Psyllid ID: psy3211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHLGS
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccHHHHEEEEHHccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHHHccccc
Coil and Loop (DISEMBL)
msnhmfslyfddksssglqeQEDYLEYYRHDLGINLFHYHwheanpfagnlvgnhrrgeSFYYMHQQMLARQSYGlecgvhlgs
Flexible Loop (DISEMBL)
msnhmfslyfddksssgLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHLGS
Low Complexity Region (SEG)
MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHLGS
Disordered region (IsUnstruct)
**********************DYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVH***
Disordered Region (DISOPRED)
***HMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVH***
Disordered Region (DISEMBL)
MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHLGS
Disordered Region (DISPRO)
*****FSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECGVHLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q27452	693	Phenoloxidase subunit 2 O	N/A	N/A	0.619	0.075	0.563	9e-13
Q25519	695	Phenoloxidase subunit 2 O	N/A	N/A	0.619	0.074	0.545	3e-12
O44249	685	Phenoloxidase subunit 1 O	N/A	N/A	0.761	0.093	0.432	1e-10
Q27451	685	Phenoloxidase subunit 1 O	N/A	N/A	0.702	0.086	0.483	3e-10
Q9V521	684	Phenoloxidase subunit A3	no	N/A	0.702	0.086	0.523	3e-10
Q9W1V6	683	Diphenoloxidase subunit A	no	N/A	0.559	0.068	0.54	4e-09
Q9NFL6	629	Hemocyanin C chain OS=Aph	N/A	N/A	0.761	0.101	0.441	5e-09
Q8I1F6	683	Diphenoloxidase subunit A	N/A	N/A	0.559	0.068	0.54	8e-09
P14750	631	Hemocyanin A chain OS=Aph	N/A	N/A	0.738	0.098	0.414	4e-08
P04253	628	Hemocyanin II OS=Limulus	N/A	N/A	0.773	0.103	0.420	7e-08

>sp|Q27452|PRP2_BOMMO Phenoloxidase subunit 2 OS=Bombyx mori PE=1 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
           E+E  L Y+R D+GINL HYHWH   PF  N   +V   RRGE F+YMHQQ++AR
Sbjct: 195 EEEHRLAYWREDIGINLHHYHWHLVYPFTANDLSIVAKDRRGELFFYMHQQVIAR 249

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone.
Bombyx mori (taxid: 7091)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 8EC: .EC: 1

>sp|Q25519|PRP2_MANSE Phenoloxidase subunit 2 OS=Manduca sexta GN=ppo PE=1 SV=3

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
           E+E  L Y+R DLGINL H+HWH   PF+ +   +V   RRGE F+YMHQQ++AR
Sbjct: 197 EEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIAR 251

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone. Binds to the surface of hemocytes and is involved in hemocyte melanization.

Manduca sexta (taxid: 7130)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|O44249|PRP1_MANSE Phenoloxidase subunit 1 OS=Manduca sexta PE=1 SV=3

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 15  SSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
           ++   E E  + Y+R D+GINL H+HWH   PF     ++V   RRGE FYYMHQQ++ R
Sbjct: 186 TANTTEPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR 245

Query: 72  QSYGLEC 78
            +    C
Sbjct: 246 YNVERMC 252

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone. Binds to the surface of hemocytes and is involved in hemocyte melanization.

Manduca sexta (taxid: 7130)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|Q27451|PRP1_BOMMO Phenoloxidase subunit 1 OS=Bombyx mori PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLARQSYGL 76
           E E  + Y+R D+GINL H+HWH   PF      +V   RRGE FYYMHQQ++AR +   
Sbjct: 191 EPEQRVAYFREDIGINLHHWHWHLVYPFDAADRAIVNKDRRGELFYYMHQQIIARYNVER 250

Query: 77  EC 78
            C
Sbjct: 251 MC 252

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone.

Bombyx mori (taxid: 7091)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|Q9V521|PRPA3_DROME Phenoloxidase subunit A3 OS=Drosophila melanogaster GN=proPo-A3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQM 68
           D ++S L + E  L Y+R DLGINL H+HWH   PF     ++V   RRGE FYYMHQQ+
Sbjct: 183 DYTASDL-DPEHRLWYFREDLGINLHHWHWHLVYPFEASDRSIVAKDRRGELFYYMHQQV 241

Query: 69  LAR 71
           +AR
Sbjct: 242 IAR 244

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinonee.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|Q9W1V6|PRPD3_DROME Diphenoloxidase subunit A3 OS=Drosophila melanogaster GN=Dox-A3 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 25  LEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
           L Y+R DLG+NL H+HWH   P      ++V   RRGE FYYMHQQ++AR
Sbjct: 196 LWYFREDLGVNLHHWHWHLVYPIEAPDRSIVDKDRRGELFYYMHQQIIAR 245

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|Q9NFL6|HCYC_APHCL Hemocyanin C chain OS=Aphonopelma californicum GN=HCC PE=2 SV=3

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 8   LYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNH----RRGESFYY 63
           +  D +++  + + E  L YYR D+GIN  H+HWH   P A + V  H    R+GE F+Y
Sbjct: 145 IIVDMEATGTIMDPEYNLAYYREDIGINAHHWHWHVVYPSAWDSVKMHMRKDRKGELFFY 204

Query: 64  MHQQMLAR 71
           MHQQM AR
Sbjct: 205 MHQQMCAR 212

Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.

