++||.+.++.-...+++..+-..+...
T Consensus 75 ~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 75 LGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred HHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH
Confidence 999999877663 367888888899999887777777777778897 579999999999999988776655554
Q ss_pred h---hhHHHHHHHHHHH-HHHHHHhhcccC
Q psy3209 269 I---QYQTLNIILGVIP-LVFFITFMFIPE 294 (567)
Q Consensus 269 l---~wr~~f~~~~~~~-~~~~~~~~~lpe 294 (567)
+ +-...+.+.++.. ++.++..++++.
T Consensus 154 ~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 154 FFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 4 2233333334433 334444445543
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=101.33 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=125.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
...+..+...++.+++.+++.|.+.||+|+|..+++|.+++..+.+++++ ..+.+..++.=.+-+.+.++...+..
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf----g~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF----GNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH----cchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 45667888889999999999999999999999999999999999888887 33556666666777888777666664
Q ss_pred hhhcccCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 470 TTLLSELFPTNV-KSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 470 ~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
+++++.||.+. |++++|+.-.+..+|..++|.++|.+++..|.+.+|+++++++++..++.++..+.++.
T Consensus 182 -amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 182 -AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred -HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 89999999875 69999999999999999999999999999999999999999999988887666655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-08 Score=103.25 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=97.8
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccccccccchhh
Q psy3209 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA-QSSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 155 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
+..+.+++.+...++..++.+++++++||+|+|+++.++..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999999888888777665 35677778889999999988888889
Q ss_pred hhhcccC-------CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 234 YIAEITD-------KEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 234 ~i~e~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988865 45679999999998888888888877765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=103.35 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=91.5
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH--H--HhhHHHHHHHHHHHhcccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI--F--AQSSYWLFTSRLLSGIGKGVG 227 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~l~~~R~l~G~~~g~~ 227 (567)
+|.+..+.++..++..++..+++++.|+++||+|||+++.++..+.++..+... . ..+....+..-++.+++.+..
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY 353 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 788888999989888888899999999999999999988776665444333221 1 122222222222233333333
Q ss_pred ccchhhhhhcccCCCcchhHHHHHHHHHH-HHHHHHHHhhhhh---h-hHHHHHHHHHHHHHHHHHhhcccC
Q psy3209 228 FTVVPMYIAEITDKEIRGTLSTMFTGHLY-GGILFSLCVGPYI---Q-YQTLNIILGVIPLVFFITFMFIPE 294 (567)
Q Consensus 228 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~-~G~~i~~~l~~~l---~-wr~~f~~~~~~~~~~~~~~~~lpe 294 (567)
.+....++.|++|++.|+.++|+.+.... +.....|.+...+ | |...+++.++..++..+..+++++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566788999999999999999875433 3233366655554 3 555566555555554444444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=101.40 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=107.0
Q ss_pred hhhhhhcccCCCccCChhhHHHHHHHHH-HHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH------HhhHHH
Q psy3209 140 LYKWQTKEYVLPFELDAEKVSWVVATMD-LGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF------AQSSYW 212 (567)
Q Consensus 140 l~~i~~~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~ 212 (567)
.+...+| .|.++++.+++..... ....++.++.|++.||+|+|+++.++..+.++..+.... .++...
T Consensus 231 ~~~~l~~-----~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
T TIGR02718 231 SKLYLVD-----AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV 305 (390)
T ss_pred hhHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence 4455566 8999999999988876 466778899999999999999998887766443333222 123334
Q ss_pred HHHHHHHHhccccccccchhhhhhcccCC-CcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHH
Q psy3209 213 LFTSRLLSGIGKGVGFTVVPMYIAEITDK-EIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFF 286 (567)
Q Consensus 213 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~ 286 (567)
++....+.+++.+...+...+.+.+..++ +++++.+++.+....+|..++|.+++.+ ||+..|++.+++.++.+
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45555666777777777777777777766 8899999999999999999999988876 78888888777666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=119.48 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=114.4
Q ss_pred ccCChh-hHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccc
Q psy3209 152 FELDAE-KVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230 (567)
Q Consensus 152 ~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~ 230 (567)
+|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++.++..+.+.++++.++.|++.+...+.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 788888 9999999999999999999999999999999999999999999988888889999999999999999998888
Q ss_pred hhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHH
Q psy3209 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIP 282 (567)
Q Consensus 231 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~ 282 (567)
..+++.+..|+++||+++++.+....+|.++++.++..+ ++...|++.+.+.
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 899999999999999999999988888887777776655 3445555554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=113.28 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhh
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTL 472 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (567)
++....+.+..++.++++|+++||++||+++.....+..+...+... .....+.+..+++.++.+++.++ +.|...++
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~~~l~gi~~a~-~~p~~~a~ 132 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIY-GFHLNSVPLLFAALFLMGIHSAL-FGPIKYSI 132 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHh-hchHHHHh
Confidence 34555667778899999999999999999764422222222221111 11123556666666777776665 45666799
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 473 LSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 473 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
+.+.+|++.++.++|+.++...+|..+||.+.|.+.+..||...|+..+++.++ .++..+..++.
T Consensus 133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 197 (1140)
T PRK06814 133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT 197 (1140)
T ss_pred hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence 999999999999999999999999999999999999988988777333333333 33333444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=102.59 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=89.8
Q ss_pred hhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHH-HH---HHhhHH
Q psy3209 136 PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLL-TI---FAQSSY 211 (567)
Q Consensus 136 ~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~~~~ 211 (567)
.....|.+.++ .+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+. .. ..+++.
T Consensus 257 ~~~~~p~~l~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (434)
T PRK15075 257 ITVYTPTFGKT----VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFA 332 (434)
T ss_pred HHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 33445555432 16888888999998999999999999999999999999888765544332221 11 123344
Q ss_pred HHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh
Q psy3209 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPYI 269 (567)
Q Consensus 212 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l 269 (567)
.+.+..++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+.+.+
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 333 RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 44455566666666666666788999999999999999854 44444455566666554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=103.45 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=108.9
Q ss_pred ccCChhhHHHHHH-HHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHHHHHhccccc
Q psy3209 152 FELDAEKVSWVVA-TMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLT---IFA-QSSYWLFTSRLLSGIGKGV 226 (567)
Q Consensus 152 ~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~R~l~G~~~g~ 226 (567)
+|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++.+..|.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 8999999999974 6668999999999999999999988877666655544332 232 3455555556665555555
Q ss_pred cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3209 227 GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFIPET 295 (567)
Q Consensus 227 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~lpes 295 (567)
..+...++..+..+++.+++..++.+....+|.++++.+.+.+ ||+..|.+.++++++.++...+++++
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566678888999999999999999988888887766666655 89999998888887765555555544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-08 Score=98.24 Aligned_cols=179 Identities=15% Similarity=0.006 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHh----hhcchHHHHHH-HHHHHH
Q psy3209 359 IVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVD----IAGRKTLNMLS-AFLSSG 432 (567)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~-~~~~~~ 432 (567)
......+..++ ++.....+.+.|++..+.. ...+.......+..++..++.|+++| |+|||+.++.+ .+...+
T Consensus 8 ~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 8 RVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 33333333343 3455667777788776654 44556667777889999999999999 59999988765 444444
Q ss_pred HHHHHHHHHHhh----------hhh---HHHHHHHHHHHHHhhccccchhhhhcccCCChhhH--HHHHHHHHHHHHHHH
Q psy3209 433 VMIVLAACFYWN----------FDY---WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVK--SSAASIASIAFALAS 497 (567)
Q Consensus 433 ~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~ 497 (567)
++.++.+..... ... +..++...+..++......|. .+++.|.+|+++| +.+.++.+...++|+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 444444311100 001 222333333344444444555 4899999998865 679999999999999
Q ss_pred HHHHHHHHHH--HHhh-------------ccchhhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 498 FLINKFYKIV--QINF-------------GLYYMFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 498 ~i~~~i~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
.+++.+.+.. .+.. +.+..|.+.+++.+++.++.++..+|..
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9999988764 2222 3456777877777888777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=97.64 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=141.3
Q ss_pred HHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHH
Q psy3209 116 AIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSL 195 (567)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 195 (567)
-+..++++-..+.++.+..+..... .-..+ +|++..+..++.....+..++|++++|+|.||+|.|+++.++++
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~-fg~~~-----~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lv 326 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGV-FGAAD-----LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV 326 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH-HHHHH-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHH
Confidence 3445555555566665543332221 12234 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----h
Q psy3209 196 VFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----Q 270 (567)
Q Consensus 196 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~ 270 (567)
+..+.++..-+...-..+.++-.+.|.+.|+.+..+-++.++..|+++-++.+|+++...-.+.++||.+-+.+ +
T Consensus 327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 99999999888888778888889999999999999999999999999999999999999999999999888776 4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCC
Q psy3209 271 YQTLNIILGVIPLVFFITFMFIPET 295 (567)
Q Consensus 271 wr~~f~~~~~~~~~~~~~~~~lpes 295 (567)
-|.-+....++..+.++..+.+|+.
T Consensus 407 ~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 407 SRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hhhHHHHHHHHHHhhHhhEEeecCC
Confidence 6777666666655556666666654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=96.96 Aligned_cols=135 Identities=7% Similarity=-0.091 Sum_probs=99.8
Q ss_pred HHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy3209 372 VSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVS 450 (567)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (567)
......+.|.+-++.+.+ .+.+.....+.++..++.++.|++.||+|||+.+..+..+..++.+++.... ...+.+..
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~a~~~~~l 120 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLF 120 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHH
Confidence 345556677764444443 5566778888899999999999999999999999999999888887653211 12345556
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ 508 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 508 (567)
++..++.+.+.+....... .++.+..|++++...+++.+....+|..++|.+.+.+.
T Consensus 121 l~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 121 LVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776554443 67778877776667899999999999999998876554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-08 Score=100.42 Aligned_cols=154 Identities=20% Similarity=0.283 Sum_probs=115.1
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy3209 378 YASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLF 457 (567)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (567)
-++.+..+.+......+......+...++.++.|+++|.+|||..++.+.++..++.++.+- ..+....+....+.
T Consensus 66 ~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at----A~~~~~~iag~~l~ 141 (599)
T PF06609_consen 66 ILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT----AQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc----CCcHHHHHHHHHHH
Confidence 34555566665566667777788889999999999999999999999999999988887665 23555666677777
Q ss_pred HHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
+++.+.. .+....++|..|.+.|..+.++.....-....++|.+...+....+|++.|++.++...++.+..+++++.
T Consensus 142 GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 142 GVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred HHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 7765432 33346689999999999888777765555555777777666667789999999988887777665555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=93.22 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=105.5
Q ss_pred hhhhhhhhccCC-ch-hHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy3209 378 YASTTLPEHHGL-IG-RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTS 455 (567)
Q Consensus 378 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (567)
..|.+..+.+.. .+ .+.....+..+.++..+.+|++.||+|.|+++..+.+..++..+++++. .+.....+.-+
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa----~Sl~~L~i~R~ 123 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG----TSVWHMQLMEV 123 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344444444433 44 5677778888999999999999999999999999998888888877772 24666667777
Q ss_pred HHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q psy3209 456 LFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYM 516 (567)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~ 516 (567)
++|++-+..+ .. +.++...+|+++|+++.|+.+....+|.++++.+.+. ....||+..
T Consensus 124 llGvaEA~~~-A~-~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 124 FYSVTMAARI-AY-SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHH-HH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 8888877766 44 5899999999999999999999999999999999998 556787643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-08 Score=97.51 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=104.5
Q ss_pred HHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh-----cchHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 375 ILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIA-----GRKTLN-MLSAFLSSGVMIVLAACFYWNFDY 447 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 447 (567)
+....|.++++.+.+ .+.+..... .+...+ .++.|+++||+ |||+.+ +.+.++.++....+.+.. ...+.
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-~~~~l 83 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-PSTDL 83 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-cchhH
Confidence 445667777777654 333333222 333333 88999999998 788864 455555555544443311 11222
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cchhhhH
Q psy3209 448 WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG--------LYYMFAF 519 (567)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--------~~~~~~~ 519 (567)
+......++.+.+.+. ..+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+....| |+..|++
T Consensus 84 ~~l~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 84 PLLAGLAFLIAFFSAT-QDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 3333333333433333 344445889999999999999999999999999999999999988888 8888988
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy3209 520 YAICSGINVLFTFFFIFET 538 (567)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~ 538 (567)
.++..++..+..++..+|.
T Consensus 163 ~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 8887776655544445554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=97.02 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=105.9
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHh--hhhh
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFDY 447 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 447 (567)
..+.+..+.+.+..+.+.+ .+.+..... +.....+.++.|++.||+|+|+++.++.++..++.+++++.... ..+.
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 3455666677665555443 222333222 22223455678999999999999999999999998877763211 1244
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH
Q psy3209 448 WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGIN 527 (567)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 527 (567)
+...+..++.+.+.+...... ...+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++.
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 555555556665554433333 356778887 789999999999999999865555444433 24556777777777776
Q ss_pred HHHHHHhccCC
Q psy3209 528 VLFTFFFIFET 538 (567)
Q Consensus 528 ~~~~~~~~~~~ 538 (567)
.++.+.+.+..
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 66666665443
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.7e-09 Score=104.85 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=143.4
Q ss_pred hHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc--hhHHHHHHHHHHHHHHH
Q psy3209 125 PIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG--RKNTLLLTSLVFLTSSL 202 (567)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~ 202 (567)
+..+..+...+....+|...++ .+.++.+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~-----~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKS-----LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 3333444445555667777777 9999999999999999999999999999999988 56778889999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHH
Q psy3209 203 LTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNII 277 (567)
Q Consensus 203 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~ 277 (567)
.++++++++.++..-.+.|+..|........++.|+.+.++-..+.|+.....+++.++||++.+.+ +|...|+.
T Consensus 381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 9999999999999999999999998888888999999999999999999999999999999999877 59999999
Q ss_pred HHHHHHHHHHHhhccc
Q psy3209 278 LGVIPLVFFITFMFIP 293 (567)
Q Consensus 278 ~~~~~~~~~~~~~~lp 293 (567)
.++..++....+++.|
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9988887766666665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=98.91 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=95.3
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcccccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ--SSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~ 229 (567)
+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 565555555555555677888999999999999999999999999888888777754 677777788899999999999
Q ss_pred chhhhhhcccCCC-------cchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 230 VVPMYIAEITDKE-------IRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 230 ~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
...++..|..+.+ ++|..+++.+....+|..+++.+.+.+
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888653 358889999988888888887776654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=96.86 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=114.4
Q ss_pred HhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhh-----cchH-HHHHHHHHHHHHHHHHHHH
Q psy3209 368 RLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIA-----GRKT-LNMLSAFLSSGVMIVLAAC 440 (567)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~-~~~~~~~~~~~~~~~~~~~ 440 (567)
+.........-+|.++++.+.+ .+.+........ .+..++.|+++||+ |||+ .+..+.++.+++...+...
