Psyllid ID: psy3240

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccHHHHcccEEccHHHHHHHccEEEEEccccHHHHHHccHHHHHccccccEEEEccccccccHHHHHHHHHcccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcHHHHHHcccccccccHHEcEEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHcccEEEcHHHHHHHccEEEEEccccHcccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHcccEEEEEEEccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MYRQIYNFIYIDVIKYvstpvscrgewkswapnfmcgpalqnstvgivgcgrigLSVLEKLIPYKVSKFLytsrskkpeadkrgaehtniddlckqsdfiiitsaltpdthhLINRarlesmkpgailintsrgqlvdQEALIDFIADIRVISISMVTNEKHLHRVftlgdsfhkghvSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIrgagldvmypeplpldspllqldncvilphigsaQIETRQEMARITAQNIINtfhnkpmiyevpl
Flexible Loop (DISEMBL)
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSkflytsrskkpeadkrgaehtniddlckQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIintfhnkpmiyevpl
Low Complexity Region (SEG)
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYpeplpldspllqlDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL
Disordered region (IsUnstruct)
**RQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYT****************************************************GAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIY****
Disordered Region (DISOPRED)
*YRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIY*VP*
Disordered Region (DISEMBL)
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS************TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL
Disordered Region (DISPRO)
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q91Z53	328	Glyoxylate reductase/hydr	yes	N/A	0.700	0.585	0.354	8e-30
Q9UBQ7	328	Glyoxylate reductase/hydr	yes	N/A	0.700	0.585	0.346	7e-29
A4W577	324	Glyoxylate/hydroxypyruvat	yes	N/A	0.660	0.558	0.338	2e-27
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	N/A	0.642	0.531	0.348	5e-27
B7LTG7	324	Glyoxylate/hydroxypyruvat	yes	N/A	0.645	0.546	0.327	2e-25
B1L765	332	Glyoxylate reductase OS=K	yes	N/A	0.649	0.536	0.316	3e-25
A1RYE4	339	Glyoxylate reductase OS=T	yes	N/A	0.667	0.539	0.310	3e-25
Q31V71	324	Glyoxylate/hydroxypyruvat	yes	N/A	0.667	0.564	0.323	7e-25
Q8FCF1	324	Glyoxylate/hydroxypyruvat	yes	N/A	0.667	0.564	0.323	1e-24
Q83PR3	324	Glyoxylate/hydroxypyruvat	yes	N/A	0.667	0.564	0.319	3e-24

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 116/251 (46%), Gaps = 59/251 (23%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
           G W SW+P +MCG  L  STVGIVG GRIG ++  +L P+ V +FLYT R  +P EA + 
Sbjct: 136 GGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEF 195

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            AE   I  L  +SDFI                                           
Sbjct: 196 QAEFVPIAQLAAESDFI------------------------------------------- 212

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                  V+S S+  +   L       D F K   +A IFI++  GD V    ++ A   
Sbjct: 213 -------VVSCSLTPDTMGLCS----KDFFQKMKNTA-IFINISRGDVVNQEDLYQA--- 257

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           L + +I  AGLDV  PEPLP   PLL L NCVILPHIGSA  +TR  M+ + A N++   
Sbjct: 258 LASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLAGL 317

Query: 264 HNKPMIYEVPL 274
             + M  E+ L
Sbjct: 318 RGEAMPSELKL 328

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 117/251 (46%), Gaps = 59/251 (23%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR 83
           G W SW P ++CG  L  STVGI+G GRIG ++  +L P+ V +FLYT R  +PE A + 
Sbjct: 136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            AE  +  +L  QS                                              
Sbjct: 196 QAEFVSTPELAAQS---------------------------------------------- 209

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
           DFI    V++ S+    + L       D F K   +A +FI++  GD V    ++ A   
Sbjct: 210 DFI----VVACSLTPATEGLCN----KDFFQKMKETA-VFINISRGDVVNQDDLYQA--- 257

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           L + KI  AGLDV  PEPLP + PLL L NCVILPHIGSA   TR  M+ + A N++   
Sbjct: 258 LASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGL 317

Query: 264 HNKPMIYEVPL 274
             +PM  E+ L
Sbjct: 318 RGEPMPSELKL 328

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|A4W577|GHRB_ENT38 Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 114/242 (47%), Gaps = 61/242 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW KS  P++  G  +   T+GIVG GRIGL++ ++         LY +R    EA++R
Sbjct: 128 GEWTKSIGPDWF-GVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A +  ++ L +++D++ +   LT +THHLI +A  E MK  AI IN  RG +VD++AL
Sbjct: 187 FEARYCELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKAL 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I                           ++  KG + A                      
Sbjct: 247 I---------------------------EALQKGEIHA---------------------- 257

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                    AGLDV   EPLP+DSPLL + N V LPHIGSA  ETR  MA     N+IN 
Sbjct: 258 ---------AGLDVFEQEPLPVDSPLLTMSNVVSLPHIGSATHETRYNMAATAVDNLINA 308

Query: 263 FH 264
            +
Sbjct: 309 LN 310

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 116/241 (48%), Gaps = 65/241 (26%)

Query: 25  GEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           GEWK     W P    G  L+  T+GIVG GRIG ++ ++   + + K +Y SR++KPEA
Sbjct: 129 GEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGM-KIIYYSRTRKPEA 187

Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           ++  GAE+ + + L K+SDFI +   LT +T+H+I    L+ MKP AILINTSRG     
Sbjct: 188 EEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRG----- 242

Query: 140 EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199
            A++D  A I+                                                 
Sbjct: 243 -AVVDTNALIKA------------------------------------------------ 253

Query: 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
               LK   I GAGLDV   EP   +  L +L N V+ PHIGSA  E R+ MA + A+N+
Sbjct: 254 ----LKEGWIAGAGLDVFEEEPY-YNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNL 308

Query: 260 I 260
           I
Sbjct: 309 I 309

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7LTG7|GHRB_ESCF3 Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 111/238 (46%), Gaps = 61/238 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW  S  P++  G  + + T+GIVG GRIG+++ ++         LY +R + P+A++R
Sbjct: 128 GEWTASIGPDWF-GSDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRQHPQAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A + ++D L +++DF+ +   LT +THHL    +   MK  AI IN  RG +VD++AL
Sbjct: 187 FNARYCDLDTLLQEADFVCLILPLTEETHHLFGAEQFAKMKSSAIFINAGRGPVVDEKAL 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I                            +  KG + A                      
Sbjct: 247 I---------------------------SALQKGEIHA---------------------- 257

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
                    AGLDV   EPLP+DSPLL + N V LPHIGSA  ETR  MA     N+I
Sbjct: 258 ---------AGLDVFEREPLPVDSPLLAMPNVVALPHIGSATHETRYNMAACAVDNLI 306

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) (taxid: 585054)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 110/237 (46%), Gaps = 59/237 (24%)

Query: 25  GEWK-SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           G+WK +W P  M G  +   T+GIVG GRIG +V  +   + +    Y S  ++    + 
Sbjct: 129 GKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKEL 188

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G E+  ++ L ++SDF+ +   LT +T+H+I   +L  MK  AIL+NTSRG+        
Sbjct: 189 GVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGK-------- 240

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                        V ++K L++                                      
Sbjct: 241 -------------VVDQKALYKA------------------------------------- 250

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
           LK   I GAGLDV   EP+P D PLL+L+N V+ PH  SA  ETR  MA + A+N+I
Sbjct: 251 LKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLI 307

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 62/245 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK- 82
           G+W K W P F+ GP L+  T+G+VG GRIG++  ++L  + V K LY    ++ + +  
Sbjct: 131 GQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDV-KILYYDIERRWDVETV 189

Query: 83  -RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
               E T++D L ++SD + I   LT +T+HLIN  RL  MK  A LINT+RG +VD EA
Sbjct: 190 IPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEA 249

Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
           L+                            +  +G ++                   +A 
Sbjct: 250 LV---------------------------KALKEGWIAG------------------AAL 264

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           DV + + +             P + PL + DN V+ PHI SA IE RQ MA + A+N+I 
Sbjct: 265 DVFEQEPL-------------PPNHPLTKFDNVVLAPHIASATIEARQRMAELAARNLIA 311

Query: 262 TFHNK 266
               +
Sbjct: 312 VLKGE 316

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q31V71|GHRB_SHIBS Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 110/244 (45%), Gaps = 61/244 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW  S  P++  G  + + T+GIVG GRIG+++ ++         LY +R    EA++R
Sbjct: 128 GEWTASIGPDWY-GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A + ++D L ++SDF+ +   LT +THHL    +   MKP AI IN  RG +VD+ AL
Sbjct: 187 FNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENAL 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I                            +  KG + A                      
Sbjct: 247 I---------------------------AALQKGEIHA---------------------- 257

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                    AGLDV   EPL +DSPLL + N V +PHIGSA  ETR  MA     N+I+ 
Sbjct: 258 ---------AGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDA 308

Query: 263 FHNK 266
              K
Sbjct: 309 LQGK 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Shigella boydii serotype 4 (strain Sb227) (taxid: 300268)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q8FCF1|GHRB_ECOL6 Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ghrB PE=3 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 109/244 (44%), Gaps = 61/244 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW  S  P++  G  + + T+GIVG GRIG+++ ++         LY +R    EA++R
Sbjct: 128 GEWTASIGPDWY-GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A + N+D L ++SDF+ +   LT +THHL    +   MK  AI IN  RG +VD+ AL
Sbjct: 187 FNARYCNLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENAL 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I                            +  KG + A                      
Sbjct: 247 I---------------------------AALQKGEIHA---------------------- 257

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                    AGLDV   EPL +DSPLL + N V +PHIGSA  ETR  MA     N+I+ 
Sbjct: 258 ---------AGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDA 308

Query: 263 FHNK 266
              K
Sbjct: 309 LQGK 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q83PR3|GHRB_SHIFL Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 110/244 (45%), Gaps = 61/244 (25%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW  S  P++  G  + + T+GIVG GRIG+++ +++        LY +R    EA++R
Sbjct: 128 GEWTASIGPDWY-GTDVHHKTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A + ++D L ++SDF+ +   LT +THHL    +   MK  AI IN  RG +VD+ AL
Sbjct: 187 FNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENAL 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I                            +  KG + A                      
Sbjct: 247 I---------------------------AALQKGEIHA---------------------- 257

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                    AGLDV   EPL +DSPLL + N V +PHIGSA  ETR  MA     N+I+ 
Sbjct: 258 ---------AGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDA 308

Query: 263 FHNK 266
              K
Sbjct: 309 LQGK 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Shigella flexneri (taxid: 623)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
91089615	321	PREDICTED: similar to glyoxylate reducta	0.700	0.598	0.4	1e-43
380016588	325	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	0.704	0.593	0.426	3e-43
383847354	363	PREDICTED: glyoxylate reductase/hydroxyp	0.675	0.509	0.422	3e-41
157123811	367	glyoxylate/hydroxypyruvate reductase [Ae	0.693	0.517	0.421	4e-41
442748349	363	Putative glyoxylate/hydroxypyruvate redu	0.693	0.523	0.4	8e-41
307170659	326	Glyoxylate reductase/hydroxypyruvate red	0.678	0.570	0.405	3e-40
345493951	685	PREDICTED: hypothetical protein LOC10011	0.704	0.281	0.394	1e-39
427784185	360	Putative d-3-phosphoglycerate dehydrogen	0.678	0.516	0.402	2e-39
307203139	325	Glyoxylate reductase/hydroxypyruvate red	0.678	0.572	0.381	3e-39
390361171	367	PREDICTED: glyoxylate reductase/hydroxyp	0.700	0.523	0.368	5e-39

>gi|91089615|ref|XP_973278.1| PREDICTED: similar to glyoxylate reductase/hydroxypyruvate reductase [Tribolium castaneum] gi|270011362|gb|EFA07810.1| hypothetical protein TcasGA2_TC005371 [Tribolium castaneum]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 128/250 (51%), Gaps = 58/250 (23%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G WK+WAP +MCGP L  +TVGIVG GRIG  V ++L P+   + LY SRS K EA++ G
Sbjct: 130 GGWKAWAPFWMCGPGLGGATVGIVGFGRIGQEVAKRLKPFNTRQILYHSRSAKKEAEEIG 189

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           A    +D+L  QSDF+++  ALTP+T  + N    + MK  A+ +NTSRG +VDQ+AL+ 
Sbjct: 190 ARKVTLDELLTQSDFVVVCCALTPETKGMFNEGAFKKMKKSAVFVNTSRGAVVDQDALV- 248

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
                               R    G+ +  G                            
Sbjct: 249 --------------------RALQSGEIWGAG---------------------------- 260

Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
                    LDVM PEPLPLD PL  L NCVILPHIGSA IETR +MA +TA NI+    
Sbjct: 261 ---------LDVMTPEPLPLDDPLFGLKNCVILPHIGSACIETRNQMAVLTANNILEALR 311

Query: 265 NKPMIYEVPL 274
              M  E+ L
Sbjct: 312 GGKMPAELIL 321

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016588|ref|XP_003692262.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate reductase/hydroxypyruvate reductase-like [Apis florea]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 135/251 (53%), Gaps = 58/251 (23%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           +GEWK+W+P +MCGP L  ST+GIVG GRIG+ V + L  +  SK LYTSR+ K EA + 
Sbjct: 131 KGEWKAWSPTWMCGPGLSKSTIGIVGLGRIGIQVAKCLKSFNTSKILYTSRNVKQEASEF 190

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G E   +D L ++SDFII+T ALTPDT                        Q+ +Q    
Sbjct: 191 GGEKVKLDILLEKSDFIIVTVALTPDTR-----------------------QMFNQ---- 223

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                                      ++F K   SA IFI++  G+ V    +  A   
Sbjct: 224 ---------------------------NTFKKMKKSA-IFINVSRGEVVDQSALIEA--- 252

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK   I+ AGLDVM PEP+PLDS LL+LDNCVILPHIGSA IETR+EM+ ITA+NII   
Sbjct: 253 LKNGIIKAAGLDVMTPEPIPLDSELLKLDNCVILPHIGSAAIETREEMSIITAKNIIAVL 312

Query: 264 HNKPMIYEVPL 274
              P     PL
Sbjct: 313 KGTPDEMPTPL 323

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847354|ref|XP_003699319.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Megachile rotundata]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 131/244 (53%), Gaps = 59/244 (24%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           +GEW SW P FMCGP+L  STVGIVG GRIG  + + L  + V+K L+TSR+ KPEA   
Sbjct: 170 KGEWTSWGPIFMCGPSLSGSTVGIVGFGRIGTQLAKCLKGFNVAKILFTSRTPKPEASHL 229

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G E    D L + SDF+I T+ALTPDT                        Q+ ++ A  
Sbjct: 230 G-ERVTFDVLLQNSDFVIATTALTPDTR-----------------------QMFNKSA-- 263

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                                        F K   SA IF+++  G+ V    +  A   
Sbjct: 264 -----------------------------FEKMKKSA-IFVNISRGEVVDQPALIEA--- 290

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK  KIR AGLDVM PEP+PLDS LL+LDNCV+LPHIGSA  ETR+EM++ITA+NI+   
Sbjct: 291 LKTGKIRAAGLDVMTPEPIPLDSELLKLDNCVVLPHIGSAATETREEMSKITARNILAVL 350

Query: 264 HNKP 267
           +  P
Sbjct: 351 NGVP 354

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123811|ref|XP_001653924.1| glyoxylate/hydroxypyruvate reductase [Aedes aegypti] gi|108874208|gb|EAT38433.1| AAEL009676-PA [Aedes aegypti]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/249 (42%), Positives = 132/249 (53%), Gaps = 59/249 (23%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
           G WKSW+P +MCG +++NS VGI G GRIG  V +++ P+K ++  +TSR+ K   A+  
Sbjct: 177 GGWKSWSPMWMCGTSIKNSVVGIFGFGRIGQEVAKRIAPFKPAQIQFTSRTDKCLTAEDL 236

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           GA     D+L + SDFIII  + T +T +L N +    MKP AILINTSRG +V      
Sbjct: 237 GATQVPFDELIETSDFIIIACSYTMETANLFNDSVFSRMKPSAILINTSRGGVV------ 290

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                           E+H        D  H                             
Sbjct: 291 ----------------EQH--------DLIH----------------------------A 298

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LKA KI+ AGLDV  PEPLPLDSPLLQ+ N VILPHIGSA +ETR EM+RITA NI+   
Sbjct: 299 LKAGKIQAAGLDVTTPEPLPLDSPLLQMSNVVILPHIGSADVETRTEMSRITACNILAGL 358

Query: 264 HNKPMIYEV 272
               MI EV
Sbjct: 359 KGVKMISEV 367

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442748349|gb|JAA66334.1| Putative glyoxylate/hydroxypyruvate reduct [Ixodes ricinus]

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 127/250 (50%), Gaps = 60/250 (24%)

Query: 25  GEWK--SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82
           G W   SW+P +MCG  ++ +TVG VG G IGL++LE+L  +KVSKFLYTSRS KP A+ 
Sbjct: 171 GAWAQTSWSPMWMCGSEIRGTTVGFVGMGNIGLAILERLKAFKVSKFLYTSRSHKPTAEM 230

Query: 83  RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            GA+ T +D L + SD +I+T  LTP+T  + NR     MK  A +IN SRG +V     
Sbjct: 231 EGAQFTRLDGLLRMSDIVIVTCTLTPETTGMFNREAFSLMKKTASIINISRGAVV----- 285

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
                           ++  L+   T G                                
Sbjct: 286 ----------------DQDALYEALTTG-------------------------------- 297

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                KI  AGLDVM PEPL  D PL++L NCV+LPHIGSA  ETR  MA +TAQNI+  
Sbjct: 298 -----KIASAGLDVMTPEPLAKDHPLVKLPNCVLLPHIGSATTETRTAMAVLTAQNILAA 352

Query: 263 FHNKPMIYEV 272
               PM   V
Sbjct: 353 LEGLPMPASV 362

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170659|gb|EFN62833.1| Glyoxylate reductase/hydroxypyruvate reductase [Camponotus floridanus]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 127/244 (52%), Gaps = 58/244 (23%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           + EWK+W+P +MCG  L   TVGIVG GRIG+ V E L  + ++K LYTSR+ KPEA K 
Sbjct: 132 KNEWKAWSPTWMCGTGLSGKTVGIVGFGRIGIRVAELLKNFNIAKMLYTSRTVKPEASKL 191

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G E    D L K SDF+                                           
Sbjct: 192 GGEKVEFDTLLKNSDFV------------------------------------------- 208

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                  V++I++ +  KHL       ++F +   +A IF++   GD V    + SA   
Sbjct: 209 -------VVTIALTSETKHLFN----AEAFKQMKKTA-IFVNGSRGDIVDQEALISA--- 253

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK + I  AGLDV+ PEP+PLDS LL+LDNCV+LPHIGSA IETR EMARITA+NII   
Sbjct: 254 LKNRTIAAAGLDVVTPEPIPLDSELLKLDNCVVLPHIGSATIETRNEMARITAKNIIAVL 313

Query: 264 HNKP 267
              P
Sbjct: 314 EGIP 317

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493951|ref|XP_001600983.2| PREDICTED: hypothetical protein LOC100116505 [Nasonia vitripennis]

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 135/251 (53%), Gaps = 58/251 (23%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RGEWK+W P +M GP +  S +GIVG GRIGL V E L  + V+K LYTSR++KP A K 
Sbjct: 491 RGEWKAWCPTWMTGPKISGSNIGIVGLGRIGLRVSEYLKSFGVAKILYTSRTEKPAATKL 550

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           GA+  ++D+L K+S                                              
Sbjct: 551 GAQKVDLDELLKES---------------------------------------------- 564

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
           DF+    +++ ++V   KHL +     ++F K   ++ IFI++  G+ V    +  A   
Sbjct: 565 DFV----IVTTALVPETKHLFK----KETFEKMKKNS-IFINISRGEVVHQPSLIEA--- 612

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK   IR AGLDVM PEP+PLD+ LL+LDNCVI+PH+GSA  ETR EM+ ITA+NI+   
Sbjct: 613 LKNGTIRAAGLDVMTPEPIPLDNELLKLDNCVIIPHLGSAAAETRDEMSVITAKNILAVL 672

Query: 264 HNKPMIYEVPL 274
           HNKP     PL
Sbjct: 673 HNKPEEMPAPL 683

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784185|gb|JAA57544.1| Putative d-3-phosphoglycerate dehydrogen [Rhipicephalus pulchellus]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 126/246 (51%), Gaps = 60/246 (24%)

Query: 25  GEWKS--WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82
           GEW S  W+P +MCG  ++ STVGIVG G IG  +LE+L  +KVS+FLY SRS KP A+ 
Sbjct: 168 GEWASAVWSPTWMCGSEIRGSTVGIVGMGNIGFGILERLKAFKVSRFLYYSRSHKPAAET 227

Query: 83  RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            GA+ T  ++L KQSD+II+  ALTP+T  + ++     MK  A LIN            
Sbjct: 228 IGAQFTRFEELLKQSDYIIVCCALTPETTKMFDKEAFSMMKSTASLIN------------ 275

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
                    IS   V +++ L+   + G                                
Sbjct: 276 ---------ISRGPVVDQQALYEALSSG-------------------------------- 294

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                KIR AGLDVM PEPLP D PLL+L NCVI+PHIGSA   TR  MA +TAQNI+  
Sbjct: 295 -----KIRSAGLDVMTPEPLPKDHPLLKLPNCVIIPHIGSATTHTRTAMAVLTAQNILAA 349

Query: 263 FHNKPM 268
                M
Sbjct: 350 LDGLQM 355

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203139|gb|EFN82319.1| Glyoxylate reductase/hydroxypyruvate reductase [Harpegnathos saltator]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/244 (38%), Positives = 129/244 (52%), Gaps = 58/244 (23%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RGEWK+WAP +MCGP L  STVGIVG GRIGL V E L  + ++K LYTSR+ KPEA K 
Sbjct: 131 RGEWKAWAPTWMCGPGLSGSTVGIVGLGRIGLRVGECLKSFNIAKLLYTSRTVKPEASKF 190

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
             E   +++L + SDF+                                           
Sbjct: 191 HGEKVELNELLRDSDFV------------------------------------------- 207

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
                  V++ ++    +H+       ++F +   +A IF++   GD V    +  A   
Sbjct: 208 -------VVTTALTPETRHMFN----AEAFKRMKSTA-IFVNGSRGDVVDQAALIEA--- 252

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK++ I  AGLDV  PEP+PLD+ LL+LDNCV+LPHIGSA ++TR+EM+RITA NI+   
Sbjct: 253 LKSETIAAAGLDVTTPEPIPLDNELLKLDNCVVLPHIGSAAMQTREEMSRITANNILAVL 312

Query: 264 HNKP 267
           +  P
Sbjct: 313 NGTP 316

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390361171|ref|XP_793131.2| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 58/250 (23%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G W +W P ++ GP L NSTVG+VG GRIG+++ ++L P+ V +FLY+  SKK EAD   
Sbjct: 176 GGWGTWKPMWLTGPGLLNSTVGLVGLGRIGMAIAQRLKPFGVKRFLYSGNSKKAEADSLP 235

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           AE    + L K+S F++++ +L   T  L N+   E M   AI +N SRG +V+Q+    
Sbjct: 236 AEFVPFETLVKESGFVVVSCSLNAQTKGLFNKKVFEMMSSNAIFVNISRGAVVNQD---- 291

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
                             LH   T G                                  
Sbjct: 292 -----------------DLHEALTTG---------------------------------- 300

Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
              +IRGAGLDV  PEPLP D PLL+LDNCV+ PHIGSA  ETR  M+ +T +N++    
Sbjct: 301 ---QIRGAGLDVTTPEPLPTDHPLLKLDNCVVFPHIGSASEETRIAMSILTTRNLLAGLM 357

Query: 265 NKPMIYEVPL 274
            + M  EV L
Sbjct: 358 GEEMPEEVQL 367

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
FB|FBgn0037370	362	CG1236 [Drosophila melanogaste	0.507	0.383	0.418	2.4e-28
ZFIN|ZDB-GENE-040426-1847	361	grhprb "glyoxylate reductase/h	0.569	0.432	0.409	3.5e-27
ZFIN|ZDB-GENE-040724-230	327	grhpra "glyoxylate reductase/h	0.569	0.477	0.368	4.5e-27
UNIPROTKB|E1BRZ5	272	LOC420807 "Uncharacterized pro	0.416	0.419	0.420	4e-26
MGI|MGI:1923488	328	Grhpr "glyoxylate reductase/hy	0.569	0.475	0.409	1.4e-25
FB|FBgn0051674	327	CG31674 [Drosophila melanogast	0.478	0.400	0.323	2e-25
UNIPROTKB|F1MB84	328	GRHPR "Uncharacterized protein	0.569	0.475	0.391	7.6e-25
UNIPROTKB|Q9UBQ7	328	GRHPR "Glyoxylate reductase/hy	0.569	0.475	0.385	7.6e-25
UNIPROTKB|F1NX57	345	GRHPR "Uncharacterized protein	0.496	0.394	0.424	1.2e-24
UNIPROTKB|F1PJS0	328	GRHPR "Uncharacterized protein	0.569	0.475	0.385	2e-24

FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/141 (41%), Positives = 92/141 (65%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
             G WKSWAP +MCG  L+ S VG++G GRIG  +  +++P+K ++  YT+RS +P EA   
Sbjct:   170 GGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEITYTTRSLRPKEAAAV 229

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              A H + D++ ++SD I++  ALTP+T  + N    + MKP  ILINT+RG +VDQ+AL 
Sbjct:   230 NARHVDFDEMLRESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQKALY 289

Query:   144 DFIADIRVISISM-VTNEKHL 163
             + +   R+++  + VT  + L
Sbjct:   290 EALKTKRILAAGLDVTTPEPL 310

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1847 grhprb "glyoxylate reductase/hydroxypyruvate reductase b" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 66/161 (40%), Positives = 99/161 (61%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR 83
             G W +W   ++CG  L NSTVGI+G GRIG+++ E+L P+KV KF+YT    + E A+  
Sbjct:   169 GGWGTWRTMWLCGHELANSTVGILGLGRIGVAIAERLKPFKVKKFIYTDVEPRTELANMI 228

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE+ ++D+L KQSDF+ I  ALTP+TH + N      MK  AI INTSRG +V+QE L 
Sbjct:   229 NAEYVSLDELAKQSDFLAICCALTPETHGICNWNLFSKMKKNAIFINTSRGGVVNQEDLY 288

Query:   144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
             + ++   +    + VT  + L   H ++TL +     H+++
Sbjct:   289 EALSTGLIAGAGLDVTTPEPLPTHHPLYTLKNCVILPHIAS 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040724-230 grhpra "glyoxylate reductase/hydroxypyruvate reductase a" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/160 (36%), Positives = 99/160 (61%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
             G W +W P ++CG  L  STVG++G GRIGL++  +L P+ V K LYT R  KPEA++  
Sbjct:   136 GGWSTWKPLWLCGYGLSGSTVGVIGLGRIGLAIARRLKPFGVKKLLYTGRKPKPEAEEVD 195

Query:    85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
              E+  +D L ++SDF++++ +LTPDT  L ++     MK  ++ IN+SRG +V+QE L +
Sbjct:   196 GEYVPLDTLVRESDFVVVSCSLTPDTQGLCDKTFFGKMKKTSVFINSSRGAVVNQEDLFE 255

Query:   145 FIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
              ++  ++ +  + VT+ + L   H + TL +     H+ +
Sbjct:   256 ALSSGQIAAAGLDVTSPEPLPTNHPLLTLKNCVVLPHIGS 295

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|E1BRZ5 LOC420807 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 50/119 (42%), Positives = 79/119 (66%)

Query:    37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR--GAEHTN-IDDL 93
             G  +  +T+GI+G G IG  V E+   +++ K LY +R ++ + ++R  GA +   IDDL
Sbjct:    91 GAEVSGATLGIIGMGTIGYKVAERAKAFEM-KILYHNRKQRNKEEERAVGATYCKKIDDL 149

Query:    94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI 152
              +Q+DF+++   LTP TH LI +  L+ MKP AILIN SRG +VDQ+AL++ + + +VI
Sbjct:   150 LQQADFVMLVVNLTPQTHKLIGKRELQLMKPTAILINISRGLVVDQDALVEALQN-KVI 207

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1923488 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/161 (40%), Positives = 95/161 (59%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
             G W SW+P +MCG  L  STVGIVG GRIG ++  +L P+ V +FLYT R  +P EA + 
Sbjct:   136 GGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEF 195

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE   I  L  +SDFI+++ +LTPDT  L ++   + MK  AI IN SRG +V+QE L 
Sbjct:   196 QAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLY 255

Query:   144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
               +A  ++ +  + VT  + L   H + TL +     H+ +
Sbjct:   256 QALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGS 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0007588 "excretion" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISO

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0048037 "cofactor binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

GO:0070402 "NADPH binding" evidence=ISO

FB|FBgn0051674 CG31674 [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 43/133 (32%), Positives = 78/133 (58%)

Query:    26 EWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPEADKR- 83
             +W     N+M G  +++STVG  G G IG +V ++L+ + + + LYT+R++   + ++R 
Sbjct:   136 KWDKDHLNWMLGQDIRDSTVGFYGFGGIGQAVAKRLMGFDIKRVLYTTRNRVSQDIEERF 195

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              A+  + + L  +SDF+II S LT +T  L N      MK  A+L+N  RG++V+Q+ L 
Sbjct:   196 NAKKVDFETLLAESDFLIIASPLTKETLGLFNATVFNKMKETAVLVNVGRGKIVNQDDLY 255

Query:   144 DFIADIRVISISM 156
             + +   R+ +  +
Sbjct:   256 EALKSNRIFAAGL 268

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1MB84 GRHPR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 63/161 (39%), Positives = 93/161 (57%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
             G W SW P +MCG  L  STVGIVG GRIG ++  +L P+ V +FLYT R  +P EA + 
Sbjct:   136 GGWTSWKPLWMCGHGLSQSTVGIVGLGRIGQAIARRLKPFGVRRFLYTGRQPRPQEAAEF 195

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE  +   L  +SDFI++  +LTP T  L N+   + MK  A+ +N SRG++VDQ+ L 
Sbjct:   196 QAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLY 255

Query:   144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
               +A  ++ +  + VT  + L   H + TL +     H+ +
Sbjct:   256 QALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGS 296

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 62/161 (38%), Positives = 94/161 (58%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR 83
             G W SW P ++CG  L  STVGI+G GRIG ++  +L P+ V +FLYT R  +PE A + 
Sbjct:   136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE  +  +L  QSDFI++  +LTP T  L N+   + MK  A+ IN SRG +V+Q+ L 
Sbjct:   196 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLY 255

Query:   144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
               +A  ++ +  + VT+ + L   H + TL +     H+ +
Sbjct:   256 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 296

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0007588 "excretion" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0051287 "NAD binding" evidence=TAS

GO:0008465 "glycerate dehydrogenase activity" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/139 (42%), Positives = 82/139 (58%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR 83
             G W +W P +MCG  L  STVGI+G GRIG +V  +L P+ V  FLYT    +PE A + 
Sbjct:   153 GGWTTWKPLWMCGYGLSGSTVGIIGLGRIGQAVARRLKPFGVKNFLYTGSRPRPENAAEF 212

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE   +  L ++SDF+++T ALTPDT  + N+     MK  ++ INTSRG +V+QE L 
Sbjct:   213 QAEFVPLTKLAQESDFVVVTCALTPDTQGMCNKDFFSRMKKTSVFINTSRGAVVNQEDLY 272

Query:   144 DFIA--DIRVISISMVTNE 160
             D +    I    + + T E
Sbjct:   273 DALVGGQIAAAGLDVTTPE 291

GO:0051287 "NAD binding" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PJS0 GRHPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 62/161 (38%), Positives = 93/161 (57%)

Query:    25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
             G W SW P +MCG  L  STVGI+G GRIG ++  +L P+ + +FLYT R  +P EA + 
Sbjct:   136 GGWTSWKPLWMCGYGLTQSTVGIIGLGRIGQAIARRLKPFGIQRFLYTGRQPRPQEAAEF 195

Query:    84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              AE  +   L  +SDFII+  +LTP T  L N+   + MK  A+ IN SRG +V+Q+ L 
Sbjct:   196 QAEFVSTPKLAAESDFIIVACSLTPATKGLCNKDFFQQMKTTAVFINISRGDVVNQDDLY 255

Query:   144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
             + +A  ++ +  + VT  + L   H + TL +     H+ +
Sbjct:   256 EALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGS 296

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	274
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	3e-53
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	4e-52
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	8e-52
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	9e-50
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-45
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	8e-42
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-41
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-41
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	8e-41
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	5e-38
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-37
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-36
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	7e-36
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-35
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	7e-35
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-33
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	3e-33
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-33
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-32
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	7e-30
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-29
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-28
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	8e-28
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-27
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	3e-27
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-27
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	9e-27
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	6e-26
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	1e-25
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	3e-25
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	4e-25
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	2e-24
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	3e-24
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	6e-24
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	6e-24
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	7e-24
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-23
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	5e-23
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	8e-22
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	3e-21
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-20
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-20
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	8e-19
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	4e-18
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	5e-18
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-17
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	5e-17
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	8e-17
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	1e-16
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-16
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-16
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-16
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	8e-16
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	7e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	6e-13
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-12
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	5e-12
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-11
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	2e-11
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	3e-11
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	8e-11
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	6e-10
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	7e-10
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	8e-10
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	1e-09
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-09
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-09
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	7e-07
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	1e-05
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	4e-04
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	6e-04
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	0.001
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	0.001

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  174 bits (445), Expect = 3e-53
 Identities = 59/122 (48%), Positives = 84/122 (68%), Gaps = 2/122 (1%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            GEWK W+P  + G  L   T+GIVG GRIG +V  +   + + K LY +RS+KPEA++ 
Sbjct: 126 AGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGM-KILYHNRSRKPEAEEE 184

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            GA + ++D+L  +SDF+ +   LTP+T HLIN  RL  MKP AILINT+RG +VD++AL
Sbjct: 185 LGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDAL 244

Query: 143 ID 144
           ++
Sbjct: 245 VE 246

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  172 bits (438), Expect = 4e-52
 Identities = 83/254 (32%), Positives = 113/254 (44%), Gaps = 64/254 (25%)

Query: 24  RGEWKSWA-PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82
            G W     P+ + G  L+  T+GI+G GRIG +V  +L  + + K LY  RS  PEA+K
Sbjct: 127 EGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPNPEAEK 185

Query: 83  RG-AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
              A + ++D+L  +SD I +   LTP+T HLIN   L  MKPGAIL+NT+RG LVD++A
Sbjct: 186 ELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQA 245

Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
           LID +                             G ++                      
Sbjct: 246 LIDALKS---------------------------GKIAGA------------------GL 260

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNC---VILPHIGSAQIETRQEMARITAQN 258
           D             V   EP   D PLL+LDN    V+ PHI SA  E R+ MA +  +N
Sbjct: 261 D-------------VFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALEN 307

Query: 259 IINTFHNKPMIYEV 272
           +   F       EV
Sbjct: 308 LEAFFDGGVPPNEV 321

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  166 bits (424), Expect = 8e-52
 Identities = 72/212 (33%), Positives = 98/212 (46%), Gaps = 59/212 (27%)

Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           W P+ + G  L   TVGI+G GRIG +V  +L  + + K +   R  K EA+  GA + +
Sbjct: 23  WRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGM-KVIAYDRYPKAEAEALGARYVS 81

Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149
           +D+L  +SD + +   LTP+T HLIN  RL  MKPGAILINT+RG LVD++ALI  +   
Sbjct: 82  LDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKS- 140

Query: 150 RVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKI 209
                                     G ++                              
Sbjct: 141 --------------------------GRIAGA---------------------------- 146

Query: 210 RGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241
               LDV  PEPLP D PLL+L N ++ PHI 
Sbjct: 147 ---ALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  165 bits (421), Expect = 9e-50
 Identities = 79/246 (32%), Positives = 106/246 (43%), Gaps = 63/246 (25%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA--D 81
            G W            L   TVGIVG G IG +V  +L  + V + +Y  R + PEA   
Sbjct: 126 AGRWGRPE--GRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV-EVIYYDRFRDPEAEEK 182

Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
             G  +  +D+L  +SD + +   LTP+T HLI    L +MKPGAILINT+RG       
Sbjct: 183 DLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARG------G 236

Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
           L+D               E+ L                                      
Sbjct: 237 LVD---------------EEALLAA----------------------------------- 246

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L++  + GAGLDV + EPLP D PLL+LDN ++ PHI     E+ Q MA I A+NI  
Sbjct: 247 --LRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVAENIAR 304

Query: 262 TFHNKP 267
               +P
Sbjct: 305 LLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  154 bits (390), Expect = 5e-45
 Identities = 76/251 (30%), Positives = 109/251 (43%), Gaps = 62/251 (24%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RGEW      F  G  L   TVGI+G GRIG +V ++L  + +    Y   S +  A   
Sbjct: 127 RGEWDR--KAFR-GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD 183

Query: 84  GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
           G     ++D+L  ++D + +   LTP+T  LIN   L  MKPGAILIN +RG +VD++AL
Sbjct: 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDAL 243

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           +  +                             G ++                       
Sbjct: 244 LAALDS---------------------------GKIA----------------------- 253

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                   GA LDV   EPLP DSPL  L N ++ PHIG +  E ++ +A I A+NI+  
Sbjct: 254 --------GAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRY 305

Query: 263 FHNKPMIYEVP 273
               P++   P
Sbjct: 306 LAGGPVVNNAP 316

Length = 324

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  145 bits (368), Expect = 8e-42
 Identities = 66/237 (27%), Positives = 98/237 (41%), Gaps = 59/237 (24%)

Query: 24  RGEWKSWAPNF-MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82
            GEW+    N+   GP L+  TVGIVG G IG  V ++L  +     +Y       + + 
Sbjct: 128 DGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEA 187

Query: 83  RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            G +  ++++L K+SD + + + LTP+T  +I       MKP A  INT+R  LVD++AL
Sbjct: 188 DGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDAL 247

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           I+ + +                                      I G             
Sbjct: 248 IEALEE------------------------------------GKIGG------------- 258

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
                    A LDV   EPLP D PLL+LDN  + PHI  A  +  +    I A+ +
Sbjct: 259 ---------AALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEEL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  144 bits (367), Expect = 1e-41
 Identities = 61/241 (25%), Positives = 93/241 (38%), Gaps = 61/241 (25%)

Query: 29  SWAPNFMCGPA-LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-GAE 86
            W          L+  T+G+VG GRIG +V ++   +   + +              G  
Sbjct: 128 GWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGF-RVIAYDPYVPDGVAALGGVR 186

Query: 87  HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
             ++D+L  +SD + +   LTP+T HLI+   L  MKPGA L+NT+RG LVD+ AL   +
Sbjct: 187 VVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARAL 246

Query: 147 ADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKA 206
                                        G ++                           
Sbjct: 247 KS---------------------------GRIA--------------------------- 252

Query: 207 KKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNK 266
               GA LDV+  EP P DSPLL   N ++ PH      E+  E+ R  A+ ++     +
Sbjct: 253 ----GAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGE 308

Query: 267 P 267
           P
Sbjct: 309 P 309

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  144 bits (366), Expect = 2e-41
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 67/244 (27%)

Query: 24  RGEWKSWAPNFMCGPA--LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD 81
            G+W+ +        A   +  T+GI+G G IG ++  K   + + K +Y +RS+ PE  
Sbjct: 137 AGKWRGFLD---LTLAHDPRGKTLGILGLGGIGKAIARKAAAFGM-KIIYHNRSRLPEEL 192

Query: 82  KRG--AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           ++     + ++D+L  QSD + +   LT  T HLIN+     MK G I++NT+RG ++D+
Sbjct: 193 EKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDE 252

Query: 140 EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199
           +AL+D                  L       +S   G V++                   
Sbjct: 253 DALVD-----------------AL-------ES---GKVAS------------------- 266

Query: 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
                       AGLDV   EP   +  LL++ N  +LPH+G+  +ET+++M  +  +NI
Sbjct: 267 ------------AGLDVFENEPEV-NPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENI 313

Query: 260 INTF 263
               
Sbjct: 314 EAFL 317

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  143 bits (362), Expect = 8e-41
 Identities = 69/250 (27%), Positives = 101/250 (40%), Gaps = 60/250 (24%)

Query: 23  CRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82
             G    W      G  L   TVGIVG GRIG +V+E L P+ +   +Y       EA  
Sbjct: 132 RAGRDWGWPTRRG-GRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAA 190

Query: 83  RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            G E  ++D+L  +SD + + + LTP+T  +I+   L  M+ GA  INT+RG LVD+ AL
Sbjct: 191 LGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAAL 250

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           +  +                             G + A                   A D
Sbjct: 251 LAELR---------------------------SGRLRA-------------------ALD 264

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
           V               PEPLP DSPL  L N ++ PHI  +  + R+ +       +   
Sbjct: 265 VT-------------DPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDELERF 311

Query: 263 FHNKPMIYEV 272
              +P+++EV
Sbjct: 312 LAGEPLLHEV 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  135 bits (342), Expect = 5e-38
 Identities = 69/240 (28%), Positives = 100/240 (41%), Gaps = 54/240 (22%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G++  W P F  G  L   TVGI+G G +G ++  +L  +     LY       +A+++
Sbjct: 127 SGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLSGFGA-TLLYYDPHPLDQAEEQ 184

Query: 84  --GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
                   +D+L + SDF+++   LTPDT HLIN   L  MKPGA+L+N  RG +VD+ A
Sbjct: 185 ALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAA 244

Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
           + + +               HL                             G Y    A+
Sbjct: 245 VAEAL------------KSGHL-----------------------------GGY----AA 259

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           DV + +           P+ L     L Q D  V  PHIGSA  E R E+    A NI+ 
Sbjct: 260 DVFEMEDWARPDRPRSIPQEL-----LDQHDRTVFTPHIGSAVDEVRLEIELEAALNILQ 314

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  134 bits (339), Expect = 1e-37
 Identities = 73/246 (29%), Positives = 106/246 (43%), Gaps = 67/246 (27%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE-A 80
            G+W      FM G  L+  T+GIVG GRIG  V  +   +  KV   L        E A
Sbjct: 123 AGKWDRKK--FM-GVELRGKTLGIVGLGRIGREVARRARAFGMKV---LAYDPYISAERA 176

Query: 81  DKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
              G E  ++D+L  ++DFI + + LTP+T  LIN   L  MKPGAILINT+RG +VD+ 
Sbjct: 177 AAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEA 236

Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
           AL D +                             G ++                   +A
Sbjct: 237 ALADALKS---------------------------GKIAG------------------AA 251

Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
            DV +              EP P DSPLL L N ++ PH+G++  E ++ +A   A+ ++
Sbjct: 252 LDVFE-------------QEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVL 298

Query: 261 NTFHNK 266
                +
Sbjct: 299 AVLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (331), Expect = 2e-36
 Identities = 72/223 (32%), Positives = 95/223 (42%), Gaps = 67/223 (30%)

Query: 40  LQNSTVGIVGCGRIGLSV--LEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQS 97
           L   T+GI+G G IG +V  + +    KV   L+  R   P        + ++D+L  QS
Sbjct: 145 LAGKTLGIIGYGNIGQAVARIARAFGMKV---LFAERKGAPP---LREGYVSLDELLAQS 198

Query: 98  DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV 157
           D I +   LTP+T +LIN   L  MKPGAILINT+RG       L+D             
Sbjct: 199 DVISLHCPLTPETRNLINAEELAKMKPGAILINTARG------GLVD------------- 239

Query: 158 TNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVM 217
             E+ L                                     +D L + KI GAGLDV+
Sbjct: 240 --EQAL-------------------------------------ADALNSGKIAGAGLDVL 260

Query: 218 YPEPLPLDSPLLQ-LDNCVILPHIGSAQIETRQEMARITAQNI 259
             EP   D+PLL+   N +I PHI  A  E RQ +  I   NI
Sbjct: 261 SQEPPRADNPLLKAAPNLIITPHIAWASREARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  129 bits (327), Expect = 7e-36
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 2/116 (1%)

Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-GAEHT 88
           W      G  L+  TVGIVG GRIG  V ++L  + + K LY  R++KPE ++  G    
Sbjct: 128 WLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGM-KVLYYDRTRKPEPEEDLGFRVV 186

Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           ++D+L  QSD +++   LTP+T HLIN   L  MKPGA+L+NT+RG LVD++AL+ 
Sbjct: 187 SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLR 242

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (324), Expect = 2e-35
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 5/121 (4%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G W     +   G  L   T+GI+G GRIG +V  +L  + +    Y     +  A + 
Sbjct: 129 AGGW-----DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEH 183

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G E  ++++L K+SDFI +   LTP+T HLIN A L  MKPGAILINT+RG LVD+EAL 
Sbjct: 184 GVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALY 243

Query: 144 D 144
           +
Sbjct: 244 E 244

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  127 bits (321), Expect = 7e-35
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 63/265 (23%)

Query: 11  IDVIKYVSTPVSC--RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSK 68
           + V++ ++        G+W   A NF+ G  L   TVGI+G G IG  V E L     +K
Sbjct: 116 LTVLRKINQASEAVKEGKWTERA-NFV-GHELSGKTVGIIGYGNIGSRVAEILKEGFNAK 173

Query: 69  FLYTSRSKKPEA-DKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAI 127
            L        E   K+GA+  ++++L  +SD I + + LT +T+H+IN      MK G I
Sbjct: 174 VLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVI 233

Query: 128 LINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMI 187
           L+NT+RG+L+D+EALI+ +                             G ++        
Sbjct: 234 LVNTARGELIDEEALIEALK---------------------------SGKIAGA------ 260

Query: 188 MGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIET 247
                         DVL+              EP+  D PLL  +N VI PHIG+   E+
Sbjct: 261 ------------GLDVLEE-------------EPIKADHPLLHYENVVITPHIGAYTYES 295

Query: 248 RQEMARITAQNIINTFHNKPMIYEV 272
              M      +I +    K     +
Sbjct: 296 LYGMGEKVVDDIEDFLAGKEPKGIL 320

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  123 bits (311), Expect = 2e-33
 Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 3/127 (2%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG +  WAP F  G  L   T+GI+G GRIG +V  +   + + K LY +R +  E  ++
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGM-KILYYNRHRLSEETEK 184

Query: 84  --GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
             GA + ++D+L K+SDF+ + +  TP+THHLI+ A  + MKP A LIN +RG LVD++A
Sbjct: 185 ELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKA 244

Query: 142 LIDFIAD 148
           L+D +  
Sbjct: 245 LVDALKT 251

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  122 bits (309), Expect = 3e-33
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 64/236 (27%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G W      F     +    VGIVG GRIG ++  +L  + + +  Y  R  KP+   R
Sbjct: 125 AGRWP--KGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGM-EIAYHGRRPKPDVPYR 181

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              + ++ +L  +SD +++     P T HL+N   LE++ P  +L+N +RG       ++
Sbjct: 182 --YYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGS------VV 233

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
           D               E  L              ++A                       
Sbjct: 234 D---------------EAAL--------------IAA----------------------- 241

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
           L+  +I GAGLDV   EP    + LL LDN V+ PHI SA +ETR+ M  +   N+
Sbjct: 242 LQEGRIAGAGLDVFENEPNV-PAALLDLDNVVLTPHIASATVETRRAMGDLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  123 bits (310), Expect = 3e-33
 Identities = 73/241 (30%), Positives = 109/241 (45%), Gaps = 65/241 (26%)

Query: 25  GEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           GEWK    +W P    G  +   T+GI+G GRIG +V  +   + + + LY SR++KPEA
Sbjct: 129 GEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPEA 187

Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           +K  GAE+  +++L ++SDF+ +   LT +T+H+I               N  R +L+  
Sbjct: 188 EKELGAEYRPLEELLRESDFVSLHVPLTKETYHMI---------------NEERLKLMKP 232

Query: 140 EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199
            A++   A  +V+                                     DT  +     
Sbjct: 233 TAILVNTARGKVV-------------------------------------DTKALV---- 251

Query: 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
               LK   I GAGLDV   EP   +  L  L N V+ PHIGSA  E R+ MA + A+N+
Sbjct: 252 --KALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENL 308

Query: 260 I 260
           I
Sbjct: 309 I 309

Length = 333

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  124 bits (315), Expect = 1e-32
 Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 78/251 (31%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSV------LE-KLIPYKVSKFLYTSRSK 76
           G+W +     FM G  L   T+GI+G GRIG  V         K+I Y      Y S  +
Sbjct: 126 GKWERK---KFM-GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDP----YISPER 177

Query: 77  KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
              A + G E  ++D+L  ++DFI + + LTP+T  LI    L  MKPG  +IN +RG +
Sbjct: 178 ---AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGI 234

Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF 196
           +D+ AL + +                             G V                  
Sbjct: 235 IDEAALAEALKS---------------------------GKV------------------ 249

Query: 197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITA 256
                         GA LDV   EP   DSPL +L N V+ PH+G++  E ++ +A   A
Sbjct: 250 -------------AGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVA 295

Query: 257 QNIINTFHNKP 267
           + +I+     P
Sbjct: 296 EQVIDALRGGP 306

Length = 526

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  113 bits (286), Expect = 7e-30
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 61/225 (27%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSD 98
           L+  T+GI+G GRIG  V +      +   +      K E A + G +  ++++L K SD
Sbjct: 137 LRGKTLGIIGFGRIGREVAKIARALGM-NVIAYDPYPKDEQAVELGVKTVSLEELLKNSD 195

Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
           FI +   LTP+T H+IN+  LE MK GAI+INTSRG ++D+EAL++ +            
Sbjct: 196 FISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKS---------- 245

Query: 159 NEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMY 218
                            G ++                   +A DV              +
Sbjct: 246 -----------------GKLA------------------GAALDV--------------F 256

Query: 219 PEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
               P  S LL+L N  + PHIG++  E ++ +    A  II   
Sbjct: 257 ENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  113 bits (285), Expect = 1e-29
 Identities = 36/64 (56%), Positives = 43/64 (67%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           + LK+ KI GAGLDV  PEPLP D PLL L N V+LPHIGSA +ETR  MA + A N++ 
Sbjct: 246 EALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAELAADNLLA 305

Query: 262 TFHN 265
               
Sbjct: 306 VLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  113 bits (285), Expect = 1e-28
 Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 63/250 (25%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            GEW   A  FM G  L   T+G++G GRIG  V ++   + +    Y        A++ 
Sbjct: 123 EGEWDRKA--FM-GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQL 179

Query: 84  GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
           G E   ++D+L  ++DFI + + LTP+T  LI    L  MK G I++N +RG ++D+ AL
Sbjct: 180 GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
            + +                            +GHV                        
Sbjct: 240 YEAL---------------------------EEGHV------------------------ 248

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                  R A LDV   EP P D+PL  LDN +  PH+G++  E ++ +A   A+ +++ 
Sbjct: 249 -------RAAALDVFEKEP-PTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDA 300

Query: 263 FHNKPMIYEV 272
               P+   V
Sbjct: 301 LKGLPVPNAV 310

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  108 bits (273), Expect = 8e-28
 Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 19/123 (15%)

Query: 33  NF----MCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPEAD 81
           NF    + G  L   TVG++G G+IG +          +++ Y      Y +    PE  
Sbjct: 131 NFSLDGLLGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDP----YPN----PELA 182

Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
           K G E+ ++D+L  +SD I +   LTP+THHLIN   +  MK G +LINTSRG L+D +A
Sbjct: 183 KLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKA 242

Query: 142 LID 144
           LI+
Sbjct: 243 LIE 245

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  107 bits (270), Expect = 2e-27
 Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 3/121 (2%)

Query: 25  GEW-KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           GEW  S  P++  G  + + T+GIVG GRIG+++ ++         LY +R    EA++R
Sbjct: 128 GEWTASIGPDWF-GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEER 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             A + ++D L ++SDF+ I   LT +THHL    +   MK  AI IN  RG +VD+ AL
Sbjct: 187 FNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENAL 246

Query: 143 I 143
           I
Sbjct: 247 I 247

Length = 323

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  107 bits (269), Expect = 3e-27
 Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 62/241 (25%)

Query: 28  KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPEA 80
              A     G  L++ TVG+VG G+IG +V +       K+I Y   +         PE 
Sbjct: 131 LQDAGVI--GRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFR--------NPEL 180

Query: 81  DKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
           + +G ++ ++++L K SD I +   LTP+ HH+IN    + MK G I+INT+RG LVD E
Sbjct: 181 EDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTE 240

Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
           ALI+ +                        DS   G +                      
Sbjct: 241 ALIEAL------------------------DS---GKIFGA------------------G 255

Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
            DVL+ +                L++ L +  N +I PH      +  + M  I+ +NI+
Sbjct: 256 LDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISCENIV 315

Query: 261 N 261
           +
Sbjct: 316 D 316

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  107 bits (269), Expect = 3e-27
 Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 10/127 (7%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF----LYTSRSKKPE 79
           R E   ++   + G  L+N TVG++G GRIG +V++ L     S F    L        E
Sbjct: 125 RAEVNDYSLGGLQGRELRNLTVGVIGTGRIGQAVIKNL-----SGFGCKILAYDPYPNEE 179

Query: 80  ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
             K  AE+ ++D L K+SD I + + LT +T+HLIN+  +  MK G I+INT+RG+L+D 
Sbjct: 180 VKK-YAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 140 EALIDFI 146
           EALI+ +
Sbjct: 239 EALIEGL 245

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  107 bits (268), Expect = 9e-27
 Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
           L+  TVGIVG GRIGL+VL +L P+ V K  YT R + PE  ++      H + D L   
Sbjct: 190 LEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSV 248

Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            D + I   L P+T HL +   L  MK G+ L+NT+RG++VD++A++
Sbjct: 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVV 295

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  103 bits (258), Expect = 6e-26
 Identities = 55/231 (23%), Positives = 86/231 (37%), Gaps = 67/231 (29%)

Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
            W P     P+L +  V IVG G IG ++  +L P++V      +R+ +P     G +  
Sbjct: 121 RWEPRRT--PSLADRRVLIVGYGSIGRAIERRLAPFEVR-VTRVARTARPGEQVHGIDE- 176

Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
            +  L  ++D +++   LT +T  L++   L  M  GA+L+N +RG +VD +AL+     
Sbjct: 177 -LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALV----- 230

Query: 149 IRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKK 208
                         L            G + A                            
Sbjct: 231 ------------AELAS----------GRLRA---------------------------- 240

Query: 209 IRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG--SAQIETRQEMARITAQ 257
                LDV  PEPLP   PL      +I PH+G  +     R   A +  Q
Sbjct: 241 ----ALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAY-ALVRRQ 286

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  102 bits (257), Expect = 1e-25
 Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
            WAP  + G  +++ TVGI+G GRIG S   K+     +K +       PE +K    + 
Sbjct: 133 RWAPGLI-GREIRDLTVGIIGTGRIG-SAAAKIFKGFGAKVIAYDPYPNPELEKFLLYYD 190

Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
           +++DL KQ+D I +   LT + HHLIN      MK GAIL+N +RG LVD +ALID +
Sbjct: 191 SLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDAL 248

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  101 bits (255), Expect = 2e-25
 Identities = 48/115 (41%), Positives = 63/115 (54%), Gaps = 15/115 (13%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           G  L   TVGIVG G IGL V         K++ Y        SRS+K EA   G E+ +
Sbjct: 139 GRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAY--------SRSEKEEAKALGIEYVS 190

Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           +D+L  +SD + +   L  +T  LI + +L  MK  AILINT+RG +VD EAL D
Sbjct: 191 LDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALAD 245

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  102 bits (256), Expect = 3e-25
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
           L+  TVG VG GRIGL VL +L P+ V   LY  R + PE  ++      H +++D+  +
Sbjct: 160 LEGKTVGTVGAGRIGLRVLRRLKPFDV-HLLYYDRHRLPEEVEKELGLTRHADLEDMVSK 218

Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
            D + I   L P+T  L N+  L  MK GA L+NT+RG++ D+EA+ +
Sbjct: 219 CDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAE 266

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  101 bits (253), Expect = 4e-25
 Identities = 41/122 (33%), Positives = 62/122 (50%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG W   A        L+  TVGI+G G IG  +   L  + +     +   K+ E    
Sbjct: 119 RGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADF 178

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
               +++D+  +Q+D +++   LT  T  LI  A L +MKPGAIL+N  RG +VD+EAL 
Sbjct: 179 VGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALY 238

Query: 144 DF 145
           + 
Sbjct: 239 EA 240

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 3/113 (2%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSD 98
           L  ST+GIVG G IG ++  + +   + + L   RS +P  D  G E   ++ +L  +SD
Sbjct: 133 LAGSTLGIVGFGAIGQALARRALALGM-RVLALRRSGRPS-DVPGVEAAADLAELFARSD 190

Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
            +++ + LTP+T HLIN   L   KPG  LIN +RG LVDQEAL++ +   R+
Sbjct: 191 HLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRI 243

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 60/249 (24%), Positives = 89/249 (35%), Gaps = 58/249 (23%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G+WK   P    G  L   T+G++G G IG  +   +        +       PE  + 
Sbjct: 121 AGDWKKGGPI---GLELYGKTLGVIGGGGIG-GIGAAIAKALGMGVVAYDPYPNPERAEE 176

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G     + DL               ++  LIN A   +MK G I+IN +RG L D  A+ 
Sbjct: 177 GGVEVLLLDLLLLDL---------KESDDLINLAPPTTMKTGHIIINEARGMLKDAVAIN 227

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
           +      VI                                     +   +       D 
Sbjct: 228 N-ARGGGVI-------------------------------------EEAAL-------DA 242

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           L  + I  A LDV+  EP P++SPLL L N ++ PHI  A  E ++ MA   A+N++   
Sbjct: 243 LLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLLAFL 302

Query: 264 HNKPMIYEV 272
                   V
Sbjct: 303 KGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 98.0 bits (245), Expect = 6e-24
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 28  KSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGA 85
           + W         L   TV IVG G IG  +  +   +  +V       RS +P       
Sbjct: 121 RRWQRRGPVRE-LAGKTVLIVGLGDIGREIARRAKAFGMRVIG---VRRSGRPAPPVVDE 176

Query: 86  EHT--NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            +T   +D+L  ++D+++    LTP+T  L N  R  +MKPGA+LIN  RG +VD++ALI
Sbjct: 177 VYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALI 236

Query: 144 D 144
           +
Sbjct: 237 E 237

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 97.6 bits (244), Expect = 6e-24
 Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 72/222 (32%)

Query: 44  TVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKR---GAEHTNIDDLCKQSD 98
            VG++G G +G +V  +L    + VS +   SRS K         G E   +D    Q+D
Sbjct: 134 RVGVLGLGELGAAVARRLAALGFPVSGW---SRSPKDIEGVTCFHGEEG--LDAFLAQTD 188

Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            ++    LTP+T  ++N   L  +  GA LIN  RG  + +  L+  +            
Sbjct: 189 ILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAAL------------ 236

Query: 159 NEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMY 218
                       DS   GH+S                               GA LDV  
Sbjct: 237 ------------DS---GHLS-------------------------------GAVLDVFE 250

Query: 219 PEPLPLDSPLLQLDNCVILPHIGS-AQIETRQEMARITAQNI 259
            EPLP D PL +     + PHI +    ++    A   A+NI
Sbjct: 251 QEPLPADHPLWRHPRVTVTPHIAAITDPDSA---AAQVAENI 289

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 98.1 bits (245), Expect = 7e-24
 Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 38/220 (17%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           L   T+G+VG GRIG  V      + +    Y     +  A++ G  + ++++L ++SD 
Sbjct: 137 LAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVPDEELAERLGFRYVSLEELLQESDI 196

Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTN 159
           I +    TP THHLINR     MKPGA+LINT+RG +VD EAL+                
Sbjct: 197 ISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRA-------------- 242

Query: 160 EKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP 219
                          +G ++             G+  +     + +  ++    +     
Sbjct: 243 -------------LKEGKLAG-----------AGLDVLEQEEVLREEAELFREDVSPEDL 278

Query: 220 EPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
           + L  D  LL+  N +I PH+     E  + +   T +NI
Sbjct: 279 KKLLADHALLRKPNVIITPHVAYNTKEALERILDTTVENI 318

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 96.1 bits (240), Expect = 3e-23
 Identities = 61/212 (28%), Positives = 83/212 (39%), Gaps = 61/212 (28%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPEADKRGAEHTNIDDLCKQSD 98
           L   T+  +G G IG  + ++L  + +    + TS       DK       +D++ K++D
Sbjct: 133 LYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL-EELDEVLKEAD 191

Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            ++    LT +THHL + A  E MK GA+ IN  RG  V                     
Sbjct: 192 IVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSV--------------------- 230

Query: 159 NEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMY 218
           +E  L                                      + LK K+IRGA LDV  
Sbjct: 231 DEDALI-------------------------------------EALKNKQIRGAALDVFE 253

Query: 219 PEPLPLDSPLLQLDNCVILPHIGSAQIETRQE 250
            EPLP DSPL  LDN +I PHI S   E   E
Sbjct: 254 EEPLPKDSPLWDLDNVLITPHI-SGVSEHFNE 284

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 95.3 bits (238), Expect = 5e-23
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 9/117 (7%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAEH----TNI 90
           G  L+  T+G++G G IG  V    +    KV  +         EA  + +      T++
Sbjct: 130 GTELRGKTLGVIGLGNIGRLVANAALALGMKVIGY---DPYLSVEAAWKLSVEVQRVTSL 186

Query: 91  DDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
           ++L   +D+I +   LT +T  LIN   L  MKPGAIL+N +RG++VD+EAL++ + 
Sbjct: 187 EELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALD 243

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 91.9 bits (229), Expect = 8e-22
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 8/109 (7%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCK--- 95
           L+ STV IVG G IG +++  L P+   K +  +RS +P     GA+ T   D L +   
Sbjct: 123 LRGSTVAIVGAGGIGRALIPLLAPFGA-KVIAVNRSGRP---VEGADETVPADRLDEVWP 178

Query: 96  QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
            +D +++ + LTP+T HL++ A L +MKP A L+N +RG LVD +AL+D
Sbjct: 179 DADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVD 227

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 90.3 bits (225), Expect = 3e-21
 Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 70/225 (31%)

Query: 44  TVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
           T+GI+G G IG  LSVL + +  +V    Y    K P  + R      +++L  ++DF+ 
Sbjct: 142 TLGIIGYGHIGSQLSVLAEALGMRV--IFYDIAEKLPLGNARQVSS--LEELLAEADFVT 197

Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK 161
           +    TP T ++I    +  MK GAILIN SRG +VD +AL + +               
Sbjct: 198 LHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEAL------------RSG 245

Query: 162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP-E 220
           HL                                               GA +DV +P E
Sbjct: 246 HLA----------------------------------------------GAAVDV-FPEE 258

Query: 221 PL----PLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           P     P  SPL  L N ++ PHIG +  E ++ +    A  ++ 
Sbjct: 259 PASNGEPFSSPLQGLPNVILTPHIGGSTEEAQENIGLEVAGKLVK 303

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 66/253 (26%), Positives = 94/253 (37%), Gaps = 76/253 (30%)

Query: 24  RGEWKSWAPNFMCGP-----ALQNSTVGIVGCGRIGLSV--LEKLIPYKVSKFLYTSRSK 76
            G W+  +  F C        L+  T+G++G G +G +V  L +    +V   L      
Sbjct: 127 AGRWQQ-SSQF-CLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRV---LIGQLPG 181

Query: 77  KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
           +P    R      +D+L  Q D + +   LT  T HLI    L  MKPGA+LINT+RG L
Sbjct: 182 RPARPDR----LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237

Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF 196
           VD++AL                            D+   GH+                  
Sbjct: 238 VDEQALA---------------------------DALRSGHLGG---------------- 254

Query: 197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLD--NCVILPHIGSAQIETRQEMARI 254
             +A+DVL               EP    +PLL  D    ++ PH      E RQ +   
Sbjct: 255 --AATDVLSV-------------EPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQ 299

Query: 255 TAQNIINTFHNKP 267
            A+N    F  KP
Sbjct: 300 LAENARAFFAGKP 312

Length = 317

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 65/223 (29%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           ++    GI+G G IG  V  K+     +K +Y S S K        E  ++++L K SD 
Sbjct: 143 IKGKKWGIIGLGTIGKRV-AKIAQAFGAKVVYYSTSGK--NKNEEYERVSLEELLKTSDI 199

Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTN 159
           I I + L   T +LI    L+ +K GAILIN  RG +V                     N
Sbjct: 200 ISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIV---------------------N 238

Query: 160 EKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP 219
           EK L +                                      L  K I  AGLDV+  
Sbjct: 239 EKDLAKA-------------------------------------LDEKDI-YAGLDVLEK 260

Query: 220 EPLPLDSPLLQL---DNCVILPHIGSAQIETRQEMARITAQNI 259
           EP+  + PLL +   +  +I PHI  A  E R+ +     +NI
Sbjct: 261 EPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 83.8 bits (208), Expect = 8e-19
 Identities = 29/57 (50%), Positives = 36/57 (63%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
           LK+ KI GA LDV  PEPLP D PLL+L N ++ PHI     E R+ MA I  +N+ 
Sbjct: 244 LKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 81.8 bits (203), Expect = 4e-18
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           + LK+ +I GA LDV   EP P DSPLL+L N ++ PHIG++  E    M  + AQN+I+
Sbjct: 244 EALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVID 303

Query: 262 TF 263
             
Sbjct: 304 VL 305

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 81.8 bits (203), Expect = 5e-18
 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 17/117 (14%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPE-ADKRGAEHT 88
           G  L   T+GIVG GRIG  V         ++I +        S +   E A   G E  
Sbjct: 137 GTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAW--------SSNLTAERAAAAGVEAA 188

Query: 89  N-IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
              ++L   SD + +   L+  T  L+    L  MKP A+L+NTSRG LVD+ AL+ 
Sbjct: 189 VSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLA 245

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 64/228 (28%), Positives = 89/228 (39%), Gaps = 80/228 (35%)

Query: 43  STVGIVGCGRIGLSV--LEKLIPYKVSKFLYTSRSKKPEADKRGAEH-----TNIDDLCK 95
           ST+G+ G G +G  V  L + +  KV   LY        A+ +GA       T  +++ K
Sbjct: 148 STLGVFGKGCLGTEVGRLAQALGMKV---LY--------AEHKGASVCREGYTPFEEVLK 196

Query: 96  QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155
           Q+D + +   LT  T +LIN   L  MKP A LINT RG LVD++AL+            
Sbjct: 197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALL------------ 244

Query: 156 MVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLD 215
                          D+   G ++                                A LD
Sbjct: 245 ---------------DALENGKIAG-------------------------------AALD 258

Query: 216 VMYPEPLPLDSPLLQ----LDNCVILPHIGSAQIETRQEMARITAQNI 259
           V+  EP   D+PL+Q    L N +I PHI  A       +    AQNI
Sbjct: 259 VLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNI 306

Length = 314

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 79.5 bits (196), Expect = 5e-17
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 23/140 (16%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI-----------PY---KVSKF- 69
           G ++ W P+   G  L+  TVG++G GRIG +    ++            Y   ++ KF 
Sbjct: 148 GLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFV 207

Query: 70  -----LYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKP 124
                   +  ++P   KR +   +++++ +++D I +   L   T+HLIN+ RL  MK 
Sbjct: 208 TAYGQFLKANGEQPVTWKRAS---SMEEVLREADVISLHPVLDKTTYHLINKERLALMKK 264

Query: 125 GAILINTSRGQLVDQEALID 144
            A+L+N SRG ++D+ AL++
Sbjct: 265 EAVLVNASRGPVIDEVALVE 284

Length = 386

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 79.1 bits (196), Expect = 8e-17
 Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 72/206 (34%)

Query: 44  TVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
           T+GIVG G IG  LSVL + +  +V  + Y    K P  + R      +++L  QSD + 
Sbjct: 153 TLGIVGYGHIGTQLSVLAESLGMRV--YFYDIEDKLPLGNARQVGS--LEELLAQSDVVS 208

Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK 161
           +    TP T ++I    L  MKPGAILIN SRG +VD +AL D +               
Sbjct: 209 LHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS------------- 255

Query: 162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP-E 220
                         GH++                               GA +DV +P E
Sbjct: 256 --------------GHLA-------------------------------GAAIDV-FPVE 269

Query: 221 PL----PLDSPLLQLDNCVIL-PHIG 241
           P     P +SPL  LDN VIL PHIG
Sbjct: 270 PKSNGDPFESPLRGLDN-VILTPHIG 294

Length = 409

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 57/233 (24%)

Query: 33  NFMCGPALQNSTVGIVGCGRIGL--SVLEKLIPYKVSKF-LYTSRSKKPEADKRGAEHTN 89
            FM    ++NSTVGI+G GRIGL  + L K +  KV  + +Y S     +A K      +
Sbjct: 136 PFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPS-----DAAKDVVTFVS 190

Query: 90  IDDLCKQSDFIIITSALTPDTH-HLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
           +D+L K+SD I +        +  LIN+  +  MK GAILINT+RG+L D+EA+++ +  
Sbjct: 191 LDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALES 250

Query: 149 IRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLK-AK 207
                                      G ++ F                   +DVL   K
Sbjct: 251 ---------------------------GKLAGF------------------GTDVLNNEK 265

Query: 208 KIRGAGLDVMYPEPLPLDSPLLQLDNCVIL-PHIGSAQIETRQEMARITAQNI 259
           +I     D       P+   LL L   V+L PHIGS   E    M   + +N+
Sbjct: 266 EIFFKDFDG-DKIEDPVVEKLLDLYPRVLLTPHIGSYTDEALSNMIETSYENL 317

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           D LK  +I GA LDV   EP      L +LDN ++ PHIG+A +E R  MA+  A NII+
Sbjct: 247 DALKTGEIAGAALDVFEFEPEVSPE-LKKLDNVILTPHIGNATVEARDAMAKEAADNIIS 305

Query: 262 TFHNKPMIYEV 272
               K     V
Sbjct: 306 FLEGKRPKNIV 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 14/123 (11%)

Query: 39  ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG--AEHTNIDDLCKQ 96
           +L+  TVGIVG G +G  +  +L    ++  L       P   +        ++++L  +
Sbjct: 112 SLKGKTVGIVGVGNVGSRLARRLEALGMNVLLC-----DPPRAEAEGDPGFVSLEELLAE 166

Query: 97  SDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA---DI 149
           +D I +   LT D    T+HL++   L ++KPG ILIN SRG ++D +AL+  +    D+
Sbjct: 167 ADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGKDL 226