Aphonopelma californicum (taxid: 29932)

>sp|Q8I1F6|PRPD3_DROER Diphenoloxidase subunit A3 OS=Drosophila erecta GN=Dox-A3 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 25  LEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
           L Y+R DLG+NL H+HWH   P      ++V   RRGE FYYMHQQ++AR
Sbjct: 196 LWYFREDLGVNLHHWHWHLVYPNTAPDRSIVDKDRRGELFYYMHQQIIAR 245

This is a copper-containing oxidase that functions in the formation of pigments such as melanins and other polyphenolic compounds. Catalyzes the rate-limiting conversions of tyrosine to DOPA, DOPA to DOPA-quinone and possibly 5,6 dihydroxyindole to indole-5'6 quinone.

Drosophila erecta (taxid: 7220)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 8

EC: .

EC: 1

>sp|P14750|HCYA_APHCL Hemocyanin A chain OS=Aphonopelma californicum GN=HCA PE=1 SV=3

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 8   LYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANP------FAGNLVGNHRRGESF 61
           +  D K +  + + E  L Y+R D+G+N  H+HWH   P      F G +    R+GE F
Sbjct: 145 IIVDVKDTGNILDPEYKLAYFREDIGVNAHHWHWHVVYPSTYDPAFFGKV--KDRKGELF 202

Query: 62  YYMHQQMLAR 71
           YYMHQQM AR
Sbjct: 203 YYMHQQMCAR 212

Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.

Aphonopelma californicum (taxid: 29932)

>sp|P04253|HCY2_LIMPO Hemocyanin II OS=Limulus polyphemus PE=1 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 7   SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
            +  D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201

Query: 63  YMHQQMLAR 71
           YMHQQM AR
Sbjct: 202 YMHQQMCAR 210

Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.

Limulus polyphemus (taxid: 6850)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
189238603	754	PREDICTED: similar to pro-phenol oxidase	0.785	0.087	0.521	1e-11
442556963	684	prophenoloxidase [Tenebrio molitor]	0.785	0.096	0.521	1e-11
442556961	684	prophenoloxidase [Tenebrio molitor]	0.785	0.096	0.521	1e-11
270009192	332	hypothetical protein TcasGA2_TC015848 [T	0.785	0.198	0.521	1e-11
4514633	684	prophenoloxidase [Tenebrio molitor]	0.785	0.096	0.521	1e-11
270009214	683	hypothetical protein TcasGA2_TC014907 [T	0.785	0.096	0.521	2e-11
86515394	683	pro-phenol oxidase subunit 2 [Tribolium	0.785	0.096	0.521	2e-11
383863276	693	PREDICTED: phenoloxidase subunit A3-like	0.702	0.085	0.548	2e-11
157956449	693	prophenoloxidase subunit 2 [Bombyx manda	0.619	0.075	0.563	4e-11
112983448	693	phenoloxidase subunit 2 precursor [Bomby	0.619	0.075	0.563	4e-11

>gi|189238603|ref|XP_967179.2| PREDICTED: similar to pro-phenol oxidase subunit 2 [Tribolium castaneum]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 253 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 311

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 312 ARYNFERLC 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442556963|gb|AGC54940.1| prophenoloxidase [Tenebrio molitor]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 183 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 241

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 242 ARYNFERLC 250

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442556961|gb|AGC54939.1| prophenoloxidase [Tenebrio molitor]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 183 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 241

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 242 ARYNFERLC 250

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009192|gb|EFA05640.1| hypothetical protein TcasGA2_TC015848 [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 182 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 240

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 241 ARYNFERLC 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4514633|dbj|BAA75470.1| prophenoloxidase [Tenebrio molitor]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 183 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 241

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 242 ARYNFERLC 250

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009214|gb|EFA05662.1| hypothetical protein TcasGA2_TC014907 [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 182 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 240

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 241 ARYNFERLC 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86515394|ref|NP_001034522.1| pro-phenol oxidase subunit 2 [Tribolium castaneum] gi|70999576|gb|AAX84205.1| pro-phenol oxidase subunit 2 [Tribolium castaneum]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNHRRGESFYYMHQQML 69
           D ++S L+E E  L Y+R DLGINL H+HWH   PF  A  +V  +RRGE FYYMHQQ++
Sbjct: 182 DYTASDLEE-EHRLAYFREDLGINLHHWHWHLVYPFEAAREVVAKNRRGELFYYMHQQII 240

Query: 70  ARQSYGLEC 78
           AR ++   C
Sbjct: 241 ARYNFERLC 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863276|ref|XP_003707107.1| PREDICTED: phenoloxidase subunit A3-like [Megachile rotundata]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN--LVGNHRRGESFYYMHQQML 69
           D ++S L E E  + Y+R D+GINL H+HWH   PF G+  +V   RRGE FYYMHQQM+
Sbjct: 184 DYTASDLDE-EHRVAYWREDIGINLHHWHWHLVYPFEGDVKIVRKDRRGELFYYMHQQMM 242