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 3345566778899999998866 444444333222 68889999999999 7765 5666666666666655442
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhH
Q psy3209 441 FYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN-FGLYYMFAF 519 (567)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~ 519 (567)
. ...+.+...+..++.+++.+. ..+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+. .||+..|++
T Consensus 89 ~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 89 P-PHAALWPLAGLAVLVAFLSAS-QDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred C-ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 1 112334334343444444433 4455568999999999999999999998999999999999888885 489999988
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy3209 520 YAICSGINVLFTFFFIFET 538 (567)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~ 538 (567)
.+++.++..+. .+..+|+
T Consensus 167 ~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 167 MAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHHHHHHHH-HHhcCCC
Confidence 88776665443 3445554
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-09 Score=102.01 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=97.0
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhc----ccchhHHHHH-HHHHHHHHHHHHHHHhhH----------------
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMD----KFGRKNTLLL-TSLVFLTSSLLTIFAQSS---------------- 210 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~---------------- 210 (567)
+|++....+.+--+..+...+.+++.|..+| ||||||.++. +..+.+++.++.+++.++
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 7888888888888888888999999999999 5898776655 566667777777777653
Q ss_pred -HHHHHHHHHHhccccccccchhhhhhcccCCCcchh-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy3209 211 -YWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGGILFSLCVGPYIQYQT 273 (567)
Q Consensus 211 -~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~i~~~l~~~l~wr~ 273 (567)
..++++-.+.-++.-.....+-+++.|...+.++.+ +++++..+.++|..+|..++++.+|+-
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 344445555556666777888899999998777766 999999999999999999998887653
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-08 Score=92.99 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=98.3
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
+|.++.+.++..+.+..+..+|.++.+++.||+|+|+++.++..+..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888888888766666554333 345568899999999999
Q ss_pred hhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHH
Q psy3209 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIIL 278 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~ 278 (567)
.+...+..|++ .+.+.++. ....+|..+.|.+.+.+ |.+..|++.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 99998888754 45666665 45557778888766655 566666643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=93.13 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=123.4
Q ss_pred hhhhccchhhhhhhhhhcccCCCccCCh--hhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q psy3209 129 VGCWLTWPSVALYKWQTKEYVLPFELDA--EKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF 206 (567)
Q Consensus 129 ~~~~~~~~~~~l~~i~~~~~~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 206 (567)
..++........+.+..+ ++.+. ...++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 14 LGLDLGLLSPALPLLLST-----LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHhcchHHHHHHHHHHH-----cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 336666667777777777 66555 57899999999999999999999999999999988888877777777877
Q ss_pred Hhh--HHHHHHHHHHHhccccccccchhhhhhcccCC-CcchhHHHHHHH-HHHHHHHHHHHhhhhh------hhHHHHH
Q psy3209 207 AQS--SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDK-EIRGTLSTMFTG-HLYGGILFSLCVGPYI------QYQTLNI 276 (567)
Q Consensus 207 ~~~--~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~G~~i~~~l~~~l------~wr~~f~ 276 (567)
..+ .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|.++++.++..+ +||+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 776 89999999999999999999999999999987 678888888887 5778888888666654 6888666
Q ss_pred HHHHHHHH
Q psy3209 277 ILGVIPLV 284 (567)
Q Consensus 277 ~~~~~~~~ 284 (567)
+.......
T Consensus 169 ~~~~~~~~ 176 (338)
T COG0477 169 LAALLGLL 176 (338)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=94.98 Aligned_cols=145 Identities=14% Similarity=0.214 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
.+.+........+.+++.+.+|++.||+|.|+++..+.++.+++.++..+... .+.+..++.-++-|++.+..+..+.
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~--~~~~~~~~~R~lqGl~~g~~~pa~~ 150 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS--IGFYLLLVLRFLQGLGQGVLFPAIG 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHhHHHHhHHHhhhh
Confidence 34557778888999999999999999999999999999999998888887543 2334556666777777777665554
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN-FGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
.+...-.|+++|++..++.....++|.+++-.+.|.+.+. .||+.+|++.++++++..++.+++..+
T Consensus 151 -~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 151 -SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred -ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999998 999999999999998887776666553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-06 Score=89.40 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=111.9
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHhc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLLLTSLVFLTSSLLTIFAQS--------SYWLFTSRLLSGI 222 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~R~l~G~ 222 (567)
+|.+......+...+....-+.++++|+++|+ +||++.++++.++..+|.++.+++.. ...++++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999995 69999999999999999988877521 2346677888899
Q ss_pred cccccccchhhhhhcccCCCc---chhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHHHHH
Q psy3209 223 GKGVGFTVVPMYIAEITDKEI---RGTLSTMFTGHLYGGILFSLCVGPYI-----------QYQTLNIILGVIPLVFFIT 288 (567)
Q Consensus 223 ~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l-----------~wr~~f~~~~~~~~~~~~~ 288 (567)
|.|+.-|...+...|-+++++ |.....++..+.++|.++++.+.+++ +|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999997653 55667777788888888887776655 3888888887777664444
Q ss_pred h
Q psy3209 289 F 289 (567)
Q Consensus 289 ~ 289 (567)
+
T Consensus 178 f 178 (654)
T TIGR00926 178 F 178 (654)
T ss_pred H
Confidence 3
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-07 Score=92.92 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=121.4
Q ss_pred hhhccchhhhhhhhhhcccCCCcc-CChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH-
Q psy3209 130 GCWLTWPSVALYKWQTKEYVLPFE-LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA- 207 (567)
Q Consensus 130 ~~~~~~~~~~l~~i~~~~~~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~- 207 (567)
+...+......+...++ .| .+....+.+.++..++-...-...+++..|+|.|++++++.+.+++=..+.++.
T Consensus 220 ~~~~~~~~~f~~~yl~~-----~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~ 294 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQE-----LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS 294 (400)
T ss_pred HHHHHHHHHHHHHHHHH-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333344444455 66 667777887788888888999999999999999999999999999998888887
Q ss_pred hhHHHHHH----HHHHHhccccccccchhhhhhcccCCCcchhHHHHHHH-HHHHHHHHHHHhhhhh----------hhH
Q psy3209 208 QSSYWLFT----SRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTG-HLYGGILFSLCVGPYI----------QYQ 272 (567)
Q Consensus 208 ~~~~~l~~----~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l----------~wr 272 (567)
++.+...+ ...++|+..+..+..+..++.+..|++.|+++.++++. ..++|..+|..+++.+ .|.
T Consensus 295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~ 374 (400)
T PF03825_consen 295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWS 374 (400)
T ss_pred CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 45444333 34579999999999999999999999999999999875 5688999999888886 355
Q ss_pred HHHHHHHHHHHHHH-HHhhcccCC
Q psy3209 273 TLNIILGVIPLVFF-ITFMFIPET 295 (567)
Q Consensus 273 ~~f~~~~~~~~~~~-~~~~~lpes 295 (567)
..+.+.+.+.++.. +.+++.+|+
T Consensus 375 ~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 375 AVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Confidence 56666666665533 333444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-07 Score=86.06 Aligned_cols=130 Identities=16% Similarity=0.238 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhccc
Q psy3209 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEIT 239 (567)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 239 (567)
+.+.-+-.+-..+.-+.+.+..+|+.-+.=..+..+++.++.++.+++++.+.-+++-++.+++.|........+. ..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-Hhc
Confidence 3444445555666666777888888755555666778888999999999999989999999999988877777764 455
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhc-ccC
Q psy3209 240 DKEIRGTLSTMFTGHLYGGILFSLCVGPYI-----QYQTLNIILGVIPLVFFITFMF-IPE 294 (567)
Q Consensus 240 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~-lpe 294 (567)
++ ...+-+..+.+.+.++|+..-..+ +-|..+.+..++.++..+.+++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54 345666666666666666544333 3477777777777665555444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=88.00 Aligned_cols=341 Identities=14% Similarity=0.104 Sum_probs=177.3
Q ss_pred CccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccc
Q psy3209 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230 (567)
Q Consensus 151 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~ 230 (567)
.++..+.+++.+.-+.+-...+...+.|.|+|+-|||+.-+.-++.+.+++ +.-.++.|-.++++|.+-|++.+..+.+
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 378889999998888888888899999999999999996554444333332 2334678889999999999999988877
Q ss_pred hhhh-hhcccCCCcchhHHHHHH--------HHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHH-HHHHhhcccC
Q psy3209 231 VPMY-IAEITDKEIRGTLSTMFT--------GHLYGGILFSLCVGPYI------QYQTLNIILGVIPLV-FFITFMFIPE 294 (567)
Q Consensus 231 ~~~~-i~e~~~~~~r~~~~~~~~--------~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~-~~~~~~~lpe 294 (567)
--++ +.|--. +|+.-.-+.. .+..+=.+++++.+..+ |--.+|-..+.+..+ ..++.--.-|
T Consensus 145 FEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~E 222 (454)
T KOG4332|consen 145 FESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSE 222 (454)
T ss_pred HHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhh
Confidence 6654 455442 3332222221 22222334444444443 223444433333222 2222111111
Q ss_pred CchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHH
Q psy3209 295 TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVST 374 (567)
Q Consensus 295 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (567)
. -++..+.+..+... +...+.+..+. ++.+.-.+...+....+..
T Consensus 223 N-------ygdps~~kdlltqf------------------------~gaa~aiaSD~----ki~LLG~iqsLFE~smytF 267 (454)
T KOG4332|consen 223 N-------YGDPSENKDLLTQF------------------------KGAARAIASDE----KIALLGAIQSLFEGSMYTF 267 (454)
T ss_pred c-------cCChhhhHHHHHHh------------------------hHhHHHHhcch----HHHHHHHHHHHHhhhhhee
Confidence 1 11111111111100 11112222221 1222222333333333333
Q ss_pred HHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhHHHHHhhhcch--HHHHHHHHHHHHHHHHHHHHHHhh---hhhHH
Q psy3209 375 ILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRK--TLNMLSAFLSSGVMIVLAACFYWN---FDYWV 449 (567)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 449 (567)
+..|.|..-.+.. ...-+.++.-+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+........ .+...
T Consensus 268 VFLWTPaLspn~e-~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~ 346 (454)
T KOG4332|consen 268 VFLWTPALSPNDE-EIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSE 346 (454)
T ss_pred eeeecccCCCCcc-cCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchH
Confidence 4445554322211 13445666667777778877777766554333 445555555555444443332211 23445
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
.++..+++-.+.+..+.++. -+-....|.+.|++.+-+...--++...++-+.--.-....+.+..|.++..+..++.+
T Consensus 347 s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 347 SLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 56677777777777666665 67788889998887766554433443333322110000122444667777766666654
Q ss_pred HH
Q psy3209 530 FT 531 (567)
Q Consensus 530 ~~ 531 (567)
..
T Consensus 426 ~~ 427 (454)
T KOG4332|consen 426 LQ 427 (454)
T ss_pred HH
Confidence 43
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-05 Score=75.63 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHHHHHHhh-hhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH----h---------------------
Q psy3209 155 DAEKVSWVVATMDLGNILS-PIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA----Q--------------------- 208 (567)
Q Consensus 155 s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~--------------------- 208 (567)
....+.++-+...+..++. .++.+++++|++|++++-+....+.+..++.++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467899999888877776 8899999999999999998888887777776664 1
Q ss_pred ------hHHHHHHHHHHHhcccccccc-chhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 209 ------SSYWLFTSRLLSGIGKGVGFT-VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 209 ------~~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
+.|...+.-+...+......+ .-..++.|.+..++-.|..+++..+.++|.++++.+..++
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555555 6678899999999999999999999999999999887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=104.11 Aligned_cols=175 Identities=10% Similarity=-0.045 Sum_probs=117.7
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q psy3209 361 LVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAA 439 (567)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 439 (567)
+.+..+.+......+..-.+.+-++.+.. .+.+.+...+.++.+++.++.+++.||.+||+.+.++.++.+++.+++++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 33334433322233333444444433333 45567777888899999999999999999999999999999999888766
Q ss_pred HHHhh----------------------------------------------h-hhHHHHHHHHHHHHHhhccccchhhhh
Q psy3209 440 CFYWN----------------------------------------------F-DYWVSYLFTSLFGITYSLGIGIIPTTL 472 (567)
Q Consensus 440 ~~~~~----------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (567)
..... . .....++.-++.|++.+. ..+...++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~ 196 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISY 196 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchh
Confidence 32100 0 112233444555555554 34445589
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------ccchhhhHHHHHHHHHHHH
Q psy3209 473 LSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF----------------------GLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 473 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~ 530 (567)
+.|.+|+++|+...|+.+....+|..+|+.+.+.+.+.. +|+..|++.+++.++.++.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887643 1445576666666665544
Q ss_pred HHHhccC
Q psy3209 531 TFFFIFE 537 (567)
Q Consensus 531 ~~~~~~~ 537 (567)
. ++.++
T Consensus 277 l-~~~p~ 282 (633)
T TIGR00805 277 F-FFFPK 282 (633)
T ss_pred H-HhCcc
Confidence 3 34444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=92.14 Aligned_cols=143 Identities=19% Similarity=0.230 Sum_probs=118.5
Q ss_pred cCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchh
Q psy3209 153 ELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVP 232 (567)
Q Consensus 153 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 232 (567)
+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH-HHHHhhcccCC
Q psy3209 233 MYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV-FFITFMFIPET 295 (567)
Q Consensus 233 ~~i~e~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~-~~~~~~~lpes 295 (567)
.|+++.+|++..++...+. +.+..+|.++.+.+++.+ |.+..|++.+.+.++ .++..+.+++.
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999988877777764 677888888777777766 888899888887776 44555555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=94.66 Aligned_cols=126 Identities=15% Similarity=0.079 Sum_probs=99.9
Q ss_pred hhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3209 138 VALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-GRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTS 216 (567)
Q Consensus 138 ~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 216 (567)
..+|.+.++ .|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+.++..+.+++.++..+.++..... .
T Consensus 218 ~~lp~~~~~-----~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 291 (355)
T TIGR00896 218 GWLPAILIS-----HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W 291 (355)
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 446766677 789999999999999999999999999999999 567777888888888887777765433322 4
Q ss_pred HHHHhccccccccchhhhhhcccC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 217 RLLSGIGKGVGFTVVPMYIAEITD-KEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 217 R~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
-++.|++.+..++.....+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999888887777665554 56678888888888888888888777765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=93.58 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=108.8
Q ss_pred hhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q psy3209 129 VGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ 208 (567)
Q Consensus 129 ~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 208 (567)
..+.....+...+...++ .++.+ ...+++..+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+
T Consensus 237 ~~~~~~~~~~~~~y~~~~----vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTY----VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHhhhhhhhhHHHHHHHH----HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 333444444444544444 13333 6678888899999999999999999999999999999999999999999887
Q ss_pred --hHHHHHHHHHHHhccccccccchhhhhhcccCC-------CcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 209 --SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDK-------EIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 209 --~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
|.+.+++.-++.|++.+...+...++++|..+. ++.|...++.+...-+|..+++.+.+.+
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998863 3347888888877777777777665544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-10 Score=116.84 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=96.2
Q ss_pred hhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH--H---Hhh----
Q psy3209 139 ALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI--F---AQS---- 209 (567)
Q Consensus 139 ~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~~---- 209 (567)
..+.+.+. .+.+.. -+......+...++.++..++.||+|||++++++.++.+++.+..+ . .++
T Consensus 275 ~~~~i~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 275 YSPSIFEN-----AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred cccccccc-----cccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445544 565555 2222233345556777777999999999999999999888887775 1 111
Q ss_pred -HHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHH
Q psy3209 210 -SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLV 284 (567)
Q Consensus 210 -~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~ 284 (567)
+..+............+..+....+..|.+|.+.|++..++......++.++++.+...+ +-...+++.+.++++
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i 427 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI 427 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence 222222222111112233466678889999999999999999988888887777766554 213344444544444
Q ss_pred -HHHHhhcccCCc
Q psy3209 285 -FFITFMFIPETP 296 (567)
Q Consensus 285 -~~~~~~~lpesp 296 (567)
.++.++++|||.