Query: 150 RVI 152
           RV+
Sbjct: 227 RVV 229

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           + L++ +I GA LDV   EPLP DSPL  L N +I PHI        + +  I  +N+  
Sbjct: 237 EALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENLRR 296

Query: 262 TFHNKPMIYEV 272
               +P++  V
Sbjct: 297 YLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 76.0 bits (187), Expect = 8e-16
 Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 62/216 (28%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPEADKR-GAEH-TNIDDLCKQ 96
           L+  TVG VG GRIG  +L++L P+     LY  R K  PE +K  GA+   ++D +  +
Sbjct: 197 LEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFEEDLDAMLPK 255

Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156
            D ++I + LT  T  + N+ R+  MK G +++N +RG ++D +A+ D  +         
Sbjct: 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS--------- 306

Query: 157 VTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDV 216
                              GH+  +                               G DV
Sbjct: 307 ------------------SGHIGGY-------------------------------GGDV 317

Query: 217 MYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMA 252
            YP+P P D P   + N  + PHI    I+ +   A
Sbjct: 318 WYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYA 353

Length = 386

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 73/234 (31%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-KKPEADKRGAEHTNIDDLC- 94
           G  L   TV I+G G IG+ + ++L P+ V K L T RS      D     + ++DDL  
Sbjct: 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVD 212

Query: 95  ------------KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
                        ++D +++   LT +T  ++N   L SMK GA+L+N +RG L+D +A+
Sbjct: 213 EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAV 272

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           +                   L       +S H G                          
Sbjct: 273 LA-----------------AL-------ESGHLG-------------------------- 282

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITA 256
                   G  +DV + EP   D P+L+  N +I PH+      + + M +I  
Sbjct: 283 --------GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328

Length = 347

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 54/235 (22%), Positives = 82/235 (34%), Gaps = 87/235 (37%)

Query: 44  TVGIVGCGRIGLSV--LEKLIPYKVSKFLYTSRSKK-PEADK------------------ 82
            VGI+G G IG     L + +  +V  + YT   +  PE+ K                  
Sbjct: 135 RVGILGYGSIGRQTARLAQALGMEV--YAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPS 192

Query: 83  ---RGAEHTNIDD-LCKQSDFIIITSALTPDTHHLINRARLESM-KPGAILINTSRGQLV 137
               G +  ++ + L +  D ++++  LTP T HL+     E + K    + N +RG LV
Sbjct: 193 AWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLV 252

Query: 138 DQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFI 197
           D +AL+                            +   G +                   
Sbjct: 253 DTDALV---------------------------AALESGQIR------------------ 267

Query: 198 FSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMA 252
                        GA LDV  PEPLP D PL    N +I PH+ S Q +   + A
Sbjct: 268 -------------GAALDVTDPEPLPADHPLWSAPNVIITPHV-SWQTQEYFDRA 308

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
           D L++ +I GA LDV  PEPLP   PL  L N +I PH+ +     R  +A   A+N+
Sbjct: 227 DALRSGEIAGAALDVTDPEPLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 38  PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR---SKKPEADKRGAEHTNIDDLC 94
           P +   TV +VG G +G    + L     ++ L T     + +   +  G     +++  
Sbjct: 156 PDVAGKTVVVVGAGVVGKEAAQMLRGLG-AQVLITDINVEALEQLEELGGKNVEELEEAL 214

Query: 95  KQSDFIIITSALTPDTHH-LINRARLESMKPGAILINTSRGQLVDQEAL 142
            ++D I+ T+ L       L+    +E MKPG++++N + G +   +AL
Sbjct: 215 AEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQAL 263

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-EHTNIDDLCK 95
           G  L   T G+VG G +G  ++  L      K L       P  +  G  +  +++ + +
Sbjct: 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVL---VCDPPRQEAEGDGDFVSLERILE 166

Query: 96  QSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
           + D I + + LT +    T HL++ A L S++PGA LIN SRG +VD +AL + +  
Sbjct: 167 ECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS 223

Length = 381

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 11/113 (9%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE--HTNIDDLC 94
           G +L + TVGIVG G +G  +  +L    +   L       P AD RG E    ++D+L 
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL----CDPPRAD-RGDEGDFRSLDELV 165

Query: 95  KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           +++D +   + L  D    T HL +   + S+KPGAILIN  RG +VD  AL+
Sbjct: 166 QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL 218

Length = 378

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 62.1 bits (152), Expect = 3e-11
 Identities = 24/58 (41%), Positives = 30/58 (51%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
             L+A +I GA LDV   EPLP D PL  L N ++ PHIG    E  +       +NI
Sbjct: 245 AALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           L N ++GI+G G IG  V      + ++ + YT             E    +D+ K+SDF
Sbjct: 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEP---EDIMKKSDF 176

Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
           ++I+  LT +T  +IN   L   + G  +IN +R  +VD+  +++F+
Sbjct: 177 VLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFL 223

Length = 303

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 202 DVLKAKKIRGAGLDVMYPEP------LPLDSPLLQLDNCVILPHIGSAQIETRQEMARIT 255
           + LK + I GA +DV +  P       P   P  +L N ++ PH      ET +      
Sbjct: 239 EALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEA 298

Query: 256 AQNIINTFHNKPMIYE 271
           A+NI      +P++  
Sbjct: 299 AENIRRYLRGEPLLNL 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQ 96
           G  L   TVGI+G G +G +  ++L  +      Y    K        AE  +++ L K+
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAY---DKYKNFGDAYAEQVSLETLFKE 189

Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
           +D + +   LTP+T  ++N+  + S K     INT+RG++V  + L+  +  
Sbjct: 190 ADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKS 241

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
           +W    M  P ++N TV I+G GRIG +  +    +  +   Y +    P  D     + 
Sbjct: 134 TWQAEIMSKP-VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY---PNKDLDFLTYK 189

Query: 89  N-IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
           + + +  K +D I +      +++HL ++A  + +K GAIL+N +RG +++   LI  + 
Sbjct: 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249

Query: 148 D 148
           D
Sbjct: 250 D 250

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           L    VGI+G G  G  + + L  +  +   Y SR++KP+A+ +G  +  +++L K  D 
Sbjct: 136 LTGLKVGIIGLGTTGQMIADALSFFG-ADVYYYSRTRKPDAEAKGIRYLPLNELLKTVD- 193

Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
            +I + L  +   L+     E +  G IL NTS G   + EAL  ++ 
Sbjct: 194 -VICTCLPKNV-ILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLK 239

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 201 SDVLKAKKIRGAGLDV--MYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQN 258
           +D L   KI GAG+DV  M P PLP D PLL   N ++ PH+  A  E  ++ A I   N
Sbjct: 244 ADALNEGKIAGAGIDVFDMEP-PLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIVFDN 302

Query: 259 IINTFHNKP 267
           I      KP
Sbjct: 303 IEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-AEH 87
            W P  +   ++++  V ++G GRIGL+V +  I  K       +    P A      ++
Sbjct: 134 RWEPPIL-SRSIKDLKVAVIGTGRIGLAVAK--IFAKGYGSDVVAYDPFPNAKAATYVDY 190

Query: 88  TN-IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
            + I++  + +D + +    T   H+L N    +  K GA+ +N +RG LVD +AL+D +
Sbjct: 191 KDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250

Length = 332

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 27/133 (20%), Positives = 41/133 (30%), Gaps = 58/133 (43%)

Query: 107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV 166
           TP T H ++   L ++   A ++N  RG  VD++AL+                       
Sbjct: 207 TPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALV----------------------- 243

Query: 167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDS 226
                +   G +                    +A DV                EPLP  S
Sbjct: 244 ----AALESGRLGG------------------AALDVTA-------------TEPLPASS 268

Query: 227 PLLQLDNCVILPH 239
           PL    N ++ PH
Sbjct: 269 PLWDAPNLILTPH 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LKA  +   GLDV   EP  +   L  + N V++PHI SA   TR+ MA + A N++   
Sbjct: 286 LKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKL 344

Query: 264 HNKPM 268
              P+
Sbjct: 345 KGYPV 349

Length = 386

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMA 252
           L + K++GA LDV   EPLP +SPL Q     I PH+ +    TR   A
Sbjct: 240 LDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAV---TRPAEA 285

Length = 312

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 209 IRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
           I  A LDV  PEPLP   PL       + PH  +   + R+ +A    +N+
Sbjct: 243 ISLASLDVTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENL 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 44  TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--PEADK-RGAEHTNIDDLCKQSDFI 100
           T+GI+G G +G  V + L  +      + SRS+K  P      G E   +     Q+  +
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRKSWPGVQSFAGREE--LSAFLSQTRVL 194

Query: 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           I     TP+T  +IN+  LE +  GA L+N +RG  V ++ L+ 
Sbjct: 195 INLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLA 238

Length = 312

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 89  NIDDLCKQSDFIIITSALTPD--THHLINRARLESMKPGAILI 129
            +++  K++D ++I + L P      L+ R  ++SMKPG++++
Sbjct: 76  LLEEAVKEAD-LVIGAVLIPGAKAPKLVTREMVKSMKPGSVIV 117

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
KOG0069|consensus	336		100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068|consensus	406		100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0067|consensus	435		99.78
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.71
PLN02494	477	adenosylhomocysteinase	99.62
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.62
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.6
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.58
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.57
PLN02712	667	arogenate dehydrogenase	99.51
PLN02256	304	arogenate dehydrogenase	99.48
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.47
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.47
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.46
PRK07417	279	arogenate dehydrogenase; Reviewed	99.45
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.45
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.45
PRK06545	359	prephenate dehydrogenase; Validated	99.43
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.42
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.39
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.37
PRK08818	370	prephenate dehydrogenase; Provisional	99.36
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.34
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.34
PRK08655	437	prephenate dehydrogenase; Provisional	99.33
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.32
KOG0409|consensus	327		99.31
PLN02712	667	arogenate dehydrogenase	99.31
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.3
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.29
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.28
PLN02858	1378	fructose-bisphosphate aldolase	99.27
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.27
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.25
PRK08507	275	prephenate dehydrogenase; Validated	99.23
PLN02858	1378	fructose-bisphosphate aldolase	99.22
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.21
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.2
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	99.19
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.18
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.18
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.12
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.11
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.07
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	99.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.02
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.0
PRK05225	487	ketol-acid reductoisomerase; Validated	98.99
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.99
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.96
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.93
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.9
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.86
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.83
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.83
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.82
PLN02688	266	pyrroline-5-carboxylate reductase	98.81
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.81
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.81
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.77
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.77
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.75
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.71
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.68
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.67
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.66
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.65
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.63
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.63
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.63
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.62
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.58
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.58
KOG1370|consensus	434		98.57
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.57
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.57
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.56
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.53
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.53
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.52
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.52
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.5
PRK07680	273	late competence protein ComER; Validated	98.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.47
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.47
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.42
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.4
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.33
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.27
KOG2380|consensus	480		98.27
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.26
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.23
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.22
PRK06444	197	prephenate dehydrogenase; Provisional	98.21
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.2
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.18
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.17
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.16
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.16
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.15
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.15
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.15
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.14
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.14
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.14
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.13
PRK06141	314	ornithine cyclodeaminase; Validated	98.12
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.1
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.1
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.09
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.08
PLN00203	519	glutamyl-tRNA reductase	98.08
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.06
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.02
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.98
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.97
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.96
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.95
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.91
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.91
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.89
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.89
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.88
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.87
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.86
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.86
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.84
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.83
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.82
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.79
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.79
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.77
PRK14982	340	acyl-ACP reductase; Provisional	97.77
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.76
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.76
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.75
PRK07340	304	ornithine cyclodeaminase; Validated	97.75
PRK14031	444	glutamate dehydrogenase; Provisional	97.74
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.71
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.7
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.69
PRK09414	445	glutamate dehydrogenase; Provisional	97.69
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.68
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.66
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.65
PRK06046	326	alanine dehydrogenase; Validated	97.63
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.62
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.61
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.61
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	97.57
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.57
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.56
PRK08618	325	ornithine cyclodeaminase; Validated	97.53
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.51
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.48
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.47
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.43
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.42
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.41
PRK06823	315	ornithine cyclodeaminase; Validated	97.41
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.4
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.4
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.39
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.37
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.35
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.34
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.34
PRK14030	445	glutamate dehydrogenase; Provisional	97.34
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.3
PRK06407	301	ornithine cyclodeaminase; Provisional	97.3
PRK08291	330	ectoine utilization protein EutC; Validated	97.3
PLN02477	410	glutamate dehydrogenase	97.3
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.29
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.29
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.26
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.23
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.22
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.22
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.2
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.18
PRK06199	379	ornithine cyclodeaminase; Validated	97.15
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.12
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.1
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.1
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.05
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.05
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.01
PTZ00117	319	malate dehydrogenase; Provisional	96.98
PRK07589	346	ornithine cyclodeaminase; Validated	96.95
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.93
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.92
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.92
KOG2653|consensus	487		96.91
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.89
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.85
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.85
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.8
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.78
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.77
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.75
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.72
COG5322	351	Predicted dehydrogenase [General function predicti	96.7
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.66
PRK11579	346	putative oxidoreductase; Provisional	96.66
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.64
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.63
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.6
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.59
KOG0023|consensus	360		96.59
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.59
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.55
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.51
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.48
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.47
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.47
PRK06223	307	malate dehydrogenase; Reviewed	96.47
PRK06270	341	homoserine dehydrogenase; Provisional	96.46
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.46
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.45
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.44
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.38
PRK09496	453	trkA potassium transporter peripheral membrane com	96.38
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.38
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.37
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.37
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.34
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.31
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.3
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.27
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.23
PRK10669	558	putative cation:proton antiport protein; Provision	96.18
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.17
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.15
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.14
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.11
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.1
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.08
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.07
KOG2304|consensus	298		96.06
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.05
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.02
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.01
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.99
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.95
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.95
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.94
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.92
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.91
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.9
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.89
PRK01713	334	ornithine carbamoyltransferase; Provisional	95.86
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.86
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.84
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.84
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.81
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.79
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.77
PRK10637	457	cysG siroheme synthase; Provisional	95.77
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.68
PRK14851	679	hypothetical protein; Provisional	95.68
PTZ00325	321	malate dehydrogenase; Provisional	95.68
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.67
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.64
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.63
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.62
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.61
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.61
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.61
PRK08223	287	hypothetical protein; Validated	95.6
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.59
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.59
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.55
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.55
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.54
PLN02527	306	aspartate carbamoyltransferase	95.5
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.49
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.45
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.44
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	95.43
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.36
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.34
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.33
PRK09496	453	trkA potassium transporter peripheral membrane com	95.32
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.32
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.26
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.26
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.25
PRK08328	231	hypothetical protein; Provisional	95.24
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.22
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.22
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.21
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.21
PRK02102	331	ornithine carbamoyltransferase; Validated	95.21
PRK05086	312	malate dehydrogenase; Provisional	95.2
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.17
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.17
CHL00194	317	ycf39 Ycf39; Provisional	95.16
PRK06392	326	homoserine dehydrogenase; Provisional	95.13
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.12
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.1
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.1
KOG2741|consensus	351		95.1
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.08
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.08
PRK06349	426	homoserine dehydrogenase; Provisional	95.08
PLN02602	350	lactate dehydrogenase	95.07
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.06
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.05
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.04
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.03
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.01
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.99
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.96
PLN02383	344	aspartate semialdehyde dehydrogenase	94.95
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.94
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.93
PRK07411	390	hypothetical protein; Validated	94.9
PRK10206	344	putative oxidoreductase; Provisional	94.9
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.9
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.88
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.78
PRK04148	134	hypothetical protein; Provisional	94.78
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.75
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.74
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.71
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.7
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.69
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.67
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.67
PLN02740	381	Alcohol dehydrogenase-like	94.62
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.52
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.51
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	94.49
PLN02342	348	ornithine carbamoyltransferase	94.45
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.41
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.41
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	94.39
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.38
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.34
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.32
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.27
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.26
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.22
PRK07877	722	hypothetical protein; Provisional	94.18
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.17
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.13
PRK05442	326	malate dehydrogenase; Provisional	94.04
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.94
PRK06128	300	oxidoreductase; Provisional	93.93
PRK06182	273	short chain dehydrogenase; Validated	93.91
PRK08374	336	homoserine dehydrogenase; Provisional	93.9
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.85
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.84
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.78
PRK12742	237	oxidoreductase; Provisional	93.7
KOG4230|consensus	935		93.7
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.65
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.65
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	93.63
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.62
PRK15076	431	alpha-galactosidase; Provisional	93.62
PLN02827	378	Alcohol dehydrogenase-like	93.61
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	93.6
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	93.42
PRK10537	393	voltage-gated potassium channel; Provisional	93.42
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.42
PRK10083	339	putative oxidoreductase; Provisional	93.4
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	93.36
PLN02214	342	cinnamoyl-CoA reductase	93.35
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.32
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	93.31
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	93.3
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.29
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.24
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.23
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	93.21
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	93.21
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.18
COG2344	211	AT-rich DNA-binding protein [General function pred	93.18
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	93.18
COG0281	432	SfcA Malic enzyme [Energy production and conversio	93.16
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.15
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	93.12
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	93.12
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	93.11
PRK08324	681	short chain dehydrogenase; Validated	93.1
PRK07806	248	short chain dehydrogenase; Provisional	93.07
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.05
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.01
PRK12937	245	short chain dehydrogenase; Provisional	93.0
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.99
PRK05993	277	short chain dehydrogenase; Provisional	92.95
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	92.9
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	92.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	92.74
PLN00106	323	malate dehydrogenase	92.74
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	92.67
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.66
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	92.62
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.54
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.52
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	92.48
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.43
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	92.43
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	92.42
PRK12862	763	malic enzyme; Reviewed	92.42
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.39
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.35
COG5495	289	Uncharacterized conserved protein [Function unknow	92.34
PLN02427	386	UDP-apiose/xylose synthase	92.33
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	92.32
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.3
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	92.28
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	92.21
PRK14852	989	hypothetical protein; Provisional	92.2
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.2
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	92.2
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.19
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	92.17
PRK06153	393	hypothetical protein; Provisional	92.06
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	92.04
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.98
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	91.96
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.91
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	91.86
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.86
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	91.81
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	91.79
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.75
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	91.75
KOG0022|consensus	375		91.62
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.56
COG2910	211	Putative NADH-flavin reductase [General function p	91.52
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.49
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	91.44

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-51  Score=384.97  Aligned_cols=204  Identities=38%  Similarity=0.641  Sum_probs=179.8

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|+|++   ....|.+|+||||||||+|+||+.+|+++++|||++++|++...+......+..
T Consensus       110 ~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~  186 (324)
T COG0111         110 LLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVV  186 (324)
T ss_pred             HHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccce
Confidence            456666766  444457899986   234578999999999999999999999999999988888774554433333444


Q ss_pred             -ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 -HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 -~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                       ..++++++++||+|++|+|+|++|++||+++.|++||+|++|||+|||++||++||++                     
T Consensus       187 ~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~---------------------  245 (324)
T COG0111         187 GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLA---------------------  245 (324)
T ss_pred             ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHH---------------------
Confidence             4589999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++||+|+++|||++|||++|||+|+.|.
T Consensus       246 -------------------------------------AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~  288 (324)
T COG0111         246 -------------------------------------ALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTD  288 (324)
T ss_pred             -------------------------------------HHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCH
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC---CCCccc
Q psy3240         246 ETRQEMARITAQNIINTFHNKP---MIYEVP  273 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~---~~~~v~  273 (274)
                      |++.+++.++++||.+|+.|++   ..+.|+
T Consensus       289 ea~~~~~~~~~~~i~~~l~g~~~~~~~~~v~  319 (324)
T COG0111         289 EAQERVAEIVAENIVRYLAGGPVVNNAPEVD  319 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCccccc
Confidence            9999999999999999999999   444443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=9.4e-51  Score=380.95  Aligned_cols=206  Identities=36%  Similarity=0.565  Sum_probs=183.8

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-HhhcC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-ADKRG   84 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a~~~g   84 (274)
                      ++|++.|.+  .....++|+|+.+......|.+|+||||||||+|+||+.+|++++ +|||++++|++ ..... ....+
T Consensus       110 l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~-~~~~~~~~~~~  188 (323)
T PRK15409        110 LVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFN  188 (323)
T ss_pred             HHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECC-CCchhhHHhcC
Confidence            567888887  455667899975432223578999999999999999999999998 99997655544 43333 34556


Q ss_pred             CcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        85 ~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      +.+.+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++                    
T Consensus       189 ~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~--------------------  248 (323)
T PRK15409        189 ARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA--------------------  248 (323)
T ss_pred             cEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHH--------------------
Confidence            777799999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus       249 --------------------------------------AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t  290 (323)
T PRK15409        249 --------------------------------------ALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSAT  290 (323)
T ss_pred             --------------------------------------HHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCc
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      .+++.+++..+++||.+|+.|+++.+.|+
T Consensus       291 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        291 HETRYNMAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999998886

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.9e-49  Score=372.12  Aligned_cols=207  Identities=43%  Similarity=0.670  Sum_probs=189.6

Q ss_pred             HHHHHHHhhh--ccchhccCCCCcc-CCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSW-APNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR   83 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~-~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~   83 (274)
                      .++|++.|.+  .....+.|+|..+ .+.++.|.+++|||+||||+|+||+++|+++++|||+ +.|+++.+.++ ....
T Consensus       109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~~~~~~~~~~  187 (324)
T COG1052         109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRSPNPEAEKEL  187 (324)
T ss_pred             HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCCChHHHhhc
Confidence            3789999998  7778889999876 4556789999999999999999999999999999995 55555555444 4555


Q ss_pred             CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      ++.+.+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++                   
T Consensus       188 ~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~-------------------  248 (324)
T COG1052         188 GARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALID-------------------  248 (324)
T ss_pred             CceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence            6788889999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCc---EEEccCC
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDN---CVILPHI  240 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~n---vi~tPH~  240 (274)
                                                             ||++|+|+|||||||+.||.+.++||+..+|   |++|||+
T Consensus       249 ---------------------------------------AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHi  289 (324)
T COG1052         249 ---------------------------------------ALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHI  289 (324)
T ss_pred             ---------------------------------------HHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEcccc
Confidence                                                   9999999999999999999988999998877   9999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         241 GSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ||+|.+++.+|+..+++|+.+|+.|++..++|+
T Consensus       290 a~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         290 ASATEEARKAMAELALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999886

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-48  Score=362.90  Aligned_cols=201  Identities=29%  Similarity=0.450  Sum_probs=175.3

Q ss_pred             HHHHHHHhhh--ccchhccCCCCccCCC---CCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSWAPN---FMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK   82 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~---~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~   82 (274)
                      .++|+..|.+  .....++|.|..+...   ...+.+|.||||||||+|+||+.+|+++++|||++++|++ .....   
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~-~~~~~---  184 (317)
T PRK06487        109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQL-PGRPA---  184 (317)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECC-CCCcc---
Confidence            3567777777  4455677999865321   1235789999999999999999999999999997666654 32221   


Q ss_pred             cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240          83 RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus        83 ~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                       .....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++                  
T Consensus       185 -~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~------------------  245 (317)
T PRK06487        185 -RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALAD------------------  245 (317)
T ss_pred             -cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH------------------
Confidence             2345689999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCcccc--CCcEEEccCC
Q psy3240         163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQ--LDNCVILPHI  240 (274)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~--~~nvi~tPH~  240 (274)
                                                              ||++|+|+||+||||++||+|.++|||.  +|||++|||+
T Consensus       246 ----------------------------------------AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHi  285 (317)
T PRK06487        246 ----------------------------------------ALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS  285 (317)
T ss_pred             ----------------------------------------HHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCcc
Confidence                                                    9999999999999999999999999995  8999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240         241 GSAQIETRQEMARITAQNIINTFHNKPMIYEV  272 (274)
Q Consensus       241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v  272 (274)
                      |+.|.+++++++..+++||.+|++|+|+ +.|
T Consensus       286 a~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v  316 (317)
T PRK06487        286 AWGSREARQRIVGQLAENARAFFAGKPL-RVV  316 (317)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence            9999999999999999999999999875 444

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=8e-48  Score=359.31  Aligned_cols=197  Identities=28%  Similarity=0.431  Sum_probs=173.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCC---CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNF---MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR   83 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~---~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~   83 (274)
                      ++|++.|.+  .....++|.|..+....   ..+.+|.||||||||+|+||+.+|+++++|||++++|++. ...  ...
T Consensus       107 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~-~~~--~~~  183 (311)
T PRK08410        107 MLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTS-GKN--KNE  183 (311)
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCC-ccc--ccc
Confidence            677888887  45556789997532211   1257999999999999999999999999999977666653 222  123


Q ss_pred             CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      ++...+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++                   
T Consensus       184 ~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~-------------------  244 (311)
T PRK08410        184 EYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAK-------------------  244 (311)
T ss_pred             CceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence            4556799999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccC---CcEEEccCC
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQL---DNCVILPHI  240 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~---~nvi~tPH~  240 (274)
                                                             ||++|+|+ |+||||++||+|+++|||.+   |||++|||+
T Consensus       245 ---------------------------------------AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~  284 (311)
T PRK08410        245 ---------------------------------------ALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHI  284 (311)
T ss_pred             ---------------------------------------HHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCcc
Confidence                                                   99999999 99999999999999999986   899999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240         241 GSAQIETRQEMARITAQNIINTFHNKP  267 (274)
Q Consensus       241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~  267 (274)
                      |+.|.++..++...+++|+.+|++|+.
T Consensus       285 a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        285 AWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999863

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1e-47  Score=361.62  Aligned_cols=205  Identities=38%  Similarity=0.608  Sum_probs=181.8

Q ss_pred             HHHHHHhhh--ccchhccCCCCcc----CCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSW----APNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD   81 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~----~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~   81 (274)
                      ++|+..|.+  .....++|.|...    .+....|.+|+||+|||||+|+||+.+|++|++|||++++|++. .... ..
T Consensus       111 l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~-~~~~~~~  189 (333)
T PRK13243        111 LLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT-RKPEAEK  189 (333)
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-CChhhHH
Confidence            567777877  4445567999752    22234578999999999999999999999999999977666654 3333 33


Q ss_pred             hcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccc
Q psy3240          82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK  161 (274)
Q Consensus        82 ~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~  161 (274)
                      ..++...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++                 
T Consensus       190 ~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~-----------------  252 (333)
T PRK13243        190 ELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVK-----------------  252 (333)
T ss_pred             HcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHH-----------------
Confidence            456666799999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC
Q psy3240         162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG  241 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~  241 (274)
                                                               +|++|+|+||+||||++||+| ++|||++|||++|||+|
T Consensus       253 -----------------------------------------aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia  290 (333)
T PRK13243        253 -----------------------------------------ALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIG  290 (333)
T ss_pred             -----------------------------------------HHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCC
Confidence                                                     999999999999999999998 89999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      +.|.++..++...+++||.+|+.|+++.|.|+
T Consensus       291 ~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~  322 (333)
T PRK13243        291 SATFEAREGMAELVAENLIAFKRGEVPPTLVN  322 (333)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999999999999886

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=4.9e-47  Score=363.23  Aligned_cols=206  Identities=30%  Similarity=0.526  Sum_probs=180.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChhH---hh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPEA---DK   82 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~a---~~   82 (274)
                      ++|++.|.+  .....++|.|+.|.+....|.+|.||||||||+|.||+.+|++++ +|||++++|++.......   ..
T Consensus       130 liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~  209 (386)
T PLN02306        130 LSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTA  209 (386)
T ss_pred             HHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhh
Confidence            677888888  334456789988876555688999999999999999999999985 999977777654322111   11


Q ss_pred             cC------------Ccc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhh
Q psy3240          83 RG------------AEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI  149 (274)
Q Consensus        83 ~g------------~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~  149 (274)
                      .+            +.. .+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++     
T Consensus       210 ~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~-----  284 (386)
T PLN02306        210 YGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVE-----  284 (386)
T ss_pred             hcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHH-----
Confidence            11            122 489999999999999999999999999999999999999999999999999999999     


Q ss_pred             hheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccc
Q psy3240         150 RVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLL  229 (274)
Q Consensus       150 ~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~  229 (274)
                                                                           ||++|+|+||+||||++||++ ++|||
T Consensus       285 -----------------------------------------------------AL~sg~i~gAaLDVf~~EP~~-~~~L~  310 (386)
T PLN02306        285 -----------------------------------------------------HLKANPMFRVGLDVFEDEPYM-KPGLA  310 (386)
T ss_pred             -----------------------------------------------------HHHhCCeeEEEEeCCCCCCCC-cchHh
Confidence                                                                 999999999999999999985 57899


Q ss_pred             cCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         230 QLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       230 ~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ++|||++|||+|+.|.++++++...+++||.+|++|+++.+.|+
T Consensus       311 ~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        311 DMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             hCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999999999999999999999999999999887

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-47  Score=354.17  Aligned_cols=197  Identities=30%  Similarity=0.388  Sum_probs=169.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCC---CCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR   83 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~---~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~   83 (274)
                      ++|+..|.+  .....++|.|..+..   ....+.+|+||||||||+|.||+.+|+++++|||+++.|+ +.....   .
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~-~~~~~~---~  184 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE-HKGASV---C  184 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC-CCcccc---c
Confidence            566777766  334456789975321   1124579999999999999999999999999999766554 332211   1


Q ss_pred             CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      ...+.+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++                   
T Consensus       185 ~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~-------------------  245 (314)
T PRK06932        185 REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLD-------------------  245 (314)
T ss_pred             ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence            1234689999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccc----cCCcEEEccC
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLL----QLDNCVILPH  239 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~----~~~nvi~tPH  239 (274)
                                                             ||++|+|+||+||||++||+|.++|||    ++|||++|||
T Consensus       246 ---------------------------------------aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPH  286 (314)
T PRK06932        246 ---------------------------------------ALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPH  286 (314)
T ss_pred             ---------------------------------------HHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCc
Confidence                                                   999999999999999999999999998    4899999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240         240 IGSAQIETRQEMARITAQNIINTFHNKP  267 (274)
Q Consensus       240 ~~~~t~~~~~~~~~~~~~ni~~~~~g~~  267 (274)
                      +|+.|.++++++...+++||.+|++|+.
T Consensus       287 ia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        287 IAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999998763

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.9e-47  Score=361.93  Aligned_cols=205  Identities=29%  Similarity=0.497  Sum_probs=180.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|+.+|.+  .....++|+|..... ...+.+|+||+|||||+|+||+.+|++|++|||++++|++...... ....++
T Consensus       158 l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        158 MILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             HHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence            567778877  445566799975422 1246899999999999999999999999999997666654432222 344566


Q ss_pred             cc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      .. .+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++                    
T Consensus       237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~--------------------  296 (385)
T PRK07574        237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR--------------------  296 (385)
T ss_pred             eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH--------------------
Confidence            54 589999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus       297 --------------------------------------AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T  338 (385)
T PRK07574        297 --------------------------------------ALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTT  338 (385)
T ss_pred             --------------------------------------HHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCc
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEV  272 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v  272 (274)
                      .+++++++..+++||++|+.|+++.++-
T Consensus       339 ~e~~~~~~~~~~~ni~~~~~G~~~~~~~  366 (385)
T PRK07574        339 LSAQARYAAGTREILECFFEGRPIRDEY  366 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999999999998763

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.4e-46  Score=355.78  Aligned_cols=200  Identities=25%  Similarity=0.448  Sum_probs=174.1

Q ss_pred             HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh---
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK---   82 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~---   82 (274)
                      +++|+++|.+  ......+|.|..     ..+.+|.||+|||||+|.||+.+|++|++|||++++|+++........   
T Consensus       128 ~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~  202 (347)
T PLN02928        128 YLMLGLLRKQNEMQISLKARRLGE-----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLI  202 (347)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCccc-----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcc
Confidence            3667778877  333445678853     246799999999999999999999999999997776655422211110   


Q ss_pred             ----------cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240          83 ----------RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus        83 ----------~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                                ......+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++        
T Consensus       203 ~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~--------  274 (347)
T PLN02928        203 PNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLA--------  274 (347)
T ss_pred             ccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHH--------
Confidence                      11245689999999999999999999999999999999999999999999999999999999        


Q ss_pred             eehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCC
Q psy3240         153 SISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLD  232 (274)
Q Consensus       153 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~  232 (274)
                                                                        ||++|+|+||+||||++||+|+++|||.+|
T Consensus       275 --------------------------------------------------AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~  304 (347)
T PLN02928        275 --------------------------------------------------ALESGHLGGLAIDVAWSEPFDPDDPILKHP  304 (347)
T ss_pred             --------------------------------------------------HHHcCCeeEEEEccCCCCCCCCCChhhcCC
Confidence                                                              999999999999999999999999999999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3240         233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIY  270 (274)
Q Consensus       233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  270 (274)
                      ||++|||+|+.|.+++++++..+++|+.+|+.|+|+.+
T Consensus       305 nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  342 (347)
T PLN02928        305 NVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG  342 (347)
T ss_pred             CEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence            99999999999999999999999999999999998765

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-46  Score=357.79  Aligned_cols=202  Identities=27%  Similarity=0.488  Sum_probs=178.5

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|+++|.+  .....++|.|.... ....+.+|.||+|||||+|+||+.+|++|++|||++++|++...... ....|+
T Consensus       165 liL~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        165 RILILLRNFLPGYHQVVSGEWNVAG-IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             HHHHHHcCcHHHHHHHHhCCCcccc-ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            577888877  45566789997421 12356899999999999999999999999999997766654433333 445566


Q ss_pred             ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      ... +++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++                    
T Consensus       244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~--------------------  303 (386)
T PLN03139        244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVAD--------------------  303 (386)
T ss_pred             eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHH--------------------
Confidence            654 89999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus       304 --------------------------------------AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t  345 (386)
T PLN03139        304 --------------------------------------ACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTT  345 (386)
T ss_pred             --------------------------------------HHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccC
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMI  269 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~  269 (274)
                      .+++.+++..+++|+.+|+.|+++.
T Consensus       346 ~~~~~r~~~~~~~nl~~~~~G~~~~  370 (386)
T PLN03139        346 IDAQLRYAAGVKDMLDRYFKGEDFP  370 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999754

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-46  Score=359.64  Aligned_cols=202  Identities=32%  Similarity=0.494  Sum_probs=178.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|+|..+.   ..|.+|.||||||||+|+||+.+|+++++|||++++|++... .  ...++.
T Consensus       119 l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~-~--~~~~~~  192 (409)
T PRK11790        119 EIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDK-L--PLGNAR  192 (409)
T ss_pred             HHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcc-c--ccCCce
Confidence            566777777  44455679997532   357899999999999999999999999999997777765322 1  112344


Q ss_pred             cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      .. +++|++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++                     
T Consensus       193 ~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~---------------------  251 (409)
T PRK11790        193 QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALAD---------------------  251 (409)
T ss_pred             ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHH---------------------
Confidence            43 89999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCC----CCccccCCcEEEccCCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPL----DSPLLQLDNCVILPHIG  241 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~----~~~l~~~~nvi~tPH~~  241 (274)
                                                           ||++|+|+||+||||++||+|.    ++|||.+|||++|||+|
T Consensus       252 -------------------------------------aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia  294 (409)
T PRK11790        252 -------------------------------------ALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG  294 (409)
T ss_pred             -------------------------------------HHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence                                                 9999999999999999999987    47999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ++|.+++.+++..+++|+.+|+.|+++.+.||+
T Consensus       295 ~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~  327 (409)
T PRK11790        295 GSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNF  327 (409)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence            999999999999999999999999999998874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.1e-45  Score=345.25  Aligned_cols=200  Identities=25%  Similarity=0.356  Sum_probs=172.3