Query: 70  AR 71
           AR
Sbjct: 243 AR 244

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157956449|gb|ABW06580.1| prophenoloxidase subunit 2 [Bombyx mandarina]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
           E+E  L Y+R D+GINL HYHWH   PF  N   +V   RRGE F+YMHQQ++AR
Sbjct: 195 EEEHRLAYWREDIGINLHHYHWHLVYPFTANDLSIVAKDRRGELFFYMHQQVIAR 249

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983448|ref|NP_001037534.1| phenoloxidase subunit 2 precursor [Bombyx mori] gi|46396763|sp|Q27452.2|PRP2_BOMMO RecName: Full=Phenoloxidase subunit 2; AltName: Full=PO 2; AltName: Full=Tyrosinase 2; Flags: Precursor gi|994751|dbj|BAA08369.1| prophenoloxidase subunit 2 [Bombyx mori] gi|13646950|dbj|BAB41101.1| prophenoloxidase-2f [Bombyx mori]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
           E+E  L Y+R D+GINL HYHWH   PF  N   +V   RRGE F+YMHQQ++AR
Sbjct: 195 EEEHRLAYWREDIGINLHHYHWHLVYPFTANDLSIVAKDRRGELFFYMHQQVIAR 249

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
UNIPROTKB|Q27452	693	Q27452 "Phenoloxidase subunit	0.702	0.085	0.523	6e-12
UNIPROTKB|Q25519	695	ppo "Phenoloxidase subunit 2"	0.702	0.084	0.507	3.4e-11
FB|FBgn0033367	684	proPO45 "prophenoloxidase 45"	0.702	0.086	0.523	5.5e-11
UNIPROTKB|Q27451	685	Q27451 "Phenoloxidase subunit	0.666	0.081	0.524	1.1e-10
UNIPROTKB|O44249	685	O44249 "Phenoloxidase subunit	0.666	0.081	0.491	2.4e-10
FB|FBgn0261362	690	proPO-A1 "prophenol oxidase A1	0.678	0.082	0.491	3.1e-10
UNIPROTKB|Q9NFL6	629	HCC "Hemocyanin C chain" [Apho	0.714	0.095	0.476	9.4e-10
FB|FBgn0261363	683	proPO59 "prophenoloxidase 59"	0.595	0.073	0.528	1.3e-09
UNIPROTKB|P80476	626	P80476 "Hemocyanin AA6 chain"	0.833	0.111	0.407	2.5e-09
UNIPROTKB|P04253	628	P04253 "Hemocyanin II" [Limulu	0.845	0.113	0.434	4.1e-09

UNIPROTKB|Q27452 Q27452 "Phenoloxidase subunit 2" [Bombyx mori (taxid:7091)]

 Score = 172 (65.6 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    12 DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQM 68
             D +++ L+E E  L Y+R D+GINL HYHWH   PF  N   +V   RRGE F+YMHQQ+
Sbjct:   188 DYTATDLEE-EHRLAYWREDIGINLHHYHWHLVYPFTANDLSIVAKDRRGELFFYMHQQV 246

Query:    69 LAR 71
             +AR
Sbjct:   247 IAR 249

GO:0004503 "monophenol monooxygenase activity" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0006952 "defense response" evidence=TAS

UNIPROTKB|Q25519 ppo "Phenoloxidase subunit 2" [Manduca sexta (taxid:7130)]

 Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 32/63 (50%), Positives = 44/63 (69%)

Query:    12 DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQM 68
             D +++ L+E E  L Y+R DLGINL H+HWH   PF+ +   +V   RRGE F+YMHQQ+
Sbjct:   190 DYTATDLEE-EHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQI 248

Query:    69 LAR 71
             +AR
Sbjct:   249 IAR 251

GO:0004503 "monophenol monooxygenase activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=ISS

GO:0005576 "extracellular region" evidence=IDA

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0031404 "chloride ion binding" evidence=ISS

GO:0035008 "positive regulation of melanization defense response" evidence=NAS

FB|FBgn0033367 proPO45 "prophenoloxidase 45" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 33/63 (52%), Positives = 42/63 (66%)

Query:    12 DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQM 68
             D ++S L + E  L Y+R DLGINL H+HWH   PF  +   +V   RRGE FYYMHQQ+
Sbjct:   183 DYTASDL-DPEHRLWYFREDLGINLHHWHWHLVYPFEASDRSIVAKDRRGELFYYMHQQV 241

Query:    69 LAR 71
             +AR
Sbjct:   242 IAR 244

GO:0008152 "metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0042417 "dopamine metabolic process" evidence=IC

GO:0036264 "dopamine monooxygenase activity" evidence=IDA

GO:0036263 "L-DOPA monooxygenase activity" evidence=IDA

UNIPROTKB|Q27451 Q27451 "Phenoloxidase subunit 1" [Bombyx mori (taxid:7091)]

 Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)

Query:    20 EQEDYLEYYRHDLGINLFHYHWHEANPF-AGN--LVGNHRRGESFYYMHQQMLARQSYGL 76
             E E  + Y+R D+GINL H+HWH   PF A +  +V   RRGE FYYMHQQ++AR  Y +
Sbjct:   191 EPEQRVAYFREDIGINLHHWHWHLVYPFDAADRAIVNKDRRGELFYYMHQQIIAR--YNV 248

Query:    77 E 77
             E
Sbjct:   249 E 249

GO:0004503 "monophenol monooxygenase activity" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0006952 "defense response" evidence=TAS

UNIPROTKB|O44249 O44249 "Phenoloxidase subunit 1" [Manduca sexta (taxid:7130)]

 Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query:    20 EQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLARQSYGL 76
             E E  + Y+R D+GINL H+HWH   PF     ++V   RRGE FYYMHQQ++ R  Y +
Sbjct:   191 EPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR--YNV 248

Query:    77 E 77
             E
Sbjct:   249 E 249

GO:0004503 "monophenol monooxygenase activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=ISS

GO:0005576 "extracellular region" evidence=IDA

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0006952 "defense response" evidence=NAS

GO:0031404 "chloride ion binding" evidence=ISS

GO:0035008 "positive regulation of melanization defense response" evidence=IDA

FB|FBgn0261362 proPO-A1 "prophenol oxidase A1" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query:    19 QEQEDYLEYYRHDLGINLFHYHWHEANPFAG--NLVGNHRRGESFYYMHQQMLARQSYGL 76
             +E E  L Y+R D+G+N  H+HWH   P  G   +V   RRGE FYYMH Q+LAR  Y +
Sbjct:   193 REDEQRLAYFREDIGVNSHHWHWHLVYPTTGPTEVVNKDRRGELFYYMHHQILAR--YNV 250

Query:    77 E 77
             E
Sbjct:   251 E 251

GO:0004097 "catechol oxidase activity" evidence=IDA

GO:0004503 "monophenol monooxygenase activity" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0036263 "L-DOPA monooxygenase activity" evidence=IDA

GO:0042417 "dopamine metabolic process" evidence=IC

GO:0036264 "dopamine monooxygenase activity" evidence=IDA

UNIPROTKB|Q9NFL6 HCC "Hemocyanin C chain" [Aphonopelma sp. (taxid:29932)]

 Score = 151 (58.2 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query:    12 DKSSSG-LQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLVGNH----RRGESFYYMHQ 66
             D  ++G + + E  L YYR D+GIN  H+HWH   P A + V  H    R+GE F+YMHQ
Sbjct:   148 DMEATGTIMDPEYNLAYYREDIGINAHHWHWHVVYPSAWDSVKMHMRKDRKGELFFYMHQ 207

Query:    67 QMLAR 71
             QM AR
Sbjct:   208 QMCAR 212

GO:0005507 "copper ion binding" evidence=ISS

GO:0031404 "chloride ion binding" evidence=ISS

FB|FBgn0261363 proPO59 "prophenoloxidase 59" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 28/53 (52%), Positives = 35/53 (66%)

Query:    22 EDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
             E  L Y+R DLG+NL H+HWH   P      ++V   RRGE FYYMHQQ++AR
Sbjct:   193 EHRLWYFREDLGVNLHHWHWHLVYPIEAPDRSIVDKDRRGELFYYMHQQIIAR 245

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0042417 "dopamine metabolic process" evidence=IC

GO:0036264 "dopamine monooxygenase activity" evidence=IDA

GO:0036263 "L-DOPA monooxygenase activity" evidence=IDA

UNIPROTKB|P80476 P80476 "Hemocyanin AA6 chain" [Androctonus australis (taxid:6858)]

 Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 31/76 (40%), Positives = 44/76 (57%)

Query:     2 SNH--MFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN--LVGNH-- 55
             SNH    S+  + + +  + + E  L Y+R D+GIN  H+HWH   P   N  ++G    
Sbjct:   132 SNHPDQQSIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKD 191

Query:    56 RRGESFYYMHQQMLAR 71
             R+GE F+YMHQQM AR
Sbjct:   192 RKGELFFYMHQQMCAR 207

GO:0005507 "copper ion binding" evidence=ISS

GO:0031404 "chloride ion binding" evidence=ISS

UNIPROTKB|P04253 P04253 "Hemocyanin II" [Limulus polyphemus (taxid:6850)]

 Score = 145 (56.1 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 33/76 (43%), Positives = 41/76 (53%)

Query:    11 DDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN--LVGNH--RRGESFYYMHQ 66
             D + +  + + E  L YYR D+GIN  H+HWH   P   N    G    R+GE FYYMHQ
Sbjct:   146 DVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQ 205