T Consensus 428 ~~i~~~~~lpET~ 440 (451)
T PF00083_consen 428 AIIFVYFFLPETK 440 (451)
T ss_pred HHhheeEEEeeCC
Confidence 566778899983
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-07 Score=92.44 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=89.6
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHhcccccccc
Q psy3209 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF-----AQSSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 155 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~ 229 (567)
+....+++.+...++..++.+++++++||+|+|+.++++..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655443 34566777778889999999888
Q ss_pred chhhhhhcccC-------CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 230 VVPMYIAEITD-------KEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 230 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
...++++|..+ .++.|..+++.....-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999865 33346678888877777777777666554
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=96.91 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhh
Q psy3209 391 GRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPT 470 (567)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (567)
.......++.++.++|.++.|.++||+|||++++.+.++..++.+..++ ..+.+...+.-++.|++.+.. ..+.+
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----a~~~~~~~~~Rfl~G~~~~~~-~~~~~ 193 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----APNYWMFLIFRFLSGFFGSGP-LTVGF 193 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhccch-hHHhH
Confidence 3446667778899999999999999999999999999998888866655 346666677777777776654 44446
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 471 TLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 471 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
.+..|.+++++|+.+..+ ......++.+++...+++.. +|++.+++..+..++..++ +++.+|.
T Consensus 194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 899999999999999999 88888889899999888877 7888888888777766555 3444454
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.6e-07 Score=90.81 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhccccccccchhh
Q psy3209 156 AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF--AQSSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 156 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
+...+.+.....++..++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888889999999999999999999888776654443333 346777888889999999999999999
Q ss_pred hhhcccCC-------CcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 234 YIAEITDK-------EIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 234 ~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
+++|..+. +..|...+..+....+|..+|+.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988752 2346677888777788888887776654
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.4e-07 Score=92.09 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhh
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTL 472 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (567)
++......++..++.++.|+++|++|||+.++++.++..++.++.+... +....+++-++.|++.+......+ .+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~p-iy 166 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAP-VY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcch-hh
Confidence 5778888899999999999999999999999999999999988887732 677777788888888877666665 89
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhhhHHHHHHHHHHHHHHHhccCC
Q psy3209 473 LSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF--GLYYMFAFYAICSGINVLFTFFFIFET 538 (567)
Q Consensus 473 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (567)
.+|..|++.||...+.......+|..++ ++.+....+. +|+..+.+..+.+++..+. .++.||.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 9999999999999999999988777777 5556655543 7886777666666666555 5666654
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00015 Score=72.17 Aligned_cols=364 Identities=12% Similarity=0.010 Sum_probs=170.7
Q ss_pred hhHHHhhhhccchhhhhhhhhhcccCCCcc-CChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q psy3209 124 LPIFIVGCWLTWPSVALYKWQTKEYVLPFE-LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSL 202 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 202 (567)
.+.++............|.+..+ .. -+---.+...-.-.+...++++..|.+.||..|.+++..++++.-++..
T Consensus 9 ~sh~ls~w~dR~w~Fa~~L~L~~-----i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 9 LSHFLSTWGDRMWEFAVPLFLIS-----IFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 34444444444444444444444 21 1222233334444556677888889999999999998887766544443
Q ss_pred HHHHH------h---------hHHHHHHHHHHHhccccccc-cchhhhhhcccC------CCcchhHHHHHHHHHHHHHH
Q psy3209 203 LTIFA------Q---------SSYWLFTSRLLSGIGKGVGF-TVVPMYIAEITD------KEIRGTLSTMFTGHLYGGIL 260 (567)
Q Consensus 203 ~~~~~------~---------~~~~l~~~R~l~G~~~g~~~-~~~~~~i~e~~~------~~~r~~~~~~~~~~~~~G~~ 260 (567)
+++.. . -...+++.-.+.|.-.-... ....++=.||.. +..+.+..+...-.=.+.-+
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 33221 0 11112222222222111111 111122234432 33445555555544455556
Q ss_pred HHHHhhhhh----hhHHHHHHHHHHHHHH-HHHhhc----ccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHH
Q psy3209 261 FSLCVGPYI----QYQTLNIILGVIPLVF-FITFMF----IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV 331 (567)
Q Consensus 261 i~~~l~~~l----~wr~~f~~~~~~~~~~-~~~~~~----lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (567)
++|++.+.+ +.+...++.+...++. .+=+++ ....|.-. .++...++....... ...+....... ..
T Consensus 164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~-~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ 239 (432)
T PF06963_consen 164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALA-VKKRSSESESSSDEE-SSSESSSDPSI--LK 239 (432)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhc-CCCCCcccccccccc-ccccccchhhH--HH
Confidence 666665555 5666666655555542 221221 13333211 111111100000000 00000000000 00
Q ss_pred HHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhH
Q psy3209 332 LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFAC 410 (567)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 410 (567)
...+.-......++..++.+.+.... ...++++ . ...+-..+..|+...+.. ...+..=....+.++.+.++.
T Consensus 240 ~~~~~~~~~~~~w~~Y~~q~vflas~-alalLY~-T----VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 240 RLWNPLRTIIRGWRTYFRQPVFLASF-ALALLYF-T----VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred HHHHHHHHHhccHHHHHhCHHHHHHH-HHHHHHH-H----HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111234556666654333221 1111111 1 122234445566666544 333445556667788999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHH
Q psy3209 411 SPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDY------WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSS 484 (567)
Q Consensus 411 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 484 (567)
.++.+|+|..+.-.++......++.+.........+. ...+..+++.-+|. .++-.....++.|.+|+++||.
T Consensus 314 p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 314 PWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhH
Confidence 9999999998877777666555444433322222211 11111111111111 1122223467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3209 485 AASIASIAFALASFLINKF 503 (567)
Q Consensus 485 ~~g~~~~~~~~g~~i~~~i 503 (567)
..|+-+...++...+.-.+
T Consensus 393 v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 393 VSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888877665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=88.96 Aligned_cols=146 Identities=15% Similarity=0.063 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
.+-+.....+.++.+++.+.++.+.||++..+.+....++.++..++-.. .++.+..++.-++.|++-+.++.+..
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----~~s~~~~ialr~llGl~es~~wP~~~ 156 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----VHSFPGLIALRFLLGLFESGGWPGVV 156 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhcccchHHH
Confidence 34456777888999999999999999999555544444333333222222 34667777778888888888777775
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ------INFGLYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
.++...|.+++|+..+|+.++...+|+++|+++...+. ...||++.|++-+++.++..+++++++|+...
T Consensus 157 -~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 157 -AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred -HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 89999999999999999999999999999999987764 34689999999999999999888888876543
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=81.54 Aligned_cols=359 Identities=13% Similarity=0.102 Sum_probs=207.7
Q ss_pred ccCChhhHH-HHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccc
Q psy3209 152 FELDAEKVS-WVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230 (567)
Q Consensus 152 ~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~ 230 (567)
.|++..+.. =+.-.-.-.+.+.-++.=.+.|..--|+++++-.+...+..++..+.++.+.+=+.-++.|...+. ..+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHh
Confidence 566666553 122233344555666666889988889999988888888888888999999998999999998775 467
Q ss_pred hhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcC
Q psy3209 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI------QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDN 304 (567)
Q Consensus 231 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~ 304 (567)
-++++-+..+++++.++.+...+....|-..|..++..+ ++...-++......+..+..+++|..+|-. .-+.
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl-~f~~ 193 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL-YFHR 193 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh-hhhc
Confidence 788999999999999999999999999999888888876 334443443333333455556677655433 1111
Q ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh
Q psy3209 305 NQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLP 384 (567)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (567)
+.++ .........+. ..+..+. ....-..-..++.+..++|...... ++.....++++-+..|....-.
T Consensus 194 ~~~~--~~v~~~e~~~~--~~~~~~~--l~~~~~~l~~~l~~~y~np~ll~WS-----lWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 194 LEDK--ISVGDLEEMNP--QASYMSY--LRGAFVLLWRDLQECYSNPRLLKWS-----LWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred cccc--ceeccchhcCc--cchhhHH--HHHHHHHHHHHHHHHhcCchhhhhH-----HHHHHhhchhHHHHHHHHHHHH
Confidence 1111 00000000000 0000000 0000011122344555555444333 3333334455666666666655
Q ss_pred hccCC---chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy3209 385 EHHGL---IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNM--LSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGI 459 (567)
Q Consensus 385 ~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (567)
+.... .-.+..=....+.++++.+..|.+.-+..|..-++ ++.+..+...+++ ....+.|...+...++..
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m----~~t~~Iw~~Ya~yvlfr~ 338 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM----AQTQHIWVCYAGYVLFRV 338 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh----hcccceehhhhhHHHHHh
Confidence 55321 11223334455667788888888876666653333 2222222222222 234567888888888888
Q ss_pred HhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cchhhhHHHHHHHHHH
Q psy3209 460 TYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG-----------LYYMFAFYAICSGINV 528 (567)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-----------~~~~~~~~~~~~~~~~ 528 (567)
.+.+...... ..+++....+.-|..+|++.++.-+-..+-..++ .|..| +..-|.+.+++.+++.
T Consensus 339 ~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~ 414 (433)
T KOG3810|consen 339 IYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGF 414 (433)
T ss_pred hHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHH
Confidence 8877655554 3444444667788899988877666655544442 33222 2234666666666665
Q ss_pred HHH
Q psy3209 529 LFT 531 (567)
Q Consensus 529 ~~~ 531 (567)
...
T Consensus 415 ~~~ 417 (433)
T KOG3810|consen 415 GIE 417 (433)
T ss_pred HHH
Confidence 543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-07 Score=66.35 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=74.2
Q ss_pred hhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q psy3209 129 VGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ 208 (567)
Q Consensus 129 ~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 208 (567)
.|..+..++|.+|.+++| .++|..+.+++.+..++||.+|.+...++.++..+++.+..++++..+..+.+++.+
T Consensus 4 mGigRFayTplLP~M~~~-----~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQAD-----GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hhhHHHHHHhHhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666789999999999 999999999999999999999999999999998999999999999999999999998
Q ss_pred hHHHHH
Q psy3209 209 SSYWLF 214 (567)
Q Consensus 209 ~~~~l~ 214 (567)
+++...
T Consensus 79 ~~~~w~ 84 (85)
T PF06779_consen 79 SFWLWS 84 (85)
T ss_pred chHHHh
Confidence 877643
|
Note that many members are hypothetical proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-06 Score=79.10 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=129.8
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-c
Q psy3209 107 RQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-G 185 (567)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-G 185 (567)
...|+....|.+.+...+-.+..+... .=+|.+..| -|+|..+.|++.+...+.....++....+.+|. .
T Consensus 202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~----~WLP~ili~-----~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n 272 (395)
T COG2807 202 RKVWRSPLAWQVTLFMGLQSLLYYIVI----GWLPAILID-----RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN 272 (395)
T ss_pred cccccCchhHHHHHHHHhhHHHHHHHH----HHHHHHHHH-----cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555666766666555555554433 336777778 899999999999999999999999999999965 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCC-CcchhHHHHHHHHHHHHHHHHHH
Q psy3209 186 RKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDK-EIRGTLSTMFTGHLYGGILFSLC 264 (567)
Q Consensus 186 rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~i~~~ 264 (567)
+|+..+....++.++.+.+.+.+.-..+.- -++.|+|.|..++.+...+.+-.+. ++-+...++.+....+=..+||.
T Consensus 273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 788888888889999988888876444444 4999999999999999999887754 34455566666555555566788
Q ss_pred hhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy3209 265 VGPYI-----QYQTLNIILGVIPLVFFIT 288 (567)
Q Consensus 265 l~~~l-----~wr~~f~~~~~~~~~~~~~ 288 (567)
+.+++ +|+...+..+...+...+.
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 88777 7999888877777664433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.1e-07 Score=87.27 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhh
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTT 471 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (567)
......++...-+..+++||++||+ |+|+.+..+.+++.++.+++.... .......++.+.+.+++.+. +=+....
T Consensus 64 ~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--~~~~~gl~i~L~~I~iG~Gl-~K~NiS~ 140 (498)
T COG3104 64 TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--VSGPGGLYIGLALIIVGTGL-FKPNISS 140 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--cccccHHHHHHHHHHhcccc-ccccHHH
Confidence 3444445555567888999999996 999999999999999999888731 01344455556666666665 4444458
Q ss_pred hcccCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhc
Q psy3209 472 LLSELFPTN--VKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFI 535 (567)
Q Consensus 472 ~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (567)
++.|++|++ +|-.+.++..+..++|+.++|.+.+++.+..||...|...++-..++.+..++..
T Consensus 141 llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 141 LLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889998754 4677788888888999999999999999999999888888887777766654443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=85.14 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=119.0
Q ss_pred HHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHH--------HHHH-HHHHHHhhhhhhhhhhcccchh
Q psy3209 117 IAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSW--------VVAT-MDLGNILSPIPSGYIMDKFGRK 187 (567)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~--------~~s~-~~~~~~~~~~~~g~l~dr~Grr 187 (567)
..++..+...|+......-.+.....+.+. +++.+..... ...+ ...++..|-.+...+.|+.|||
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~-----ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk 378 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-----IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK 378 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHh-----hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH
Confidence 455566666666555444444445555554 4443332222 1111 2233344666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHH
Q psy3209 188 NTLLLTSLVFLTSSLLTIFAQS--------SYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI 259 (567)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 259 (567)
++.+.+.+++++..+..++..| .....+..++.-+|-+ .....+-+|.+|.+-|+..-++..+..-+|.
T Consensus 379 ~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GA 455 (538)
T KOG0252|consen 379 YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGA 455 (538)
T ss_pred HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchH
Confidence 9999999999999999998877 1223333444444432 3445667899999999999999999888888
Q ss_pred HHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHhhcccCCc
Q psy3209 260 LFSLCVGPYI---------QYQTLNIILGVIPLVFFITFMFIPETP 296 (567)
Q Consensus 260 ~i~~~l~~~l---------~wr~~f~~~~~~~~~~~~~~~~lpesp 296 (567)
+++...-..+ +.|+.|++.+.+.++..+..+++|||.
T Consensus 456 ivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 456 IVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 8887654443 689999999999988888888999984
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=76.08 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=106.2
Q ss_pred CccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHhcccccccc
Q psy3209 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS-SLLTIFAQSSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 151 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 229 (567)
.||.|+...+.+.+....-.++.+++.|.++||+|++...+.+..+..+. -.+..| +++.=..+..+.|++.+....
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHH
Confidence 49999999999999998999999999999999999998877765554443 344433 334445667788998877666
Q ss_pred chhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-------hh-HHHHHHHHHHHHHHHHHhhcc
Q psy3209 230 VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-------QY-QTLNIILGVIPLVFFITFMFI 292 (567)
Q Consensus 230 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l-------~w-r~~f~~~~~~~~~~~~~~~~l 292 (567)
.....++-..|+++.|++.+..+...++|..+.+++.+.+ .| +..|.+.+.+++....+.+.+
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6778888899999999999999999999999999999887 23 333444444455444444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-05 Score=77.19 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=94.0
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcccccccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ--SSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~ 229 (567)
+|-++....+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455666677788888888888899999999999999999999999999999998876 788889999999999999999
Q ss_pred chhhhhhcccCC-------CcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 230 VVPMYIAEITDK-------EIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 230 ~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
...++++|..+- +.-|...+......=+|..++..+.++
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877542 223666677666655666655544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=74.99 Aligned_cols=118 Identities=10% Similarity=-0.025 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
.+++.....+..+..+.++..+++.+|+|+|+-++.+..++++++.++.-... .......+...++.+.+.+..-...