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|+..|.+  ......+|.|...     .+.+++|+||||||+|.||+.+|++|++|||++++|++...... .... .
T Consensus       106 ~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~-~  179 (312)
T PRK15469        106 QVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF-A  179 (312)
T ss_pred             HHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee-c
Confidence            456666666  2334466889642     24689999999999999999999999999997777765433211 1111 1


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++                     
T Consensus       180 ~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~---------------------  238 (312)
T PRK15469        180 GREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLA---------------------  238 (312)
T ss_pred             ccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHH---------------------
Confidence            23489999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++||+|.++|||++|||++|||+|+.|.
T Consensus       239 -------------------------------------aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~  281 (312)
T PRK15469        239 -------------------------------------ALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR  281 (312)
T ss_pred             -------------------------------------HHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence                                                 9999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      +.  ++...+++|+.+|.+|+++.|.|++
T Consensus       282 ~~--~~~~~~~~n~~~~~~g~~~~~~V~~  308 (312)
T PRK15469        282 PA--EAVEYISRTIAQLEKGERVCGQVDR  308 (312)
T ss_pred             HH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence            64  5888999999999999999999874

>KOG0069|consensus

Probab=100.00  E-value=1.1e-45  Score=345.90  Aligned_cols=206  Identities=45%  Similarity=0.783  Sum_probs=192.6

Q ss_pred             HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR   83 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~   83 (274)
                      +++|.++|.+  .......|+| .|...++.|.++.||||||+|+|+||+.+|++|++||+ .+.|+.|...+.  +.+.
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~  204 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEY  204 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHh
Confidence            5688889988  5667788999 88899999999999999999999999999999999996 888888877644  5556


Q ss_pred             CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      +....++++++++||+|++|||+|++|++++|++.+++||+|++|||++||+++|++++.+                   
T Consensus       205 ~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~e-------------------  265 (336)
T KOG0069|consen  205 YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVE-------------------  265 (336)
T ss_pred             cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHH-------------------
Confidence            7777899999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA  243 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~  243 (274)
                                                             ||++|+|.+|+||||++|| +.++||+.++||++|||+|+.
T Consensus       266 ---------------------------------------aL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~  305 (336)
T KOG0069|consen  266 ---------------------------------------ALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSA  305 (336)
T ss_pred             ---------------------------------------HHhcCCcccccccccCCCC-CCCcchhcccceeEecccccC
Confidence                                                   9999999999999999999 899999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         244 QIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       244 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      |.+++.+|+..++.|+.++++|+|+..+|++
T Consensus       306 t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~~  336 (336)
T KOG0069|consen  306 TLETREKMAEIVLNNLLAFFSGKPLLTPVLL  336 (336)
T ss_pred             cHHHHHHHHHHHHHHHHHHHccCCCCCcCCC
Confidence            9999999999999999999999999988763

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=3e-45  Score=363.14  Aligned_cols=205  Identities=30%  Similarity=0.560  Sum_probs=182.2

Q ss_pred             HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA   85 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~   85 (274)
                      .++|++.|.+  .....++|.|.+.   ...|.+|.||+|||||+|+||+.+|++|++|||++++|++......+...++
T Consensus       105 ~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~  181 (525)
T TIGR01327       105 AMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGV  181 (525)
T ss_pred             HHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCC
Confidence            3567888887  4445567999753   2357899999999999999999999999999997777765433222455676


Q ss_pred             ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      ... +++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++                    
T Consensus       182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~--------------------  241 (525)
T TIGR01327       182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYE--------------------  241 (525)
T ss_pred             EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHH--------------------
Confidence            655 89999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+||+||||++||+ .++|||++|||++|||+|+.|
T Consensus       242 --------------------------------------aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t  282 (525)
T TIGR01327       242 --------------------------------------ALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGAST  282 (525)
T ss_pred             --------------------------------------HHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccH
Confidence                                                  99999999999999999995 589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      .+++.+++..+++|+.+|+.|+++.+.||.
T Consensus       283 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~  312 (525)
T TIGR01327       283 REAQENVATQVAEQVLDALKGLPVPNAVNA  312 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCceeeC
Confidence            999999999999999999999999998874

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=4.5e-46  Score=321.17  Aligned_cols=173  Identities=42%  Similarity=0.705  Sum_probs=147.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|+..|.+  ......+|.|  +......+++|+|+||||||+|.||+.+|++|++|||++++|+++..... ....++
T Consensus         3 l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    3 LMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             HHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            578888888  4556678999  22233567999999999999999999999999999997777766555443 455677


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++                     
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~---------------------  139 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLD---------------------  139 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHH---------------------
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHH---------------------
Confidence            77799999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG  241 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~  241 (274)
                                                           ||++|++.||+||||++||+|.++|||++|||++|||+|
T Consensus       140 -------------------------------------aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  140 -------------------------------------ALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             -------------------------------------HHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             -------------------------------------HHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence                                                 999999999999999999999999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-45  Score=362.71  Aligned_cols=204  Identities=33%  Similarity=0.590  Sum_probs=182.9

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|++..   +.|.+|.||+|||||+|+||+.+|++|++|||++++|++..........++.
T Consensus       108 l~L~~~R~~~~~~~~~~~g~W~~~~---~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~  184 (526)
T PRK13581        108 LMLALARNIPQAHASLKAGKWERKK---FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE  184 (526)
T ss_pred             HHHHHHcCHHHHHHHHHcCCCCccC---ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE
Confidence            577888887  33445679997532   3578999999999999999999999999999987777654332224556777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..+++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++                      
T Consensus       185 ~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~----------------------  242 (526)
T PRK13581        185 LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAE----------------------  242 (526)
T ss_pred             EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHH----------------------
Confidence            7799999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          ||++|+|+||+||||++||++ ++|||.+|||++|||+|+.|.+
T Consensus       243 ------------------------------------aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e  285 (526)
T PRK13581        243 ------------------------------------ALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAE  285 (526)
T ss_pred             ------------------------------------HHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHH
Confidence                                                999999999999999999986 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         247 TRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ++.+++..+++|+.+|++|+++.|.|++
T Consensus       286 ~~~~~~~~~~~ni~~~~~g~~~~~~vn~  313 (526)
T PRK13581        286 AQENVAIQVAEQVIDALRGGPVPNAVNL  313 (526)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCceeeC
Confidence            9999999999999999999999999874

>KOG0068|consensus

Probab=100.00  E-value=4.6e-44  Score=331.40  Aligned_cols=202  Identities=27%  Similarity=0.454  Sum_probs=184.3

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      +++.+=|.+  +....++|+|++   ..+.|.+|.|||+||+|+|.||+.+|++++++||+++.||+-.+.+.+...|++
T Consensus       114 li~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq  190 (406)
T KOG0068|consen  114 LILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQ  190 (406)
T ss_pred             HHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccce
Confidence            345555666  445667899975   346789999999999999999999999999999999999888877778889999


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      .++++|+++.||+|++|+|++|+|+++++++.|++||+|..+||++||++||+.||.+                      
T Consensus       191 ~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~----------------------  248 (406)
T KOG0068|consen  191 LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVR----------------------  248 (406)
T ss_pred             eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHH----------------------
Confidence            9999999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCC--CCccccCCcEEEccCCCCCc
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPL--DSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~--~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                          ||++|+++||++|||+.||.-.  ++.|.++|||++|||+|+.|
T Consensus       249 ------------------------------------Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT  292 (406)
T KOG0068|consen  249 ------------------------------------ALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAST  292 (406)
T ss_pred             ------------------------------------HHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccch
Confidence                                                9999999999999999999866  89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEV  272 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v  272 (274)
                      .|++.+++..+++++.+|++| .....|
T Consensus       293 ~EAq~~iaievaea~~~~~~~-~~~g~V  319 (406)
T KOG0068|consen  293 EEAQSRIAIEVAEAVSDYING-NSAGSV  319 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-Ccccee
Confidence            999999999999999999998 444444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-42  Score=323.90  Aligned_cols=193  Identities=26%  Similarity=0.394  Sum_probs=168.4

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-   85 (274)
                      ++|++.|.+  .....++|+|...     .+.+|+||+|||||+|+||+++|+++++|||++++|+++...     .+. 
T Consensus        92 l~L~l~R~i~~~~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~~~~  161 (303)
T PRK06436         92 LLLAWAKNICENNYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----DGIS  161 (303)
T ss_pred             HHHHHHcChHHHHHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----cCcc
Confidence            567777877  4445567999752     357999999999999999999999999999977766654322     122 


Q ss_pred             -cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 -EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 -~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                       ...++++++++||+|++|+|++++|+++++++.|++||||++|||+|||+++|++||++                    
T Consensus       162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~--------------------  221 (303)
T PRK06436        162 SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN--------------------  221 (303)
T ss_pred             cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH--------------------
Confidence             13589999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC-CC
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG-SA  243 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~-~~  243 (274)
                                                            +|++|++.||+||||++||+|+++   .+|||++|||++ +.
T Consensus       222 --------------------------------------aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~  260 (303)
T PRK06436        222 --------------------------------------FLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGM  260 (303)
T ss_pred             --------------------------------------HHHcCCceEEEEccCCCCCCCccC---CCCCEEECCcccccc
Confidence                                                  999999999999999999998776   589999999976 58


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         244 QIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       244 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      |.++.+++...+++|+.+|++|++ .|.|+
T Consensus       261 t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~  289 (303)
T PRK06436        261 SGEIMQPAVALAFENIKNFFEGKP-KNIVR  289 (303)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence            899999999999999999999987 57764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=9e-43  Score=327.81  Aligned_cols=202  Identities=19%  Similarity=0.323  Sum_probs=173.5

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  ......+|.|. |... ..|++|+|++|||||+|.||+++|++|+++|+++++|++......  . ...
T Consensus       113 l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-~~~  187 (330)
T PRK12480        113 IALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL--D-FLT  187 (330)
T ss_pred             HHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-hhh
Confidence            567777777  23334567763 4322 357899999999999999999999999999998777765433211  1 122


Q ss_pred             c-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 H-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      . .++++++++||+|++|+|++++|+++++++.+++||+|++|||+|||++||++||++                     
T Consensus       188 ~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~---------------------  246 (330)
T PRK12480        188 YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIA---------------------  246 (330)
T ss_pred             ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHH---------------------
Confidence            3 389999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCC-------------CCCccccCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLP-------------LDSPLLQLD  232 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~-------------~~~~l~~~~  232 (274)
                                                           ||++|+|+||+||||++||++             ..+|||++|
T Consensus       247 -------------------------------------aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~  289 (330)
T PRK12480        247 -------------------------------------AVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHE  289 (330)
T ss_pred             -------------------------------------HHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCC
Confidence                                                 999999999999999999962             124799999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ||++|||+|+.|.+++.++...+++|+.+|+.|++..++||
T Consensus       290 nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        290 RILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             CEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            99999999999999999999999999999999999999886

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=2e-41  Score=318.80  Aligned_cols=203  Identities=23%  Similarity=0.398  Sum_probs=174.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHH-ccCCCeEEEEeCCCCChhHhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKL-IPYKVSKFLYTSRSKKPEADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L-~~~G~~vv~~~~r~~~~~a~~~g~   85 (274)
                      ++|+..|.+  .....++|.| .|... +.|++|+|++|||||+|.||+++|++| +++|+++++|+++... .. ...+
T Consensus       113 ~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~-~~-~~~~  188 (332)
T PRK08605        113 QAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA-KA-ATYV  188 (332)
T ss_pred             HHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH-hH-Hhhc
Confidence            466777777  2334556778 35443 457899999999999999999999999 7899977776654332 21 1233


Q ss_pred             ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      ... ++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.++|+++|++                    
T Consensus       189 ~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~--------------------  248 (332)
T PRK08605        189 DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLD--------------------  248 (332)
T ss_pred             cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHH--------------------
Confidence            444 89999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCC--CCCCC-----------ccccC
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP--LPLDS-----------PLLQL  231 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep--~~~~~-----------~l~~~  231 (274)
                                                            +|++|+|+||+||||++||  +|.++           +||.+
T Consensus       249 --------------------------------------aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~  290 (332)
T PRK08605        249 --------------------------------------ALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINR  290 (332)
T ss_pred             --------------------------------------HHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcC
Confidence                                                  9999999999999999998  56665           49999


Q ss_pred             CcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         232 DNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       232 ~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      |||++|||+|++|.++.++++..+++|+.+|++|++..++|+
T Consensus       291 ~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        291 EDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             CCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            999999999999999999999999999999999999999885

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3.4e-39  Score=308.09  Aligned_cols=167  Identities=28%  Similarity=0.432  Sum_probs=149.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcc----cHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPD----THH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~----T~~  112 (274)
                      |.+|+||||||||+|+||+.+|++|++|||++++|++... ..  .....+.++++++++||+|++|+|+|++    |++
T Consensus       111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~-~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~  187 (378)
T PRK15438        111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRA-DR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLH  187 (378)
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccc-cc--ccccccCCHHHHHhhCCEEEEeCCCCCCccccccc
Confidence            4689999999999999999999999999998777764322 11  1122456999999999999999999996    999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                      +++++.|++||+|++|||+|||++||++||++                                                
T Consensus       188 li~~~~l~~mk~gailIN~aRG~vVDe~AL~~------------------------------------------------  219 (378)
T PRK15438        188 LADEKLIRSLKPGAILINACRGAVVDNTALLT------------------------------------------------  219 (378)
T ss_pred             ccCHHHHhcCCCCcEEEECCCchhcCHHHHHH------------------------------------------------
Confidence            99999999999999999999999999999999                                                


Q ss_pred             ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240         193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP  267 (274)
Q Consensus       193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~  267 (274)
                                +|++|++.||+||||++||++ +++|+.+++ ++|||+|++|.++..++..++++|+.+|+ |++
T Consensus       220 ----------aL~~g~~~ga~LDV~e~EP~~-~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        220 ----------CLNEGQKLSVVLDVWEGEPEL-NVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             ----------HHHhCCCcEEEEecCCCCCCC-chhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence                      999999999999999999974 677887765 99999999999999999999999999998 554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=5.6e-39  Score=307.06  Aligned_cols=169  Identities=28%  Similarity=0.409  Sum_probs=152.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc----ccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP----DTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~----~T~~  112 (274)
                      |.+|+||||||||+|+||+.+|+++++|||++++|++....   ...+....+++|++++||+|++|+|+|+    .|++
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~  187 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRH  187 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccc
Confidence            57899999999999999999999999999988777653221   1122345699999999999999999999    5999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                      +++++.|++||+|++|||+|||++||++||++                                                
T Consensus       188 li~~~~l~~mk~gailIN~aRG~vVde~AL~~------------------------------------------------  219 (381)
T PRK00257        188 LLDEAFLASLRPGAWLINASRGAVVDNQALRE------------------------------------------------  219 (381)
T ss_pred             cCCHHHHhcCCCCeEEEECCCCcccCHHHHHH------------------------------------------------
Confidence            99999999999999999999999999999999                                                


Q ss_pred             ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3240         193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPM  268 (274)
Q Consensus       193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~  268 (274)
                                +|++|++.+|+||||++||+ .+++|+.. |+++|||+|++|.++..++..++++|+.+|+.+.+.
T Consensus       220 ----------aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~  283 (381)
T PRK00257        220 ----------ALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR  283 (381)
T ss_pred             ----------HHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                      99999999999999999996 46788885 999999999999999999999999999999988753

>KOG0067|consensus

Probab=99.78  E-value=4.6e-19  Score=166.78  Aligned_cols=194  Identities=25%  Similarity=0.356  Sum_probs=158.2

Q ss_pred             HHHHHhhh--ccchhccCCCCccCC----CCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240          10 YIDVIKYV--STPVSCRGEWKSWAP----NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR   83 (274)
Q Consensus        10 ~l~~~r~~--~~~~~~~~~w~~~~~----~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~   83 (274)
                      +|+++|.-  ..+.-+.|.|.....    ...-....+|.++|++|+|..|++++.++++||..++.|++....-..+.+
T Consensus       140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~l  219 (435)
T KOG0067|consen  140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSL  219 (435)
T ss_pred             HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhc
Confidence            45665544  334444566754221    112235688999999999999999999999999966666655443335667


Q ss_pred             CCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240          84 GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus        84 g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                      |.+.+ ++.+++.++|.+++|+-+++.+.++++.-.+++|+.|+.++|++||.++|+++|.+                  
T Consensus       220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaq------------------  281 (435)
T KOG0067|consen  220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQ------------------  281 (435)
T ss_pred             ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHh------------------
Confidence            77665 89999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC-CCCCccccCCcEEEccCCC
Q psy3240         163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL-PLDSPLLQLDNCVILPHIG  241 (274)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~-~~~~~l~~~~nvi~tPH~~  241 (274)
                                                              ||+.|++.+++       |. -...||...||.++|||.+
T Consensus       282 ----------------------------------------aLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta  314 (435)
T KOG0067|consen  282 ----------------------------------------ALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTA  314 (435)
T ss_pred             ----------------------------------------hhccCceeccc-------CcccccccccCCCCCCCCcccc
Confidence                                                    99999999987       11 1245788899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPM  268 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~  268 (274)
                      ++++.+..++...++..+++.+.|...
T Consensus       315 ~~~e~~~~e~re~aa~eiR~ai~g~ip  341 (435)
T KOG0067|consen  315 WYSEAASVELREVAALEIRRAITGRIP  341 (435)
T ss_pred             hhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence            999999999999999999999988643

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.71  E-value=7.3e-17  Score=157.95  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=87.1

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..|.||+|+|+|+|.||+.+|++|+++|+++++++....+.. +...|+...+++++++.||+|++|+    .++++|+
T Consensus       249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~  324 (476)
T PTZ00075        249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIIT  324 (476)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccC
Confidence            4689999999999999999999999999997777755444332 4456777779999999999999985    4788999


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                      ++.|+.||+|++|||+||+   |++.+++.|
T Consensus       325 ~e~~~~MKpGAiLINvGr~---d~Ei~i~aL  352 (476)
T PTZ00075        325 LEHMRRMKNNAIVGNIGHF---DNEIQVAEL  352 (476)
T ss_pred             HHHHhccCCCcEEEEcCCC---chHHhHHHH
Confidence            9999999999999999999   677777733

>PLN02494 adenosylhomocysteinase

Probab=99.62  E-value=1.8e-15  Score=148.00  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..+.|++|+|+|+|.||+.+|++++++|+++++++....+. .+...|+...+++++++.+|+|+.    +..++++++
T Consensus       249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~  324 (477)
T PLN02494        249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIM  324 (477)
T ss_pred             CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchH
Confidence            345899999999999999999999999999766665544333 355667766789999999999998    446788999


Q ss_pred             HHHHhcCCCCcEEEEcCC-CchhcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSR-GQLVDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R-G~iVde~aL~~  144 (274)
                      .+.|+.||+|++|+|+|| +..||+++|.+
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~  354 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLET  354 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence            999999999999999999 67899999998

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.62  E-value=8.4e-16  Score=130.58  Aligned_cols=115  Identities=20%  Similarity=0.303  Sum_probs=92.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc-HHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN-RARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~-~~~l  119 (274)
                      ++|||||+|.||+.+|++|.+.|.++.+|+++..+.+ ..+.|+..+ ++.|++++||+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            6899999999999999999999998878875544433 455676655 899999999999999999888888773 2278


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                      +.+++|.++||+++..+-....+.+.++++|+.|+|+-
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence            88999999999999999999999999999999999953

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.60  E-value=3.8e-15  Score=137.91  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~  117 (274)
                      .+||+||+|.||.+||++|.+.|..+.+|+++..+..  ....|+... +..|+++.+|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            4899999999999999999999998777777666533  556688765 789999999999999999999999884  57


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++.+|||+++||+|+.++...+.+.+.++++|+.|+|.
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA  119 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA  119 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence            999999999999999999999999999999999999994

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.58  E-value=4.9e-15  Score=139.09  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=79.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..|+||+|||||+|+||+++|++|+++|+++++++++..... +...|+...+++|++++||+|++|+|+ +++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~   90 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA   90 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence            579999999999999999999999999998888876533322 455677777999999999999999997 678999999


Q ss_pred             HHHhcCCCCcEEEE
Q psy3240         117 ARLESMKPGAILIN  130 (274)
Q Consensus       117 ~~l~~mk~gailIN  130 (274)
                      +.++.||+|++|+-
T Consensus        91 eil~~MK~GaiL~f  104 (335)
T PRK13403         91 EVEENLREGQMLLF  104 (335)
T ss_pred             HHHhcCCCCCEEEE
Confidence            99999999998854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.57  E-value=2e-14  Score=139.04  Aligned_cols=105  Identities=20%  Similarity=0.281  Sum_probs=90.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..+.|++|+|+|+|.||+.+|++++++|+++++++..+.+.. +...|+...+++++++.+|+|+.++    .+.++++.
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~  266 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG  266 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence            458999999999999999999999999998888765554433 5566776678899999999998854    46889999


Q ss_pred             HHHhcCCCCcEEEEcCCCch-hcHHHHHhhh
Q psy3240         117 ARLESMKPGAILINTSRGQL-VDQEALIDFI  146 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~i-Vde~aL~~~L  146 (274)
                      +.++.||+|++++|+||+.+ +|.++|.+.+
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence            99999999999999999998 9999999843

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02712 arogenate dehydrogenase

Probab=99.51  E-value=9.9e-14  Score=141.76  Aligned_cols=138  Identities=16%  Similarity=0.319  Sum_probs=104.7

Q ss_pred             CCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhc-ccCEEEEc
Q psy3240          26 EWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCK-QSDFIIIT  103 (274)
Q Consensus        26 ~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~-~aDvVil~  103 (274)
                      -|+......++|.++.+++|||||+|.||+.+|+.|+++|.++++|+++.....+.+.|+... ++++++. .+|+|++|
T Consensus       353 ~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILa  432 (667)
T PLN02712        353 KYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLC  432 (667)
T ss_pred             CCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEEC
Confidence            454444556789999999999999999999999999999997777765532222455676544 7888776 58999999


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeee
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIF  183 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (274)
                      +|. ..+..++.+-....||+|++++|+++++-...+++.+.+                             .+...|++
T Consensus       433 vP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l-----------------------------~~~~~~v~  482 (667)
T PLN02712        433 TSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHL-----------------------------PQDFDILC  482 (667)
T ss_pred             CCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhc-----------------------------cCCCceEe
Confidence            994 678888876555579999999999999855555555521                             12346999


Q ss_pred             eecccCCccc
Q psy3240         184 IHMIMGDTVG  193 (274)
Q Consensus       184 ~~~i~~~~~~  193 (274)
                      .||++|.+.+
T Consensus       483 ~HPm~G~e~~  492 (667)
T PLN02712        483 THPMFGPESG  492 (667)
T ss_pred             eCCCCCcccc
Confidence            9999999854

>PLN02256 arogenate dehydrogenase

Probab=99.48  E-value=6.9e-13  Score=123.96  Aligned_cols=123  Identities=15%  Similarity=0.314  Sum_probs=93.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHh-cccCEEEEcCCCCcccHHhccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLC-KQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell-~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      -++++|+|||+|.||+++|+.|++.|.++++++++.....+...|+... ++++++ ..+|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            3567999999999999999999999987777776643222455666543 777876 4799999999963 667777543


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                      ....++++++++|+++++-+..+++.+.+                            .. ...|+.+||++|.+.
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l----------------------------~~-~~~~V~~HPmaG~e~  158 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVL----------------------------PE-EFDILCTHPMFGPES  158 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhC----------------------------CC-CCeEEecCCCCCCCC
Confidence            35668999999999998766666776622                            11 236999999999983

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.47  E-value=2.4e-13  Score=126.06  Aligned_cols=112  Identities=17%  Similarity=0.282  Sum_probs=94.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++|||||+|+||+.+|++|...|.++++|+++..+.. ..+.|+... ++++++++   +|+|++|+|..+.++.+++ +
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence            3799999999999999999999997777765544333 445566554 88888876   6999999998878888884 6


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .++.+++|.++||++++.+.+..++.+.++++|+.|+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence            77889999999999999999999999999999999999

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.47  E-value=1.1e-12  Score=121.32  Aligned_cols=139  Identities=22%  Similarity=0.296  Sum_probs=103.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CH-HHHhcccCEEEEcCCCCcccHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NI-DDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl-~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .++|+|+|+|.||+++|+.++..|..+.++........   +...|+...   +. .+.++.+|+|++++|. ..|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence            47899999999999999999999996644443332222   444666432   33 6778889999999996 4555565


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI  194 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  194 (274)
                       ++..+.+|+|++++|+++-+--..+++.+                            ++.+.. .|+++||++|.+   
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~----------------------------~~~~~~-~~vg~HPM~G~~---  128 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEK----------------------------YLPGDV-RFVGGHPMFGPE---  128 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHH----------------------------hccCCC-eeEecCCCCCCc---
Confidence             34555799999999999988777777766                            334455 899999999995   


Q ss_pred             eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240         195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA  243 (274)
Q Consensus       195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~  243 (274)
                                                   .+.+++.+..||+||.-...
T Consensus       129 -----------------------------~~~~lf~~~~~vltp~~~~~  148 (279)
T COG0287         129 -----------------------------ADAGLFENAVVVLTPSEGTE  148 (279)
T ss_pred             -----------------------------ccccccCCCEEEEcCCCCCC
Confidence                                         23578888999999965443

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.46  E-value=2.7e-13  Score=125.66  Aligned_cols=114  Identities=12%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||.++|+.|...|.++++|+++..+.. ..+.++... ++.+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            4799999999999999999999997777765544333 444566544 888999999999999998877787764  346


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.+++|.++||++++.+...+.+.+.++++|+.|+|+
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence            77899999999999999999999999999999999994

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.45  E-value=4.8e-13  Score=122.86  Aligned_cols=140  Identities=21%  Similarity=0.189  Sum_probs=96.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|+|||+|.||+++|+.|+..|.++++|+++..... +...|..  ..+..+.+++||+|++|+|... ...++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence            3799999999999999999999998888876544333 4444542  2233357889999999999543 33443 4566


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS  199 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (274)
                      +.++++++++|+++.+.-..+++.+                                +...|+..||++|.+        
T Consensus        79 ~~l~~~~ii~d~~Svk~~~~~~~~~--------------------------------~~~~~v~~HPm~G~~--------  118 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAPIVEAWEK--------------------------------LHPRFVGSHPMAGTA--------  118 (279)
T ss_pred             HhCCCCcEEEeCcchHHHHHHHHHH--------------------------------hhCCceeeCCcCCCC--------
Confidence            7789999999999876544344333                                123489999999987        


Q ss_pred             hhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       200 ~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                           ++|...             ....|+...++++||+-.+
T Consensus       119 -----~~g~~~-------------a~~~lf~g~~~~l~p~~~~  143 (279)
T PRK07417        119 -----ESGVEA-------------GQRGLFKNRPWVLTPTENT  143 (279)
T ss_pred             -----cchHHH-------------hhHHHhCCCcEEEccCCCC
Confidence                 233222             1234667778888887544

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.45  E-value=3.5e-13  Score=124.07  Aligned_cols=114  Identities=19%  Similarity=0.299  Sum_probs=94.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||+.+|+.+...|.++++|+++..+.. ..+.++... ++++++++||+|++|+|.+..++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5899999999999999999999997777665443333 445566554 789999999999999998888887763  346


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.+++|+++||+++..+...+++.+.++++|+.|+|+
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~  120 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA  120 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence            78899999999999999988999999999888888884

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.45  E-value=3e-13  Score=124.51  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=91.9

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc-c-HHHH
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI-N-RARL  119 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li-~-~~~l  119 (274)
                      +|||||+|.||+.+|+.|...|.++++|+++..+.. ....|.... +..+++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            589999999999999999999997777765443333 445566443 78899999999999999888888775 3 3467


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +.+++|+++||++++.+.+.+++.+.++++|+.|+|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~  116 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD  116 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence            788999999999999999999999988887777777

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.43  E-value=1.5e-12  Score=123.92  Aligned_cols=143  Identities=20%  Similarity=0.244  Sum_probs=103.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--cCCcc---cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--RGAEH---TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--~g~~~---~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ++|+|||+|.||+++|+.|+..|..+.+++.+..... ...  .++..   .++++++++||+|++|+|.. .+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence            5799999999999999999999987777765544333 222  23321   36788899999999999974 5666663 


Q ss_pred             HHHh-cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240         117 ARLE-SMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY  195 (274)
Q Consensus       117 ~~l~-~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  195 (274)
                      +... .++++++++|+++.+.-..+++.+.                             .++...|+..||++|.+    
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-----------------------------~~~~~~~ig~HPMaG~e----  125 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEAL-----------------------------LGDLIRFVGGHPMAGSH----  125 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHh-----------------------------cCCCCeEEeeCCcCcCc----
Confidence            3333 4789999999999876555555541                             13456799999999998    


Q ss_pred             eehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         196 FIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       196 ~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                               ++|.-.             .+..|+....+++||+-..
T Consensus       126 ---------~sG~~a-------------a~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545        126 ---------KSGVAA-------------ARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             ---------hhhHHH-------------hcHHHHCCCcEEEecCCCC
Confidence                     555333             2356888888999997543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.42  E-value=9.6e-13  Score=122.10  Aligned_cols=113  Identities=17%  Similarity=0.294  Sum_probs=95.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++|||||+|.||+.+|++|...|.++++|+++..+.. ..+.|+... +++|+++.   +|+|++++|..+.++.+++ .
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-E   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-H
Confidence            3799999999999999999999997777766544333 445677655 78888876   6999999998878888874 6


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++.+++|.++||++++.......+.+.++++|+.|+|+
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence            778899999999999999999999999999999999994

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.39  E-value=1.7e-12  Score=120.36  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=92.1

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHHHh
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RARLE  120 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~l~  120 (274)
                      +|||||+|+||+.+|++|...|.++.+|+...........|+... +..+++++||+|++|+|..++.+.++.  ...++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~   81 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK   81 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence            799999999999999999999997777765433222445566544 788999999999999998888888763  24677


Q ss_pred             cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         121 SMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       121 ~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .+++|.++||+++..+-....+.+.++++|+.|+|
T Consensus        82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd  116 (292)
T PRK15059         82 ASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD  116 (292)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            78999999999999999999999999888877777

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.37  E-value=1.8e-12  Score=128.34  Aligned_cols=112  Identities=18%  Similarity=0.265  Sum_probs=94.5

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh----cCCc----ccCHHHHhcc---cCEEEEcCCCCcccH
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK----RGAE----HTNIDDLCKQ---SDFIIITSALTPDTH  111 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~----~g~~----~~sl~ell~~---aDvVil~lPlt~~T~  111 (274)
                      +||+||+|.||+.||++|...|.++.+|++...+.+ ..+    .|+.    ..+++|+++.   +|+|++|+|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999997777655444333 222    1442    2378888875   999999999999999


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++ ...++.+++|.++||+|+...-+...+.+.++++|+.|+|+
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda  131 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM  131 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence            998 57889999999999999999999999999999999999994

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.36  E-value=9.4e-12  Score=119.30  Aligned_cols=110  Identities=16%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH-
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR-  116 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~-  116 (274)
                      +...+|+|||+ |.||+++|+.|+. +|.+++++++...         ...++++.+++||+|++|+|.. .+..++.+ 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l   71 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEY   71 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHH
Confidence            45689999999 9999999999985 5887777765311         1236788899999999999964 44555532 


Q ss_pred             -HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         117 -ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       117 -~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                       .....++++++++|+++-+..-.+++.+                                +...|+++||++|++
T Consensus        72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~~--------------------------------~~~~fVG~HPMaG~E  115 (370)
T PRK08818         72 VALAGGRAAGQLWLDVTSIKQAPVAAMLA--------------------------------SQAEVVGLHPMTAPP  115 (370)
T ss_pred             hhhhcCCCCCeEEEECCCCcHHHHHHHHh--------------------------------cCCCEEeeCCCCCCC
Confidence             1123489999999999977433334333                                123599999999997

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.34  E-value=1.9e-11  Score=113.53  Aligned_cols=145  Identities=18%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      ..++|+|||+|.||..+|+.|+..|.  ++++|+++..... +...|..   ..++++.+++||+|++|+|.. .+..++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~   83 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA   83 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence            34789999999999999999998884  5666665443333 4445542   236788899999999999963 334443


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI  194 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  194 (274)
                       .+..+.+++++++++++..+.-..+++.+.                            +. .+..|++.||++|.+   
T Consensus        84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~----------------------------~~-~~~~~v~~hPm~g~e---  130 (307)
T PRK07502         84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPH----------------------------LP-EGVHFIPGHPLAGTE---  130 (307)
T ss_pred             -HHHHhhCCCCCEEEeCccchHHHHHHHHHh----------------------------CC-CCCeEEeCCCCCCCc---
Confidence             345567899999999988654333344331                            11 234699999999987   


Q ss_pred             eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                                .+|.-.             ....|+...++++||+.+.
T Consensus       131 ----------~~G~~~-------------a~~~l~~g~~~~l~~~~~~  155 (307)
T PRK07502        131 ----------HSGPDA-------------GFAELFENRWCILTPPEGT  155 (307)
T ss_pred             ----------ccchhh-------------cCHHHHCCCeEEEeCCCCC
Confidence                      222221             2346777888889986544

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.34  E-value=3.4e-12  Score=109.18  Aligned_cols=103  Identities=20%  Similarity=0.326  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..+.||++.|+|||.+|+.+|+.|+++|+++++++..+-+.. +...|++..+++|+++++|+++.++.    .+.++..
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~   94 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITG   94 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCH
Confidence            568999999999999999999999999998888776554333 66778888899999999999998764    3567889


Q ss_pred             HHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         117 ARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      +.|++||+|+++.|++.-.. +|.+.|.+
T Consensus        95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   95 EHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            99999999999999998655 47777666

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.33  E-value=2.8e-11  Score=118.34  Aligned_cols=118  Identities=21%  Similarity=0.290  Sum_probs=89.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ++|+||| +|.||+++|+.|+..|.++++++++.... . +.+.|+... +..+.+++||+|++|+|. ..+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            4799997 99999999999999999777777554432 2 445566544 788899999999999996 3455665 456


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                      .+.++++++++|+++.+....+++.+.+                             .++..|+..||++|..
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~-----------------------------~~~~~~V~~HPmaGp~  122 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYA-----------------------------PEGVEILPTHPMFGPR  122 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhc-----------------------------CCCCEEEEcCCCCCCC
Confidence            6778999999999997766666666621                             1245799999999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.32  E-value=5.1e-12  Score=117.22  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +.+++|++++|+|+|.||+.+|+.|+++|+++++++++..+.. +...+....   +++++++++|+|++|+|.+     
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----  220 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----  220 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----
Confidence            4689999999999999999999999999997666655433222 333454433   5778899999999999973     


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCc-hhcH
Q psy3240         113 LINRARLESMKPGAILINTSRGQ-LVDQ  139 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~-iVde  139 (274)
                      +++++.++.|++++++||++... -+|.
T Consensus       221 ii~~~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       221 VLTADVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence            67888999999999999999843 2455

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG0409|consensus

Probab=99.31  E-value=7.4e-12  Score=115.92  Aligned_cols=117  Identities=16%  Similarity=0.257  Sum_probs=103.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--  115 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--  115 (274)
                      -+.++||+||+|+||..|+..|.+.|.++++|++..++.. ..+.|++.. ++.|+.+.||+|+.++|.....+.++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            4678999999999999999999999998888887666655 677788775 899999999999999999999998873  