Query:    67 QMLARQSYG-LECGVH 81
             QM AR     L  G+H
Sbjct:   206 QMCARYDCERLSNGMH 221

GO:0005344 "oxygen transporter activity" evidence=NAS

GO:0005507 "copper ion binding" evidence=IDA

GO:0005615 "extracellular space" evidence=IC

GO:0015671 "oxygen transport" evidence=NAS

GO:0031404 "chloride ion binding" evidence=IDA

GO:0051259 "protein oligomerization" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
pfam00372	278	pfam00372, Hemocyanin_M, Hemocyanin, copper contai	9e-12

>gnl|CDD|215881 pfam00372, Hemocyanin_M, Hemocyanin, copper containing domain

 Score = 58.1 bits (141), Expect = 9e-12
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 12  DKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF--AGNLVGNH--RRGESFYYMHQQ 67
           + + + L  +E  L Y+  D+G+N +HY+WH   PF    +  G +  RRGE FYYMHQQ
Sbjct: 52  NYTGNILYNEEYRLAYFTEDIGLNTYHYYWHMVYPFWWDDDFYGKNKDRRGELFYYMHQQ 111

Query: 68  MLAR 71
           +LAR
Sbjct: 112 LLAR 115

This family includes arthropod hemocyanins and insect larval storage proteins. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PF00372	278	Hemocyanin_M: Hemocyanin, copper containing domain	100.0

>PF00372 Hemocyanin_M: Hemocyanin, copper containing domain; InterPro: IPR000896 Haemocyanins are copper-containing oxygen transport proteins found in the haemolymph of many invertebrates

Probab=100.00  E-value=5.8e-40  Score=249.14  Aligned_cols=75  Identities=35%  Similarity=0.567  Sum_probs=68.1

Q ss_pred             EEEEecCCCCCCC-CCCceeceehhhhchhHHHHHHHhhCCCCCC----CCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           7 SLYFDDKSSSGLQ-EQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         7 ~~~i~~nyt~~~~-~~e~~LsYFtEDigLN~yy~~~h~~yP~w~~----~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      .++||+|||++.. ++|++||||||||||||||++||++||+|+.    +..|+||||+||||||||||||+|||||||.
T Consensus        46 ~~vi~~nyt~~~~~~~E~~LsYFtEDIGLNs~~~~~h~~yP~w~~~~~~~~~kdRrGElfyY~h~QlLARY~lERlSngL  125 (278)
T PF00372_consen   46 PVVIPANYTGWYTQNPEQKLSYFTEDIGLNSYYYYWHLVYPFWMNGEEYGLNKDRRGELFYYMHQQLLARYYLERLSNGL  125 (278)
T ss_dssp             EEEEESTSSSGTTSSGGGGGHHHHT-HHHHHHHHHHHHHS-TTBSSHHHSSHHTTHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             eeEEeccccccccCChhHhHHHHhhcccHHHHHHHHHhcCcccccccccccccccchhhhHHHHHHHHHHHHHHHhccCC
Confidence            5899999999855 8999999999999999999999999999983    5789999999999999999999999999984

They are divided into 2 main groups, arthropodan and molluscan. These have structurally similar oxygen-binding centres, which are similar to the oxygen-binding centre of tyrosinases [], but their quaternary structures are arranged differently. The arthropodan proteins exist as hexamers comprising 3 heterogeneous subunits (a, b and c) and possess 1 oxygen-binding centre per subunit; and the molluscan proteins exist as cylindrical oligomers of 10 to 20 subunits and possess 7 or 8 oxygen-binding centres per subunit []. Although the proteins have similar amino acid compositions, the only real similarity in their primary sequences is in the region corresponding to the second copper-binding domain, which also shows similarity to the copper-binding domain of tyrosinases []. Larval storage proteins (LSP) [] are proteins from the hemolymph of insects, which may serve as a store of amino acids for synthesis of adult proteins. There are two classes of LSP's, arylphorins, which are rich in aromatic amino acids, and methionine-rich LSP's. LSP's forms hexameric complexes. LSP's are structurally related to arthropods hemocyanins. This entry represents the copper-containg domain that usually occurs in the centre of haemocyanin proteins.; GO: 0005344 oxygen transporter activity, 0006810 transport; PDB: 1HCY_A 1HC1_C 3IXV_E 3IXW_L 3GWJ_F 3HHS_A 1NOL_A 1LLA_A 1OXY_A 1LL1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3hhs_A	694	Crystal Structure Of Manduca Sexta Prophenoloxidase		3e-13
3hhs_B	684	Crystal Structure Of Manduca Sexta Prophenoloxidase		8e-12
1oxy_A	628	Crystallographic Analysis Of Oxygenated And Deoxyge		6e-09
1lla_A	628	Crystal Structure Of Deoxygenated Limulus Polyphemu		6e-09
1ll1_A	628	Hydroxo Bridge Met Form Hemocyanin From Limulus Len		6e-09
3ixv_A	626	Scorpion Hemocyanin Resting State Pseudo Atomic Mod		7e-09

>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase Length = 694

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
           E+E  L Y+R DLGINL H+HWH   PF+ +   +V   RRGE F+YMHQQ++AR
Sbjct: 196 EEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIAR 250