T Consensus 48 ~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~-~~~y~~FL~~lFila~Gi~~Letaa- 125 (422)
T COG0738 48 FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS-SKSYGFFLVALFILASGIGLLETAA- 125 (422)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhhhHHHHhcc-
Confidence 56778888888899999999999999999999999999999999888754221 2233444444555555555433333
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
..++..+.|++..+.-+.+...+..+|++++|.+.+.+..
T Consensus 126 Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4788888888888889999999999999999999998876
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=89.51 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=104.4
Q ss_pred CccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHH
Q psy3209 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA----------QSSYWLFTSRLLS 220 (567)
Q Consensus 151 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~R~l~ 220 (567)
.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+. ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 389999999999999999999999999999999999999999999999988664321 3334555667889
Q ss_pred hccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 221 GIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 221 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
+++.+..+.....++.+..|++.+|...++.+...++|..+++.+++.+
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-07 Score=90.61 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=116.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+-.+...|.....-..|-.+.-++.+++.+|+|+-+++.+++.+..+=.+..++.+|.|+.+..-+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 66666667766677777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhh
Q psy3209 232 PMYIAEITDKEIRGTLSTMFT-GHLYGGILFSLCVGPY----IQYQTLNIILGVIPLVFFITFM 290 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~----l~wr~~f~~~~~~~~~~~~~~~ 290 (567)
.+|++...||+-|+.+.++++ ...++|--+|.++|+. ++-|..|.+.++.+++.++.+.
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 3344455555555544 4889999998888877554443
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-05 Score=72.26 Aligned_cols=136 Identities=15% Similarity=0.038 Sum_probs=88.2
Q ss_pred hhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhc-----ccchhHHHHH-HHH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMD-----KFGRKNTLLL-TSL 195 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~ 195 (567)
..+.+...|.-.+... .+|.+.+. -|+|-++.+...-++. --.--++|.++.| |+||||.-++ +..
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~a-----k~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQA-----KGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcC-----CCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 3355677888888888 88988876 6788777665432221 1123457888999 9999886544 444
Q ss_pred HHHHHHHHHHHH-----------hhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHH
Q psy3209 196 VFLTSSLLTIFA-----------QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLC 264 (567)
Q Consensus 196 ~~~i~~~~~~~~-----------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~ 264 (567)
+.+..+.+.+.. ++...+...-++.-+..+..-.+.-...-.+..+++-|.+......+...|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 444444444331 233334444455566666555666667777788888898888888888888877765
Q ss_pred h
Q psy3209 265 V 265 (567)
Q Consensus 265 l 265 (567)
+
T Consensus 188 i 188 (510)
T KOG3574|consen 188 V 188 (510)
T ss_pred e
Confidence 4
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.7e-06 Score=74.89 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=89.8
Q ss_pred hhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh---h
Q psy3209 370 SGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWN---F 445 (567)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 445 (567)
+..|.+..|.|..-...+.+ .+.........++..+ +++.|.+.|++|.+.++.++.+...++...+....... .
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~ 94 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL 94 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence 35567777888776665554 3334444445566554 58889999999999999999999999888776643221 1
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN 510 (567)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~ 510 (567)
+.|...+..++.+.+.+. +.........+.|| ++||++.|+.-....+++++-..+...+.+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~-~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCW-FNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred chHHHHHHHHHHcccHHH-hhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 223333222332222222 22222234557888 6799999999999999999888887666554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=79.08 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhccccccccchhh
Q psy3209 156 AEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ--SSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 156 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
+...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999999999999999999988766555555444443332 2333445556678877766666667
Q ss_pred hhhcccC-------CCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 234 YIAEITD-------KEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 234 ~i~e~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
+++|..+ .++.|...+......-+|..+++.+++.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655 2223555566555565666655555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0052 Score=62.52 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHH-HHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH--h-----------------------
Q psy3209 155 DAEKVSWVVATMDL-GNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA--Q----------------------- 208 (567)
Q Consensus 155 s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~----------------------- 208 (567)
.++.+..+-....+ +..+...+..+++++++|.+++-+.+..+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666554444 455667788999999999999988887777776666652 0
Q ss_pred ------hHHHHHHHHHHHhcccccccc-chhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 209 ------SSYWLFTSRLLSGIGKGVGFT-VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 209 ------~~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333333343333 3467889999999999999999999999999988776665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-05 Score=74.41 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcch-HHHHHHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHhhc
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDIAGRK-TLNMLSAFLSSGVMIVLAACFYW--------NFDYWVSYLFTSLFGITYSL 463 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 463 (567)
......+.++.++|+.+..+.. .-++| +.+.+..+.-.+..-++.++... -.+.+..++.++++++..+.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3556677888889988665431 11222 12333333333333232222111 12455566677777777765
Q ss_pred cccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFY 504 (567)
Q Consensus 464 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 504 (567)
. ......+..+.+++++|..+-.+...+-.+|-.+|+.+.
T Consensus 389 ~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 L-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred H-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334447788888889998888888888888888887663
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-05 Score=66.15 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=93.4
Q ss_pred CChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhh
Q psy3209 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233 (567)
Q Consensus 154 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 233 (567)
+++..--.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-.+.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 34433344556667777888888899999999999999999999855544 35667889999999999999999999999
Q ss_pred hhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 234 ~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
++.+...++.|++..+++......+.++|.++...
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777766544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.5e-05 Score=76.88 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCC
Q psy3209 399 FSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFP 478 (567)
Q Consensus 399 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 478 (567)
.++..++.+.+.|.++||+|||..+........+..+.+.+. .++.++...+.+ +++. .....++++++...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~------~~~~~~~~~l~g-~~~~-~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ------GYWFFLLLGLSG-GFSA-IFSVGFAYVADISS 142 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH------HHHHhhhccccc-chhh-hhhhhhhheeeccc
Confidence 367788899999999999999998888877777666665551 122222222222 2222 33444689999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHH
Q psy3209 479 TNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQ 544 (567)
Q Consensus 479 ~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (567)
.+.|....|+.+.....+..++|.+.+.+.+..|...+|.+..+..++..+...++.||+...+.+
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999988899887665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.4e-05 Score=71.53 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=110.1
Q ss_pred CccCChhhHHHHHHHHHHHHHhhhhhhhhhhc-ccchhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhccccc
Q psy3209 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMD-KFGRKNTLLLTSLVFLTSSLLTIF---AQSSYWLFTSRLLSGIGKGV 226 (567)
Q Consensus 151 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~R~l~G~~~g~ 226 (567)
-||++..+..-+......|..++-...|++.. |.+.++.-.+++.+..++..+..+ ..+.+.+...-++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 48999999999999999999999999998877 778888888888887777665444 45788899999999999999
Q ss_pred cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHHHHHHHH
Q psy3209 227 GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI--------------QYQTLNIILGVIPLV 284 (567)
Q Consensus 227 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l--------------~wr~~f~~~~~~~~~ 284 (567)
......+.+.+...+++.|..+|.+.....++.-++..+++.+ +|-.+|.+-++..++
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777777777776654 355566665555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=79.92 Aligned_cols=149 Identities=14% Similarity=0.035 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhccccchh
Q psy3209 392 RTECLIIFSVLLVVTNFACSPLVDIAGR-KTLNMLSAFLSSGVMIVLAACFYWNF-DYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
-++......++.+++.++.|+...|.++ |+.++.+.+++.++.++.....+... ..+..++.-++.|++ .+.....
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg--~~n~a~l 150 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG--VGNFAVL 150 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC--cccHHHH
Confidence 4566667788999999999999999886 78889999999999888755443333 344444444444444 3445555
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc-----------cchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN--FG-----------LYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~--~g-----------~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
-.|+++..-.+.|.++++..+....+|.++||.+...+..- .| +..+-|+.+++.++..++..++.+
T Consensus 151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 68888866667788888888777777777777765443311 01 335667788888888877777777
Q ss_pred CCCCCC
Q psy3209 537 ETKGKS 542 (567)
Q Consensus 537 ~~~~~~ 542 (567)
|..+..
T Consensus 231 E~~~~~ 236 (488)
T KOG2325|consen 231 EVYRGI 236 (488)
T ss_pred ecccCc
Confidence 754443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00033 Score=66.68 Aligned_cols=153 Identities=17% Similarity=0.062 Sum_probs=94.5
Q ss_pred hhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy3209 383 LPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITY 461 (567)
Q Consensus 383 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (567)
+++.+.. .+....+....+..++.+.+.|.+.||+|||+..+..+++..++++.... .+....++.=++-|+..
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-----~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-----SNYPVLLLGRVLGGIAT 135 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH
Confidence 3444433 44556666666778888889999999999999988888888877764332 24455555555555555
Q ss_pred hccccchhhhhcc----cCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHHHHHHh
Q psy3209 462 SLGIGIIPTTLLS----ELFPTNVKSSAASIASIA-FALASFLINKFYKIVQINFGL--YYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 462 ~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 534 (567)
+..+...-.-++. .-+|++..+...+..... ..+.++++..+...+.+..|. ..+|....++.+++.++....
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 5433322211222 335766666666655533 334445555555566666654 577887777777777776555
Q ss_pred ccCCCC
Q psy3209 535 IFETKG 540 (567)
Q Consensus 535 ~~~~~~ 540 (567)
.+|..+
T Consensus 216 W~ENyg 221 (354)
T PF05631_consen 216 WPENYG 221 (354)
T ss_pred ccccCC
Confidence 666544
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0027 Score=66.06 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=115.9
Q ss_pred cchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHhh---
Q psy3209 134 TWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKF-GRKNTLLLTSLVFLTSSLLTIFAQS--- 209 (567)
Q Consensus 134 ~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~--- 209 (567)
++....+..+..+ ++.+...+.-..+.+.-.....++.+++++|-| ||-+++.++.++..+|.++..++..
T Consensus 55 g~~~nlv~ylt~~-----~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~ 129 (571)
T KOG1237|consen 55 GLVSNLVTYLTLE-----LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPA 129 (571)
T ss_pred cchhHHHHHHHHH-----hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456667777777 888888888888888888888999999999965 8999999999999888766554322
Q ss_pred ----------------------HHHHHHHHHHHhccccccccchhhhhhcccC---CCc---chhHHHHHHHHHHHHHHH
Q psy3209 210 ----------------------SYWLFTSRLLSGIGKGVGFTVVPMYIAEITD---KEI---RGTLSTMFTGHLYGGILF 261 (567)
Q Consensus 210 ----------------------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~G~~i 261 (567)
...+..+..+..+|.|+.-+...++-+|-++ +++ +...+.++.....+|.++
T Consensus 130 l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~ 209 (571)
T KOG1237|consen 130 LLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL 209 (571)
T ss_pred cCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH
Confidence 1256667778888999999999999999888 322 236677788888999988
Q ss_pred HHHhhhhh----hhHHHHHHHHHHHHHHHHHh
Q psy3209 262 SLCVGPYI----QYQTLNIILGVIPLVFFITF 289 (567)
Q Consensus 262 ~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 289 (567)
+..+..+. +|.+-|.+..+..++.++++
T Consensus 210 a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 210 AQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 88776665 89999988777665544433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=56.18 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=53.8
Q ss_pred HHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF 197 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 197 (567)
.+......+...|.+|...++ .|++..++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~-----~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQ-----LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 333444445555666666666 8999999999999999999999999999999999988887766544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.029 Score=55.75 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=84.8
Q ss_pred CChhhHHHHHHHHHH-HHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh---------h--------------
Q psy3209 154 LDAEKVSWVVATMDL-GNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ---------S-------------- 209 (567)
Q Consensus 154 ~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---------~-------------- 209 (567)
..+..+.++-+..-+ +..+..++.+++++++.|.+++-+.+..+....+++++.- +
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456677888888888 7788999999999999999999998888888888887731 1
Q ss_pred ---------HHHHHHHHHHHhcccccccc-chhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 210 ---------SYWLFTSRLLSGIGKGVGFT-VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 210 ---------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
.|...+.-.+.=+-.+.+.. .-.....|.+..+|-.|..++++.+.+++.++++.+..++
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222233222 3335667888888889999999999999999988887776
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00049 Score=72.80 Aligned_cols=140 Identities=13% Similarity=0.031 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhccccc
Q psy3209 393 TECLIIFSVLLVVTNFACSPLVDI-AGRKTLNMLSAFLSSGVMIVLAACFYWNF----DYWVSYLFTSLFGITYSLGIGI 467 (567)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 467 (567)
......+....-+..+++|+++|+ +|+++.+.++.++..++..++.+...... .....++.+.+..+|.+..-..
T Consensus 26 ~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~ 105 (654)
T TIGR00926 26 TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPC 105 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccC
Confidence 344444455566777888999997 59999999998888888877665221110 1122344445555555543344
Q ss_pred hhhhhcccCCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhhhHHHHHHHHHHHHHHH
Q psy3209 468 IPTTLLSELFPTN---VKSSAASIASIAFALASFLINKFYKIVQINF-------GLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 468 ~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
+ .+...|.++++ .+-....+.....++|+.+++.+.+++.+.. +|...|.+.+++.+++.++...
T Consensus 106 v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 106 V-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred c-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4 47788887643 4677888888889999999999999887543 4667777777777776655433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0036 Score=62.09 Aligned_cols=142 Identities=13% Similarity=0.027 Sum_probs=76.8
Q ss_pred hhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHH-HHHHHHHhhhhhhhhhhc-----ccchhHHHHH-HH
Q psy3209 122 ASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVA-TMDLGNILSPIPSGYIMD-----KFGRKNTLLL-TS 194 (567)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~ 194 (567)
..+.+++.|.-.+.....+|.+.++ .. -++|.+|.+...- .+... .-++|.++.| |+||||.-++ .-
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~-~~--~~~sy~q~~~fSla~~PfS---lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQS-MA--KKVSYSQQAIFSLASYPFS---LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred HHHHHHHcCcccccccccchhhhcc-cc--CCCChhHheeeeeeechhH---HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 3355677888777776777777654 00 2566666654311 11111 1234555555 8999987654 33
Q ss_pred HHHHHHHHHHHHHh------------------------hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHH
Q psy3209 195 LVFLTSSLLTIFAQ------------------------SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTM 250 (567)
Q Consensus 195 ~~~~i~~~~~~~~~------------------------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 250 (567)
.+.++..+..+..- +...+...-++.=+-.+-.-.+.-...-.+..+++++.+...