Q ss_pred             HHHHhcCCCCcEE-EEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         116 RARLESMKPGAIL-INTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       116 ~~~l~~mk~gail-INv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ...|+.+++|... ||+++.++.-...|.+.++.+++.++|.
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDA  154 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDA  154 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEec
Confidence            4578888888877 9999999999999999999999999994

>PLN02712 arogenate dehydrogenase

Probab=99.31  E-value=1e-11  Score=127.10  Aligned_cols=124  Identities=17%  Similarity=0.318  Sum_probs=92.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHh-cccCEEEEcCCCCcccHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLC-KQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell-~~aDvVil~lPlt~~T~~li~  115 (274)
                      .+-+.++|||||+|+||+.+|+.|+.+|.++++++++.....+.+.|+... ++++++ .++|+|++|+|. ..+..++.
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~  126 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK  126 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence            345567999999999999999999999997777766533222556676554 788866 569999999995 46777876


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                      .-.+..++++++|+|+++.+..-.+++.+                            .+.+ ...|+++||++|.+
T Consensus       127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~----------------------------~l~~-~~~~v~~HPMaG~e  173 (667)
T PLN02712        127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLD----------------------------YLPE-DFDIICSHPMFGPQ  173 (667)
T ss_pred             hhhhhcCCCCeEEEECCCCcHHHHHHHHH----------------------------hcCC-CCeEEeeCCcCCCc
Confidence            54446789999999998776433444444                            1222 23599999999998

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.30  E-value=1.5e-11  Score=119.64  Aligned_cols=103  Identities=19%  Similarity=0.280  Sum_probs=86.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..+.|++|+|+|+|.||+.+|++|+++|+++++++....+.. +...|+...+++++++.+|+|+.++    .+.++++.
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~  283 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITA  283 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHH
Confidence            458999999999999999999999999998777765544433 4455776668999999999999865    45778999


Q ss_pred             HHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         117 ARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      +.++.||+|++++|+|+... +|.++|.+
T Consensus       284 ~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        284 EHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999999999999999876 67777765

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.29  E-value=1.8e-11  Score=113.55  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHH---hcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDL---CKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~el---l~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++|||||+|.||..+|++|...|.++++|+++..+.+ ..+.+... .+++++   ++++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            3799999999999999999999997777765544333 34445433 355554   45689999999987 788887 46


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                      ..+.+++|.++||++.+...+...+.+.++++|+.|+|+-
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~  118 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG  118 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence            7788999999999999998999999999999999999954

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.28  E-value=1.3e-11  Score=116.60  Aligned_cols=95  Identities=21%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ..|+|++|||||+|+||+++|+.|+.+|+++++++++..+..  +.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~   91 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE   91 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence            568999999999999999999999999997777766544333  455677767999999999999999997655 77887


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      ++.++.|++|++| -.+.|
T Consensus        92 ~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         92 EEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHhcCCCCCEE-EECCC
Confidence            7888999999988 44445

>PLN02858 fructose-bisphosphate aldolase

Probab=99.27  E-value=1.4e-11  Score=134.32  Aligned_cols=116  Identities=10%  Similarity=0.196  Sum_probs=100.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc--cH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI--NR  116 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li--~~  116 (274)
                      +.++||+||+|.||..||++|...|..+.+|+++..+.. ..+.|+..+ ++.|+.++||+|++|+|..+.++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            467899999999999999999999997777765444333 456677655 89999999999999999999999887  35


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh--heeehh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIR--VISISM  156 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~--i~~~D~  156 (274)
                      ..++.+++|.++||+|+..+-..+.+.+.++++|  +.|+|+
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            6888899999999999999999999999999999  999994

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.27  E-value=1.4e-11  Score=113.57  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=91.5

Q ss_pred             EEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHHHhcC
Q psy3240          47 IVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RARLESM  122 (274)
Q Consensus        47 IIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~l~~m  122 (274)
                      |||+|.||.++|++|...|.++++|+++..+.. ..+.|+... ++.+++++||+|++|+|....++.++.  .+.++.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            689999999999999999997777765544333 445566544 889999999999999998777787773  4677789


Q ss_pred             CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         123 KPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       123 k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++|.++||+++..+-..+.+.+.++++|+.|+|+
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda  114 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA  114 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence            9999999999988888889999999999999994

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.25  E-value=2.3e-11  Score=119.89  Aligned_cols=115  Identities=16%  Similarity=0.255  Sum_probs=95.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc----CCc---ccCHHHHhc---ccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR----GAE---HTNIDDLCK---QSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~----g~~---~~sl~ell~---~aDvVil~lPlt~~T~  111 (274)
                      .+|||||+|.||+.+|++|...|.++.+|+++..+.+ ..+.    |..   ..+++|+++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999997777765554433 2221    422   238888886   5899999999999999


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .++ .+.++.+++|.++||++.+...|...+.+.++++|+.|+|+-.
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapV  127 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGV  127 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCC
Confidence            998 4678889999999999999999999999999999999999543

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.23  E-value=1.2e-10  Score=106.68  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc--ccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~--~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++|+|||+|.||+++|+.|+..|.  ++++|+++..... +.+.|+.  ..+++++. +||+|++|+|... +..++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence            379999999999999999998774  4555555433322 4455653  23677765 4999999999643 44444 34


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q psy3240         118 RLESMKPGAILINTSRGQ  135 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~  135 (274)
                      ..+ ++++++++++++.+
T Consensus        78 l~~-l~~~~iv~d~gs~k   94 (275)
T PRK08507         78 LLD-IKENTTIIDLGSTK   94 (275)
T ss_pred             Hhc-cCCCCEEEECccch
Confidence            556 88999999987744

>PLN02858 fructose-bisphosphate aldolase

Probab=99.22  E-value=4e-11  Score=130.89  Aligned_cols=115  Identities=14%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhc--cHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLI--NRA  117 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li--~~~  117 (274)
                      .++|||||+|.||..||++|...|.++++|+++..+.. ....|+.. .++.+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            48899999999999999999999997777765443333 44556544 488999999999999999988999887  456


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhh--hhheeehh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIAD--IRVISISM  156 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~--~~i~~~D~  156 (274)
                      .++.+++|.++||+++..+-..+.+.+.+++  +|+.|+|+
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc
Confidence            7888999999999999999999999999998  89999993

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.21  E-value=1e-10  Score=113.56  Aligned_cols=104  Identities=19%  Similarity=0.293  Sum_probs=87.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..+.|++|+|+|+|.||+.+|+.++++|+++++++....+.. +...|+...+++++++.+|+|+.+.    .+.++++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~i~  272 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDIIT  272 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHHHH
Confidence            4568999999999999999999999999998777766555444 6778887677889999999999865    3567888


Q ss_pred             HHHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      .+.+..||+|++++|+|+..+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 67777665

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.20  E-value=6e-11  Score=116.96  Aligned_cols=114  Identities=13%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---C--Ccc-cCHHHHh---cccCEEEEcCCCCcccHHh
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---G--AEH-TNIDDLC---KQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---g--~~~-~sl~ell---~~aDvVil~lPlt~~T~~l  113 (274)
                      .|||||+|.||+.||++|...|.++++|+++..+.+ ..+.   +  +.. .++++++   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            389999999999999999999998777766554443 2222   2  322 3677765   4689999999998888888


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      + .+.++.+++|.++||++.+...+.....+.++++|+.|+|+-.
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapV  124 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGV  124 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCC
Confidence            8 4677889999999999999999999999999999999999543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR00518 alaDH alanine dehydrogenase

Probab=99.19  E-value=4.5e-11  Score=114.56  Aligned_cols=131  Identities=18%  Similarity=0.282  Sum_probs=101.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcCCc----c---cCHHHHhcccCEEEEcCCCC-c
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRGAE----H---TNIDDLCKQSDFIIITSALT-P  108 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g~~----~---~sl~ell~~aDvVil~lPlt-~  108 (274)
                      .+.+++|.|+|.|.+|+.+++.++.+|+++++++++..+.+ . ...+..    .   .++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36788999999999999999999999997777766543322 2 223321    1   24677889999999998652 2


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeeccc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIM  188 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  188 (274)
                      .+..+++++.++.||+++++||++    +|..-..+                  +++.+|+|+|++..++..++++.++|
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva----~d~GG~~e------------------~~~~t~~d~p~~~~~Gv~~~~v~nlP  301 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA----IDQGGCVE------------------TSRPTTHDQPTYAVHDVVHYCVANMP  301 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe----cCCCCCcc------------------CCcCCCCCCCEEEECCeEEEEeCCcc
Confidence            345678999999999999999998    23222233                  56789999999999999999999999


Q ss_pred             CCc
Q psy3240         189 GDT  191 (274)
Q Consensus       189 ~~~  191 (274)
                      |.-
T Consensus       302 ~~~  304 (370)
T TIGR00518       302 GAV  304 (370)
T ss_pred             ccc
Confidence            974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.18  E-value=2.6e-10  Score=117.48  Aligned_cols=144  Identities=17%  Similarity=0.179  Sum_probs=102.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ++|+|||+|.||+++|+.++..|  .++++++++..+.. +.+.|+.   ..+++++++++|+|++++|.. ....++. 
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~-   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA-   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence            78999999999999999999888  35666665544433 4455653   236888899999999999964 4444442 


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceee
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF  196 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  196 (274)
                      +..+.++++++++|+++.+....+++.+.                            +.+.+..|++.||++|.+     
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~----------------------------~~~~~~r~~~~hPm~G~~-----  128 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAV----------------------------FGELPAGFVPGHPIAGSE-----  128 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHh----------------------------ccccCCeEEecCCcCcCC-----
Confidence            44456788999999998664445555551                            222356799999999997     


Q ss_pred             ehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       197 ~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                              .+|...             .+..|+...+++++|+...
T Consensus       129 --------~~g~~~-------------a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806        129 --------KSGVHA-------------ANADLFRNHKVILTPLAET  153 (735)
T ss_pred             --------cchhhh-------------hhhHHhCCCeEEEECCCCC
Confidence                    333322             3457888889999996544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.18  E-value=2.7e-10  Score=109.24  Aligned_cols=106  Identities=16%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ..++|+||| +|.||+++|+.|+..|..+.+|+.+..           .+.++++++||+|++|+|... +..++ ++..
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~  163 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLP  163 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHh
Confidence            458999999 999999999999999997777765321           256788899999999999764 45555 3344


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                      + +++|++++|+++.+..-.+++.+.                            +.   ..|+++||++|.+
T Consensus       164 ~-l~~~~iv~Dv~SvK~~~~~~~~~~----------------------------~~---~~fvg~HPm~G~~  203 (374)
T PRK11199        164 P-LPEDCILVDLTSVKNAPLQAMLAA----------------------------HS---GPVLGLHPMFGPD  203 (374)
T ss_pred             C-CCCCcEEEECCCccHHHHHHHHHh----------------------------CC---CCEEeeCCCCCCC
Confidence            4 899999999998765545555551                            11   1499999999987

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.12  E-value=1.5e-10  Score=99.06  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      |++|+|+|||+|..|++.|++|+..|.++++..+...+..  +++.|.+..+.+|++++||+|++.+|. +....++.++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~   80 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE   80 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence            6899999999999999999999999998777766555333  778899988999999999999999995 3445567788


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q psy3240         118 RLESMKPGAILINTSRGQ  135 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~  135 (274)
                      ..+.||+|++|+ .+.|-
T Consensus        81 I~p~l~~G~~L~-fahGf   97 (165)
T PF07991_consen   81 IAPNLKPGATLV-FAHGF   97 (165)
T ss_dssp             HHHHS-TT-EEE-ESSSH
T ss_pred             HHhhCCCCCEEE-eCCcc
Confidence            899999999876 34443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.11  E-value=3.5e-10  Score=105.37  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=76.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +.++.|++++|||+|.+|+.+++.|+++|+++++++++..... +...|+...   ++.+.++++|+|+.++|.     .
T Consensus       147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~  221 (296)
T PRK08306        147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----L  221 (296)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----h
Confidence            3578999999999999999999999999997777776644333 455666544   567888999999999984     4


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q psy3240         113 LINRARLESMKPGAILINTSR  133 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~R  133 (274)
                      +++++.++.|++++++||++.
T Consensus       222 ~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        222 VLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             hhhHHHHHcCCCCcEEEEEcc
Confidence            678899999999999999986

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.07  E-value=6.2e-10  Score=104.64  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      |+||+|||||+|+||+++|+.|+.+|+++++++++.... . +.+.|+...+..+++++||+|++++|.... ...+.++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e   79 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE   79 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence            679999999999999999999999999766666654322 2 345677666888999999999999996433 4455566


Q ss_pred             HHhcCCCCcEEEEcCCCchh
Q psy3240         118 RLESMKPGAILINTSRGQLV  137 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iV  137 (274)
                      ..+.++++. +|.++-|--+
T Consensus        80 i~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        80 IQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHhhCCCCc-EEEEeCCccH
Confidence            778888886 6777766443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=99.05  E-value=2.4e-10  Score=106.54  Aligned_cols=132  Identities=18%  Similarity=0.295  Sum_probs=107.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc-------ccCHHHHhcccCEEEEcCCCC-
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE-------HTNIDDLCKQSDFIIITSALT-  107 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~-------~~sl~ell~~aDvVil~lPlt-  107 (274)
                      +.+...+|.|||.|.+|..-|+.+.++|+++.+.+.+..+..  ...++.+       ...+++.+.++|+|+-++-.. 
T Consensus       164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg  243 (371)
T COG0686         164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG  243 (371)
T ss_pred             CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence            346778999999999999999999999998888876654433  2222332       126888999999999776432 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMI  187 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  187 (274)
                      .....++.++.+++||||+++||++    +|.--.++                  ++++||+++|.|..++..||++.+.
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA----iDqGGc~E------------------t~~~TTh~~PtY~~~gvvhY~VaNm  301 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA----IDQGGCFE------------------TSHPTTHDDPTYEVDGVVHYGVANM  301 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE----EcCCCcee------------------ccccccCCCCceeecCEEEEecCCC
Confidence            3455677889999999999999998    77777777                  8899999999999999999999999


Q ss_pred             cCCc
Q psy3240         188 MGDT  191 (274)
Q Consensus       188 ~~~~  191 (274)
                      ||.-
T Consensus       302 PgaV  305 (371)
T COG0686         302 PGAV  305 (371)
T ss_pred             Cccc
Confidence            9974

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.02  E-value=1.7e-09  Score=95.39  Aligned_cols=117  Identities=17%  Similarity=0.260  Sum_probs=90.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHh
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~l  113 (274)
                      +.+++||+++|+|+|+||+.+|+.|..+|+++++++.+..+..  ....+....+.++++. +||+++.|...     ++
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-----~~   97 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-----GV   97 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-----cc
Confidence            4689999999999999999999999999998776665443322  2233666666677775 79999976653     57


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh-hhccc
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS-MVTNE  160 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D-~~~~~  160 (274)
                      ++++.++.|+ ..+++.-+-+...| ..-.+.|+++|+.+++ +.+|-
T Consensus        98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~Na  143 (200)
T cd01075          98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNA  143 (200)
T ss_pred             cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeC
Confidence            8889999997 45888888887766 4556778899999887 77755

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.00  E-value=1.4e-09  Score=100.33  Aligned_cols=96  Identities=25%  Similarity=0.294  Sum_probs=72.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcC-------------CcccCHHHHhccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRG-------------AEHTNIDDLCKQS   97 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g-------------~~~~sl~ell~~a   97 (274)
                      ++|+|||+|.||.++|+.+...|.++++|+.+....+            ..+.|             ....+..+.++.|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999998888876544321            01111             1222333568999


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhc
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVD  138 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVd  138 (274)
                      |+|+.|+|..++.+..+-.+..+.++++++|+ |+|...+.+
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~  126 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR  126 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            99999999999988887777777899999986 888765443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.99  E-value=7.2e-10  Score=108.25  Aligned_cols=90  Identities=24%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC------CChh-HhhcCCcccCHHHHhcccCEEEEcCCCCccc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS------KKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~------~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      ..|+||+|+|||+|.+|+.-|..|+..|.++++.-+..      ..-. +.+.|....+++|++++||+|++.+|.+ . 
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~-  109 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q-  109 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-
Confidence            57999999999999999999999999999766443332      1111 4456777779999999999999999998 3 


Q ss_pred             HHhccHHHHhcCCCCcEEE
Q psy3240         111 HHLINRARLESMKPGAILI  129 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailI  129 (274)
                      .+.+.++.++.||+|++|.
T Consensus       110 q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        110 HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             HHHHHHHHHhhCCCCCEEE
Confidence            6777799999999999884

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.99  E-value=5e-09  Score=95.56  Aligned_cols=129  Identities=17%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             HHHHHccCC--CeEEEEeCCCCChh-HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEc
Q psy3240          57 VLEKLIPYK--VSKFLYTSRSKKPE-ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus        57 iA~~L~~~G--~~vv~~~~r~~~~~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv  131 (274)
                      +|+.|+..|  .+++++|.+..... +.+.|+...  +-.+.++++|+|++|+|.. .+..++ ++..+.+++|++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence            577888777  66666766554444 556777543  3267899999999999963 355555 3566679999999999


Q ss_pred             CCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeE
Q psy3240         132 SRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRG  211 (274)
Q Consensus       132 ~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~  211 (274)
                      ++.+.--.+++.+.+.                             ....|+++||++|.+             ++|... 
T Consensus        79 ~SvK~~~~~~~~~~~~-----------------------------~~~~~v~~HPM~G~e-------------~~G~~~-  115 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP-----------------------------EGVRFVGGHPMAGPE-------------KSGPEA-  115 (258)
T ss_dssp             -S-CHHHHHHHHHHHT-----------------------------SSGEEEEEEESCSTS-------------SSSGGG-
T ss_pred             CCCCHHHHHHHHHhcC-----------------------------cccceeecCCCCCCc-------------cccchh-
Confidence            9988666666666322                             346899999999998             677654 


Q ss_pred             EEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         212 AGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       212 a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                                  .+..|+...++++||+-..
T Consensus       116 ------------a~~~lf~g~~~il~p~~~~  134 (258)
T PF02153_consen  116 ------------ADADLFEGRNWILCPGEDT  134 (258)
T ss_dssp             -------------TTTTTTTSEEEEEECTTS
T ss_pred             ------------hcccccCCCeEEEeCCCCC
Confidence                        4578999999999998653

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.96  E-value=2.5e-09  Score=98.54  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=72.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-------hcC-----------------Ccc-cCHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-------KRG-----------------AEH-TNIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-------~~g-----------------~~~-~sl~ell~~   96 (274)
                      ++|+|||+|.||..+|..|...|.++++|+.+....+ ..       ..+                 +.. .++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            5899999999999999999999998888876544322 11       011                 122 367889999


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhc
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVD  138 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVd  138 (274)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|+..+-.
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~  124 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE  124 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence            99999999987776665555666778999877 7998866533

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.93  E-value=5.9e-09  Score=86.48  Aligned_cols=113  Identities=19%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh--HhhcCC-----cccCHHHHhcccCEEEEcCCCCcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--ADKRGA-----EHTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~~~g~-----~~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      .++.+++++|+|.|.||+.+++.|...| .++.+++++..+..  +...+.     ...+.+++++++|+|++++|....
T Consensus        15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK   94 (155)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence            3577899999999999999999999886 54555554433222  223332     234777888999999999998654


Q ss_pred             -cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         110 -THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       110 -T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       ... .+...   .++++.+++|++..+.. . .+.+.+++.|+.+++
T Consensus        95 ~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~  137 (155)
T cd01065          95 PGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTID  137 (155)
T ss_pred             CCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeC
Confidence             222 23322   36899999999887543 3 788877777776655

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.90  E-value=2.4e-08  Score=92.00  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------------------------cCCcc-cCHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------------------------RGAEH-TNIDDLCK   95 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------------------------~g~~~-~sl~ell~   95 (274)
                      ++|+|||.|.||.++|..+...|.++++|+.+..... ..+                         ..+.. .+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999989998888876543221 110                         11122 37888899


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      .||+|+.++|...+.+.-+-++..+.++++++|+..+++-  ....+.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~  130 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAE  130 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHh
Confidence            9999999999765555544456667788999885443333  3344555

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=1.2e-08  Score=92.38  Aligned_cols=115  Identities=17%  Similarity=0.294  Sum_probs=96.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHh---cccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLC---KQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell---~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      +++|.||+|+||..++++|...|.++++||......+ +...+++.+ +++|++   ...-+|-+++|....|..+++ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            4789999999999999999999998888887665444 556676554 777764   456899999999988888874 5


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .-+.|.+|-++||-+-..--|...-.+.|+++|++|+||-|
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccC
Confidence            67778999999999988877888888889999999999988

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=1.9e-08  Score=94.96  Aligned_cols=100  Identities=15%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----------hcC---------Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----------KRG---------AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----------~~g---------~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||.|.||..+|..+...|++|++||....... ..           +.+         +.. .+++++++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999998888887643221 10           111         122 2788999999999


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +-++|...+.+..+-++.-+.+++++ +|.+++.. ....++.+
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~  129 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYA  129 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHH
Confidence            99999999999888788888899998 55554443 45555655

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.84  E-value=1e-08  Score=97.30  Aligned_cols=102  Identities=21%  Similarity=0.334  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      -+.||++.|.|||..|+.+|+++++.|+++++....+-+.. +.-.|++...++|+...+|+++.++    .++++|..+
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~e  281 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKE  281 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHH
Confidence            37899999999999999999999999997766654443332 6677888889999999999999966    567889999


Q ss_pred             HHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         118 RLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      .+..||+|+++-|.|.-.+ +|.+.|.+
T Consensus       282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         282 HFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHhccCCeEEecccccceeccHHHHHH
Confidence            9999999999999997665 46666654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.83  E-value=6.6e-09  Score=79.92  Aligned_cols=88  Identities=18%  Similarity=0.405  Sum_probs=62.5

Q ss_pred             EEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCCh-h--HhhcCCcc-c-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKP-E--ADKRGAEH-T-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~-~--a~~~g~~~-~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ||||||+|+||+++++.|...|   .++.++.+|+.+. .  +.+.++.. . +..|++++||+|++++|. .....++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence            7999999999999999999998   7666454444433 2  44556543 2 789999999999999995 33344442


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                       +. ....++.++|++.-|
T Consensus        80 -~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   80 -EI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -HH-HHHHTTSEEEEESTT
T ss_pred             -HH-hhccCCCEEEEeCCC
Confidence             33 556789999998643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.83  E-value=1.5e-08  Score=94.37  Aligned_cols=83  Identities=16%  Similarity=0.292  Sum_probs=66.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      .+++|+|||+|.||+++|++|...|.++.+|+++..           .+++++++++|+|++++|. +..+.++.. ...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~   69 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA   69 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence            457899999999999999999999997776665432           3678889999999999997 477777733 323


Q ss_pred             -cCCCCcEEEEcCCCch
Q psy3240         121 -SMKPGAILINTSRGQL  136 (274)
Q Consensus       121 -~mk~gailINv~RG~i  136 (274)
                       .+++++++|++++|-.
T Consensus        70 ~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         70 LNLPPETIIVTATKGLD   86 (308)
T ss_pred             hcCCCCcEEEEeCCccc
Confidence             4788999999987543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.82  E-value=1.9e-08  Score=92.80  Aligned_cols=98  Identities=20%  Similarity=0.279  Sum_probs=70.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----------cC-------------Cccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----------RG-------------AEHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----------~g-------------~~~~-sl~ell~~   96 (274)
                      ++|+|||.|.||..+|..+...|.++++|+.+..... ..+           .+             +... +++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999998888876543222 110           12             1222 554 5789


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      ||+|+.++|...+.+..+-++..+.++++++++ |+|.-.+   .++.+
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~  129 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLAS  129 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHh
Confidence            999999999877766555456777889999998 7766543   34555

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.81  E-value=1.8e-08  Score=91.27  Aligned_cols=98  Identities=15%  Similarity=0.269  Sum_probs=72.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ++|||||+|+||+++|+.|...|.    ++++++++.....  ..+.|+... +..+++++||+|++|+| .+..+.++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            479999999999999999988776    5666645554332  445677554 78888999999999997 455666663


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                       +..+.++++.++|++..|  +..+.+.+
T Consensus        80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~  105 (266)
T PLN02688         80 -ELRPLLSKDKLLVSVAAG--ITLADLQE  105 (266)
T ss_pred             -HHHhhcCCCCEEEEecCC--CcHHHHHH
Confidence             455667889999988655  35555555

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.81  E-value=3.9e-08  Score=95.61  Aligned_cols=108  Identities=19%  Similarity=0.335  Sum_probs=77.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc---cCHHHHh---------------cccCEEEEcC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH---TNIDDLC---------------KQSDFIIITS  104 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~---~sl~ell---------------~~aDvVil~l  104 (274)
                      ++|+|||+|.||..+|..|...|.++++|+.+..+.+....|...   ..+++++               +.||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            789999999999999999999999888887655443333333221   1444442               3799999999


Q ss_pred             CCC------cccHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         105 ALT------PDTHHLI--NRARLESMKPGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       105 Plt------~~T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      |..      ++...+.  -....+.+++|+++|+.|+..+--.+.+...+.+.+
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~  137 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEAR  137 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            964      2333333  245677889999999999988777777777665543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.81  E-value=4.3e-09  Score=89.97  Aligned_cols=124  Identities=20%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc---c------------------------cC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE---H------------------------TN   89 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~---~------------------------~s   89 (274)
                      ..+...+|.|+|.|+.|+..++.++++|++++.++.+..... ....+..   .                        ..
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            456779999999999999999999999998888887654332 2222211   1                        14


Q ss_pred             HHHHhcccCEEEEcC-CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceee
Q psy3240          90 IDDLCKQSDFIIITS-ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFT  168 (274)
Q Consensus        90 l~ell~~aDvVil~l-Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~  168 (274)
                      +.+.++.+|+|+.++ -..+....++.++.++.|||+++++|+|    +|..--++                  +++.+|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis----~D~gG~iE------------------~t~~~T  153 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS----CDQGGSIE------------------TTRPTT  153 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT----GGGT-SBT------------------TEETTB
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE----ecCCCCcC------------------ccccCC
Confidence            667889999988643 3456677899999999999999999997    55544444                  678899


Q ss_pred             cCCCcccCccceeee
Q psy3240         169 LGDSFHKGHVSAFIF  183 (274)
Q Consensus       169 ~~~~~~~~~~~~~~~  183 (274)
                      +++++|++++..+|+
T Consensus       154 ~~~p~~~~~GV~~~~  168 (168)
T PF01262_consen  154 HADPTYEKNGVTHYG  168 (168)
T ss_dssp             TTCEEEEETTEEEEE
T ss_pred             CCCCeEEeCCEEEEC
Confidence            999999999988875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.77  E-value=8.4e-08  Score=92.83  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=73.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh--------------------cC-Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK--------------------RG-AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~--------------------~g-~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||+|.||..+|..|...|.++++|+.+..+.....                    .| +.. .++++++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            3799999999999999999999998888876554332111                    12 233 2678889999999


Q ss_pred             EEcCCCCcc------cHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         101 IITSALTPD------THHLI--NRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       101 il~lPlt~~------T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++|+|....      ...+.  -.+..+.+++|.++|+.|+..+-..+.+.+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~  132 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK  132 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence            999996432      12222  134667789999999999766555566654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.77  E-value=2.6e-08  Score=93.19  Aligned_cols=79  Identities=24%  Similarity=0.408  Sum_probs=66.3

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      |.++.||+|+|||.| .||+.||.+|...|+.+.++++++.            ++.++.++||+|+++++..+    .+.
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~~----~v~  217 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRPR----LID  217 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----ccc
Confidence            578999999999996 9999999999999997777765542            68899999999999998643    455


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      +..   +|+|+++||+|--
T Consensus       218 ~~~---ik~GaiVIDvgin  233 (301)
T PRK14194        218 ADW---LKPGAVVIDVGIN  233 (301)
T ss_pred             Hhh---ccCCcEEEEeccc
Confidence            544   7999999999853

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.75  E-value=2.3e-08  Score=98.52  Aligned_cols=105  Identities=12%  Similarity=0.157  Sum_probs=86.9

Q ss_pred             HHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-----CCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHHHHhcC
Q psy3240          53 IGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-----GAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRARLESM  122 (274)
Q Consensus        53 IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-----g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~~l~~m  122 (274)
                      ||+.||++|...|.++++|++...+.+ ..+.     ++..+ +++|+++.   +|+|++++|..+.++.++ .+.++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999997777655444433 3331     35443 89998874   899999999999999998 4688999


Q ss_pred             CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         123 KPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       123 k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .+|.++||+++...-|.....+.++++|+.|+|+-.
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapV  115 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGV  115 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCC
Confidence            999999999999999999999999999999999544

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.71  E-value=7.4e-08  Score=94.08  Aligned_cols=112  Identities=21%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-----------------ccCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-----------------HTNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-----------------~~sl~ell~~aDvVil~lP  105 (274)
                      ++|||||+|.||..+|..|.+ |.++++||....+.+....|..                 ..+..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            789999999999999999877 6888888876655443233332                 2233457899999999999


Q ss_pred             CC------cccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhh--hheeeh
Q psy3240         106 LT------PDTHHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIADI--RVISIS  155 (274)
Q Consensus       106 lt------~~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~--~i~~~D  155 (274)
                      ..      ++...++.  ....+.+++|.++|+.|+..+-..+.+++.+.+.  |+.+.|
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~  145 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQ  145 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCC
Confidence            65      34456653  4567889999999999999888777654443332  555444

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.68  E-value=6.3e-08  Score=90.73  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--------C------Ccc-cCHHHHhcccCEEEEcCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--------G------AEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--------g------~~~-~sl~ell~~aDvVil~lP  105 (274)
                      .++|+|||+|.||..+|.+|...|.++.+|+++....+ ....        +      +.. .+++++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            35899999999999999999999997777766444322 2221        2      222 378888999999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHhhhhh
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRG-QLVD--QEALIDFIAD  148 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG-~iVd--e~aL~~~L~~  148 (274)
                      .. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            75 22     4556778999999999997 3332  4455554443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=1.2e-07  Score=87.72  Aligned_cols=99  Identities=18%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH------------hhcCC-------------ccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA------------DKRGA-------------EHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a------------~~~g~-------------~~~-sl~ell~~   96 (274)
                      ++|||||.|.||..+|..+...|.++++|+......+.            .+.|.             ... ++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999988888876553221            11121             122 56 55799


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcC-CCCcEEEEcCCCchhcHHHH
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESM-KPGAILINTSRGQLVDQEAL  142 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~m-k~gailINv~RG~iVde~aL  142 (274)
                      ||+|+-++|.+.+.+..+-.+.-+.+ +++++++..+++-.+..-+.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~  131 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA  131 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence            99999999999988887765444445 89999988877655544443

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.67  E-value=1.4e-07  Score=87.87  Aligned_cols=117  Identities=14%  Similarity=0.195  Sum_probs=76.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcCC-------------cc-cCHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRGA-------------EH-TNIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g~-------------~~-~sl~ell~~   96 (274)
                      ++|+|||+|.||.++|..|...|.++++|+++..... .           .+.|.             .. .++.++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999999999999998888876543221 1           12232             22 378889999


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccC
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKG  176 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~  176 (274)
                      ||+|+.++|...+.+..+-.+ ++.+.++.++|..+... .....+.+.+                             .
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~-~~~~~la~~~-----------------------------~  131 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA-LLASAFTEHL-----------------------------A  131 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC-CCHHHHHHhc-----------------------------C
Confidence            999999999865554443333 34433444444443333 3455566632                             2


Q ss_pred             ccceeeeeecccCC
Q psy3240         177 HVSAFIFIHMIMGD  190 (274)
Q Consensus       177 ~~~~~~~~~~i~~~  190 (274)
                      ++..|+..||+.+.
T Consensus       132 ~~~~~~~~hp~~p~  145 (308)
T PRK06129        132 GRERCLVAHPINPP  145 (308)
T ss_pred             CcccEEEEecCCCc
Confidence            45678888888765

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.66  E-value=6.7e-08  Score=88.99  Aligned_cols=101  Identities=18%  Similarity=0.345  Sum_probs=71.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh-Hh-hcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE-AD-KRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~-a~-~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .++|||||+|+||+++|+.|...|.    ++++++++..+.. .. +.|+... +..+++++||+|++++|. .....++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence            3589999999999999999987663    3444443332222 22 3576544 778899999999999994 5666666


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                       .+..+.+++++++|++.-|  ++.+.|.+.+
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l  109 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEF  109 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhc
Confidence             3444557888999999877  4455555543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.65  E-value=9.3e-08  Score=95.32  Aligned_cols=100  Identities=20%  Similarity=0.311  Sum_probs=75.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~   96 (274)
                      ++|||||+|.||..||..+...|..+++|+......+ .           .+.|             +... ++++ ++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            6899999999999999999999998888876554322 1           2223             2232 6655 569


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHhhh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVDQEALIDFI  146 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVde~aL~~~L  146 (274)
                      ||+|+-++|...+.+..+-.+.-+.+++++++ +|+|+-.+-   .+.+.+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~  134 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAAL  134 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhc
Confidence            99999999999998887766655567899999 599987764   455533

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.2e-07  Score=88.66  Aligned_cols=80  Identities=16%  Similarity=0.396  Sum_probs=66.4

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +-++.||+|+||| .|.||++||++|...|+.+.++++++.            ++++++++||+|+++++..+    ++.
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~  216 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVK  216 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcc
Confidence            4689999999999 999999999999999998777765553            47889999999999998644    454


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      +..   +++|+++||+|--.
T Consensus       217 ~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        217 GDW---IKPGATVIDVGINR  233 (296)
T ss_pred             hhe---ecCCCEEEEcCCcc
Confidence            433   79999999998533

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.63  E-value=1e-07  Score=88.79  Aligned_cols=89  Identities=18%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      -|+||+|+|||+|+-|.+=|.+|+..|.++++.-+......  +.+.|....+.+|++++||+|.+.+|. +....++.+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PD-e~q~~vy~~   93 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPD-EQQKEVYEK   93 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCch-hhHHHHHHH
Confidence            58999999999999999999999999998776665554433  777898888999999999999999995 344567777


Q ss_pred             HHHhcCCCCcEE
Q psy3240         117 ARLESMKPGAIL  128 (274)
Q Consensus       117 ~~l~~mk~gail  128 (274)
                      +.-+.|++|+.|
T Consensus        94 ~I~p~Lk~G~aL  105 (338)
T COG0059          94 EIAPNLKEGAAL  105 (338)
T ss_pred             HhhhhhcCCceE
Confidence            888899999865

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.63  E-value=2.2e-07  Score=89.73  Aligned_cols=107  Identities=14%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc-----------------CCcc-c--CHHHHhcccCEEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-----------------GAEH-T--NIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~-----------------g~~~-~--sl~ell~~aDvVil  102 (274)
                      ++|+|||+|.||..+|..+. .|.++++||....+.+....                 +... .  +..++++.||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            37999999999999997776 48988888876554331111                 2222 1  36678899999999


Q ss_pred             cCCCCccc-------HHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         103 TSALTPDT-------HHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       103 ~lPlt~~T-------~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      |+|...+-       ..+..  ++..+ +++|.++|+.|+..+=-.+.+.+.+.+.++
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v  136 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI  136 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence            99965111       12211  23344 799999999999888788888875554333