>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase Length = 684

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 15  SSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
           ++   E E  + Y+R D+GINL H+HWH   PF     ++V   RRGE FYYMHQQ++ R
Sbjct: 185 TANTTEPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR 244
Query: 72  QSYGLEC 78
            +    C
Sbjct: 245 YNVERMC 251

>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated States Of Arthropod Hemocyanin Shows Unusual Differences Length = 628

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7   SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
            +  D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63  YMHQQMLAR 71
           YMHQQM AR
Sbjct: 202 YMHQQMCAR 210

>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus Subunit Ii Hemocyanin At 2.18 Angstroms Resolution: Clues For A Mechanism For Allosteric Regulation Length = 628

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7   SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
            +  D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63  YMHQQMLAR 71
           YMHQQM AR
Sbjct: 202 YMHQQMCAR 210

>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus Length = 628

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7   SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
            +  D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63  YMHQQMLAR 71
           YMHQQM AR
Sbjct: 202 YMHQQMCAR 210

>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model Built Cryo-Em Density Map Length = 626

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 7   SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN--LVGNH--RRGESFY 62
           S+  + + +  + + E  L Y+R D+GIN  H+HWH   P   N  ++G    R+GE F+
Sbjct: 139 SIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDRKGELFF 198
Query: 63  YMHQQMLAR 71
           YMHQQM AR
Sbjct: 199 YMHQQMCAR 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3hhs_B	684	Propo-P1, phenoloxidase subunit 1; alpha helix, be	1e-13
3hhs_A	694	Propo-P2, phenoloxidase subunit 2; alpha helix, be	1e-13
1lla_A	628	Hemocyanin (subunit type II); oxygen transport; 2.	3e-13
1hc1_A	657	Arthropodan hemocyanin; oxygen transport; 3.20A {P	7e-13
3gwj_A	674	Arylphorin; mono-glucosylated N-glycan, stability,	2e-12
3ixv_A	626	Hemocyanin AA6 chain; HC, phenolxoidase activity,	4e-12

>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 684

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 22  EDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGLE 77
           E  + Y+R D+GINL H+HWH   PF      +V   RRGE FYYMHQQ++ R  Y +E
Sbjct: 192 EQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR--YNVE 248

>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 694

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGL 76
           E+E  L Y+R DLGINL H+HWH   PF+ +   +V   RRGE F+YMHQQ++AR  Y  
Sbjct: 196 EEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIAR--YNC 253

Query: 77  E 77
           E
Sbjct: 254 E 254

>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A Length = 628

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 9   YFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFYYM 64
             D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FYYM
Sbjct: 144 LVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYM 203

Query: 65  HQQMLARQSYGLE 77
           HQQM AR  Y  E
Sbjct: 204 HQQMCAR--YDCE 214

>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A* Length = 657

 Score = 61.1 bits (148), Expect = 7e-13
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 22  EDYLEYYRHDLGINLFHYHWHEANPFAGNL---VGNHRRGESFYYMHQQMLARQSYGLE 77
           E  + Y+  D+G+N+ H  WH   PF           R+GE F+++H Q+ AR  +  E
Sbjct: 178 EQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTAR--FDFE 234

>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} Length = 674

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 20  EQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYG 75
            +E  L Y+  D+G+N +++ +H   PF            RRGE ++Y + Q+L R  Y 
Sbjct: 198 NEEQRLAYFTEDIGLNAYYFFFHIHLPFWWTAEKYGNLKERRGEMYHYFYDQLLTR--YY 255

Query: 76  LE 77
            E
Sbjct: 256 FE 257

>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A Length = 626

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 1   MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHR 56
                 S+  + + +  + + E  L Y+R D+GIN  H+HWH   P   N         R
Sbjct: 133 NHPDQQSIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDR 192

Query: 57  RGESFYYMHQQMLARQSYGLE 77
           +GE F+YMHQQM AR  Y  E
Sbjct: 193 KGELFFYMHQQMCAR--YDSE 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3ixv_A	626	Hemocyanin AA6 chain; HC, phenolxoidase activity,	100.0
1lla_A	628	Hemocyanin (subunit type II); oxygen transport; 2.	100.0
1hc1_A	657	Arthropodan hemocyanin; oxygen transport; 3.20A {P	100.0
3hhs_A	694	Propo-P2, phenoloxidase subunit 2; alpha helix, be	100.0
3hhs_B	684	Propo-P1, phenoloxidase subunit 1; alpha helix, be	100.0
3gwj_A	674	Arylphorin; mono-glucosylated N-glycan, stability,	100.0

>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A

Probab=100.00  E-value=7.5e-38  Score=257.94  Aligned_cols=76  Identities=34%  Similarity=0.555  Sum_probs=72.1