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 33333333333211 011122222233333333334444555566778889999888
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q psy3209 251 FTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 251 ~~~~~~~G~~i~~~l~~~l 269 (567)
...+...|.+++..+--.+
T Consensus 159 qtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHhHhhhhHHHHHHHHHhh
Confidence 8888888888876654433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0048 Score=60.05 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHhhccccchhhhhc
Q psy3209 399 FSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFY-----WNFDYWVSYLFTSLFGITYSLGIGIIPTTLL 473 (567)
Q Consensus 399 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (567)
+.+..++|.....++-.+ ++|.+ .+..++-.+..-++..+.+ .-.+.+..++..+++++..+. ...+...++
T Consensus 292 fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY-ltsl~m~~a 368 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY-LTSLIMMYA 368 (406)
T ss_pred hHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch-Hhhheehhc
Confidence 667777886666555443 33332 2222222222222221111 112456666677777776665 344445788
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 474 SELFPTNVKSSAASIASIAFALASFLINKF 503 (567)
Q Consensus 474 ~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 503 (567)
.+.+|++++-.+-.+....-..|-+.|..+
T Consensus 369 Pk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 369 PKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888877666555565555555555544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=52.58 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhc
Q psy3209 394 ECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLL 473 (567)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (567)
....+......++.++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+.|++.+..+.... .++
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-----~~~~~l~~~s~l~G~~~a~lW~aqg-~yl 114 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-----PNSYTLYPASALLGFGAALLWTAQG-TYL 114 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhhHHhhHhhh-HHH
Confidence 4444555667778888899999999999999888777655444332 3566777777888888888777665 788
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 474 SELFPTNVKSSAASIASIAFALASFLINKFYKIV 507 (567)
Q Consensus 474 ~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l 507 (567)
.+...++.+++..++...+.+.+.++|..+.-.+
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999998888888888877665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=59.88 Aligned_cols=104 Identities=24% Similarity=0.274 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHhccccccccchhhhhhcccCCC---cchhHHHHHHHHH
Q psy3209 188 NTLLLTSLVFLTSSLLTIFAQ---------SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKE---IRGTLSTMFTGHL 255 (567)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~---------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 255 (567)
++++++.+++.+|.++..++. +.+.++++-++.++|.|+.=|...++++|-++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578889999999998855542 2357889999999999999999999999999876 3556677888999
Q ss_pred HHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhc
Q psy3209 256 YGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMF 291 (567)
Q Consensus 256 ~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 291 (567)
++|..++..+..++ +|.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999888887 7999999988877765554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0017 Score=65.83 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=86.2
Q ss_pred HHHHhhHHHHHhhh-----cchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCC-
Q psy3209 404 VVTNFACSPLVDIA-----GRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELF- 477 (567)
Q Consensus 404 ~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 477 (567)
....++.|.++|-+ .||+.++++.++..++.+.++.......+.....+.+++..++..+.-.. .-+...|..
T Consensus 38 w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~-aDa~vvE~~~ 116 (433)
T PF03092_consen 38 WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVA-ADALVVELAR 116 (433)
T ss_pred hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHh-hhHHHHHHhh
Confidence 35667889999987 35556666666665555555443221123333333334444444432222 234555553
Q ss_pred --ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhccC
Q psy3209 478 --PTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFE 537 (567)
Q Consensus 478 --p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (567)
|.+ +|...+.+..++.+|+.++..+.|.+.+..+++..|.+.+.+..+..+......+|
T Consensus 117 ~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 117 REPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred cCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 544 78888899999999999999999999999999999988888877776666566665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0038 Score=56.60 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=34.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHh--hh-----hh--hhHHHHHHHHHHHHHHHHHhhcc
Q psy3209 242 EIRGTLSTMFTGHLYGGILFSLCV--GP-----YI--QYQTLNIILGVIPLVFFITFMFI 292 (567)
Q Consensus 242 ~~r~~~~~~~~~~~~~G~~i~~~l--~~-----~l--~wr~~f~~~~~~~~~~~~~~~~l 292 (567)
++|+..+.+...++++|.++.-+. -. .+ +|++.+-+.+++.++-++.+.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777778888888775332 22 11 79999999888877755544443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.02 Score=58.09 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=72.9
Q ss_pred HHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhh---------------------------hHHHHHHHHH
Q psy3209 404 VVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFD---------------------------YWVSYLFTSL 456 (567)
Q Consensus 404 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 456 (567)
++..++-+++++|++|+++............++++...++... .|...++...
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 3447778999999999998877666666666655554332211 2222222222
Q ss_pred HHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 457 FGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
.-.......+-+.|.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333678999999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0053 Score=60.26 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHhcccccccc
Q psy3209 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVF-----LTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 155 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~-----~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 229 (567)
...+..+...+|.+|-.++.--.. +. |+ |++.+.+++-. .+.....-+.++.|.+++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 456777888888877666643221 11 33 44433333222 22222334567899999999999999999999
Q ss_pred chhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 230 VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 230 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
.....+.|-.++++|..+++..+.+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0021 Score=47.07 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=51.6
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHH
Q psy3209 366 LQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL 429 (567)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 429 (567)
+..+++...+.-|.+.++++.+.+ .+.+....+..+..+++.+++|.++||.++++.......+
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334455677888999999988766 6677888888899999999999999999999887765543
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0042 Score=60.71 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHh--hhhhH--HHHHHHHHHHHHhhccc
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYW--NFDYW--VSYLFTSLFGITYSLGI 465 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~ 465 (567)
..+.+...++.+..++..+.+-|+.||+|-|...+++..+..++..+=.....+ ++..+ .....-.+.+....+.
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi- 157 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI- 157 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh-
Confidence 345577788889999999999999999999999999999988887764442222 12223 2233333333333221
Q ss_pred cchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3209 466 GIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQIN 510 (567)
Q Consensus 466 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~ 510 (567)
..++.-...-.||+++|+++..+..+...+|.+++..+-+.+..+
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 222223455668999999999999999899999888877666544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.021 Score=59.12 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH-HHHHHHHHH-HHH----HHHhhH-HHHHHHHHHHhccc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL-TSLVFLTSS-LLT----IFAQSS-YWLFTSRLLSGIGK 224 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~-~~~----~~~~~~-~~l~~~R~l~G~~~ 224 (567)
+|.+....+.+.+++++|.++|+.+++++.++--|+...+- .+.+.+..+ .+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999999999999999988744333322111 111111111 111 111111 22334456677888
Q ss_pred cccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 225 GVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 225 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
|+..|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 8887777766654332 2234555666666666666666665554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.085 Score=52.07 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=95.6
Q ss_pred HHHhhhhhhhhc-cCCchhHHH--HHHHH-HHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy3209 375 ILSYASTTLPEH-HGLIGRTEC--LIIFS-VLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVS 450 (567)
Q Consensus 375 ~~~~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (567)
.-.|+..|+.+. .+....... ..+.. -..++..+....+.|.++.|++++++.+...+...++.+ ..+....
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~----~~sv~~m 97 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF----GTSVLAM 97 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HCcHHHH
Confidence 344566666665 333222221 22222 234455566777899999999999888877777666655 2355555
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhhhHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY--YMFAFYAICSGINV 528 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~--~~~~~~~~~~~~~~ 528 (567)
.+.-+.+|...+. -...++++-..+|+++--.+.+.......+|.+++..++-.+....+.. ....+..+...++.
T Consensus 98 q~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~ 175 (412)
T PF01770_consen 98 QLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL 175 (412)
T ss_pred HHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5556666665543 3334577777788899999999999998899888888877666533322 22233333333333
Q ss_pred HHHHHhccCC
Q psy3209 529 LFTFFFIFET 538 (567)
Q Consensus 529 ~~~~~~~~~~ 538 (567)
++ .+++|..
T Consensus 176 ~~-~~fLP~~ 184 (412)
T PF01770_consen 176 LI-ALFLPMP 184 (412)
T ss_pred HH-HHHcCCC
Confidence 33 3455543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.08 Score=54.07 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=71.5
Q ss_pred HHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---------------------------hhHHHHHHHH
Q psy3209 403 LVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF---------------------------DYWVSYLFTS 455 (567)
Q Consensus 403 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 455 (567)
.++...+-.++++++++.++.............++++..++.. +.|...++.+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4455666788999999999877666665555555555433211 1122222222
Q ss_pred HHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 456 LFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
..-...+.....+.|.+++|..+.++..+-+++.....++|.+++..+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333568999999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00034 Score=67.44 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHhhc
Q psy3209 394 ECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACFYW---------NFDYWVSYLFTSLFGITYSL 463 (567)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 463 (567)
..+..+.++..+|+.+..+..-+. .+|++. +..+.-.+...++...... -.+.+..++.++++++..+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 345577888999999887743221 233333 3322222222222222111 11345556666777777665
Q ss_pred cccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFY 504 (567)
Q Consensus 464 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 504 (567)
. ......+..+.+++++|..+-.+..++-.+|-.+|..+.
T Consensus 265 l-~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 L-STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---HHHH----------------------------------
T ss_pred h-hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444457888888888888887777777777777776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.00051 Score=71.26 Aligned_cols=118 Identities=13% Similarity=-0.023 Sum_probs=0.9
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhh------------------------
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF------------------------ 445 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 445 (567)
.+.+.+...+-++.++..++..++..|..|-+.+-.+.++++++.+++.+......
T Consensus 38 ~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~ 117 (539)
T PF03137_consen 38 SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSS 117 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccc
Confidence 55667777788888899998889999988888888888888888887765211000
Q ss_pred ------------------hh----HHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 446 ------------------DY----WVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKF 503 (567)
Q Consensus 446 ------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 503 (567)
.. +..++.-++.|++... ..++..+|+-|.++++..+...|+......+|.++|-.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~p-l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~l 196 (539)
T PF03137_consen 118 SSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATP-LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLL 196 (539)
T ss_dssp ----------------------------------SSS-------------------------------------------
T ss_pred ccccccCccccccccccccchHHHHHHHHHHHHHhccccC-CccceeeeeccccccccCccchhhhhHHhhccHHHHHHH
Confidence 00 1111122222333222 344556899999999999999999999999999888777
Q ss_pred HHHHH
Q psy3209 504 YKIVQ 508 (567)
Q Consensus 504 ~g~l~ 508 (567)
++...
T Consensus 197 g~~~L 201 (539)
T PF03137_consen 197 GSFCL 201 (539)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.25 Score=51.32 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhHHHHHHHHHHHH
Q psy3209 482 KSSAASIASIAFALASFLINKFYKIVQI-NFGLYYMFAFYAICSGINVLF 530 (567)
Q Consensus 482 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~ 530 (567)
.+...|-...+..+|+++|+++++.+.- ..|......+.+.+.++.+++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4667788888889999999999887764 577665655666555554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.13 Score=49.23 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhh
Q psy3209 392 RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTT 471 (567)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (567)
.+.......+...++.++.|.+.||.|||+.+..+.....++.+...... ....+..++.....+.+.+. ..+...+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 117 (338)
T COG0477 41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--NVGLALLLILRLLQGLGGGG-LLPVASA 117 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhhhHH-HHHHHHH
Confidence 45666666677777779999999999999777766654333322222211 11233333333334444443 4455568
Q ss_pred hcccCCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh--hccchhhh
Q psy3209 472 LLSELFPT-NVKSSAASIASI-AFALASFLINKFYKIVQIN--FGLYYMFA 518 (567)
Q Consensus 472 ~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~--~g~~~~~~ 518 (567)
+..+.+|. +.|+...+.... ...++..++|.+.+.+... .+|+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 88999887 578888888877 5777888888776666554 34444333
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.12 Score=51.99 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=78.9
Q ss_pred HHHHHHHhhhhhhhhhhc---ccchhHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHhcc
Q psy3209 165 TMDLGNILSPIPSGYIMD---KFGRKNTLLLTSLVFLTSSLLTIFA------------------QSSYWLFTSRLLSGIG 223 (567)
Q Consensus 165 ~~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~R~l~G~~ 223 (567)
...+|..++..+.+.+++ ++||++.+.++..+..++.++.-.. +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334445555566666665 6799999999999988888877552 2466778888999999
Q ss_pred ccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 224 KGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 224 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
-+......+.++...+ +++|..+.++...-..++..++....+..
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999 67788888888877777776655554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.08 Score=53.07 Aligned_cols=125 Identities=15% Similarity=0.034 Sum_probs=92.2
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHH------h----hHHHHHHHHHHHh
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA------Q----SSYWLFTSRLLSG 221 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~----~~~~l~~~R~l~G 221 (567)
-|+++..+|..-+.-.+....+.+...++.+|+|..+.=++++....++..++..+ + +...++.+-.+.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999888888877665555444331 1 2333444444444
Q ss_pred ccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy3209 222 IGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNI 276 (567)
Q Consensus 222 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~wr~~f~ 276 (567)
+|.=..-....-++.|..|+++||...+.-....++--++...++-.+...--|.
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~ 422 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFG 422 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcC
Confidence 4444455666778899999999999999999888887777777666554333333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.59 Score=44.14 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccC
Q psy3209 167 DLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITD 240 (567)
Q Consensus 167 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 240 (567)
.+..+...++.+.+..++|.|.++.++...+.... ..=+-+.+..++..-...|++.+..+..--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 34455566666689999999999998887765432 22233568889999999999999999888888876643
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.046 Score=54.51 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhhccccchhhhhcccCCChh---hHHHHHHHHHHH
Q psy3209 421 TLNMLSAFLSSGVMIVLAACFYWNF-----DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTN---VKSSAASIASIA 492 (567)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 492 (567)
+.++++.++..++.+++.+...... .....++.+.+.++|.+. +=|...++..|.++++ ++..........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 4567778888888887666433221 124556666666666665 4444458888888765 566777788889
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy3209 493 FALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTF 532 (567)
Q Consensus 493 ~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (567)
.++|+.+++.+.+++.++.||...|.+.++..+++.+..+
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999989888887777766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.1 Score=43.11 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=72.6
Q ss_pred HHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhh----------------------------hhHHHHHH
Q psy3209 402 LLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF----------------------------DYWVSYLF 453 (567)
Q Consensus 402 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 453 (567)
+.++..++-.++.+++.+.++............++++...++.. +.|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45667777788889999988877666666666666655443210 11222222
Q ss_pred HHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQI 509 (567)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~ 509 (567)
..+.-.-.+....-+.|..++|+...++..+-+++.+...+++..++..+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222233344567889999999999999999999999999999888887765
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=53.40 Aligned_cols=149 Identities=10% Similarity=-0.013 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHh---------h----------------
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYW---------N---------------- 444 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------------- 444 (567)
...+.+...+-++..+...+..++..|..|-+++-.+.++++++.+++.+.-.. .
T Consensus 132 s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~ 211 (735)
T KOG3626|consen 132 SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCC 211 (735)
T ss_pred CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhh
Confidence 344455555567777777777888888888888889999999888887663110 0
Q ss_pred -------------------hh---hH-HHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy3209 445 -------------------FD---YW-VSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLIN 501 (567)
Q Consensus 445 -------------------~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 501 (567)
.+ .+ .+++.-++.|+|-.. +.++..+|+-|.+.+++.....|+..+++.+|.++|-
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp-i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGf 290 (735)
T KOG3626|consen 212 CNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP-IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGF 290 (735)
T ss_pred ccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC-CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHH
Confidence 00 11 111222233333333 3444458899999999999999999999999999998
Q ss_pred HHHHHHHHhh------------------c-cchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 502 KFYKIVQINF------------------G-LYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 502 ~i~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
.+++.+...+ | |+.-|++.+.+.++..+.. ++.|+...