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.63  E-value=1.8e-07  Score=86.17  Aligned_cols=107  Identities=20%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCChh---HhhcCC-c-ccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPE---ADKRGA-E-HTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~~---a~~~g~-~-~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      ...+|||||+|.||+.+++.+..  .+++++.+.++.....   +...+. . +.+++++++++|+|++|+|....  .-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence            35799999999999999999975  4776665555544322   334453 2 34899999999999999996332  22


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                      +....   ++.|.-++..+++.+.+.++|.+..++.|..
T Consensus        83 ~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 IVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             HHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            22333   4567777778889888889999988776654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.62  E-value=1.5e-07  Score=86.46  Aligned_cols=99  Identities=15%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCCC-h-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSKK-P-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~~-~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .+++|+|||+|+||+++|+.|...|    .++++ ++|+.. . .  ....++... +..+++++||+|++++|.. ...
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v-~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~   79 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITV-SNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVA   79 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEE-ECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHH
Confidence            3568999999999999999998776    43444 444332 2 2  233466543 7888899999999999953 444


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      .++ .+..+.++++.++|++.-|-  ..+.+.+
T Consensus        80 ~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~  109 (279)
T PRK07679         80 EAL-IPFKEYIHNNQLIISLLAGV--STHSIRN  109 (279)
T ss_pred             HHH-HHHHhhcCCCCEEEEECCCC--CHHHHHH
Confidence            444 34555678899999985443  3444444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=1.7e-07  Score=87.07  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----cC--------------Ccc-cCHHHHhcccCEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----RG--------------AEH-TNIDDLCKQSDFII  101 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----~g--------------~~~-~sl~ell~~aDvVi  101 (274)
                      ++|+|||+|.||..+|..|...|.++++++.+..... ..+     .+              +.. .++++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            6899999999999999999999998888876544322 111     11              122 36778899999999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +++|...+...-+-.+.-..++++++++....|  +....+.+
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~  125 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQ  125 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHh
Confidence            999976543333323333446777766433333  23445655

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=1.8e-07  Score=85.84  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcC-------------Cccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRG-------------AEHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g-------------~~~~-sl~ell~~   96 (274)
                      ++|+|||+|.||..+|..+...|.++++++.+....+            ..+.|             +... +.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999998888876544321            11122             1222 444 4789


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ||+|+.++|.....+.-+-++..+.++++++++....|  +....+.+
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~  128 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAA  128 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHH
Confidence            99999999987776655555566778999988433333  44446655

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.58  E-value=1.7e-07  Score=87.09  Aligned_cols=80  Identities=18%  Similarity=0.365  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||.|.+ |+.+|..|...|+.+.+...++            .++.+.+++||+|+++++    +.++++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~  216 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLT  216 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence            56899999999999999 9999999999999776655432            268899999999999998    345787


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+   .+|+|+++||+|.-.
T Consensus       217 ~~---~ik~gavVIDVGin~  233 (285)
T PRK14189        217 AD---MVKPGATVIDVGMNR  233 (285)
T ss_pred             HH---HcCCCCEEEEccccc
Confidence            74   469999999999543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.58  E-value=2.1e-07  Score=92.42  Aligned_cols=104  Identities=13%  Similarity=0.178  Sum_probs=73.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-------------------hcC-Cccc-CHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-------------------KRG-AEHT-NIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-------------------~~g-~~~~-sl~ell~~aDvV  100 (274)
                      ++|||||+|.||.++|..|...|.++++|+++..... ..                   ..+ +... ++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999998888887554322 11                   012 3333 788999999999


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      +.++|...+.+..+-.+.-+.++++++ |.+++.++ ....+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence            999998877676554455556677765 55555553 35566664443

>KOG1370|consensus

Probab=98.57  E-value=1.5e-07  Score=87.94  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=77.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      +.||.+.|.|+|.+|+..|+.|++||+++++-.-.+-.. ++...|++...++|+.++.|+++.+.    ..+.+|..+.
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H  287 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEH  287 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHH
Confidence            679999999999999999999999999655543322222 26667888889999999999999854    5678899999


Q ss_pred             HhcCCCCcEEEEcCCCch
Q psy3240         119 LESMKPGAILINTSRGQL  136 (274)
Q Consensus       119 l~~mk~gailINv~RG~i  136 (274)
                      |.+||.++|+.|++.-.+
T Consensus       288 ~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  288 FDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHhCcCCcEEeccccccc
Confidence            999999999999998654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.57  E-value=7.2e-08  Score=79.58  Aligned_cols=91  Identities=22%  Similarity=0.348  Sum_probs=57.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--H-hhcCC-cccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-DKRGA-EHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-~~~g~-~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      -...+|+|||.|++|..+++.|+..|..+..++.|+....  + ...+. ...+++|+++++|++++++|.. ....+. 
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-   85 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-   85 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-
Confidence            3457899999999999999999999998878877765433  2 12222 3348889999999999999974 333332 


Q ss_pred             HHHHhc--CCCCcEEEEcC
Q psy3240         116 RARLES--MKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~--mk~gailINv~  132 (274)
                      ++.-..  .++|.+++-+|
T Consensus        86 ~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   86 EQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHHCC--S-TT-EEEES-
T ss_pred             HHHHHhccCCCCcEEEECC
Confidence            333333  68999999985

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.57  E-value=3.4e-07  Score=84.46  Aligned_cols=99  Identities=14%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--------------cCC-------------ccc-CHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--------------RGA-------------EHT-NIDDL   93 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--------------~g~-------------~~~-sl~el   93 (274)
                      ++|+|||.|.||..+|..+...|.++++|+.+....+ +.+              .+.             ... ++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            6899999999999999999999998888876544321 100              011             122 34 56


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|+....|-  ....+.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~  131 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIAT  131 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHh
Confidence            789999999999876555544445556678999998776663  4455555

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.56  E-value=1.8e-07  Score=86.60  Aligned_cols=91  Identities=12%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--------------CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--------------GAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--------------g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|||+|.||..+|..|...|.++.+|++.....+ ....              +... .++++.++.+|+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            4799999999999999999999997777765433322 2222              2322 3778889999999999996


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                       ..++.++. +..+.+++++++|+++.|-
T Consensus        82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv  108 (325)
T PRK00094         82 -QALREVLK-QLKPLLPPDAPIVWATKGI  108 (325)
T ss_pred             -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence             45666663 4556678999999997543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.53  E-value=2.6e-07  Score=83.78  Aligned_cols=97  Identities=16%  Similarity=0.390  Sum_probs=66.2

Q ss_pred             EEEEEccChHHHHHHHHHccCCCe--EEEEeCCCCCh-h-H-hhc-CCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVS--KFLYTSRSKKP-E-A-DKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~--vv~~~~r~~~~-~-a-~~~-g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      +|||||+|+||+++++.|...|..  .+.+++|+... . . ... ++.. .+..++++++|+|++++| ......++..
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence            799999999999999999877742  23444444332 2 2 223 3444 378889999999999999 3455555532


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                        + .++++.++|.++-|  +..+.|.+.+
T Consensus        81 --l-~~~~~~~vis~~ag--~~~~~l~~~~  105 (258)
T PRK06476         81 --L-RFRPGQTVISVIAA--TDRAALLEWI  105 (258)
T ss_pred             --h-ccCCCCEEEEECCC--CCHHHHHHHh
Confidence              3 25788999997733  6666666633

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.53  E-value=3.7e-07  Score=81.23  Aligned_cols=88  Identities=18%  Similarity=0.319  Sum_probs=66.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCC--cccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGA--EHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~--~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++++|+|.|+||..+|+++...|.++++..++.++..   +...+.  +..+.++..+.+|+|++++|.. ....++ ++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~-~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVL-AE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHH-HH
Confidence            6899999999999999999999998887777766544   233333  3348899999999999999963 333332 44


Q ss_pred             HHhcCCCCcEEEEcCC
Q psy3240         118 RLESMKPGAILINTSR  133 (274)
Q Consensus       118 ~l~~mk~gailINv~R  133 (274)
                      ....+. |.++||+.-
T Consensus        80 l~~~~~-~KIvID~tn   94 (211)
T COG2085          80 LRDALG-GKIVIDATN   94 (211)
T ss_pred             HHHHhC-CeEEEecCC
Confidence            555455 899999864

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.52  E-value=3.5e-07  Score=85.02  Aligned_cols=78  Identities=17%  Similarity=0.364  Sum_probs=64.7

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||+|+|||. |.||+++|.+|...|+.++++..++            .++.+.+++||+|+.+++...    ++.
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~~----~v~  216 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRGH----FVT  216 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCccc----cCC
Confidence            67899999999999 9999999999999999777763322            168899999999999998643    355


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      ...   +|+|+++||+|-
T Consensus       217 ~~~---ik~GavVIDvgi  231 (284)
T PRK14179        217 KEF---VKEGAVVIDVGM  231 (284)
T ss_pred             HHH---ccCCcEEEEecc
Confidence            444   799999999984

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.52  E-value=6.6e-07  Score=84.35  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             HHHHHHHHccCCCeEEEEeCCCCCh-----h-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240          54 GLSVLEKLIPYKVSKFLYTSRSKKP-----E-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA  126 (274)
Q Consensus        54 G~~iA~~L~~~G~~vv~~~~r~~~~-----~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga  126 (274)
                      |+.||++|...|..+++|+++....     . ..+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8999999999999888887543311     1 455677765 78999999999999999888888887 56889999999


Q ss_pred             EEEEcCCCchhcHHH
Q psy3240         127 ILINTSRGQLVDQEA  141 (274)
Q Consensus       127 ilINv~RG~iVde~a  141 (274)
                      ++||+|+.++.....
T Consensus       111 IVID~STIsP~t~~~  125 (341)
T TIGR01724       111 VICNTCTVSPVVLYY  125 (341)
T ss_pred             EEEECCCCCHHHHHH
Confidence            999999866544433

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.50  E-value=4.7e-07  Score=83.01  Aligned_cols=93  Identities=26%  Similarity=0.459  Sum_probs=61.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ++|||||+|.||+.+++.+...  +++.+...++.....   ....+... .++++++.++|+|++|+|.... ..+   
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~---   77 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEV---   77 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHH---
Confidence            4899999999999999998764  565555455544322   23344443 4899998999999999874222 111   


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~  140 (274)
                       ....++.|.-++.++.|.+.|.+
T Consensus        78 -~~~al~~Gk~Vvv~s~gAl~d~~  100 (265)
T PRK13304         78 -VPKSLENGKDVIIMSVGALADKE  100 (265)
T ss_pred             -HHHHHHcCCCEEEEchHHhcCHH
Confidence             12234556666677777776643

>PRK07680 late competence protein ComER; Validated

Probab=98.49  E-value=5.1e-07  Score=82.58  Aligned_cols=102  Identities=18%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh-H-hhc-CCccc-CHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE-A-DKR-GAEHT-NIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~-a-~~~-g~~~~-sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      ++|+|||+|+||+.+|+.|...|.    .+.+++++..+.. . ... ++... +..+++..+|+|++++|. .....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence            369999999999999999987773    3444544332222 2 222 45443 788889999999999983 3455555


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                       ++..+.++++.++|+++-|  +..+.|.+.+..
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~~  110 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVPC  110 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence             3455567888999999854  366777665543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.47  E-value=2.2e-07  Score=76.76  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc---CCccc---CHHHHhcccCEEEEcCCCCc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR---GAEHT---NIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~---g~~~~---sl~ell~~aDvVil~lPlt~  108 (274)
                      .+++++++.|||.|.+|+.++..|...|++.+...+|+... .  +...   .+...   ++.+.+.++|+|+.++|...
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM   87 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence            37999999999999999999999999999856555565433 2  2333   22222   56667899999999999754


Q ss_pred             ccHHhccHHHHhcCCCCc-EEEEcCCCchhcH
Q psy3240         109 DTHHLINRARLESMKPGA-ILINTSRGQLVDQ  139 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~ga-ilINv~RG~iVde  139 (274)
                      .   .+.++.++..++.. +++|++.-.-++.
T Consensus        88 ~---~i~~~~~~~~~~~~~~v~Dla~Pr~i~~  116 (135)
T PF01488_consen   88 P---IITEEMLKKASKKLRLVIDLAVPRDIDP  116 (135)
T ss_dssp             T---SSTHHHHTTTCHHCSEEEES-SS-SB-T
T ss_pred             c---ccCHHHHHHHHhhhhceeccccCCCCCh
Confidence            3   67888887766544 9999986554443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.47  E-value=5.9e-07  Score=89.59  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=69.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK   95 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~   95 (274)
                      =++|||||+|.||..||..+...|.++++|+.+....+ .           .+.|             +... ++++ ++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            36799999999999999999999998888876544321 1           1223             1222 6655 56


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCch
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQL  136 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~i  136 (274)
                      +||+|+.++|...+.+..+-.+.-+.++++++|. |+|+-.+
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i  125 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI  125 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH
Confidence            9999999999988888876666666678888876 7877554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.42  E-value=1.3e-06  Score=75.32  Aligned_cols=82  Identities=24%  Similarity=0.406  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|.|++|.|||.|.| |..+|+.|+..|+++++.+++.            .++.+.++++|+|+.+++..   . ++..
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~---~-ii~~  103 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP---G-LVKG  103 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC---c-eecH
Confidence            5799999999999996 8889999999999655555432            25778999999999999853   2 6777


Q ss_pred             HHHhcCCCCcEEEEcCCCchhc
Q psy3240         117 ARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVd  138 (274)
                      +.   ++++.++||+|.-.-+|
T Consensus       104 ~~---~~~~~viIDla~prdvd  122 (168)
T cd01080         104 DM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             HH---ccCCeEEEEccCCCccc
Confidence            75   47899999999877776

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.40  E-value=1.2e-06  Score=81.43  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=66.4

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+|.||++.|||.|. +|+.+|+.|...|+++++.++++            .++.+.+++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~  216 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT  216 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence            4589999999999998 99999999999999887777643            2578899999999999975    23577


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      ++.   +|+|+++||+|.-
T Consensus       217 ~~~---vk~gavVIDvGi~  232 (286)
T PRK14175        217 KDV---VKEGAVIIDVGNT  232 (286)
T ss_pred             HHH---cCCCcEEEEcCCC
Confidence            664   5899999999953

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.33  E-value=2e-06  Score=85.86  Aligned_cols=94  Identities=23%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--C--------------------------
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--N--------------------------   89 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--s--------------------------   89 (274)
                      .+.+.++.|+|.|.+|...++.++.+|+.+++++.+..+.+ ++..|....  +                          
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            35578999999999999999999999998777777766544 555665431  1                          


Q ss_pred             HHHHhcccCEEEEcC--CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          90 IDDLCKQSDFIIITS--ALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        90 l~ell~~aDvVil~l--Plt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++-
T Consensus       241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            445578899999887  3322 235788999999999999999974

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.27  E-value=4.3e-06  Score=78.35  Aligned_cols=98  Identities=14%  Similarity=0.290  Sum_probs=67.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +.+++|+|||.|.||+.+++.|+..|...+...+|+.. ..  +...|....   ++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            78999999999999999999999877655554455432 22  455555433   456778899999999996443 233


Q ss_pred             ccHHHHhcC-CCCcEEEEcCCCchhcH
Q psy3240         114 INRARLESM-KPGAILINTSRGQLVDQ  139 (274)
Q Consensus       114 i~~~~l~~m-k~gailINv~RG~iVde  139 (274)
                      + +..++.. +++.++||++...-+|.
T Consensus       255 ~-~~~~~~~~~~~~~viDlavPrdi~~  280 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCCCCCch
Confidence            3 3333333 36889999996444443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG2380|consensus

Probab=98.27  E-value=2.4e-06  Score=81.01  Aligned_cols=105  Identities=19%  Similarity=0.427  Sum_probs=78.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHh-cccCEEEEcCCCCcccHHhccHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLC-KQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell-~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      -++|||||+|+||+-+|+.+...|..++ ..+|+.-.. +...|... ..+.+++ +.+|+|++|+.. ..+..++..=-
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li-~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatyp  129 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYP  129 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcC
Confidence            3579999999999999999999999544 445555444 55666654 3677766 469999999863 34555554445


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ++++|.|++++++-+-+.-..+++.+.|.+
T Consensus       130 fqrlrrgtlfvdvlSvKefek~lfekYLPk  159 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPK  159 (480)
T ss_pred             chhhccceeEeeeeecchhHHHHHHHhCcc
Confidence            677899999999999887788888886654

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.26  E-value=5.8e-06  Score=78.76  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=70.5

Q ss_pred             HHHHHHHHccCCCeEEEEeCCCCC-----hh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240          54 GLSVLEKLIPYKVSKFLYTSRSKK-----PE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA  126 (274)
Q Consensus        54 G~~iA~~L~~~G~~vv~~~~r~~~-----~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga  126 (274)
                      |..+|++|...|.++++|+++...     .. ....|+... +..+++++||+|++++|....++.++. +..+.+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence            899999999999977788765431     11 345676654 788899999999999996554777774 6778899999


Q ss_pred             EEEEcCCCchhcH-HHHHhhh
Q psy3240         127 ILINTSRGQLVDQ-EALIDFI  146 (274)
Q Consensus       127 ilINv~RG~iVde-~aL~~~L  146 (274)
                      ++||+++++.... +.+.+.+
T Consensus       111 IVId~ST~~~~~~s~~l~~~l  131 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGEL  131 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHh
Confidence            9999999987765 5665644

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=6.8e-06  Score=76.49  Aligned_cols=77  Identities=19%  Similarity=0.332  Sum_probs=64.3

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||.|. +|+.+|..|...|+.+.+..+++.            ++.+.+++||+|+.+++-.    +++.
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvi~avG~p----~~v~  217 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK------------NLRHHVRNADLLVVAVGKP----GFIP  217 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC------------CHHHHHhhCCEEEEcCCCc----cccc
Confidence            5689999999999998 999999999999998777765532            5889999999999999532    3466


Q ss_pred             HHHHhcCCCCcEEEEcC
Q psy3240         116 RARLESMKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~mk~gailINv~  132 (274)
                      .+.   +|+|+++||+|
T Consensus       218 ~~~---vk~gavVIDvG  231 (285)
T PRK10792        218 GEW---IKPGAIVIDVG  231 (285)
T ss_pred             HHH---cCCCcEEEEcc
Confidence            544   59999999999

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.23  E-value=1.7e-06  Score=74.99  Aligned_cols=98  Identities=17%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H----h-------hcC-------------Ccc-cCHHHHhccc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A----D-------KRG-------------AEH-TNIDDLCKQS   97 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~-------~~g-------------~~~-~sl~ell~~a   97 (274)
                      +|+|||.|.||+.+|..+...|+++++|+.+..... +    .       ..+             +.. .+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999998888887554221 0    0       111             112 3788887 99


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      |+|+=++|..-+.+.-+-++.-+.++++++|...+++  .....|.+
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~  124 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAA  124 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHT
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHh
Confidence            9999999988777776666777778899887544332  44455555

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.22  E-value=3e-06  Score=71.58  Aligned_cols=90  Identities=19%  Similarity=0.381  Sum_probs=61.0

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--c------CC------cc-cCHHHHhcccCEEEEcCCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--R------GA------EH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--~------g~------~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      +|+|+|.|++|.++|..|...|.++.+|.++..... ...  .      +.      .. .+++++++.+|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            699999999999999999999987777665432211 111  1      11      11 37999999999999999953


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                       ..+.++ ++....++++..+|++..|=
T Consensus        81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 -AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence             445454 45666778999999998664

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.21  E-value=3.6e-06  Score=74.39  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      ++++|||- |.||+.+++.++..|+.+.                        +++||+|++|+|.. .+..++     +.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i-----~~   50 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYI-----ES   50 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHH-----HH
Confidence            37999997 9999999999999999643                        36899999999963 333333     33


Q ss_pred             CCCCcEEEEcCCCch
Q psy3240         122 MKPGAILINTSRGQL  136 (274)
Q Consensus       122 mk~gailINv~RG~i  136 (274)
                      +.  .+++|+++-+.
T Consensus        51 ~~--~~v~Dv~SvK~   63 (197)
T PRK06444         51 YD--NNFVEISSVKW   63 (197)
T ss_pred             hC--CeEEeccccCH
Confidence            33  37999998664

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.20  E-value=3.2e-06  Score=82.40  Aligned_cols=98  Identities=21%  Similarity=0.396  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCCcc---cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGAEH---TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++.|++|+|+|.|.||+.+++.|+..|...+.+.+++... .  +...+...   .++.+.+..+|+|+.+++.   +..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            5889999999999999999999999995444444444332 2  33444322   2567788999999999764   445


Q ss_pred             hccHHHHhcCC----CCcEEEEcCCCchhcH
Q psy3240         113 LINRARLESMK----PGAILINTSRGQLVDQ  139 (274)
Q Consensus       113 li~~~~l~~mk----~gailINv~RG~iVde  139 (274)
                      +++++.++.+.    .+.+++|.+.-.=+|.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            67877776642    3469999985443443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.18  E-value=5e-06  Score=71.29  Aligned_cols=81  Identities=21%  Similarity=0.392  Sum_probs=56.8

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+...+.++            .++++.+++||+|+.++.-    .+++.
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i~   94 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLIK   94 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----ccccc
Confidence            468999999999998 599999999999999777766544            2578899999999999863    34565


Q ss_pred             HHHHhcCCCCcEEEEcCCCch
Q psy3240         116 RARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i  136 (274)
                      .+   .+|||+++||++.-..
T Consensus        95 ~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   95 AD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             GG---GS-TTEEEEE--CEEE
T ss_pred             cc---cccCCcEEEecCCccc
Confidence            54   4599999999987543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.17  E-value=7.6e-06  Score=75.34  Aligned_cols=101  Identities=19%  Similarity=0.312  Sum_probs=69.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCCChh---Hhhc-CCcc-cCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSKKPE---ADKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~~~~---a~~~-g~~~-~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      .+|+|||+|+||+++|+.|...|    .++++++++.....   .... +... .+..++++++|+|++++|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999998777    45566665543221   1222 2332 4778889999999999994 334444


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      + .+..+.++++..+|.+.-|  +..+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            4 2344456788899988766  55556766553

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=9.6e-06  Score=75.41  Aligned_cols=79  Identities=24%  Similarity=0.405  Sum_probs=63.8

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||.|. .|+++|..|...|+++.+++++.            .++.+.+++||+|+.+++ .+.   +++
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v~  217 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LIK  217 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cCC
Confidence            5689999999999998 99999999999999666665422            257777899999999996 333   576


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .+.   +++|++++|++-.
T Consensus       218 ~~~---lk~gavViDvg~n  233 (283)
T PRK14192        218 KDW---IKQGAVVVDAGFH  233 (283)
T ss_pred             HHH---cCCCCEEEEEEEe
Confidence            655   6999999999843

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.16  E-value=1e-05  Score=73.81  Aligned_cols=87  Identities=16%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC---eEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..++|+|||+|+||+++++.|...+.   +.+...++....    .+... .+..+++.+||+|++++|. ..++.++. 
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~-   75 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN----TPFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL-   75 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc----CCeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence            34689999999999999999987652   223333333211    23332 3677888899999999984 44555554 


Q ss_pred             HHHhcCCCCcEEEEcCC
Q psy3240         117 ARLESMKPGAILINTSR  133 (274)
Q Consensus       117 ~~l~~mk~gailINv~R  133 (274)
                      +..+.++++.++..++-
T Consensus        76 ~i~~~l~~~~iIS~~aG   92 (260)
T PTZ00431         76 EIKPYLGSKLLISICGG   92 (260)
T ss_pred             HHHhhccCCEEEEEeCC
Confidence            33344555555555554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=6.3e-06  Score=74.74  Aligned_cols=96  Identities=9%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCChh-Hhh-cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKPE-ADK-RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~~-a~~-~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ++|+|||+|.||+.+|+.+...|   ..+.+++++..... ... .++... +.+++++++|+|++++|.. ..+.++. 
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~-   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS-   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence            57999999999999999998877   44555554433222 222 355443 7788889999999999853 3444442 


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +....+  +.++|.+.-|-  ..+.+.+
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~  104 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLER  104 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHH
Confidence            222233  46777776553  4455555

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.15  E-value=5e-06  Score=81.04  Aligned_cols=93  Identities=20%  Similarity=0.346  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++.|++|+|+|.|.||+.+++.|+..|++.+...+++. +..  +...+....   ++.+.+..+|+|+.++|...   .
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~---~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH---P  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC---c
Confidence            58899999999999999999999999985444444443 322  344443332   45677889999999987533   4


Q ss_pred             hccHHHHhcC-----CCCcEEEEcCCC
Q psy3240         113 LINRARLESM-----KPGAILINTSRG  134 (274)
Q Consensus       113 li~~~~l~~m-----k~gailINv~RG  134 (274)
                      ++..+.++.+     .++.++||++--
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~P  282 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVP  282 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence            4666666543     356899999853

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.15  E-value=1.9e-05  Score=60.20  Aligned_cols=68  Identities=19%  Similarity=0.347  Sum_probs=53.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .++.+++++|+|.|.+|+.+++.+...+...+..+++                       |+++.+.+..    +.+.++
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-----------------------di~i~~~~~~----~~~~~~   71 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-----------------------DILVTATPAG----VPVLEE   71 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------------CEEEEcCCCC----CCchHH
Confidence            4689999999999999999999999885434444444                       9999998753    334455


Q ss_pred             HHhcCCCCcEEEEcC
Q psy3240         118 RLESMKPGAILINTS  132 (274)
Q Consensus       118 ~l~~mk~gailINv~  132 (274)
                      ..+.+++++++++++
T Consensus        72 ~~~~~~~~~~v~~~a   86 (86)
T cd05191          72 ATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHhcCCCCEEEecC
Confidence            678889999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.15  E-value=4.1e-05  Score=68.85  Aligned_cols=91  Identities=15%  Similarity=0.310  Sum_probs=67.8

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCe--E-EEEeCC----CCCh-------h--HhhcCC-cc-cCHHHHhcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVS--K-FLYTSR----SKKP-------E--ADKRGA-EH-TNIDDLCKQSD   98 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~--v-v~~~~r----~~~~-------~--a~~~g~-~~-~sl~ell~~aD   98 (274)
                      |.+++++++.|+|.|.+|+.+|+.|...|++  . ++++++    ..+.       .  +...+. .. .++.+.++++|
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d   99 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD   99 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence            4578999999999999999999999999986  4 455544    1221       1  222211 11 36778888999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      +|+.+.|     .++++.+.++.|.++.++.+.+
T Consensus       100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311         100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeC
Confidence            9999887     2667788899999999988887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=9.1e-06  Score=75.69  Aligned_cols=78  Identities=17%  Similarity=0.368  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||.|. +|+.+|..|...|+.+.+.+.++.            ++.+..++||+|+.++.-    .+++.
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvv~AvG~----p~~i~  222 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD------------DLKKYTLDADILVVATGV----KHLIK  222 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC------------CHHHHHhhCCEEEEccCC----ccccC
Confidence            5689999999999998 999999999999997777765432            578889999999997753    24676


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.   +|+|+++||+|.
T Consensus       223 ~~~---vk~gavVIDvGi  237 (287)
T PRK14176        223 ADM---VKEGAVIFDVGI  237 (287)
T ss_pred             HHH---cCCCcEEEEecc
Confidence            664   589999999985

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.14  E-value=5.5e-06  Score=76.30  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=77.1

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh--HhhcCC----cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGA----EH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~g~----~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      +.++.++++.|+|.|.+|++++..|...|+..+.+.+|+. +.+  +...+.    .. .++.+.+..+|+|+.++|..-
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~  197 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM  197 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence            4578999999999999999999999999954444444443 222  222221    11 234567789999999999754


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ....-...-.++.++++++++|+.-...  +..|.+.-+++|+..+|
T Consensus       198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~--~T~ll~~A~~~G~~~~~  242 (278)
T PRK00258        198 SGELPLPPLPLSLLRPGTIVYDMIYGPL--PTPFLAWAKAQGARTID  242 (278)
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEeecCCC--CCHHHHHHHHCcCeecC
Confidence            2110001112245688999999976442  35677777788887666

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.14  E-value=2.3e-05  Score=65.73  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=66.8

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      |.+++||+|.|+|- ...|+.+|..|...|+.+...+.++.            ++++.+++||+|+.+++..    ++++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~------------~l~~~v~~ADIVvsAtg~~----~~i~   86 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI------------QLQSKVHDADVVVVGSPKP----EKVP   86 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCCC----CccC
Confidence            57899999999997 57899999999999997777764432            6788999999999999854    5577


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.   +|||++++|++...
T Consensus        87 ~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          87 TEW---IKPGATVINCSPTK  103 (140)
T ss_pred             HHH---cCCCCEEEEcCCCc
Confidence            766   58999999999766

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.14  E-value=8.1e-06  Score=75.78  Aligned_cols=79  Identities=18%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++|++|.|+|.+ ..|+.+|..|...|+.+.+..+++            .++.+.+++||+|+.+++..    +++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~  210 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFIT  210 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence            568999999999999 999999999999999777776543            25889999999999999632    6788


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      ++.+   |||+++||+|-.
T Consensus       211 ~~~v---k~GavVIDVgi~  226 (279)
T PRK14178        211 PDMV---KPGATVIDVGIN  226 (279)
T ss_pred             HHHc---CCCcEEEEeecc
Confidence            7775   999999999943

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.13  E-value=3.7e-06  Score=74.54  Aligned_cols=108  Identities=12%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             CCCEEEEEccChHHHHHHHHH--ccCCCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcc--cCEEEEcCCCCcc---
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKL--IPYKVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQ--SDFIIITSALTPD---  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L--~~~G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~--aDvVil~lPlt~~---  109 (274)
                      ..++|+|||+|.+|+.+++.+  ...|++.+++.++.+... ....+..   ..++++++++  .|+|++++|....   
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            346899999999999999863  357887776654433221 1112221   1267788765  9999999998654   


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ...+.......-|...++.+|+.+|.+|+.++|...|..
T Consensus       163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence            222333333444666788899999999999999987765

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.12  E-value=7.8e-06  Score=76.72  Aligned_cols=110  Identities=20%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hhh---cC--Ccc-cCHHHHhcccCEEEEcCCCCcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--ADK---RG--AEH-TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~~---~g--~~~-~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ...++|+|||+|.+|+.+++.+.. ++.+.+.+++|+... .  +..   .+  +.. .++++++++||+|+++.|..  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            357899999999999999986653 565555555555433 2  222   13  333 37889999999998888754  


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                       ..++..+   .++||+ +||+.-........+-..+.++...++|-
T Consensus       201 -~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~  242 (314)
T PRK06141        201 -EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT  242 (314)
T ss_pred             -CCEecHH---HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence             4566654   458998 55543333333333333333344556663

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=8.9e-06  Score=75.71  Aligned_cols=79  Identities=15%  Similarity=0.245  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||+|.|||-| .+|+.+|..|...|+.+.+...++.            ++.+.+++||+|+.+++.    .+++.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~------------~l~~~~~~ADIvV~AvG~----p~~i~  215 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK------------DLSFYTQNADIVCVGVGK----PDLIK  215 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH------------HHHHHHHhCCEEEEecCC----CCcCC
Confidence            568999999999999 9999999999999997777654331            467899999999999963    34677


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .+.+   |+|+++||+|-.
T Consensus       216 ~~~v---k~GavVIDvGi~  231 (285)
T PRK14191        216 ASMV---KKGAVVVDIGIN  231 (285)
T ss_pred             HHHc---CCCcEEEEeecc
Confidence            7765   999999999853

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=1.4e-05  Score=71.28  Aligned_cols=99  Identities=10%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC---Ce-EEEEeCCCCC-hh--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK---VS-KFLYTSRSKK-PE--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G---~~-vv~~~~r~~~-~~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +.++|+|||.|+||+.+++.+...|   .+ +++++++..+ ..  ....++.. .+++++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            4578999999999999999987655   33 3344433222 22  23345543 37889999999999999953 3344


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++. +.-+.++ +.++|.++-|  +..+.|.+
T Consensus        82 v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~  109 (245)
T PRK07634         82 LLA-ELSPLLS-NQLVVTVAAG--IGPSYLEE  109 (245)
T ss_pred             HHH-HHHhhcc-CCEEEEECCC--CCHHHHHH
Confidence            442 2222334 5688888655  44445555

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.10  E-value=1e-05  Score=75.85  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-----------------cc-CHHHHhcccCEEEEcC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-----------------HT-NIDDLCKQSDFIIITS  104 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-----------------~~-sl~ell~~aDvVil~l  104 (274)
                      ++|+|||.|.||..+|..|...|.++++++++.........+..                 .. +. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            57999999999999999999999988777753221112223321                 12 33 5678899999999


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      |. +....++ .+..+.+++++++|.+.-| +...+.+.+.+.+
T Consensus        82 k~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~  122 (341)
T PRK08229         82 KS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPG  122 (341)
T ss_pred             cC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC
Confidence            85 4455555 3456667899999988543 3344556554443

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.09  E-value=1.5e-05  Score=72.98  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=77.4

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc---CC-cccCHHHH-hcccCEEEEcCCCC--c
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR---GA-EHTNIDDL-CKQSDFIIITSALT--P  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~---g~-~~~sl~el-l~~aDvVil~lPlt--~  108 (274)
                      ....+++++|+|.|.+|++++..|...|.++++++++..+.+  +...   +. ...++++. +.++|+|+.++|..  +
T Consensus       113 ~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~  192 (270)
T TIGR00507       113 PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSG  192 (270)
T ss_pred             CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCC
Confidence            346689999999999999999999999986566554333222  1211   21 22344443 35799999999975  2


Q ss_pred             ccHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         109 DTHH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       109 ~T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .... .++   .+.++++.+++|+.......  .|.+..+++|+.++|
T Consensus       193 ~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd  235 (270)
T TIGR00507       193 NIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID  235 (270)
T ss_pred             CCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence            2211 222   24478999999998766433  688888899998887

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.08  E-value=1.1e-05  Score=71.60  Aligned_cols=90  Identities=16%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hh-------cCC----cccCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DK-------RGA----EHTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~-------~g~----~~~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+||| .|+||+.+|+.|...|.++++++++..+.. . ..       .+.    ...+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            4799997 999999999999999987777755433322 1 11       121    1236678899999999999953 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      ....++. +.-..++ +.++|++.-|-
T Consensus        80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi  104 (219)
T TIGR01915        80 HVLKTLE-SLRDELS-GKLVISPVVPL  104 (219)
T ss_pred             HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence            3334432 2223344 58999987653

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN00203 glutamyl-tRNA reductase

Probab=98.08  E-value=6.9e-06  Score=82.29  Aligned_cols=94  Identities=14%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc-CC--cc---cCHHHHhcccCEEEEcCCCCcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR-GA--EH---TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~-g~--~~---~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++.+++|+|||.|.||+.+++.|...|++.+...+|+... .  +... +.  ..   .++.+.+.++|+|+.++|.   
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence            5889999999999999999999999997544444454333 2  2222 22  11   2566788999999998874   