Q ss_pred             eEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC----CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           6 FSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG----NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         6 ~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~----~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      .+++||+||||+..++|++||||||||||||||||||++||+|+    .+..||||||+||||||||||||+|||||||.
T Consensus       138 ~~~~i~~nyt~~~~~~E~rlaYF~EDiGlNshh~~whl~YP~~~~~~~~~~~kdRrGElfyYmhqQllARY~lERLSNgL  217 (626)
T 3ixv_A          138 QSIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDRKGELFFYMHQQMCARYDSERLSNGL  217 (626)
T ss_dssp             SCEEEETTCCCCCCCGGGGGHHHHTCHHHHHHHHHHHHHSCTTCCHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccEEEeecCCCCCCCccceehhhhccccHHHHHHHHHeeCCcccChhhccCcccccchhHHHHHHHHHHHHhHHhhcCCC
Confidence            46899999999999999999999999999999999999999998    36789999999999999999999999999985

>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A

Probab=100.00  E-value=1.3e-37  Score=256.35  Aligned_cols=75  Identities=39%  Similarity=0.622  Sum_probs=69.6

Q ss_pred             EEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCCC----CCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         7 ~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~~----~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      +++||+||||+..++|++||||||||||||||||||++||+|+.    +..||||||+||||||||||||+|||||||.
T Consensus       142 ~~~i~~~yt~~~~~~E~rlaYf~EDiGlNshh~~whl~yP~~~~~~~~~~~kdRrGElfyY~hqQllARY~lERLsngL  220 (628)
T 1lla_A          142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYDCERLSNGM  220 (628)
T ss_dssp             CEEEEC--CCCCCCGGGGGHHHHTCHHHHHHHHHHHHHSCTTCCHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEeecCCCcCChhhhhhhhhccCChhHHHHHHHhhCCccCchhhccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999999999999999999982    6789999999999999999999999999985

>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*

Probab=100.00  E-value=2.2e-37  Score=255.93  Aligned_cols=75  Identities=25%  Similarity=0.449  Sum_probs=67.3

Q ss_pred             EEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC---CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         7 ~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~---~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      +++||+||||+..++|++||||||||||||||||||++||||+   .+..||||||+||||||||||||+|||||||.
T Consensus       163 ~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~whl~yPfw~~~~~~~~kdRrGElfyY~hqQllARY~lERLsn~L  240 (657)
T 1hc1_A          163 PGTFNVSFTGTKKNREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTARFDFERLSNWL  240 (657)
T ss_dssp             CCCEECCC----CCSSTTSHHHHTCHHHHHHHHHHHHHSCTTCCTTSSSCCSSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CeEEEecCCCCcCChhhhhhhhhhccCcceeeeEEEEecccccchhcCccccccchhHHHHHHHHHHHHHHHHhhCCC
Confidence            5689999999999999999999999999999999999999998   35789999999999999999999999999985

>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}

Probab=100.00  E-value=3.1e-37  Score=256.61  Aligned_cols=77  Identities=42%  Similarity=0.754  Sum_probs=71.9

Q ss_pred             ceEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCC-CC--CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           5 MFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF-AG--NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         5 ~~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~-w~--~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      ...++||+||||+..++|++||||||||||||||||||++||+ |+  .++.||||||+||||||||||||+|||||||.
T Consensus       181 ~~~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~wHl~YP~~~~~~~~~~kDRrGElfyYmHqQllARY~lERLSNgL  260 (694)
T 3hhs_A          181 RTPIIIPRDYTATDLEEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIARYNCERLCNSL  260 (694)
T ss_dssp             CCCEECCSCSSCCTTSGGGGGHHHHTCHHHHHHHHHHHHHSCSCCSSHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccEEEeeccccCCCCchhhhhhhhhccChHHHHHhHhhhcccccccccccccccchhhhHHHHHHHHHHhhhHhhhCCC
Confidence            3578999999999999999999999999999999999999999 56  34689999999999999999999999999985

>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}

Probab=100.00  E-value=3.8e-37  Score=255.67  Aligned_cols=77  Identities=38%  Similarity=0.744  Sum_probs=71.5

Q ss_pred             ceEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCC-CC--CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           5 MFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF-AG--NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         5 ~~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~-w~--~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      ...++||+||||+..++|++||||||||||||||||||++||+ |+  ..+.||||||+||||||||||||+|||||||.
T Consensus       175 ~~~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~whl~yP~~~~~~~~~~kDRrGElfyYmhqQllARY~lERLSNgL  254 (684)
T 3hhs_B          175 RMPVNVPINYTANTTEPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGRYNVERMCNGL  254 (684)
T ss_dssp             CCCEECCSSCSSCTTCGGGGGHHHHTCHHHHHHHHHHHHHSCSSCSSHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEeeccccccCCccceeeeehhccChHHHHHHHHhhcccccccchhcccccchhhhHHHHHHHHHHHhHHhhhCCC
Confidence            3578999999999999999999999999999999999999999 55  23689999999999999999999999999985

>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi}

Probab=100.00  E-value=5.6e-37  Score=254.26  Aligned_cols=76  Identities=24%  Similarity=0.363  Sum_probs=70.7