T Consensus 291 llgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp 347 (735)
T KOG3626|consen 291 LLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELP 347 (735)
T ss_pred HHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCc
Confidence 8888776421 1 4445666666666666555 44454433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.1 Score=45.34 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccchh--HHHHHH--HHHHHHHHHHHHH---------HhhHHHHHHHHHHHhccccc
Q psy3209 160 SWVVATMDLGNILSPIPSGYIMDKFGRK--NTLLLT--SLVFLTSSLLTIF---------AQSSYWLFTSRLLSGIGKGV 226 (567)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~--~~~~~i~~~~~~~---------~~~~~~l~~~R~l~G~~~g~ 226 (567)
-.....|.+|-.+|-.+..+.. .-++| .+++.+ =+++.-..++|.. -++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3456666777777776544321 11223 333322 2233333344432 24566777889999999999
Q ss_pred cccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q psy3209 227 GFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP 267 (567)
Q Consensus 227 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 267 (567)
....++.+..+..++++|..+..+...+..+|..+|..++-
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98999999999999999999999998888888888876654
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.075 Score=52.35 Aligned_cols=149 Identities=16% Similarity=0.069 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhh----hcchHHHH-HHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDI----AGRKTLNM-LSAF 428 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~-~~~~ 428 (567)
+.++....+.+..++ ++..-..|.+.|+++.+.. .-.+......-+.+++.+++.|..+|| +|||+..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 334445555555554 3456678899999888754 223344444456678888899999996 67777655 4445
Q ss_pred HHHHHHHHHHHHHHhhh------h-------hHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHH-HHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYWNF------D-------YWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSS-AASIASIAFA 494 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~ 494 (567)
...++++++++...... . ....++.+.++=+.......|.= ++..|+...+.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence 55566665555332211 1 11122222333333334455654 88888887777777 8888888888
Q ss_pred HHHHHHHHHHH
Q psy3209 495 LASFLINKFYK 505 (567)
Q Consensus 495 ~g~~i~~~i~g 505 (567)
+|+.+|-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88887766554
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.79 Score=42.91 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhccc
Q psy3209 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEIT 239 (567)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 239 (567)
|.+.-+-.+-..+..+......||+.--.=..+..++.+.+.++.+++++.++-+++-.+..++.|.....-.++- ..+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SRY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-ccC
Confidence 4444444555566666667778876432224455667778888899999999988888888888876654444433 333
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhcc
Q psy3209 240 DKEIRGTLSTMFTGHLYGGILFSLCVGPYI------QYQTLNIILGVIPLVFFITFMFI 292 (567)
Q Consensus 240 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~l 292 (567)
++ ...+.+..+.+.+.++|..--..+ +-|...++...+.++..+.++++
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 33 223333333333334443222222 45666777666666655555554
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.8 Score=40.47 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHH
Q psy3209 451 YLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFAL 495 (567)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 495 (567)
++...+++++.+..-+.+ +..+++ +|+++....++-.+.++.+
T Consensus 121 ~~~vv~~~~a~a~~qgs~-~G~a~~-~P~~ytqavm~G~a~aG~l 163 (406)
T KOG1479|consen 121 LIIVVLLNLANAVVQGSL-YGLAGL-FPSEYTQAVMSGQALAGTL 163 (406)
T ss_pred HHHHHHHhhhhhhhccch-hhhhhc-CCHHHHHHHHhcchhHhHH
Confidence 333444444444333333 344444 4878766655544444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.7 Score=34.30 Aligned_cols=67 Identities=9% Similarity=-0.132 Sum_probs=54.4
Q ss_pred HHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q psy3209 373 STILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAA 439 (567)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 439 (567)
+.+...+|...++...+ .+.++......++.++|.+...++.++.++++.+..+.+...+..+.+.+
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777766 66778888899999999999999999888888888888888888777776
|
Note that many members are hypothetical proteins. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=91.10 E-value=12 Score=39.50 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh------------------hh-HHHHHH
Q psy3209 394 ECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACFYWNF------------------DY-WVSYLF 453 (567)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~~ 453 (567)
.....+........+++++++|-+ ||-+.+.++.++..+++.++........ +. ...++.
T Consensus 77 ~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~ 156 (571)
T KOG1237|consen 77 NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLY 156 (571)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHH
Confidence 334444555667778889999975 7878888888887777665554322110 00 111122
Q ss_pred HHH--HHHHhhccccchhhhhcccCCC---h-hhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHH
Q psy3209 454 TSL--FGITYSLGIGIIPTTLLSELFP---T-NVKS--SAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSG 525 (567)
Q Consensus 454 ~~~--~~~~~~~~~~~~~~~~~~~~~p---~-~~~~--~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~ 525 (567)
..+ ..++.+ +.-+...++-+|.++ + +.+. .-+.......++|..++..+..+..++.||...|.+..+..+
T Consensus 157 ~~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~ 235 (571)
T KOG1237|consen 157 GALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNA 235 (571)
T ss_pred HHHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHH
Confidence 222 222222 334444477788887 2 2223 445556667788888888887777788999988888877777
Q ss_pred HHHHHHH
Q psy3209 526 INVLFTF 532 (567)
Q Consensus 526 ~~~~~~~ 532 (567)
++.++.+
T Consensus 236 lai~iF~ 242 (571)
T KOG1237|consen 236 LAILIFL 242 (571)
T ss_pred HHHHHHH
Confidence 7655543
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.6 Score=42.16 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=26.1
Q ss_pred hhhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy3209 470 TTLLSELFPTNVKSSAASIASIAFALASFLIN 501 (567)
Q Consensus 470 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 501 (567)
.....|..|.+.|..+.|+.|.........--
T Consensus 408 tqimQe~VpEseR~vv~gvqnsL~~~ldll~~ 439 (503)
T KOG2601|consen 408 TQIMQETVPESERCVVFGVQNSLNSALDLLKD 439 (503)
T ss_pred HHHHHHhcchhhhhhhHhHHHHHHHHHHHHHH
Confidence 36788999999999999999988877665543
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=89.29 E-value=2 Score=40.31 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=81.3
Q ss_pred ccCC-hhhHHHHHHHHHHHHHhhhhhhhhhhcccch-h-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Q psy3209 152 FELD-AEKVSWVVATMDLGNILSPIPSGYIMDKFGR-K-----NTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGK 224 (567)
Q Consensus 152 ~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r-----~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 224 (567)
+..+ ..|.-|....|.+|-.+..- +-++=+ + .++..-..++.+...+..+.++++..++.-+.-|+-.
T Consensus 282 ~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlG 356 (409)
T KOG3880|consen 282 FSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLG 356 (409)
T ss_pred CccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Confidence 4444 34577888888776543321 111111 1 2233334455556666778899999999999999999
Q ss_pred cccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy3209 225 GVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI 269 (567)
Q Consensus 225 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 269 (567)
|..++...--+.+-.++++|-.+|+....+-.+|..++..++-.+
T Consensus 357 GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 357 GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 999988888888888899999999999999999999888876554
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=15 Score=35.28 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=58.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHH-----HHHHHHH----hhHHHHHHHHHHHhc
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTS-----SLLTIFA----QSSYWLFTSRLLSGI 222 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~-----~~~~~~~----~~~~~l~~~R~l~G~ 222 (567)
.|-..-|.+++.+.|.+..++|+...-++.|.--.-+.+..-+++..++ .+-..|+ ++-+.+++.-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3556778899999999999999999988887533322222222222221 1122333 356678888999999
Q ss_pred cccccccchhhhhhc
Q psy3209 223 GKGVGFTVVPMYIAE 237 (567)
Q Consensus 223 ~~g~~~~~~~~~i~e 237 (567)
-.|...|..+.++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 999999999888765
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.4 Score=40.44 Aligned_cols=147 Identities=19% Similarity=0.049 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchh
Q psy3209 390 IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIP 469 (567)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (567)
.+.+..++......++.+.+.|-++||.|||+.-+.-++...++++. .......+.++.-.+-|+..+..+...-
T Consensus 72 G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-----KhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 72 GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-----KHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-----hcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 34444444434456677778889999999998655444433333321 1111222222333333333333222222
Q ss_pred hhhcccCC-----ChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc--chhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy3209 470 TTLLSELF-----PTNVKSSAASIAS-IAFALASFLINKFYKIVQINFGL--YYMFAFYAICSGINVLFTFFFIFETKGK 541 (567)
Q Consensus 470 ~~~~~~~~-----p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (567)
.-++.|.. |.+......+=.. ....+-+++....+..+.+.++. -.+|-..+.+..++..+...-..|..++
T Consensus 147 sWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 147 SWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCC
Confidence 22445543 3333333333222 22234444555555556666544 3455544444444444443333344333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=84.40 E-value=4.9 Score=40.70 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=20.4
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 471 TLLSELFPTNVKSSAASIASIAFALASFLINKFY 504 (567)
Q Consensus 471 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 504 (567)
.++..+..++..+-+........++|.+++-.++
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence 3444555667777776665555666666655444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=83.63 E-value=0.32 Score=46.95 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=3.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHH--HHHHHHHHHHHH----------HHhhHHHHHHHHHHHhccccccc
Q psy3209 162 VVATMDLGNILSPIPSGYIMDK-FGRKNTLLLT--SLVFLTSSLLTI----------FAQSSYWLFTSRLLSGIGKGVGF 228 (567)
Q Consensus 162 ~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~--~~~~~i~~~~~~----------~~~~~~~l~~~R~l~G~~~g~~~ 228 (567)
....|.++-.+|..+.++.-=+ -.+|++.+.+ =+++.-..++|. +.+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567777888888776653211 1344444332 222222223331 23455677888999999999999
Q ss_pred cchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q psy3209 229 TVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP 267 (567)
Q Consensus 229 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 267 (567)
..++.+..+..++++|..+..+...+..+|..+|..++-
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp HHHH-----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888887776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.49 E-value=36 Score=31.52 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc-ccchhHHHH----HHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHhcccccccc
Q psy3209 160 SWVVATMDLGNILSPIPSGYIMD-KFGRKNTLL----LTSLVFLTSSLLTIF-A----QSSYWLFTSRLLSGIGKGVGFT 229 (567)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~R~l~G~~~g~~~~ 229 (567)
....-++..|..+|.+..|+... .+-||+.+. .+++++.+..+.... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455666777788888888887 456666554 234444444443212 1 1466678888888877533333
Q ss_pred chhhhhhcccCCCcchhHHHHHHHHHHHHHHH
Q psy3209 230 VVPMYIAEITDKEIRGTLSTMFTGHLYGGILF 261 (567)
Q Consensus 230 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i 261 (567)
+... +..-++...+.+..-+++..+++|.++
T Consensus 224 ViL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILN-LPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhc-ChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 3332 222233333444444555666666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 567 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-13 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 82/242 (33%)
Query: 284 VFFITF---------MFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTT 334
+F++ + + + + I + + S NI + I
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---------SSNIKLRIHSI---- 230
Query: 335 NENMKNKSGYRELVSNYSYRKALII------------------VLVTSFLQRLSGVSTIL 376
++ R L+ + Y L++ +L+T+ R V+ L
Sbjct: 231 ------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFL 281
Query: 377 SYASTT---LPEHHGLIGRTECLIIFSVLLVVTNF-----AC--SPLVDIAGRKTLNMLS 426
S A+TT L H + E + L +P L++++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIA 334
Query: 427 AFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSEL------FPTN 480
+ G+ W D W ++ + ++ ++ FP +
Sbjct: 335 ESIRDGLAT-------W--DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 481 VK 482
Sbjct: 385 AH 386
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 57/403 (14%), Positives = 128/403 (31%), Gaps = 40/403 (9%)
Query: 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNT----LLLTSLVFLTSSLLTIF 206
+ + ++ + + S G + D+ + L+L + V L +
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 207 AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCV 265
S +F L G +G+G+ + ++ RG + +++ H GG + L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 266 GPYIQY----QTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320
+ + + ++ F + +TP + + ++ +
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP----IEEYKNDYPDDYN 231
Query: 321 QNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVT---SFLQRLSGVSTILS 377
+ +EL + + NK + ++N L ++ ++L+ + + S
Sbjct: 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV-YLLRYGILDWSPTYLKEVKHFALDKS 290
Query: 378 YASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437
+ L E+ G+ G ++ + S V R + L + IV
Sbjct: 291 SWAYFLYEYAGIPG----TLLCGWM--------SDKVFRGNRGATGVFFMTLVTIATIVY 338
Query: 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI----ASIAF 493
N + + F I G ++ EL P +AA +
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIY---GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395
Query: 494 ALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536
++A+ I + V FG F S + V+ +
Sbjct: 396 SVAASAIVGY--TVD-FFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 177 SGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIA 236
+ I+++ G KN LLL + + + FA S+ + + L YI
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 237 EITDKEIRGTLSTMFTGHLYG--GILFSLCVGP---YIQYQTLNIILGVIPLVFFITFMF 291
+ T+ + I S+ G I +Q ++LG++ L F + +F
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398
Query: 292 I 292
Sbjct: 399 T 399
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 47/398 (11%), Positives = 97/398 (24%), Gaps = 45/398 (11%)
Query: 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWL 213
+ + A + L ++L G + DK G + LL L L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 214 ----FTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI---LFSLCVG 266
++ GI G F + +K R + ++G + L + VG
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 267 PYIQYQTLNII--LGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNIT 324
+ L+ + F N A +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------- 210
Query: 325 EELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYA-STTL 383
+ + + K + L + V T+
Sbjct: 211 --------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 384 PEHHGLIGRTE-CLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFY 442
R + LL + +PL+ I N L L+ +M V
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLI-INRIGGKNAL--LLAGTIMSVRIIGSS 307
Query: 443 WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA-ASIASIAFALASFLIN 501
+ + +L + + ++ F ++ LA ++
Sbjct: 308 FATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 502 KFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETK 539
+ + G + + + L + F +
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 60/364 (16%), Positives = 113/364 (31%), Gaps = 67/364 (18%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
+ V V+ L +S + G I D+ GR+ +L+ +F+ ++L+ + S
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY 271
L + + G+G GVG V+ D R L L GIL S + P I
Sbjct: 90 VLIAASAMQGMGTGVG-GVMAR--TLPRDLYERTQLRHAN-SLLNMGILVSPLLAPLIGG 145
Query: 272 QTLNI-----------ILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320
+ +L V F ++PET V A ++
Sbjct: 146 LLDTMWNWRACYLFLLVLCA--GVTFSMARWMPET---------RPVDAPRTRLL----- 189
Query: 321 QNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYAS 380
+ Y+ L N +L+ L+G++ + +
Sbjct: 190 ---------------------TSYKTLFGN---SGFNCYLLMLIGG--LAGIAAFEACSG 223
Query: 381 TTLPEHHGLIGRTECLIIF---SVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437
+ GL I+F + + L +G+++ +
Sbjct: 224 VLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWI 282
Query: 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIP--TTLLSELFPTNVKSSAASIASIAFAL 495
F + L + G+ + P T+ E FP ++ A + +
Sbjct: 283 PDWFGVMNVWT---LLVPAALFFFGAGM-LFPLATSGAMEPFPFLAGTAGALVGGLQNIG 338
Query: 496 ASFL 499
+ L
Sbjct: 339 SGVL 342
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.45 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.32 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.24 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.24 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.22 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=390.41 Aligned_cols=439 Identities=23% Similarity=0.330 Sum_probs=345.3
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCc----cCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchh
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPF----ELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRK 187 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 187 (567)
..+.+.+.++.+++.+..|+|.++++.++|.+.++ +..+. +.+..+.|++.+++.+|..+|++++|+++||+|||
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTV-FVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHH-HTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45667777778899999999999999999999877 11111 23456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHH
Q psy3209 188 NTLLLTSLVFLTSSLLTI------------------FAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLST 249 (567)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 249 (567)
++++++.+++.+++++++ +++|++.++++|+++|++.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHHHHhhcccCCchhHHhhcCcHHHHHHHHHHhc
Q psy3209 250 MFTGHLYGGILFSLCVGPYI------------QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFK 317 (567)
Q Consensus 250 ~~~~~~~~G~~i~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~ 317 (567)
+.+.+..+|.++++.++... +||+.+.+..+.+++.++..+++||||+|+ ..+++.+++.+.+++..