Q ss_pred             cHHhccHHHHhcCCC-------CcEEEEcCCCc
Q psy3240         110 THHLINRARLESMKP-------GAILINTSRGQ  135 (274)
Q Consensus       110 T~~li~~~~l~~mk~-------gailINv~RG~  135 (274)
                      ...++.++.++.+++       ..++||.+=-.
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            445678888877643       24899998543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.06  E-value=1.1e-05  Score=80.72  Aligned_cols=95  Identities=23%  Similarity=0.399  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--CH-------------------------
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--NI-------------------------   90 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--sl-------------------------   90 (274)
                      ...+.+|.|+|.|.+|...++.++.+|++++++|.+..+.+ +++.|++..  +.                         
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            35699999999999999999999999998778887776555 666777532  11                         


Q ss_pred             -HHHhcccCEEEEcCCCCcc-cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          91 -DDLCKQSDFIIITSALTPD-THHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        91 -~ell~~aDvVil~lPlt~~-T~~li~~~~l~~mk~gailINv~R  133 (274)
                       .+.++.+|+|+.+...... ...++.++.++.||+|.+++++|-
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence             1112569999998864221 234557889999999999999984

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.02  E-value=3.9e-05  Score=67.76  Aligned_cols=95  Identities=21%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhH--hh--cCCcc-c----CHHHHhcccCEEEEcCCC
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEA--DK--RGAEH-T----NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a--~~--~g~~~-~----sl~ell~~aDvVil~lPl  106 (274)
                      |.+++||++.|||-+ .+|+.+|..|...|+.+.+.+.+.-....  ..  ..... .    ++.+.+++||+|+.+++.
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~  136 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS  136 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence            568999999999986 67999999999999987777533211100  00  00010 1    277899999999999984


Q ss_pred             CcccHHh-ccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         107 TPDTHHL-INRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       107 t~~T~~l-i~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      .    ++ +..+.+   |+|+++||+|--.-+|
T Consensus       137 ~----~~~i~~d~i---k~GavVIDVGi~~dvd  162 (197)
T cd01079         137 P----NYKVPTELL---KDGAICINFASIKNFE  162 (197)
T ss_pred             C----CCccCHHHc---CCCcEEEEcCCCcCcc
Confidence            3    34 666665   8999999999665444

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=2.1e-05  Score=73.14  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=64.2

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+...++.            ++.+..++||+|+.++.-    .+++.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~------------~l~~~~~~ADIvV~AvGk----p~~i~  215 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTK------------DLKAHTKKADIVIVGVGK----PNLIT  215 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCc----ccccC
Confidence            568999999999998 8999999999988997666544332            578899999999999863    35677


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+++   |+|+++||+|-
T Consensus       216 ~~~v---k~gavvIDvGi  230 (281)
T PRK14183        216 EDMV---KEGAIVIDIGI  230 (281)
T ss_pred             HHHc---CCCcEEEEeec
Confidence            7665   89999999994

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.98  E-value=4.6e-05  Score=68.67  Aligned_cols=113  Identities=16%  Similarity=0.256  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Ch-h---H-hhcC-------CcccCHHHHh-cc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KP-E---A-DKRG-------AEHTNIDDLC-KQ   96 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~-~---a-~~~g-------~~~~sl~ell-~~   96 (274)
                      .+|+|++|+|.|+|++|+.+|+.|..+|++++.+.+...        .. .   . ...+       ....+.++++ .+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            578999999999999999999999999998775555421        11 1   1 1112       1222334443 36


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      ||+++-|.+.     +.++.+..++++ =.+++-.+-+.+ . ....+.|+++|+.++ |.+.
T Consensus       107 ~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~PD~~a  161 (227)
T cd01076         107 CDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVVPDILA  161 (227)
T ss_pred             ccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEChHHh
Confidence            8999988865     446777777776 345555555555 4 445577888877653 4444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=4.2e-05  Score=71.20  Aligned_cols=81  Identities=21%  Similarity=0.477  Sum_probs=66.2

Q ss_pred             CCCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          36 CGPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .|.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++.            ++.+..++||+|+.+++-    .+++
T Consensus       151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~----~~~i  214 (284)
T PRK14170        151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK------------DLPQVAKEADILVVATGL----AKFV  214 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCcc
Confidence            3578999999999986 6799999999989997777665442            578899999999999974    2467


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q psy3240         115 NRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~  135 (274)
                      ..+.+   |+|+++||+|.-.
T Consensus       215 ~~~~v---k~GavVIDvGin~  232 (284)
T PRK14170        215 KKDYI---KPGAIVIDVGMDR  232 (284)
T ss_pred             CHHHc---CCCCEEEEccCcc
Confidence            77665   8999999999654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.97  E-value=1.9e-05  Score=76.87  Aligned_cols=92  Identities=23%  Similarity=0.394  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +|+++++.|||.|.||..+|+.|...|.+.+...+|+....   +.+.++.+.   ++.+.+.++|+|+.++.   +...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            49999999999999999999999999987777777776543   667776665   45567899999999765   3445


Q ss_pred             hccHHHHhcC---CCCcEEEEcCC
Q psy3240         113 LINRARLESM---KPGAILINTSR  133 (274)
Q Consensus       113 li~~~~l~~m---k~gailINv~R  133 (274)
                      ++..+.+...   ++.-++||.+=
T Consensus       252 ii~~~~ve~a~~~r~~~livDiav  275 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAV  275 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecC
Confidence            5655544333   12257888873

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.96  E-value=4e-05  Score=76.07  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=72.7

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHH--hcccCEEEEcCCCCcccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDL--CKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~el--l~~aDvVil~lPlt~~T~~  112 (274)
                      |.++++++++|+|.|.+|++++..|...|++++++++...+.+  +...+....+++++  +.++|+|++|+|....   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            4578899999999999999999999999996666554332222  22222222333332  5789999999998643   


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       +. ..+.     .+++|+.-.....  .+.+..+++|+..+|
T Consensus       404 -~~-~~l~-----~~v~D~~Y~P~~T--~ll~~A~~~G~~~~~  437 (477)
T PRK09310        404 -IP-KAFP-----PCVVDINTLPKHS--PYTQYARSQGSSIIY  437 (477)
T ss_pred             -ch-hHHh-----hhEEeccCCCCCC--HHHHHHHHCcCEEEC
Confidence             22 2222     3899998766432  377878888887766

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=4.3e-05  Score=71.16  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=66.3

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||- ..+|+.+|..|...|+.+.+.+.++            .++.+.+++||+|+.++..    .++++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i~  216 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLIT  216 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence            56899999999997 5789999999999999777765443            2688899999999999953    34788


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.+   |+|+++||+|.-.
T Consensus       217 ~~~i---k~gavVIDvGi~~  233 (284)
T PRK14190        217 ADMV---KEGAVVIDVGVNR  233 (284)
T ss_pred             HHHc---CCCCEEEEeeccc
Confidence            8776   8999999998654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.96  E-value=2.6e-05  Score=71.95  Aligned_cols=96  Identities=20%  Similarity=0.376  Sum_probs=67.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC---eEEEEeCCCCChh---HhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRSKKPE---ADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~~~~~---a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ++|||||+|+||++++.-|...|.   ..+.+.++.....   ...+|+. ..+..++..++|+|++++..  +    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence            589999999999999999998882   3455555554332   4456666 34677899999999999964  2    12


Q ss_pred             HHHHhcCC---CCcEEEEcCCCchhcHHHHHhhh
Q psy3240         116 RARLESMK---PGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       116 ~~~l~~mk---~gailINv~RG~iVde~aL~~~L  146 (274)
                      .+.++.++   ++.++|.++-|-  ..+.|.++|
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l  107 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLL  107 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHc
Confidence            34555555   789999998764  445555544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.95  E-value=2e-05  Score=68.79  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC---------------------Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG---------------------AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g---------------------~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||+|.+|..+|..|...|.+++++|....+-.....|                     ... .+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            689999999999999999999999888888655422211111                     112 2677788999999


Q ss_pred             EEcCCCCccc------HHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHH
Q psy3240         101 IITSALTPDT------HHLI--NRARLESMKPGAILINTSRGQLVDQEALI  143 (274)
Q Consensus       101 il~lPlt~~T------~~li--~~~~l~~mk~gailINv~RG~iVde~aL~  143 (274)
                      ++|+|.....      ..+.  -....+.++++.++|.-|+..+=-.+.+.
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~  131 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELL  131 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhh
Confidence            9999843222      2222  23456678999999999997775555333

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=4.8e-05  Score=70.94  Aligned_cols=89  Identities=19%  Similarity=0.341  Sum_probs=69.7

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++.            ++.+..++||+|+.++.-    .+++.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~------------~L~~~~~~ADIvV~AvGk----p~~i~  217 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH------------NLSSITSKADIVVAAIGS----PLKLT  217 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----CCccC
Confidence            568999999999985 6799999999988997766665442            588899999999999973    25777


Q ss_pred             HHHHhcCCCCcEEEEcC-----CCch---hcHHHHHh
Q psy3240         116 RARLESMKPGAILINTS-----RGQL---VDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~-----RG~i---Vde~aL~~  144 (274)
                      .+.+   |+|+++||+|     .|++   ||.++..+
T Consensus       218 ~~~v---k~GavVIDvGin~~~~gkl~GDVd~~~v~~  251 (288)
T PRK14171        218 AEYF---NPESIVIDVGINRISGNKIIGDVDFENVKS  251 (288)
T ss_pred             HHHc---CCCCEEEEeeccccCCCCeECCccHHHHHh
Confidence            7765   8999999998     3455   45455444

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=4.3e-05  Score=71.21  Aligned_cols=80  Identities=20%  Similarity=0.414  Sum_probs=65.9

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++.            ++.+..++||+|+.++.-    .++++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~------------~l~~~~~~ADIvIsAvGk----p~~i~  213 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ------------DLPAVTRRADVLVVAVGR----PHLIT  213 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccC
Confidence            568999999999975 6899999999988997777665542            578899999999999963    25677


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.+   |+|+++||+|.-.
T Consensus       214 ~~~v---k~GavVIDVGin~  230 (287)
T PRK14173        214 PEMV---RPGAVVVDVGINR  230 (287)
T ss_pred             HHHc---CCCCEEEEccCcc
Confidence            7765   8999999999644

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.91  E-value=3.4e-05  Score=75.35  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcC-Cccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRG-AEHT---NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g-~~~~---sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .++.|+++.|||.|.||+.+|+.|...|+..+...+|+....   +...+ ....   ++.+.+.++|+|+.|++..   
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---  253 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---  253 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---
Confidence            358899999999999999999999999986677777765332   33333 3322   4567789999999998753   


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         111 HHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ..+|..+...  .+..++||.+=-
T Consensus       254 ~~vi~~~~~~--~~~~~~iDLavP  275 (414)
T PRK13940        254 EYIVTCKYVG--DKPRVFIDISIP  275 (414)
T ss_pred             CeeECHHHhC--CCCeEEEEeCCC
Confidence            3456655543  244688888743

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.91  E-value=6.6e-05  Score=68.74  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-----------cc-CHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-----------HT-NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-----------~~-sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|+|||.|.||..+|..|...|.++.+++++....+ ..+.|..           .. +..++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            4799999999999999999988987777776444333 2233431           12 45555 8899999999953 4


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      +..++ +...+.+.+++.+|...-| +-.++.+.+.+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~  114 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIG  114 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcC
Confidence            55554 2344556778888877666 223445555443

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=4.8e-05  Score=70.84  Aligned_cols=78  Identities=19%  Similarity=0.330  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+.+.++.            ++.+..++||+|+.++.-    .+++.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~------------~l~~~~~~ADIvIsAvGk----~~~i~  217 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ------------NLPSIVRQADIIVGAVGK----PEFIK  217 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEeCCC----cCccC
Confidence            568999999999975 7899999999999997777765543            578889999999999863    34577


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       218 ~~~i---k~gavVIDvGi  232 (284)
T PRK14177        218 ADWI---SEGAVLLDAGY  232 (284)
T ss_pred             HHHc---CCCCEEEEecC
Confidence            7665   89999999995

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=4.9e-05  Score=70.70  Aligned_cols=78  Identities=22%  Similarity=0.427  Sum_probs=64.7

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++.            ++.+..++||+|+.+++-    .++++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~----p~~i~  214 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR------------NLKQLTKEADILVVAVGV----PHFIG  214 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999985 6799999999999997777665542            588899999999999974    24577


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+++   |+|+++||+|-
T Consensus       215 ~~~v---k~GavVIDvGi  229 (282)
T PRK14169        215 ADAV---KPGAVVIDVGI  229 (282)
T ss_pred             HHHc---CCCcEEEEeec
Confidence            7765   89999999985

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=7.3e-05  Score=69.44  Aligned_cols=78  Identities=22%  Similarity=0.458  Sum_probs=64.4

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+.++++.            ++.+..++||+|+.+++-    .+++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~------------~l~~~~~~ADIvIsAvGk----p~~i~  216 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK------------NLKEVCKKADILVVAIGR----PKFID  216 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCccC
Confidence            568999999999975 6899999999999997777665432            588899999999999974    24677


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       217 ~~~i---k~gavVIDvGi  231 (278)
T PRK14172        217 EEYV---KEGAIVIDVGT  231 (278)
T ss_pred             HHHc---CCCcEEEEeec
Confidence            7764   89999999974

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.89  E-value=4.7e-05  Score=66.04  Aligned_cols=100  Identities=20%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc----CCc-----c---cCHHHHhcccCEEE
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR----GAE-----H---TNIDDLCKQSDFII  101 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~----g~~-----~---~sl~ell~~aDvVi  101 (274)
                      |.+++++++.|+|. |.+|+.+++.|...|.++++++++..+..  ....    +..     .   .++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            45789999999995 99999999999988986666654332221  1111    111     1   13346788999999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      .+.|....+  ..  ..-...+++.+++|+.+...++.+
T Consensus       103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~~~~  137 (194)
T cd01078         103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPVGIE  137 (194)
T ss_pred             ECCCCCcee--ch--hhhcccCceeEEEEccCCCCCCcc
Confidence            999875541  11  111234568899999987766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.89  E-value=0.00011  Score=65.87  Aligned_cols=107  Identities=13%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC----------Chh--Hhhc-CCcc------cCHHHHh-ccc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK----------KPE--ADKR-GAEH------TNIDDLC-KQS   97 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~----------~~~--a~~~-g~~~------~sl~ell-~~a   97 (274)
                      .+|.|++|.|.|+|++|+.+|+.|...|.+++...+...          ...  ..+. ++..      .+-++++ ..|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            478999999999999999999999999997777666554          211  1111 1111      1223433 368


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                      |+++-|.+.+     +++.+....++ =.+++-.+-+.+-+  .-.+.|+++|+.
T Consensus        99 DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            9999988753     67777777776 34566666666554  334556666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=5.2e-05  Score=70.98  Aligned_cols=80  Identities=18%  Similarity=0.384  Sum_probs=65.6

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      |.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++.            ++.+..++||+|+.+++- +   +++.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvIsAvGk-p---~~i~  216 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ------------DLASITREADILVAAAGR-P---NLIG  216 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC-c---CccC
Confidence            568999999999975 6799999999999997777655432            578899999999999973 2   4677


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.+   |+|+++||+|--.
T Consensus       217 ~~~i---k~gavVIDvGin~  233 (297)
T PRK14186        217 AEMV---KPGAVVVDVGIHR  233 (297)
T ss_pred             HHHc---CCCCEEEEecccc
Confidence            7665   8999999998544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.88  E-value=4.5e-05  Score=72.51  Aligned_cols=86  Identities=22%  Similarity=0.268  Sum_probs=63.0

Q ss_pred             EEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcCCc------------------cc-CHHHHhcccCEEE
Q psy3240          45 VGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRGAE------------------HT-NIDDLCKQSDFII  101 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g~~------------------~~-sl~ell~~aDvVi  101 (274)
                      |||+|+|.||+.+++.+.. -+++++++.+......   +...++.                  .. ++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999764 4677776666433311   2222211                  12 6899999999999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .|.|   .+.+..+++.+.+|+++++|+-.-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            9876   5667889999999999999987543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.87  E-value=0.00024  Score=70.59  Aligned_cols=105  Identities=13%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChhHhhc------------------C--Ccc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKR------------------G--AEH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~a~~~------------------g--~~~-~sl~ell~~aDv   99 (274)
                      ++|+|||+|.+|..+|..|...  |.+++++|....+-.....                  +  ... .+.++.++.||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5799999999999999999865  5778888765443221111                  1  112 256778899999


Q ss_pred             EEEcCCCCc-----------ccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         100 IIITSALTP-----------DTHHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       100 Vil~lPlt~-----------~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      +++|+|...           +...+..  ++.-+.++++.++|.-|+..+=-.+.+.+.|.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~  142 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILT  142 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHH
Confidence            999997321           1112322  34566789999999999877656667766443

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.86  E-value=6.8e-05  Score=70.29  Aligned_cols=78  Identities=22%  Similarity=0.400  Sum_probs=65.3

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+...++.            ++++..++||+|+.++.- +   +++.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~------------nl~~~~~~ADIvv~AvGk-~---~~i~  225 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP------------DPESIVREADIVIAAAGQ-A---MMIK  225 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC-c---CccC
Confidence            578999999999986 5799999999999997777765432            588899999999999864 2   6788


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       226 ~~~v---k~gavVIDvGi  240 (299)
T PLN02516        226 GDWI---KPGAAVIDVGT  240 (299)
T ss_pred             HHHc---CCCCEEEEeec
Confidence            7765   89999999984

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.86  E-value=3.9e-05  Score=71.11  Aligned_cols=78  Identities=24%  Similarity=0.461  Sum_probs=64.3

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +-+|+||++.|||-++ +|+.+|..|...++.+.+...+++            ++.+..++||+|+.++-    -.+++.
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~------------~l~~~~k~ADIvv~AvG----~p~~i~  214 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK------------DLASITKNADIVVVAVG----KPHFIK  214 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC------------CHHHHhhhCCEEEEecC----Cccccc
Confidence            5689999999999986 599999999999997777766543            57888999999999884    335666


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      ++.   .|+|+++||+|-
T Consensus       215 ~d~---vk~gavVIDVGi  229 (283)
T COG0190         215 ADM---VKPGAVVIDVGI  229 (283)
T ss_pred             ccc---ccCCCEEEecCC
Confidence            554   599999999985

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=6.1e-05  Score=70.06  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=64.6

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+...++.            ++.+..++||+|+.++.-    .+++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~------------nl~~~~~~ADIvIsAvGk----p~~i~  215 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK------------DLSLYTRQADLIIVAAGC----VNLLR  215 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCccC
Confidence            568999999999985 6799999999988997776665442            588899999999999963    34677


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       216 ~~~v---k~GavVIDvGi  230 (282)
T PRK14166        216 SDMV---KEGVIVVDVGI  230 (282)
T ss_pred             HHHc---CCCCEEEEecc
Confidence            7765   89999999983

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.84  E-value=7.8e-05  Score=68.51  Aligned_cols=101  Identities=17%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--------------ccCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--------------HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--------------~~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||..+|..|...|.+++++++ ....+ ..+.|..              ..+.++..+.+|+|++++|. 
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence            4799999999999999999988987777766 33222 2222221              12455667889999999995 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      .+++.++ ++..+.+++++++|.+.-| +-..+.+.+.+.
T Consensus        79 ~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~  116 (305)
T PRK12921         79 YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFG  116 (305)
T ss_pred             cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCC
Confidence            3455544 3444456778888877554 334556666443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=7e-05  Score=70.05  Aligned_cols=78  Identities=18%  Similarity=0.354  Sum_probs=64.9

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+.+.++.            ++.+..++||+|+.++.-    .+++.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~------------~l~~~~~~ADIvVsAvGk----p~~i~  218 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATR------------DLADYCSKADILVAAVGI----PNFVK  218 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999975 6899999999999997777765442            578899999999999974    24577


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       219 ~~~i---k~gaiVIDVGi  233 (294)
T PRK14187        219 YSWI---KKGAIVIDVGI  233 (294)
T ss_pred             HHHc---CCCCEEEEecc
Confidence            7765   89999999984

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=7.2e-05  Score=69.59  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +-++.||++.|||-+ .+|+++|..|...++.+.++.+++.            ++.+..++||+|+.+++-    .+++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~------------nl~~~~~~ADIvI~AvGk----~~~i~  215 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA------------DLAGEVGRADILVAAIGK----AELVK  215 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccC
Confidence            568999999999975 6899999999988997777655432            578899999999999973    35677


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .+.+   |+|+++||+|--
T Consensus       216 ~~~i---k~gaiVIDvGin  231 (282)
T PRK14182        216 GAWV---KEGAVVIDVGMN  231 (282)
T ss_pred             HHHc---CCCCEEEEeece
Confidence            7765   899999999843

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.83  E-value=6.3e-05  Score=72.05  Aligned_cols=78  Identities=19%  Similarity=0.368  Sum_probs=64.9

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...++.+.+...++.            ++.+..++||+|+.++.-    .+++.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~------------nl~~~~r~ADIVIsAvGk----p~~i~  289 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITREADIIISAVGQ----PNMVR  289 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCcCC
Confidence            568999999999975 6799999999999997777765442            588899999999999963    34677


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       290 ~d~v---K~GAvVIDVGI  304 (364)
T PLN02616        290 GSWI---KPGAVVIDVGI  304 (364)
T ss_pred             HHHc---CCCCEEEeccc
Confidence            7765   89999999984

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=7.8e-05  Score=69.38  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+ .+|+.+|..|...|+.+.+...++.            ++.+..++||+|+.+++-    .+++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~------------dl~~~~k~ADIvIsAvGk----p~~i~  216 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT------------DLKSHTTKADILIVAVGK----PNFIT  216 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC------------CHHHHhhhcCEEEEccCC----cCcCC
Confidence            568999999999975 6899999999999997777765442            577889999999999974    24577


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       217 ~~~v---k~gavVIDvGi  231 (282)
T PRK14180        217 ADMV---KEGAVVIDVGI  231 (282)
T ss_pred             HHHc---CCCcEEEEecc
Confidence            7664   89999999984

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.82  E-value=0.0001  Score=67.60  Aligned_cols=115  Identities=13%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H------h-hc------------CCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A------D-KR------------GAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a------~-~~------------g~~~~   88 (274)
                      +.+|+|+||.|-|+|++|+.+|+.|...|++++.+.+....        .. .      + ..            +.+..
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            46899999999999999999999999999988755542110        00 0      0 00            13334


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      +.++++ ..|||++-|.     +.+.|+.+..++++  +=.+++-.+-+.+-.  +..+.|+++|+.++ |.+.
T Consensus       113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~vvPD~la  179 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLFAPGKAA  179 (254)
T ss_pred             CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEEECchhh
Confidence            555554 4699988874     55778888877774  344666677777644  34466778777653 3443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=8.9e-05  Score=69.04  Aligned_cols=80  Identities=18%  Similarity=0.328  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHcc--CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~--~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +.++.||++.|||- +.+|+.+|..|..  .++.+.+...++            .++.+..++||+|+.++.-.    ++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~~  216 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----HL  216 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----Cc
Confidence            56899999999997 5789999999987  788776665543            26889999999999999742    46


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCc
Q psy3240         114 INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~  135 (274)
                      +..+.+   |+|+++||+|.-.
T Consensus       217 i~~~~i---k~GavVIDvGin~  235 (284)
T PRK14193        217 VTADMV---KPGAAVLDVGVSR  235 (284)
T ss_pred             cCHHHc---CCCCEEEEccccc
Confidence            777765   8999999999543

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.79  E-value=8.1e-05  Score=70.91  Aligned_cols=78  Identities=19%  Similarity=0.377  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++||++.|||-+ .+|+.+|..|...|+.+.+...++.            ++.+..++||+|+.++.-    .+++.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~------------nl~~~~~~ADIvIsAvGk----p~~v~  272 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK------------DPEQITRKADIVIAAAGI----PNLVR  272 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999986 5799999999999997777765542            578899999999999863    34677


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .+.+   |+|+++||+|-
T Consensus       273 ~d~v---k~GavVIDVGi  287 (345)
T PLN02897        273 GSWL---KPGAVVIDVGT  287 (345)
T ss_pred             HHHc---CCCCEEEEccc
Confidence            7765   89999999984

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=0.00042  Score=67.12  Aligned_cols=105  Identities=22%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC---------------------CcccCHHHHhcccCEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG---------------------AEHTNIDDLCKQSDFII  101 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g---------------------~~~~sl~ell~~aDvVi  101 (274)
                      .+|||||+|-||-++|..+...|.+++++|-+..+-.....|                     .+..+--+.++.||+++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i   89 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI   89 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence            799999999999999999999999999998665432211111                     11222223355899999


Q ss_pred             EcCCCCcccH-------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         102 ITSALTPDTH-------HLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       102 l~lPlt~~T~-------~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      +|+| ||-+.       .+.+  +...+.|++|.++|==|+..+=-.+.++..|.+
T Consensus        90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence            9999 44332       2222  245677999999999888777777888775543

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.77  E-value=9.7e-05  Score=70.37  Aligned_cols=98  Identities=12%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .++.+++|.|||.|.||+.+|+.|...|.+.+.+.+|+....  ..+-......+...++|+|+.+...|.....++..+
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~--~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~  247 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL--PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWE  247 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc--chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence            369999999999999999999999999987777777775321  010000112245678999999743343444556666


Q ss_pred             HHhcCCCCcEEEEcCCCchhc
Q psy3240         118 RLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVd  138 (274)
                      .++..++ .++||.+=-.=||
T Consensus       248 ~~~~~~~-r~~iDLAvPRdId  267 (338)
T PRK00676        248 SLADIPD-RIVFDFNVPRTFP  267 (338)
T ss_pred             HHhhccC-cEEEEecCCCCCc
Confidence            6655433 4899988443343

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.77  E-value=0.0001  Score=70.31  Aligned_cols=98  Identities=21%  Similarity=0.355  Sum_probs=69.1

Q ss_pred             CCCCCCCCEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcC-CcccCHHHHhcccCEEEEcCCCCcc
Q psy3240          36 CGPALQNSTVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRG-AEHTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g-~~~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      .|.++++++|.|+|. |.||+.+|+.|.. .|.+.++..+|.....   +.+.+ ....++++.++++|+|+.+.-.   
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~---  225 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM---  225 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence            456899999999998 8999999999964 5654444444543222   22222 2334788999999999886643   


Q ss_pred             cHH-hccHHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         110 THH-LINRARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       110 T~~-li~~~~l~~mk~gailINv~RG~iVde  139 (274)
                      ... +++.+.+   +++.++||.|+-.=||.
T Consensus       226 ~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        226 PKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            224 3677644   79999999999776664

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.76  E-value=0.00016  Score=68.08  Aligned_cols=94  Identities=20%  Similarity=0.224  Sum_probs=67.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcCC-------------ccc-CHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRGA-------------EHT-NIDDLCK   95 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g~-------------~~~-sl~ell~   95 (274)
                      -++|+|||.|.||+.+|..+...|..++.+|.+.....            ..+.|.             ... ++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            47999999999999999999887798888887633211            011111             111 222 688


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCch
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQL  136 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~i  136 (274)
                      .||+|+=++|-+-+.++-+-++.=+..+|+++| -|+|+-.+
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~i  123 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSI  123 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCH
Confidence            999999999988888876666666778899988 67776443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.76  E-value=3.7e-05  Score=82.42  Aligned_cols=128  Identities=10%  Similarity=0.154  Sum_probs=92.3

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------------------------hhH-hhcC----C--
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------------------------PEA-DKRG----A--   85 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------------------------~~a-~~~g----~--   85 (274)
                      .+.-.+|.|+|.|+.|+..++.+.++|++ . .++ .+-                          ... ...+    .  
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~-~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~  276 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEP-SKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDK  276 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCH-HHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccch
Confidence            34457899999999999999999988774 2 110 000                          000 0000    0  


Q ss_pred             --------ccc-C-HHHHhcccCEEEEcCCCCcccHHhccHH-HHhcCCCCc----EEEEcCCCchhcHHHHHhhhhhhh
Q psy3240          86 --------EHT-N-IDDLCKQSDFIIITSALTPDTHHLINRA-RLESMKPGA----ILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus        86 --------~~~-s-l~ell~~aDvVil~lPlt~~T~~li~~~-~l~~mk~ga----ilINv~RG~iVde~aL~~~L~~~~  150 (274)
                              .+. . +++.++.+|+|+.++-..+.+..++..+ ..+.||+|.    +++|++    +|..--++      
T Consensus       277 ~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs----~D~gG~ie------  346 (1042)
T PLN02819        277 ADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT----CDIGGSIE------  346 (1042)
T ss_pred             hhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc----cCCCCCee------
Confidence                    000 1 4568889999999998777788899887 778899998    899987    33333344      


Q ss_pred             heeehhhccccccc-ceeecCCCccc-------------CccceeeeeecccCCc
Q psy3240         151 VISISMVTNEKHLH-RVFTLGDSFHK-------------GHVSAFIFIHMIMGDT  191 (274)
Q Consensus       151 i~~~D~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~  191 (274)
                                  ++ +.||+++|||.             +++..++|+.++|+.-
T Consensus       347 ------------~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~l  389 (1042)
T PLN02819        347 ------------FLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEF  389 (1042)
T ss_pred             ------------ecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccC
Confidence                        45 89999999999             8899999999999973

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00012  Score=68.21  Aligned_cols=79  Identities=22%  Similarity=0.348  Sum_probs=63.7

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +-++.||++.|||-+ .+|+.+|..|...    ++.+.+...++.            ++.+.+++||+|+.+++-    .
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~------------~l~~~~~~ADIvV~AvG~----p  211 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSE------------NLTEILKTADIIIAAIGV----P  211 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence            568999999999986 6799999999877    676666554332            588899999999999964    2


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCC
Q psy3240         112 HLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG  134 (274)
                      +++..+++   |+|+++||+|--
T Consensus       212 ~~i~~~~i---k~GavVIDvGin  231 (287)
T PRK14181        212 LFIKEEMI---AEKAVIVDVGTS  231 (287)
T ss_pred             CccCHHHc---CCCCEEEEeccc
Confidence            56777765   899999999853

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00017  Score=69.84  Aligned_cols=116  Identities=13%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhc----CCcc-cCHHHH---hcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKR----GAEH-TNIDDL---CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~----g~~~-~sl~el---l~~aDvVil~lPlt~~T~  111 (274)
                      ...+|+||+|.||+.+|.+....|.++.+|++...+.+ . .+.    .+.. .+++|+   ++.---|++++-......
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            35699999999999999999999997777766555544 2 222    1222 377775   456678888887653334


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .+| ++.++.|.+|=++||-+-..--|...-.+.|++.|+.||.|-.
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GV  128 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGV  128 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccc
Confidence            555 4788999999999999998888999999999999999998544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.75  E-value=9.4e-05  Score=69.24  Aligned_cols=90  Identities=10%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhhc---CCc--ccCHHHHhcccCEEEEcCCCCccc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKR---GAE--HTNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~---g~~--~~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      ...++++|||.|.+|+..++.+.. ++.+.+..++|+....   +...   +..  ..+.+++++++|+|+.++|.+.  
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence            457899999999999999999864 6766666666654322   2222   222  2378899999999999999643  


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                       .++..    .+|||+.++.+|.-.+
T Consensus       201 -Pl~~~----~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        201 -PVYPE----AARAGRLVVAVGAFTP  221 (304)
T ss_pred             -ceeCc----cCCCCCEEEecCCCCC
Confidence             56653    3699999999996544

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.74  E-value=0.00017  Score=71.08  Aligned_cols=110  Identities=16%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-------------------HhhcCCcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-------------------ADKRGAEHTN   89 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-------------------a~~~g~~~~s   89 (274)
                      |.+|+|++|.|.|+|++|+..|+.|..+|++++++.+....        ..                   ....++...+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            57899999999999999999999999999988876552211        00                   0011333334


Q ss_pred             HHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCCC-CcEEE-EcCCCchhcHHHHHhhhhhhhhee
Q psy3240          90 IDDLC-KQSDFIIITSALTPDTHHLINRARLESMKP-GAILI-NTSRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus        90 l~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk~-gailI-Nv~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      .++++ ..|||++-|.     +.+.|+.+..++++. |..+| -.+-+ ++..++. +.|.++||.+
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~~  362 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKILY  362 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcEE
Confidence            45543 3588887654     457788888888864 45444 44555 6666654 4466666543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.71  E-value=0.00035  Score=65.97  Aligned_cols=88  Identities=20%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCCh-h--Hhh----cCCcc---cCHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKP-E--ADK----RGAEH---TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~-~--a~~----~g~~~---~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ..++++|||.|.+|+..++.+. ..+.+.+.+++|+... +  +..    .++..   .++++++++||+|+.++|... 
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~-  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET-  206 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence            4579999999999999999997 4776666556665433 2  221    24432   378899999999999998643 


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         110 THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG  134 (274)
                        .++..+.   +|+|+.+..++.-
T Consensus       207 --p~i~~~~---l~~g~~i~~vg~~  226 (326)
T TIGR02992       207 --PILHAEW---LEPGQHVTAMGSD  226 (326)
T ss_pred             --cEecHHH---cCCCcEEEeeCCC
Confidence              5666554   5899998888753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00014  Score=68.10  Aligned_cols=81  Identities=22%  Similarity=0.454  Sum_probs=63.9

Q ss_pred             CCCCCCCCEEEEEcc-ChHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCccc
Q psy3240          36 CGPALQNSTVGIVGC-GRIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .|.++.||++.|||- ..+|+.+|..|...    ++.+.+...++.            ++.+..++||+|+.++.-    
T Consensus       155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~------------~l~~~~~~ADIvVsAvGk----  218 (297)
T PRK14168        155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSK------------NLARHCQRADILIVAAGV----  218 (297)
T ss_pred             hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCc------------CHHHHHhhCCEEEEecCC----
Confidence            367899999999997 57899999999876    676666554432            588899999999998853    


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .+++..+.+   |+|+++||+|.-.
T Consensus       219 p~~i~~~~i---k~gavVIDvGin~  240 (297)
T PRK14168        219 PNLVKPEWI---KPGATVIDVGVNR  240 (297)
T ss_pred             cCccCHHHc---CCCCEEEecCCCc
Confidence            246777665   8999999998533

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.70  E-value=0.00014  Score=68.74  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=62.2

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hh---hcCCc---ccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--AD---KRGAE---HTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~---~~g~~---~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      -+++||||.|.+|+..++.+.. +..+.+.+++++... .  +.   +.+..   ..+.+|++++||+|++|+|.+   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            5789999999999998777653 344445444554432 2  11   23532   238999999999999999853   4


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         112 HLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .++..+.   +|||+.+..+|.-.+
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~~p  226 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGADAP  226 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCCCc
Confidence            5666554   499999999996543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00016  Score=67.59  Aligned_cols=78  Identities=19%  Similarity=0.329  Sum_probs=63.0

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.+.+...++.            ++.+..++||+|+.+++-    .
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------nl~~~~~~ADIvIsAvGk----p  215 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK------------NLKKECLEADIIIAALGQ----P  215 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence            568999999999985 6799999999865    676666655442            588899999999999974    2


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      +++..+++   |+|+++||+|-
T Consensus       216 ~~i~~~~v---k~gavVIDvGi  234 (293)
T PRK14185        216 EFVKADMV---KEGAVVIDVGT  234 (293)
T ss_pred             CccCHHHc---CCCCEEEEecC
Confidence            45776654   89999999985

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00016  Score=67.70  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=62.3

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.+.+..+++.            ++.+..++||+|+.++.-    .
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------~l~~~~~~ADIvIsAvGk----p  215 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTD------------DLAAKTRRADIVVAAAGV----P  215 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence            568999999999985 6799999999765    786666554432            578899999999998853    3