Q ss_pred             eEEEEecCCCC--CCCCCCceeceehhhhchhHHHHHHHhhCCCCCC----CCCcccchhhhHHHHHHHHHHHhhhhhcC
Q psy3211           6 FSLYFDDKSSS--GLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYGLECG   79 (84)
Q Consensus         6 ~~~~i~~nyt~--~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~~----~~~~~RrGElf~y~hqQllARY~LERlSn   79 (84)
                      .+++||+||||  ...++|++||||||||||||||||||++||+|+.    ++.||||||+||||||||||||+||||||
T Consensus       182 ~~~~i~~nyt~~~~~~~~E~rlaYF~EDIGlNs~h~~whl~yPfw~~~~~~~~~kdRrGElfyYmhqQllARY~lERLSN  261 (674)
T 3gwj_A          182 NHYVYYSNYSNAITYYNEEQRLAYFTEDIGLNAYYFFFHIHLPFWWTAEKYGNLKERRGEMYHYFYDQLLTRYYFERLTN  261 (674)
T ss_dssp             TEEEEECCCGGGTCCSSGGGGGHHHHTCHHHHHHHHHHHHHSCTTBCSGGGTHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceeeeecccccccccCChhHhhhhhhccCCHHHHHHHHHHhCCcccCccccccccccCcchhhHHHHHHHHHHHHHHhcC
Confidence            46899999999  5788999999999999999999999999999982    45699999999999999999999999999


Q ss_pred             CC
Q psy3211          80 VH   81 (84)
Q Consensus        80 ~~   81 (84)
                      |.
T Consensus       262 ~L  263 (674)
T 3gwj_A          262 GL  263 (674)
T ss_dssp             TC
T ss_pred             CC
Confidence            84

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1hc1a2	263	a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny l	1e-14
d1llaa2	270	a.86.1.1 (A:110-379) Arthropod hemocyanin {Horsesh	1e-13

>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]} Length = 263

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Hemocyanin middle domain
domain: Arthropod hemocyanin
species: Spiny lobster (Panulirus interruptus) [TaxId: 6735]

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 20 EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGL 76
           +E  + Y+  D+G+N+ H  WH   PF           R+GE F+++H Q+ AR  +  
Sbjct: 41 NREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTAR--FDF 98

Query: 77 E 77
          E
Sbjct: 99 E 99

>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]} Length = 270

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Hemocyanin middle domain
domain: Arthropod hemocyanin
species: Horseshoe crab (Limulus polyphemus) [TaxId: 6850]

 Score = 61.3 bits (149), Expect = 1e-13
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 9   YFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFYYM 64
             D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FYYM
Sbjct: 35  LVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYM 94

Query: 65  HQQMLAR 71
           HQQM AR
Sbjct: 95  HQQMCAR 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1llaa2	270	Arthropod hemocyanin {Horseshoe crab (Limulus poly	100.0
d1hc1a2	263	Arthropod hemocyanin {Spiny lobster (Panulirus int	100.0

>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Hemocyanin middle domain
domain: Arthropod hemocyanin
species: Horseshoe crab (Limulus polyphemus) [TaxId: 6850]

Probab=100.00  E-value=2.9e-41  Score=253.29  Aligned_cols=76  Identities=37%  Similarity=0.572  Sum_probs=70.3

Q ss_pred             eEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC----CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           6 FSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG----NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         6 ~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~----~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      .+++||+|||++..++|++||||||||||||||+|||++||+|+    .++.||||||+|||+||||||||+|||||||.
T Consensus        32 ~~~~i~~nyt~~~~~~E~~lsYFtEDiGlNsyyyy~h~~yP~w~~~~~~~~~kdRRGElfyy~hqQLLARY~lERLsngL  111 (270)
T d1llaa2          32 SPILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYDCERLSNGM  111 (270)
T ss_dssp             CCEEEEC--CCCCCCGGGGGHHHHTCHHHHHHHHHHHHHSCTTCCHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eeEEEeeccccccCChhhhhhHHHhhcCHHHHHHHHHccCCCcCCccccccccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999999999999998    36789999999999999999999999999984

>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]}

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Hemocyanin middle domain
domain: Arthropod hemocyanin
species: Spiny lobster (Panulirus interruptus) [TaxId: 6735]

Probab=100.00  E-value=7.3e-41  Score=251.17  Aligned_cols=75  Identities=25%  Similarity=0.449  Sum_probs=67.2

Q ss_pred             EEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC---CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211           7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLARQSYGLECGVH   81 (84)
Q Consensus         7 ~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~---~~~~~~RrGElf~y~hqQllARY~LERlSn~~   81 (84)
                      +++|++||||+..++|++||||||||||||||++||++||+|+   .+..||||||+||||||||||||+|||||||.
T Consensus        28 ~~~~~~nyt~~~~n~E~~lsYFtEDiGlN~~~~y~h~~yPfw~~~~~~~~kdRRGElfyy~hqQlLARY~lERLsngL  105 (263)
T d1hc1a2          28 PGTFNVSFTGTKKNREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTARFDFERLSNWL  105 (263)
T ss_dssp             CCCEECCC----CCSSTTSHHHHTCHHHHHHHHHHHHHSCTTCCTTSSSCCSSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CceEEeeeccccCCcceeeeehhhcccHHHHHHHHceeCCcccchhcCcccccccchHHHHHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999999999999999999999998   25789999999999999999999999999985