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L-~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL-MSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHH-HHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHH-HHcCchhHHHHhHHHhc
Confidence 99999999999988887654 588888888888888888888999999999 89999999988888766
Q ss_pred CCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHH
Q psy3209 318 GKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECL 396 (567)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 396 (567)
.++...++..+. .....+ .++.......++ .++.........+.++.+.+.+..|.+.+....+.. .......
T Consensus 245 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 245 GNTLATQAVQEI-KHSLDH-GRKTGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHHHHHHH-HHHHHH-HHHHTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCchhHHHHHHH-HHHHHh-hhhhhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 543321111111 111111 111111222222 223445555666667778888888888888777655 3344556
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccC
Q psy3209 397 IIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSEL 476 (567)
Q Consensus 397 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (567)
.+.++..+++.++++++.||+|||+.++.+.....++++.+..........+..++..+++..+++.++.++.+.+.+|+
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 67788899999999999999999999999988888888777665544444555566666667777778888888999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhccchhhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q psy3209 477 FPTNVKSSAASIASIAFALASFLINKFYKIVQI------NFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550 (567)
Q Consensus 477 ~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (567)
+|++.|+++.|+.+.++++++++++.+++.+.+ ..+....|++++++++++.++.+++.||||+|+++|+++..
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f 478 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW 478 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence 999999999999999999999999988876643 34555678899999999999999999999999999998877
Q ss_pred hhCCCCCC
Q psy3209 551 KKKTATTQ 558 (567)
Q Consensus 551 ~~~~~~~~ 558 (567)
++++++++
T Consensus 479 ~~~~~~~~ 486 (491)
T 4gc0_A 479 EPETKKTQ 486 (491)
T ss_dssp C-------
T ss_pred CCCCcccc
Confidence 76655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=320.23 Aligned_cols=394 Identities=12% Similarity=0.029 Sum_probs=296.0
Q ss_pred HHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHH
Q psy3209 113 TKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLL 192 (567)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 192 (567)
..++..+...+++.+..+++.....+.+|.+.++ + .+..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 97 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence 3445566677788888999999999999999998 9 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH----HhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q psy3209 193 TSLVFLTSSLLTIF----AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY 268 (567)
Q Consensus 193 ~~~~~~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 268 (567)
+.++++++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999998877
Q ss_pred h----h-hHHHHHHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccc
Q psy3209 269 I----Q-YQTLNIILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKS 342 (567)
Q Consensus 269 l----~-wr~~f~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (567)
+ + ||+.|++.++++++ .++.++++||+|+.. ..++.++. . .. ...+.++ ...++....+.
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~--~~-~~~~~~~--~~~~~~~~~~~ 243 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEY--------K--ND-YPDDYNE--KAEQELTAKQI 243 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT-CCCSCTTT--------C--CC----------------CCTHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc-CCCChhhh--------c--cc-ccccchh--hhhcccccccc
Confidence 4 7 99999999988876 455566789987543 11110000 0 00 0000000 00000001111
Q ss_pred cHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhh--c
Q psy3209 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIA--G 418 (567)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g 418 (567)
..++.++++.++. ..+..+......+.+..+.|.++++..+. ...+.......++.+++.++.+++.||+ +
T Consensus 244 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 318 (451)
T 1pw4_A 244 FMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 318 (451)
T ss_dssp HHHHTSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1355566554432 22222233334567788999999885433 4456777788889999999999999999 9
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHH-H
Q psy3209 419 RKTLNMLSAFLSS-GVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFAL-A 496 (567)
Q Consensus 419 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g 496 (567)
+|+.+..+..+.. ++.+++.. ....+.+...+..++.+++.+.. .+..+.+..|.+|++.|+++.|+.+.+.++ |
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 319 NRGATGVFFMTLVTIATIVYWM--NPAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTS--CCTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 9988877766655 44333322 11123444455555566555443 344458899999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHh
Q psy3209 497 SFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFF 534 (567)
Q Consensus 497 ~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (567)
..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 396 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 396 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888887777665444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=300.53 Aligned_cols=361 Identities=13% Similarity=0.107 Sum_probs=278.5
Q ss_pred HHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHH
Q psy3209 117 IAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLV 196 (567)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 196 (567)
.....+++..+..+++....++.+|.+.++ +|++..+.+++.+++.++..++++++|+++||+|||++++++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA-----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 334455667778888888999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh---
Q psy3209 197 FLTSSLLT---IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQ--- 270 (567)
Q Consensus 197 ~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~--- 270 (567)
++++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+-
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHhh--cccCCchhHHhhcCcHHHHHHHHHHhcCCCc
Q psy3209 271 ---------------------------YQTLNIILGVIPLVFFITFM--FIPETPYFHIIKDNNQVAAKKSLEWFKGKSQ 321 (567)
Q Consensus 271 ---------------------------wr~~f~~~~~~~~~~~~~~~--~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (567)
||+.|++.+++.++..+.++ ..||+++.. ++ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~---------------~ 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----HS---------------D 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----CC---------------C
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----cc---------------c
Confidence 99999888777665433333 346654210 00 0
Q ss_pred chHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhh-hhhccC-C-chhHHHHHH
Q psy3209 322 NITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTT-LPEHHG-L-IGRTECLII 398 (567)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~ 398 (567)
+++...+.++++++++|.++...+..++ .......+..+.|.+ +++..+ + ...+.....
T Consensus 242 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 303 (438)
T 3o7q_A 242 -------------AKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG 303 (438)
T ss_dssp -------------SSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred -------------ccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 0111122355677777655443322222 222345667888888 777633 3 455677777
Q ss_pred HHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCC
Q psy3209 399 FSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFP 478 (567)
Q Consensus 399 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 478 (567)
..++.+++.++.+++.||++||+.+..+.++..++.+++.. ..+.+ ..+..++.+++.+.. .+..+++..|.+|
T Consensus 304 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 304 TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF----AGGHV-GLIALTLCSAFMSIQ-YPTIFSLGIKNLG 377 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHTTH-HHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----cCCcH-HHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence 88899999999999999999999998888777766655444 11222 333445556665543 4555688889998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHH
Q psy3209 479 TNVKSSAASIASIAFALASFLINKFYKIVQINFG-LYYMFAFYAICSGIN 527 (567)
Q Consensus 479 ~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~ 527 (567)
++ ++.+.++.. ...+|++++|.+.|.+.+..| +...|.+.+++.++.
T Consensus 378 ~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 378 QD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp GG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred cc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 66 888888877 677999999999999999999 877777655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.25 Aligned_cols=351 Identities=13% Similarity=0.147 Sum_probs=267.0
Q ss_pred HHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHH
Q psy3209 120 FSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLT 199 (567)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 199 (567)
+..++..+..++......+.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-----LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 345566777888888999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q psy3209 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLN 275 (567)
Q Consensus 200 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f 275 (567)
+.++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ +||+.|
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876 899999
Q ss_pred HHHHHHHHHHHH-HhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
++.+++.++..+ ..+++||+++.. ++ +++...++++.+++|..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~ 202 (375)
T 2gfp_A 158 LFLLVLCAGVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFN 202 (375)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchH
Confidence 998888777544 556688876421 00 011223445566655443
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccC-C-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHH-HH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHG-L-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL-SS 431 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~ 431 (567)
...+ ..+........+..+.|.++++..+ + ...+.......++.+++.++.+++.||.+++ ...+..+ ..
T Consensus 203 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 203 CYLL-----MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3222 2222233456677888888877432 2 3445666777788889999999999998873 2222222 22
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3209 432 GVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF 511 (567)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~ 511 (567)
.+...+........+.+..++..++.+++.+... +...++..|.+| ++|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222111111112244445555666666666544 444588999998 89999999999999999999999999998877
Q ss_pred ccchhhhH
Q psy3209 512 GLYYMFAF 519 (567)
Q Consensus 512 g~~~~~~~ 519 (567)
++...+.+
T Consensus 354 ~~~~~~~~ 361 (375)
T 2gfp_A 354 QGSLGLLM 361 (375)
T ss_dssp HHHHHHHH
T ss_pred cccHHHHH
Confidence 76544444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=267.97 Aligned_cols=385 Identities=11% Similarity=0.033 Sum_probs=247.9
Q ss_pred CCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccc
Q psy3209 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDK-FGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGF 228 (567)
Q Consensus 150 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 228 (567)
+++|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3489999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhc-ccCCc----h
Q psy3209 229 TVVPMYIAEITDKEI--RGTLSTMFTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMF-IPETP----Y 297 (567)
Q Consensus 229 ~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~-lpesp----~ 297 (567)
+...+++.|++|+++ |+.++++++.+..+|.+++|.+++.+ |||+.|++.++..++.++.+++ .|+.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 77788889999999999999988876 8999999987776654333332 22211 0
Q ss_pred hHHhhcCcHHHHHHHHHH----------------h-cCCCcchHHHHHH-HH--HH--hhhhhcccccHHHHhcchhhhH
Q psy3209 298 FHIIKDNNQVAAKKSLEW----------------F-KGKSQNITEELDE-IV--LT--TNENMKNKSGYRELVSNYSYRK 355 (567)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~~~~~~~~~ 355 (567)
.. .++.+.++.++..+. . +..+.+....... .. .. ......+........+++...
T Consensus 207 ~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 284 (491)
T 4aps_A 207 RP-TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVS- 284 (491)
T ss_dssp CC-SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTT-
T ss_pred CC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHH-
Confidence 00 111223333332222 0 1111110000000 00 00 000000000000000110111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHH-----HHHH
Q psy3209 356 ALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNM-----LSAF 428 (567)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-----~~~~ 428 (567)
.....+.....+..+.....+.+.+..+..+. ...+.......+..+++.++.+++.||++||+... .+..
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 285 --YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp --HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 11111111111112223334455555543322 34556667778888889999999999999986544 5555
Q ss_pred HHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 429 LSSGVMIVLAACFYW-----NFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKF 503 (567)
Q Consensus 429 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 503 (567)
+.+++.+++...... ..+.+...+..++.+++.+.. .+..+.++.|.+|++.|+++.|+.+...++|.+++|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554442211 113444555556666666553 44556899999999999999999999999999999999
Q ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 504 YKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 504 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
.+.+.+ .++...|.+++++++++.++.+++.++.++
T Consensus 442 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 442 VTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 466677888888877777776665554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=244.81 Aligned_cols=365 Identities=12% Similarity=0.030 Sum_probs=231.2
Q ss_pred cchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHHHHhh
Q psy3209 134 TWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSL---LTIFAQS 209 (567)
Q Consensus 134 ~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~---~~~~~~~ 209 (567)
+...+.+|. +.++ +|.+..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. .+++++.
T Consensus 24 ~~~~~~~~~~l~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (417)
T 2cfq_A 24 GAYFPFFPIWLHDI-----NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL 98 (417)
T ss_dssp HHHTTTHHHHHHTT-----TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555 4455 899999999999999999999999999999999999999999888765332 2233332
Q ss_pred HH-HHHHHHHHHhccccccccchhhhhhcccCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHH
Q psy3209 210 SY-WLFTSRLLSGIGKGVGFTVVPMYIAEITDK--EIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLNIILGVIPL 283 (567)
Q Consensus 210 ~~-~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f~~~~~~~~ 283 (567)
.. .++..+++.|++.+..++.....+.++.++ ++++...+....+..+|..++|.+++.+ +||+.|++.++..+
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178 (417)
T ss_dssp HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 21 245667777777766655555555555543 3456666777666677777777777665 79999998777655
Q ss_pred HHHHHhhccc-CCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhhHHHHHHHH
Q psy3209 284 VFFITFMFIP-ETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLV 362 (567)
Q Consensus 284 ~~~~~~~~lp-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (567)
+.++..++.+ |+|+. .++.+ ..+. +.++....+++++++++.++...+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~--~~~~~------------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPSS--ATVAN------------AVGA-------------NHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp THHHHSCSSCCCCSCS--SCSSS------------SSSS-------------CCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccc--ccccc------------cccc-------------ccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 5444444444 43210 00000 0000 0000111234566776655433322111
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCC-----chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHH
Q psy3209 363 TSFLQRLSGVSTILSYASTTLPEHHGL-----IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437 (567)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 437 (567)
.. ..+..+..+.|.++.+.... ...+.......++.+++.++.++++||+|||+.+..+..+.+++.+++
T Consensus 232 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 232 VS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 11 12223334456555443221 112344555566788899999999999999998887776666654443
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchh
Q psy3209 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQINFGLYYM 516 (567)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~ 516 (567)
.. ..+.+..++..++.+++... ..+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...
T Consensus 307 ~~----~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 307 SF----ATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp TT----CCSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred HH----hccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 32 12333333333334443332 2233357999999999999999994 888899999999999999998888788
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCC
Q psy3209 517 FAFYAICSGINVLFTFFFIFETKG 540 (567)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~ 540 (567)
|.+.+++.+++.++.+...+++++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCc
Confidence 888888888877766555555444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-27 Score=244.35 Aligned_cols=386 Identities=13% Similarity=0.079 Sum_probs=217.2
Q ss_pred CChhhHHHHHHHHHHHHHhhhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhccccccccch
Q psy3209 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKF-GRKNTLLLTSLVFLTSSLLTIFAQ-SSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 154 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|+++|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhcccCCCcchhHHHH---HHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHhhcc-cCCchhHHhhc
Q psy3209 232 PMYIAEITDKEIRGTLSTM---FTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFITFMFI-PETPYFHIIKD 303 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~l-pesp~~~~~~~ 303 (567)
.+++.|++|+++|+++.+. .+.+..+|.+++|.+++.+ +||+.|++.+++.++.++.+++. |+.++.. .++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMP-PEP 209 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCC
Confidence 9999999999999877666 8888999999999988776 79999999888776654444332 2211000 000
Q ss_pred CcHHHHHHHH-HHhcCCCcchHH--HHHHHHHH------------------------hhhhhcccccHHHHh------c-
Q psy3209 304 NNQVAAKKSL-EWFKGKSQNITE--ELDEIVLT------------------------TNENMKNKSGYRELV------S- 349 (567)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~~~------~- 349 (567)
.+..+..+.+ ...+....+.+. ........ ...+.+.+.+++++. +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 210 KDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPD 289 (524)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCS
T ss_pred ccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccH
Confidence 0000100000 000111000000 00000000 000000011110000 0
Q ss_pred -chhhhHHHHH--HHHHHHHHHhhhHHHHHHhhhhhhhhccCCc--hhHHHHHHHHHHHHHHHhhHHHHH----hhhcc-
Q psy3209 350 -NYSYRKALII--VLVTSFLQRLSGVSTILSYASTTLPEHHGLI--GRTECLIIFSVLLVVTNFACSPLV----DIAGR- 419 (567)
Q Consensus 350 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~- 419 (567)
....+++... .........+..+.....+.+.+........ ..+.......++.+++..+.+++. +|.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 0000111111 1111100000000000111111111111101 233333333344555555555543 44432
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHH
Q psy3209 420 ---KTLNMLSAFLSSGVMIVLAACFY-----WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491 (567)
Q Consensus 420 ---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 491 (567)
++.+..+.++.+++.+++..... ...+.+..++..++.+++.+. ..+..+.+..|.+|++.||+++|+.++
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~ 448 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVL-VSATGLEFAYSQAPKAMKGTIMSFWTL 448 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHH-HHHHHTTTHHHHCCTTCCTTTHHHHGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcHHHHhHHHHHHHH
Confidence 24455565555555544433110 011334444555566666554 344456889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----------cc-chhhhHHHHHHHHHHHHHHHhccCCCCC
Q psy3209 492 AFALASFLINKFYKIVQINF----------GL-YYMFAFYAICSGINVLFTFFFIFETKGK 541 (567)
Q Consensus 492 ~~~~g~~i~~~i~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (567)
..++|+.++|.+.+.+.+.. +. ...|++.+++++++.++.+++.++.+++
T Consensus 449 ~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 449 SVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp GHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999887532 11 1226666776666666655555554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-13 Score=133.97 Aligned_cols=180 Identities=11% Similarity=0.071 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHH
Q psy3209 358 IIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIV 436 (567)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 436 (567)
+...++..+........+..+.|.+.++. .+ .+.+.......++.+++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333334444566677777666 44 56778888889999999999999999999999999999888888777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cch
Q psy3209 437 LAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFG-LYY 515 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~ 515 (567)
+.+......+.+..++..++.+++.+... +...+++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+..| |+.
T Consensus 109 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~ 187 (451)
T 1pw4_A 109 MGFVPWATSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA 187 (451)
T ss_dssp HHHCHHHHSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTT
T ss_pred HHhhhhccccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 65521112345566666777777776544 4445899999999999999999999999999999999999889898 999
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCC
Q psy3209 516 MFAFYAICSGINVLFTFFFIFETK 539 (567)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~ 539 (567)
.|++.+++.++..++.+++.+|..
T Consensus 188 ~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 188 ALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhccCCH
Confidence 999998888877777666666643
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=130.62 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=112.8
Q ss_pred hhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh-----hH
Q psy3209 136 PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQ-----SS 210 (567)
Q Consensus 136 ~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~ 210 (567)
+....|.+.+. .+.+............+...++.++.+++.||+|||+.++.+..+..++.+..+... +.
T Consensus 296 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 296 VLYYAPEVFKT-----LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHhcchHHHHh-----cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 33445666666 677777777777788889999999999999999999999999988888877665532 12
Q ss_pred HHHH-HHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHHH
Q psy3209 211 YWLF-TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI----------QYQTLNIILG 279 (567)
Q Consensus 211 ~~l~-~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l----------~wr~~f~~~~ 279 (567)
..++ +.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|.++++.+.+.+ ++.+.|++.+
T Consensus 371 ~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2222 22222233322 3466778999999999999999999988888888877665543 3556777877
Q ss_pred HHHHH-HHHHhhcccCC
Q psy3209 280 VIPLV-FFITFMFIPET 295 (567)
Q Consensus 280 ~~~~~-~~~~~~~lpes 295 (567)
+++++ .++.++++|||
T Consensus 450 ~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHheecCC
Confidence 77776 45667789998
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-11 Score=123.64 Aligned_cols=159 Identities=16% Similarity=0.084 Sum_probs=125.2
Q ss_pred hHHHHHHhhhhhhhhc-----cC-C-chhHHHHHHHHHHHHHHHhhHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHH
Q psy3209 371 GVSTILSYASTTLPEH-----HG-L-IGRTECLIIFSVLLVVTNFACSPLVDI-AGRKTLNMLSAFLSSGVMIVLAACFY 442 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~-----~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~ 442 (567)
.++.+..+.+.++.+. .+ + .+.+.......++..++.++.|+++|| +|||+.+..+.++..++.+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 4566667777777764 33 3 456677788889999999999999999 89999999998888887776654
Q ss_pred hhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHH
Q psy3209 443 WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNV--KSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFY 520 (567)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~ 520 (567)
..+.+..++..++.+++.+... +...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||++.|++.
T Consensus 105 -~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 105 -PFGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3355566666677777766544 444589999999888 888888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh
Q psy3209 521 AICSGINVLFTFFF 534 (567)
Q Consensus 521 ~~~~~~~~~~~~~~ 534 (567)
++..+++.++..+.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 183 AIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777666555444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-11 Score=119.68 Aligned_cols=159 Identities=8% Similarity=-0.073 Sum_probs=122.0
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
.........|.+.++.+.+ .+.+.......++.+++.++.|+++||+|||+.+..+.++.+++.++..... ...+.+.
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 119 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHH
Confidence 3455566677766665544 5567788888899999999999999999999999999999888887764321 2345666
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc----------------
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQ-INFG---------------- 512 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~-~~~g---------------- 512 (567)
.++..++.+++.+...... .+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 120 l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhh
Confidence 6677777777777644444 589999999999999999999999999999999999988 4443
Q ss_pred ---------cchhhhHHHHHHHHHHHHH
Q psy3209 513 ---------LYYMFAFYAICSGINVLFT 531 (567)
Q Consensus 513 ---------~~~~~~~~~~~~~~~~~~~ 531 (567)
|++.|++.+++.++..++.
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777666665555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=121.34 Aligned_cols=157 Identities=12% Similarity=0.036 Sum_probs=120.6
Q ss_pred hHHHHHHhhhhhhhhccC-------C-chhHHHHHHHHHHHHHHHhhHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHH
Q psy3209 371 GVSTILSYASTTLPEHHG-------L-IGRTECLIIFSVLLVVTNFACSPLVDIA-GRKTLNMLSAFLSSGVMIVLAACF 441 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~ 441 (567)
.++....+++.++.+..+ + .+.+.......++.+++.+++|+++||+ |||+.+..+.++..++.+++.+
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-- 104 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI-- 104 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--
Confidence 345566777777765433 3 5567778888899999999999999999 9999999888888777766554
Q ss_pred Hhhh-hhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccchhh
Q psy3209 442 YWNF-DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI---ASIAFALASFLINKFYKIVQINFGLYYMF 517 (567)
Q Consensus 442 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~i~g~l~~~~g~~~~~ 517 (567)
.. +.+..++..++.+++.+.. .+...+++.|.+|+++|+.+.++ .+...++|..++|.+.+.+.+..||+..|
T Consensus 105 --~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 105 --FEHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp --TSSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred --hcccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 22 4555556666677776654 44445899999999999766665 88899999999999999999988999888
Q ss_pred hHHHHHHHHHHHHHH
Q psy3209 518 AFYAICSGINVLFTF 532 (567)
Q Consensus 518 ~~~~~~~~~~~~~~~ 532 (567)
++.+++.+++.++.+
T Consensus 182 ~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 182 GIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666655543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=123.62 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhhh
Q psy3209 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234 (567)
Q Consensus 155 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 234 (567)
+....+++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999999988888888888888888888888888877666777889
Q ss_pred hhcccCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-HhhcccCCc
Q psy3209 235 IAEITDKEIRGTLSTM-FTGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFI-TFMFIPETP 296 (567)
Q Consensus 235 i~e~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~~lpesp 296 (567)
+.|.+|++.|+.+.++ ++....+|.+++|.+++.+ |++..|.+.++++++..+ .+++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4777788888888887765 688888888877776443 445567654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=121.11 Aligned_cols=164 Identities=11% Similarity=0.124 Sum_probs=126.2
Q ss_pred hHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy3209 371 GVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV 449 (567)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (567)
....+....|.+.++.+.+ .+.+.......++..++.++.|+++||+|||+.+..+..+..++.+++... .+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~ 90 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----SSLTV 90 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 3445555667666665544 455677778888999999999999999999999999888888887776652 24555
Q ss_pred HHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Q psy3209 450 SYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVL 529 (567)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 529 (567)
.++..++.+++.+. ..+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..+++.++..++..+
T Consensus 91 l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 91 LIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 55666666666665 34444589999999999999999999999999999999999998888998888888777776655
Q ss_pred HHHHhccCCC
Q psy3209 530 FTFFFIFETK 539 (567)
Q Consensus 530 ~~~~~~~~~~ 539 (567)
+..+..||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 4444555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 567 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-17 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-11 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 81.7 bits (200), Expect = 4e-17
Identities = 51/411 (12%), Positives = 116/411 (28%), Gaps = 30/411 (7%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTL----LLTSLVFLTSSLLTIFA 207
+ + ++ + + S G + D+ + L +L + V L +
Sbjct: 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113
Query: 208 QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGG-----ILFS 262
S +F L G +G+G+ + ++ RG + +++ G +LF
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173
Query: 263 LCVGPYIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQN 322
L + + + + ++ + +
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC------------------GLPP 215
Query: 323 ITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTT 382
I E ++ NE + + +++ Y L+ + + + IL ++ T
Sbjct: 216 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275
Query: 383 LPEHHGLIGRTECLI--IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC 440
L E ++ + C + D R F + V I
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335
Query: 441 FYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIAS-IAFALASFL 499
+ + + G ++ EL P +AA + S
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395
Query: 500 INKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550
+ FG F S + V+ + K + Q +Q ++
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 446
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 34/389 (8%), Positives = 92/389 (23%), Gaps = 23/389 (5%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
+ + A + L ++L G + DK G + LL L
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY 271
L + L+ I G+ A + + +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGA---------------------PAVEAFIEKVSRRS 136
Query: 272 QTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV 331
+ V + I + + + + +L T+
Sbjct: 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196
Query: 332 LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIG 391
+ + + +L + L + + + +A+
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256
Query: 392 RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451
T + + + N + + + + L+ +M V +
Sbjct: 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316
Query: 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQIN 510
+ +L + ++ F ++ + LA ++ + +
Sbjct: 317 ILKTLHMFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375
Query: 511 FGLYYMFAFYAICSGINVLFTFFFIFETK 539
G + + + L + F +
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVFTLSGPG 404
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 567 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.44 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.41 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-38 Score=316.62 Aligned_cols=399 Identities=12% Similarity=0.036 Sum_probs=284.9
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
++.+|.++..++++.+..+++...++.+.|.+. | +|+|.++.|++.+++.++++++++++|+++||+|||+++.
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 93 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-----STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 344677777778888888888888888888764 5 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q psy3209 192 LTSLVFLTSSLLTIFAQ----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP 267 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 267 (567)
+++++.+++.+++++++ +++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 99999999999998864 67889999999999999999999999999999999999999999999999999888776
Q ss_pred hh-----hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccc
Q psy3209 268 YI-----QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK 341 (567)
Q Consensus 268 ~l-----~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (567)
.. +||+.|++.+++.++. ++.+++++|+|+.. .....++. ..+..++.. ....++....+
T Consensus 174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~ 239 (447)
T d1pw4a_ 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEY-----------KNDYPDDYN--EKAEQELTAKQ 239 (447)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT-CCCSCTTT-----------CCC---------------CCTH
T ss_pred hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc-ccchhhhh-----------hhhcccchh--hccccccchhh
Confidence 54 7999999988887764 55556677776432 11100000 000000000 00001111122
Q ss_pred ccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy3209 342 SGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGR 419 (567)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 419 (567)
...+..++++..+ ......+......+....+.+.++.+..+. ...+.......+..+++.+++|++.||++|
T Consensus 240 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 240 IFMQYVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp HHHHHTSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHcCchHH-----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccc
Confidence 2344455544332 222233333334567778888888876554 445667777888899999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHH-H
Q psy3209 420 KTLNMLSAFLSSGVMIVLAACF-YWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA-S 497 (567)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~ 497 (567)
++..........+......... ....+.+...+..++.+++... ..+..+.+..|.+|++.||++.|+.+.+.+++ .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~ 393 (447)
T d1pw4a_ 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 393 (447)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 7654444333333222222211 1122344445555555555443 34444588999999999999999999988875 5
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 498 FLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 498 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
.++|.+.|.+.+..|+...|.+.+++.+++.++.+++.+
T Consensus 394 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 394 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999988888888877777766655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.1e-28 Score=240.43 Aligned_cols=382 Identities=11% Similarity=0.005 Sum_probs=252.3
Q ss_pred HHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLT 204 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 204 (567)
.+...+..+...+.+|. +.++ +|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++.++.
T Consensus 16 ~f~~~~~~~~~~~~l~~~l~~~-----~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~ 90 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFFPIWLHDI-----NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34445555566777776 5566 89999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhHHH----HHHHHHHHhccccccccchhhhhhcccCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHH
Q psy3209 205 IFAQSSYW----LFTSRLLSGIGKGVGFTVVPMYIAEITDK--EIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLN 275 (567)
Q Consensus 205 ~~~~~~~~----l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f 275 (567)
.+..+... .++.+++.+.+.+...........+..++ +++.+..+........|..+++.+++.+ +|+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 170 (417)
T d1pv7a_ 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170 (417)
T ss_dssp HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccc
Confidence 88766554 34556666666665555555444444332 2345566677777777888888877776 556666
Q ss_pred HHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
+.......+ .++..++++|+|+.. +.++++. ...+........+..+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSA---TVANAVG------------------------ANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHH------------------------SCCCCCCHHHHHHHTTSSHHH
T ss_pred cchhhHHHHHHHHHHHHhcccccch---hhhhhhh------------------------hhccccccccccccccccccc
Confidence 555555544 556666677776421 1111100 000111111222333333222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
............. .........+........... ...........++..++..+.+++.||.++++.+..+..+.+++
T Consensus 224 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 224 FLSLYVIGVSCTY-DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHH-HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 2222222222211 111111122222222211111 22334555667788899999999999999999999888887777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQINFG 512 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g 512 (567)
.+.+.. ..+.+..++..++.+++.+... +...++..|.+|++.|+++.|+. +....+|.+++|.+.|.+.|..|
T Consensus 303 ~~~~~~----~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 303 IIGSSF----ATSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHT----CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 666554 3355666666667777766544 44458999999999999999986 45677999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhccCCCCCCHHH
Q psy3209 513 LYYMFAFYAICSGINVLFTFFFIFETKGKSFQQ 545 (567)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (567)
+..++++.+++.++..++..+..++++.....+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 378 FQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999888888888777777766665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=6.2e-13 Score=132.43 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=124.4
Q ss_pred HHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy3209 376 LSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFT 454 (567)
Q Consensus 376 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (567)
....| ++++.+.+ .+.++......++..++.++.|+++||+|||+.+..+.++..++.++.+.......+.+..++..
T Consensus 45 ~~~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 45 ALAMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HHHHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 33444 34454444 67778888899999999999999999999999999999988888877766433333455566666
Q ss_pred HHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHH
Q psy3209 455 SLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF-GLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
++.+++.+...... ..++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+.. +|+..+++.+++.++..++.+.
T Consensus 124 ~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence 67777666544444 589999999999999999999999999999999988877654 6778888888877777777666
Q ss_pred hccCC
Q psy3209 534 FIFET 538 (567)
Q Consensus 534 ~~~~~ 538 (567)
+.++.
T Consensus 203 ~~~~~ 207 (447)
T d1pw4a_ 203 MMRDT 207 (447)
T ss_dssp HCCCS
T ss_pred hcccc
Confidence 66543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=3.7e-13 Score=132.10 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=123.8
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++.++.++.+.+++.-++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 45567777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-Hhhccc
Q psy3209 232 PMYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFI-TFMFIP 293 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~~lp 293 (567)
.+++.|.+|+++|++..++. +....+|.+++|.+.+.+ ||++.|++.+++.++..+ ..++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999975 566778888888777665 899999998888776444 444444
|