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      +++..+++   |+|+++||+|-
T Consensus       216 ~~i~~~~i---k~gaiVIDvGi  234 (297)
T PRK14167        216 ELIDGSML---SEGATVIDVGI  234 (297)
T ss_pred             CccCHHHc---CCCCEEEEccc
Confidence            46777665   89999999984

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.69  E-value=0.00014  Score=75.65  Aligned_cols=98  Identities=15%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~   96 (274)
                      ++|+|||.|.||..+|..+...|++|++++......+ .           .+.|             +... ++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            6899999999999999999999998888886544211 0           0111             1111 44 45789


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      ||+|+=++|-.-+.+.-+-++.-+.++|+++|- |+|.   ++..+|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~  438 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAK  438 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHh
Confidence            999999999988888777677777889998884 4554   34444444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.69  E-value=0.00018  Score=70.85  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=72.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh----Hh------------hcCCcccCHHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE----AD------------KRGAEHTNIDD   92 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~----a~------------~~g~~~~sl~e   92 (274)
                      +.+|+|++|+|.|+|++|+.+|+.|..+|+++++..+...        ...    ..            ..+++..+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            5689999999999999999999999999998877744211        000    00            00222334455


Q ss_pred             Hhc-ccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          93 LCK-QSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        93 ll~-~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ++. .|||++-|...     +.|+.+...+++  +-.+++-.+-+.+ ..+ ..+.|.++||.++
T Consensus       307 i~~~d~DVliPaAl~-----n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~~v  364 (445)
T PRK09414        307 PWSVPCDIALPCATQ-----NELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVLFA  364 (445)
T ss_pred             ccccCCcEEEecCCc-----CcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcEEE
Confidence            544 69999988754     456666555553  2346666777776 333 4466777777543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00015  Score=67.56  Aligned_cols=77  Identities=18%  Similarity=0.405  Sum_probs=63.6

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHcc----CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIP----YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~----~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +.++.||++.|||-+ .+|+.+|..|..    .++.+.....++            .++.+.+++||+|+.+++    ..
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~p  215 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----RP  215 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CC
Confidence            568999999999985 679999999987    788776666443            258899999999999995    34


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                      +++.++.+   |+|+++||+|
T Consensus       216 ~li~~~~v---k~GavVIDVG  233 (286)
T PRK14184        216 RFVTADMV---KPGAVVVDVG  233 (286)
T ss_pred             CcCCHHHc---CCCCEEEEee
Confidence            56887776   9999999998

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.68  E-value=0.00014  Score=75.31  Aligned_cols=90  Identities=20%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             CEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK   95 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~   95 (274)
                      ++|+|||.|.||..+|..+. ..|++|++||....... .           .+.+             +... ++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            68999999999999999887 58998888887643211 0           0011             1122 44 4678


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCC
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSR  133 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~R  133 (274)
                      .||+|+=++|-..+.+.-+-++.-+.++++++|. |+|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~  422 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS  422 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence            9999999999988888877677777789988874 4444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.66  E-value=0.00016  Score=75.19  Aligned_cols=98  Identities=16%  Similarity=0.222  Sum_probs=71.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~   96 (274)
                      ++|+|||.|.||..+|..+...|++|++||.+....+ .           .+.|             +... ++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            6899999999999999999999998888887654321 0           0111             1112 45 45789


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      ||+|+=++|-..+.+.-+-++.-+.++++++|. |+|.   +....|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~  438 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST---ISISLLAK  438 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHh
Confidence            999999999988888877777778889998884 4444   33444445

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.00021  Score=66.94  Aligned_cols=78  Identities=18%  Similarity=0.321  Sum_probs=62.7

Q ss_pred             CCCCCCCEEEEEccC-hHHHHHHHHHcc----CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          37 GPALQNSTVGIVGCG-RIGLSVLEKLIP----YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG-~IG~~iA~~L~~----~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +.++.||++.|||-+ .+|+.+|..|..    .++.+......+            .++.+.+++||+|+.+++..    
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~----  217 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA----  217 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence            568999999999985 679999999876    577655554332            25888999999999999532    


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      +++..+.+   |+|+++||+|-
T Consensus       218 ~li~~~~v---k~GavVIDVgi  236 (295)
T PRK14174        218 RFITADMV---KPGAVVIDVGI  236 (295)
T ss_pred             CccCHHHc---CCCCEEEEeec
Confidence            67888877   99999999984

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.65  E-value=0.00024  Score=65.91  Aligned_cols=113  Identities=15%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcC-----Ccc---cCHHHHhcccCEEEEcCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRG-----AEH---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g-----~~~---~sl~ell~~aDvVil~lPl  106 (274)
                      .++.+++|.|||.|.+|++++..|...|++.+...+|.... +  +...+     ...   .++.+.++++|+|+.++|.
T Consensus       123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~  202 (284)
T PRK12549        123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT  202 (284)
T ss_pred             cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence            46788999999999999999999999998555555555432 2  22211     111   1445677889999999987


Q ss_pred             Ccc-c-HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         107 TPD-T-HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       107 t~~-T-~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .-. . ...++.   +.++++.+++|+.-...  +..|++.-+++|+..+|
T Consensus       203 Gm~~~~~~~~~~---~~l~~~~~v~DivY~P~--~T~ll~~A~~~G~~~~~  248 (284)
T PRK12549        203 GMAKHPGLPLPA---ELLRPGLWVADIVYFPL--ETELLRAARALGCRTLD  248 (284)
T ss_pred             CCCCCCCCCCCH---HHcCCCcEEEEeeeCCC--CCHHHHHHHHCCCeEec
Confidence            421 1 112333   34678899999976552  35677777888887766

>PRK06046 alanine dehydrogenase; Validated

Probab=97.63  E-value=0.00041  Score=65.48  Aligned_cols=88  Identities=18%  Similarity=0.375  Sum_probs=63.2

Q ss_pred             CCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hhh----cCC--c-ccCHHHHhcccCEEEEcCCCCccc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---ADK----RGA--E-HTNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~~----~g~--~-~~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      -++|||||+|.+|+..++.+. ..+.+.+.++++.....   ...    .+.  . ..+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            478999999999999999886 35676666666654322   221    233  2 237889887 99999999964   


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ..++..+.   +|+|+.+..+|.-.+
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs~~p  227 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGADAP  227 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCCCCC
Confidence            36677665   489999999986443

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.62  E-value=0.00014  Score=75.73  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Ccc-cCHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEH-TNIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~-~sl~ell~~   96 (274)
                      ++|+|||.|.||..+|..+...|++|++++....... .           .+.|             +.. .++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            6899999999999999999989998888876543211 0           0111             111 244 35789


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      ||+|+=++|-..+.+.-+-.+.=+.++++++|. |+|+   ++...|.+
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~  460 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAA  460 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHh
Confidence            999999999988888877777778889998874 5665   44445555

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.61  E-value=0.00013  Score=57.57  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      +|+|++|.|||.|.+|..-++.|...|+++.++.+..  .. .+..++.  ..+++.+..+|+|+.+.+...     +++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~-~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~   75 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EF-SEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE   75 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HH-HHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hh-hhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence            6899999999999999999999999999888887765  11 1122222  255667888999998776422     344


Q ss_pred             HHHhcCCCCcEEEEcC
Q psy3240         117 ARLESMKPGAILINTS  132 (274)
Q Consensus       117 ~~l~~mk~gailINv~  132 (274)
                      ......+.-.+++|++
T Consensus        76 ~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   76 AIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHTTSEEEET
T ss_pred             HHHHHHhhCCEEEEEC
Confidence            4444455456788875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.61  E-value=0.0024  Score=59.55  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc--------------ccCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE--------------HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~--------------~~sl~ell~~aDvVil~lPlt  107 (274)
                      .++|+|||.|.||..+|.+|...|.++.++.+.. .......|..              ..+..+.+..+|+|+++++..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~   83 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT   83 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence            3689999999999999999999999777776543 2222222211              112223467899999999954


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhh
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDF  145 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~  145 (274)
                       ++...+ ....+.++++++++...-| +-.++.+.+.
T Consensus        84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~  118 (313)
T PRK06249         84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREI  118 (313)
T ss_pred             -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHH
Confidence             344443 2334446778888877554 3355566653

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.57  E-value=0.00081  Score=54.87  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ++|.+++.++...+++||.+|++|+++.|.||
T Consensus       102 ~~T~e~~~~~~~~~~~ni~~~l~g~~~~n~VN  133 (133)
T PF00389_consen  102 GYTDEARERMAEIAAENIERFLNGEPPENVVN  133 (133)
T ss_dssp             TGBHHHHHHHHHHHHHHHHHHHTTST-TTBSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            89999999999999999999999999999997

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.57  E-value=0.0002  Score=67.92  Aligned_cols=90  Identities=10%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---------CC------cc-cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---------GA------EH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---------g~------~~-~sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||.|.+|..+|..|...| .++.|.++..... ..+.         +.      .. .++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            67999999999999999999888 4777764332211 1110         11      12 267788999999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      . ..++.++. +..+.+++++.+|++.-|=
T Consensus        87 s-~~~~~vl~-~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 S-HGFRGVLT-ELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             H-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence            4 44555553 3445578888888887753

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.56  E-value=0.00033  Score=72.73  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK   95 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~   95 (274)
                      ++|+|||.|.||..+|..+. ..|+.|+.++.+..... .           .+.+             +... ++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78998888887543211 1           0011             1111 34 4678


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      .||+|+=++|-..+.+.-+-++.=+.++|+++|...+++  +....|.+
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~  435 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAA  435 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHH
Confidence            999999999998888887777777788999998644333  34444444

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.00038  Score=65.59  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hh----hcCCc---ccCHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---AD----KRGAE---HTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~----~~g~~---~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ..++++|||.|.+|+..++.+. ..+++.+..++|.....   +.    ..++.   ..+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4689999999999999988764 56777776666665432   11    22443   237899999999999999965  


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                       ..++.    +.+|+|+.++.+|.-.
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSFM  224 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCCC
Confidence             24554    4469999999998743

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.51  E-value=0.0012  Score=52.20  Aligned_cols=104  Identities=25%  Similarity=0.384  Sum_probs=66.8

Q ss_pred             EEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~  115 (274)
                      +|||||+|.+|+...+.++..  +.+++...++.....   +...++.. .+++++++  +.|+|++++|......  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            799999999999999888765  455555555544322   34566654 48999998  7999999999643322  22


Q ss_pred             HHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhh
Q psy3240         116 RARLESMKPGAILINTS-RGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       116 ~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i  151 (274)
                      ...++.=+  .+++.-- --.+-+.+.|.+..++.|.
T Consensus        80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence            34443322  5666631 2244566677776666554

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.48  E-value=0.00042  Score=61.20  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCC----------------hh--H-h----hcC--Cc--c--
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKK----------------PE--A-D----KRG--AE--H--   87 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~----------------~~--a-~----~~g--~~--~--   87 (274)
                      ..|+.++|+|+|+|.+|..+|+.|...|.. .+++|...-.                ..  + .    +..  +.  .  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            468999999999999999999999988984 5566544100                00  0 0    000  11  0  


Q ss_pred             -----cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          88 -----TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        88 -----~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                           .+++++++.+|+|+-+ ..+.+++.++.......+++..++...+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence                 1345678889999999 5678899998888888888777676443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.47  E-value=0.00044  Score=65.61  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ..+|||||+|+||+.+++.++.. +++.+++.++..... ....++.. .+.++++.+.|+|++|+|.....     ...
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~   77 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQ   77 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHH
Confidence            36899999999999999999765 787776655553222 22233322 36777888999999999974432     233


Q ss_pred             HhcCCCCcEEEEcCCC--chhcHHHHHhhhhh--hhheeeh
Q psy3240         119 LESMKPGAILINTSRG--QLVDQEALIDFIAD--IRVISIS  155 (274)
Q Consensus       119 l~~mk~gailINv~RG--~iVde~aL~~~L~~--~~i~~~D  155 (274)
                      .+.++.|.=+|+..--  .+.+..+.++..+.  .++.++-
T Consensus        78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~  118 (324)
T TIGR01921        78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS  118 (324)
T ss_pred             HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence            3445667677776431  22233444444444  2444433

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0007  Score=65.83  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC------------------Chh--HhhcCCcccCHHHHhc-
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK------------------KPE--ADKRGAEHTNIDDLCK-   95 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~------------------~~~--a~~~g~~~~sl~ell~-   95 (274)
                      |.+|+|+||.|=|+|+.|+.+|+.|...|+++++++++..                  +..  ....+.+..+-++++. 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~  281 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV  281 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence            4569999999999999999999999989999888887766                  111  2223445555566664 


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV  137 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV  137 (274)
                      .|||.+-|     ++.+.|+.+..++++.. +++-.+-+.+-
T Consensus       282 ~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t  317 (411)
T COG0334         282 DCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT  317 (411)
T ss_pred             cCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC
Confidence            68987654     45677888888888866 77777777765

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.42  E-value=0.00052  Score=55.10  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=53.8

Q ss_pred             EEEEEc-cChHHHHHHHHHccC-CCeEEEE-eCCCC-ChhHh-hcC-Cc-----ccCHHHH-hcccCEEEEcCCCCcccH
Q psy3240          44 TVGIVG-CGRIGLSVLEKLIPY-KVSKFLY-TSRSK-KPEAD-KRG-AE-----HTNIDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        44 tVGIIG-lG~IG~~iA~~L~~~-G~~vv~~-~~r~~-~~~a~-~~g-~~-----~~sl~el-l~~aDvVil~lPlt~~T~  111 (274)
                      +++|+| .|.+|+.+++.+... +++++.. .++.. ..... ..+ ..     ..+.+++ ..++|+|++|+|... +.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence            589999 599999999999874 6665554 32221 11111 111 11     1121222 258999999999753 33


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      ..+. .....+++|.++|+++.
T Consensus        80 ~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       80 EIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HHHH-HHHhhhcCCCEEEECCc
Confidence            3332 23455799999999984

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.41  E-value=0.00055  Score=64.02  Aligned_cols=91  Identities=18%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------c-CC------cc-cCHHHHh-cccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------R-GA------EH-TNIDDLC-KQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------~-g~------~~-~sl~ell-~~aDvVil~lP  105 (274)
                      ++|+|||.|.||..+|..|...|.++.++.++....+ ...       . +.      .. .++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            3699999999999999999999987776665432111 111       0 11      11 2566666 58999999999


Q ss_pred             CCcccHHhccHHHHh-cCCCCcEEEEcCCCc
Q psy3240         106 LTPDTHHLINRARLE-SMKPGAILINTSRGQ  135 (274)
Q Consensus       106 lt~~T~~li~~~~l~-~mk~gailINv~RG~  135 (274)
                      . ..++.++. +..+ .+++++.+|...-|-
T Consensus        81 s-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 T-QQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            5 34555543 2333 567777777666553

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.41  E-value=0.00071  Score=63.84  Aligned_cols=89  Identities=19%  Similarity=0.264  Sum_probs=64.2

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---H---hhcCCcc--c-CHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---A---DKRGAEH--T-NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a---~~~g~~~--~-sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      -++++|||.|..++..++.+.. +..+.+.+++|+....   +   .+.+...  + +.+++++.||+|+.+++.   +.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence            4799999999999999988763 4555565556555332   1   1223332  3 789999999999998874   44


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         112 HLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .+++.+.   +|||+.++.+|.-..
T Consensus       205 P~~~~~~---l~~G~hi~~iGs~~p  226 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGADSP  226 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCCCCc
Confidence            6777665   589999999986444

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.40  E-value=0.00042  Score=66.03  Aligned_cols=88  Identities=23%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---C----HHHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---N----IDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---s----l~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .|++|+|+|+|-.|....|.++++|+++++++.+..+.+ ++++|+...   +    .+++-+.+|+|+.++| ....  
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence            499999999999999999999999998888887777666 788887542   1    2233334999999998 4332  


Q ss_pred             hccHHHHhcCCCCcEEEEcCCC
Q psy3240         113 LINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG  134 (274)
                         ...++.++++..++-+|=.
T Consensus       243 ---~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECCC
Confidence               2456667888887777654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.40  E-value=0.00082  Score=62.25  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCC----ccc----CHHHHhcccCEEEEcCCCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGA----EHT----NIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~----~~~----sl~ell~~aDvVil~lPlt  107 (274)
                      +++++++.|||.|.+|++++..|...|++.+...+|+... +  +...+.    ...    ++.+.+.++|+|+.++|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            5789999999999999999999999998655555555432 2  222211    111    2335568899999999975


Q ss_pred             cccHHhccHHHH---------hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         108 PDTHHLINRARL---------ESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       108 ~~T~~li~~~~l---------~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ..    ++...+         ..++++.+++|+--..  .+..|.+.-+++|+..+|
T Consensus       202 ~~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~~~  252 (282)
T TIGR01809       202 VP----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP--WPTPLVAIVSAAGWRVIS  252 (282)
T ss_pred             CC----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC--CCCHHHHHHHHCCCEEEC
Confidence            32    222222         1235677888876433  235677777777877666

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.39  E-value=0.00055  Score=65.33  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             EEEEEccChHHHHHHHHHccCC--------CeEEEEeCCC---CChh---Hh--h------cCC------cc-cCHHHHh
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYK--------VSKFLYTSRS---KKPE---AD--K------RGA------EH-TNIDDLC   94 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G--------~~vv~~~~r~---~~~~---a~--~------~g~------~~-~sl~ell   94 (274)
                      +|+|||.|+.|.++|..|...|        .++..|.++.   ....   ..  .      .++      .. .++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998766        7777776421   1110   00  0      022      12 3788999


Q ss_pred             cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240          95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      +.||+|++++|. ...+.++ .+.-+.++++..+|+++-|=
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi  119 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL  119 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence            999999999995 3444444 34445678889999998773

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00066  Score=64.55  Aligned_cols=87  Identities=22%  Similarity=0.345  Sum_probs=64.9

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---H---hh-cCC--ccc-CHHHHhcccCEEEEcCCCCccc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---A---DK-RGA--EHT-NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a---~~-~g~--~~~-sl~ell~~aDvVil~lPlt~~T  110 (274)
                      -++++|||.|..+..-++.++. ++.+.+-.++|.+...   +   .+ .+.  ..+ +.+++++.||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            4689999999999999999975 6776665555554332   1   12 222  233 88999999999999999655  


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         111 HHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG  134 (274)
                       .++..+.+   +||+.+..+|..
T Consensus       208 -Pil~~~~l---~~G~hI~aiGad  227 (330)
T COG2423         208 -PVLKAEWL---KPGTHINAIGAD  227 (330)
T ss_pred             -CeecHhhc---CCCcEEEecCCC
Confidence             67777665   799999999863

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.35  E-value=0.00071  Score=65.14  Aligned_cols=93  Identities=13%  Similarity=0.230  Sum_probs=62.4

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC-------CeEEEEeCCCCC-----hh-Hhh--c------C------Ccc-cCHHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK-------VSKFLYTSRSKK-----PE-ADK--R------G------AEH-TNIDDL   93 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G-------~~vv~~~~r~~~-----~~-a~~--~------g------~~~-~sl~el   93 (274)
                      .++|+|||.|..|.++|..|...|       .++..|.++...     .+ ...  .      +      +.. .+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            468999999999999999998665       666676555421     11 100  0      1      112 278889


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHHh--cCCCCcEEEEcCCCch
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARLE--SMKPGAILINTSRGQL  136 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l~--~mk~gailINv~RG~i  136 (274)
                      ++.||+|++++|. ...+.++. +.-+  .+++++++|+++-|=-
T Consensus        91 v~~aDiIvlAVPs-q~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe  133 (365)
T PTZ00345         91 VEDADLLIFVIPH-QFLESVLS-QIKENNNLKKHARAISLTKGII  133 (365)
T ss_pred             HhcCCEEEEEcCh-HHHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence            9999999999995 34444442 2223  4667889999887643

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.34  E-value=0.00078  Score=63.89  Aligned_cols=94  Identities=13%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-----------H----hhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----------A----DKRGAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----------a----~~~g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|||.|.-|.++|+.|...|.++..|.++.....           .    ...++.. .++.++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            6899999999999999999999987777765422111           0    0011222 3799999999999999994


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                       ...+.++.. .-..+++++.+|+++-|=-.+
T Consensus        82 -~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          82 -QALREVLRQ-LKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             -HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence             445555432 225678999999998765443

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.34  E-value=0.0012  Score=60.55  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=58.4

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh--Hhhc--CCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKR--GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~--g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+.+++.+... +++...+..+.....  ....  ++.. .+++++-.+.|+|+.|.|.... ..+ -.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~-~~   79 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEH-VV   79 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHH-HH
Confidence            4899999999999999999765 455444433332222  1111  3333 3788875569999999985322 221 12


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcH---HHHHhhhhh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQ---EALIDFIAD  148 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde---~aL~~~L~~  148 (274)
                      ..   ++.|.-++-.+-+...|.   +.|.+..++
T Consensus        80 ~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~  111 (265)
T PRK13303         80 PI---LKAGIDCAVISVGALADEALRERLEQAAEA  111 (265)
T ss_pred             HH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHH
Confidence            33   344555554555544443   344554443

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.34  E-value=0.001  Score=65.64  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=72.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEE--------EeCCCCChhH-------------------hhc-CCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL--------YTSRSKKPEA-------------------DKR-GAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~--------~~~r~~~~~a-------------------~~~-g~~~~   88 (274)
                      |.+|+|+||.|=|+|++|+.+|+.|..+|+++++        |++.--....                   ... +++..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            5689999999999999999999999999998887        4422111111                   011 33333


Q ss_pred             CHHHHhc-ccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhhee
Q psy3240          89 NIDDLCK-QSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus        89 sl~ell~-~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      +.++++. .|||++-|.     +.+.|+.+..+++.  +-.+++-.+-+ ++..+|- +.|+++||-+
T Consensus       303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~~  363 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQLF  363 (445)
T ss_pred             CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCEE
Confidence            4445543 588887765     55778877777762  23466666666 5655543 5567766654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.30  E-value=0.00061  Score=60.23  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC-Cccc--CH-HHHhcccCEEEEcCCCCcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG-AEHT--NI-DDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g-~~~~--sl-~ell~~aDvVil~lPlt~~  109 (274)
                      -+|+|++|.|||.|.+|...++.|...|++++++.+......  ....+ +...  .+ ++.+..+|+|+.++...+.
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el   83 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV   83 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence            479999999999999999999999999997777765432221  11112 2221  22 3457889999988775433

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.30  E-value=0.001  Score=62.37  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhh----cCCc--cc-CHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADK----RGAE--HT-NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~----~g~~--~~-sl~ell~~aDvVil~lPlt~~  109 (274)
                      .-+++||||.|..|+.-++.+.. +..+.+..++|+....   +..    .++.  .+ ++++++++||+|+.++|.+  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            35899999999999998888764 5666666666655332   111    2432  23 8999999999999988853  


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                       ..++..+.+   |||+.+.-+|.-.+
T Consensus       194 -~P~~~~~~l---~pg~hV~aiGs~~p  216 (301)
T PRK06407        194 -TPIFNRKYL---GDEYHVNLAGSNYP  216 (301)
T ss_pred             -CcEecHHHc---CCCceEEecCCCCC
Confidence             467776654   78988877776443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.30  E-value=0.00098  Score=62.98  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hh----hcCCc---ccCHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--AD----KRGAE---HTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~----~~g~~---~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ..++++|||.|.+|+..+..+.. .+.+.+..++|+... +  +.    ..++.   ..++++++++||+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            35799999999999999888874 566555555555432 2  12    12443   237899999999999998864  


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         110 THHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~R  133 (274)
                       ..++..+.   +++|+.+..++.
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg~  228 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMGS  228 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeCC
Confidence             35666554   578887777664

>PLN02477 glutamate dehydrogenase

Probab=97.30  E-value=0.0013  Score=64.33  Aligned_cols=115  Identities=15%  Similarity=0.230  Sum_probs=76.5

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H-h---hc-------CCcccCHHHHh-
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A-D---KR-------GAEHTNIDDLC-   94 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a-~---~~-------g~~~~sl~ell-   94 (274)
                      .|.+|+|++|+|.|+|++|+.+|+.|...|++++.+.+....        .. . .   +.       +.+..+.++++ 
T Consensus       200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~  279 (410)
T PLN02477        200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV  279 (410)
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence            367899999999999999999999999999987756554310        11 1 0   00       11223444443 


Q ss_pred             cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      ..|||++-|.     ..+.|+++..++++ -.+++-.+-+.+ ..+ ..+.|+++||.++ |.+.
T Consensus       280 ~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~~~PD~~a  336 (410)
T PLN02477        280 EPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVVVLPDIYA  336 (410)
T ss_pred             ccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcEEEChHHh
Confidence            4789888765     34568888888775 457777777776 333 3467788777654 3443

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.29  E-value=0.00058  Score=70.49  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=61.4

Q ss_pred             EEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccc
Q psy3240         100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVS  179 (274)
Q Consensus       100 Vil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~  179 (274)
                      |++|+|. ..+..++ ++..+.+++++++.|+++.+.--.+++.+.                            +.++..
T Consensus         1 vila~Pv-~~~~~~~-~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~----------------------------l~~~~~   50 (673)
T PRK11861          1 VLLAAPV-AQTGPLL-ARIAPFLDASTIVTDAGSTKSDVVAAARAA----------------------------LGARIG   50 (673)
T ss_pred             CEEEcCH-HHHHHHH-HHHhhhCCCCcEEEecCcccHHHHHHHHHh----------------------------ccccCC
Confidence            5788885 3445555 355577899999999999775443444441                            222334


Q ss_pred             eeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         180 AFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                      .|+++||++|.|             ++|...             ++..||+..++++||.-..
T Consensus        51 ~fvg~HPMaG~e-------------~~G~~~-------------a~~~Lf~~~~~il~p~~~~   87 (673)
T PRK11861         51 QFVPGHPIAGRE-------------SSGVDA-------------ALADLYVGRNVVLCALPEN   87 (673)
T ss_pred             eEEecCCcCcCc-------------chhhhh-------------hChhHhCCCeEEEecCCCC
Confidence            799999999999             566544             4578999999999996543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.29  E-value=0.00048  Score=64.75  Aligned_cols=91  Identities=20%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--H---hhcCCcc--c-CHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--A---DKRGAEH--T-NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a---~~~g~~~--~-sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      -++++|||.|..|+.-++.+.. +..+.+.+++|.... +  +   ...+...  + +.++++++||+|+.++|.+..+ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence            3589999999999999998864 667666666665432 2  1   1224432  2 8999999999999999876543 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         112 HLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .+++.+   .++||+.++.+|....
T Consensus       207 P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  207 PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             ccccHH---HcCCCcEEEEecCCCC
Confidence            667654   4689999999998655

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.26  E-value=0.00066  Score=60.18  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCccc--C-HHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAEHT--N-IDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~~~--s-l~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +|+|++|.|||.|.+|..-++.|..+|++++++++......  ..+. .+...  + -.+.+..+|+|+.+....+-   
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l---   82 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL---   82 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH---
Confidence            69999999999999999999999999998888776554221  1122 23321  1 13456789998887654322   


Q ss_pred             hccHHHHhcCCCCcEEEEcC
Q psy3240         113 LINRARLESMKPGAILINTS  132 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~  132 (274)
                        |.......++-.++||+.
T Consensus        83 --n~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        83 --NRRVAHAARARGVPVNVV  100 (205)
T ss_pred             --HHHHHHHHHHcCCEEEEC
Confidence              334444444455677753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.23  E-value=0.0016  Score=64.31  Aligned_cols=111  Identities=18%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh-H--------------h-----hcCCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE-A--------------D-----KRGAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~-a--------------~-----~~g~~~~   88 (274)
                      +.+|+|+||.|=|+|++|+.+|+.|..+|++++.+.+...        ... .              .     ..++++.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            5789999999999999999999999999998875655441        000 0              0     0023333


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhhee
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESM-KPGAILINTSRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      +.++++ ..||+.+-|.     +.+.|+.+..+.+ +.++.+|--+--.+...+ -.+.|+++||.+
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~~  372 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVIF  372 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcEE
Confidence            333433 3688887764     5567877766655 445555544433334443 345566666653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.22  E-value=0.002  Score=58.31  Aligned_cols=95  Identities=26%  Similarity=0.379  Sum_probs=62.0

Q ss_pred             CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCC-Chh--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSK-KPE--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~-~~~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+.+.+.++.  ..++.+.++++.. +..  ....+... .+++|++++.|+|+=|... ++.+.+   
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~---   76 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREY---   76 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHH---
Confidence            479999999999999999984  2454444444443 332  22233322 4799999999999987742 233322   


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHH
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEAL  142 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL  142 (274)
                       ..+.|+.|.=+|=+|-|.+.|+.-+
T Consensus        77 -~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          77 -VPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             -hHHHHhcCCCEEEEechhccChHHH
Confidence             3344566777777788888866533

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.22  E-value=0.0012  Score=61.39  Aligned_cols=115  Identities=12%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC----hh--HhhcC------CcccCH------HHHhcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK----PE--ADKRG------AEHTNI------DDLCKQSD   98 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~----~~--a~~~g------~~~~sl------~ell~~aD   98 (274)
                      +.++.++++.|+|.|-.+++++..|...|++.+...+|+..    .+  +...+      +...++      .+.+.++|
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD  198 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence            45688999999999999999999998889866655555532    11  22221      112233      23566799


Q ss_pred             EEEEcCCCCcc--cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240          99 FIIITSALTPD--THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus        99 vVil~lPlt~~--T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|+.++|..-.  ... ++..  .+.++++.++.|+--...  +..|++.-+++|+..+|
T Consensus       199 ivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~  254 (288)
T PRK12749        199 ILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH--MTKLLQQAQQAGCKTID  254 (288)
T ss_pred             EEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc--cCHHHHHHHHCCCeEEC
Confidence            99999997421  111 1111  234678899999875442  56778878888888777

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.20  E-value=0.0021  Score=59.42  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccC---CCeEEEEeCCCC-ChhHhhcCCccc-CHHHH-hcccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY---KVSKFLYTSRSK-KPEADKRGAEHT-NIDDL-CKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~---G~~vv~~~~r~~-~~~a~~~g~~~~-sl~el-l~~aDvVil~lPlt~~T~~li~  115 (274)
                      ..+|||||+|.||+.+++.+..-   +++.+.+.++.. +..........+ +++++ ....|+|+=|.... .    +-
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-a----v~   76 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-A----IA   76 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-H----HH
Confidence            36899999999999999998643   354444444443 222222224444 79997 57899999988632 2    21


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      +--.+-|+.|.-++=+|-|.+.|.+
T Consensus        77 e~~~~iL~~g~dlvv~SvGALaD~~  101 (267)
T PRK13301         77 EHAEGCLTAGLDMIICSAGALADDA  101 (267)
T ss_pred             HHHHHHHhcCCCEEEEChhHhcCHH
Confidence            2222334667788888889988754

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.18  E-value=0.00091  Score=60.98  Aligned_cols=114  Identities=24%  Similarity=0.365  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-------C-Chh-----HhhcCC-------------cccCHH-
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-------K-KPE-----ADKRGA-------------EHTNID-   91 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-------~-~~~-----a~~~g~-------------~~~sl~-   91 (274)
                      +++|+++.|-|+|++|+.+|+.|...|++++...+..       . ...     ..+.+.             +..+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            6999999999999999999999999999776653322       1 111     111222             112232 


Q ss_pred             HHh-cccCEEEEcCCCCcccHHhccHHHHh-cCCCCc-EEEEcCCCchhcHHHHHhhhhhhhheee-hhhcc
Q psy3240          92 DLC-KQSDFIIITSALTPDTHHLINRARLE-SMKPGA-ILINTSRGQLVDQEALIDFIADIRVISI-SMVTN  159 (274)
Q Consensus        92 ell-~~aDvVil~lPlt~~T~~li~~~~l~-~mk~ga-ilINv~RG~iVde~aL~~~L~~~~i~~~-D~~~~  159 (274)
                      +++ ..||+++.|.-     .+.|+.+... .+++++ +++-.+-+.+- .++.. .|+++||.++ |.+.|
T Consensus       109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~viPD~~aN  173 (244)
T PF00208_consen  109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGILVIPDFLAN  173 (244)
T ss_dssp             HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-EEE-HHHHT
T ss_pred             ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCEEEcchhhc
Confidence            555 57999999843     3557777777 666554 45555566654 44443 7888887443 55543

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.15  E-value=0.0012  Score=63.85  Aligned_cols=91  Identities=22%  Similarity=0.393  Sum_probs=64.8

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-C-CCeEEEEeCCCCChh---Hh----hc-CC---ccc-CHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-Y-KVSKFLYTSRSKKPE---AD----KR-GA---EHT-NIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~-G~~vv~~~~r~~~~~---a~----~~-g~---~~~-sl~ell~~aDvVil~lPlt  107 (274)
                      -++++|||.|..++.-++.+.. + ..+.+.+++|.....   +.    .. ++   ..+ +.+++++.||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4789999999999999998876 4 366666666665332   11    11 22   223 7999999999999999864


Q ss_pred             c---ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 P---DTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 ~---~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .   .+..++..+.+   |||+.++.++.-+
T Consensus       235 ~~~~s~~Pv~~~~~l---kpG~hv~~ig~~e  262 (379)
T PRK06199        235 TGDPSTYPYVKREWV---KPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCcCcEecHHHc---CCCcEEecCCccc
Confidence            4   34567776654   7999888777644

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.12  E-value=0.0016  Score=52.69  Aligned_cols=101  Identities=14%  Similarity=0.297  Sum_probs=66.8

Q ss_pred             CEEEEEc----cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVG----CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIG----lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      |+|+|||    -+..|..+.+.|+..|.+++.++++...-    .|.. +.+++|.-...|++++++|. +.+..+++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~--   73 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD--   73 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH--
Confidence            6899999    78999999999999998777776655322    2443 34888855789999999994 34445553  


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      .+..+..+.+++..+    ..++++.+.+++.|+.++
T Consensus        74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi  106 (116)
T PF13380_consen   74 EAAALGVKAVWLQPG----AESEELIEAAREAGIRVI  106 (116)
T ss_dssp             HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred             HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence            233346678888888    677888888888888766

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0022  Score=59.82  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcC---C--cccCHHHH--hcccCEEEEcCCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRG---A--EHTNIDDL--CKQSDFIIITSALT  107 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g---~--~~~sl~el--l~~aDvVil~lPlt  107 (274)
                      .+..|+++.|+|.|-.+++++..|+..|++.+.+.+|+....   +...+   .  ....+.++  ..++|+|+.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            466799999999999999999999999976666666655332   22222   1  11222222  22699999999985


Q ss_pred             cccH---HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         108 PDTH---HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       108 ~~T~---~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      -.-.   ..++   .+.++++.++.|+--...  +..|++.-+++|+..+|
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~--~TplL~~A~~~G~~~id  247 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL--ETPLLREARAQGAKTID  247 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCC--CCHHHHHHHHcCCeEEC
Confidence            4332   1333   455789999999865553  55677777777877776

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.10  E-value=0.0013  Score=53.02  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             EEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCC-Ch-h-Hhhc----CCcc---cC-HHHHhcccCEEEEcCCCCccc
Q psy3240          44 TVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSK-KP-E-ADKR----GAEH---TN-IDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        44 tVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~-~~-~-a~~~----g~~~---~s-l~ell~~aDvVil~lPlt~~T  110 (274)
                      ||+||| .|.+|+.+.+.|.. ..++.+....+.. .. . ....    +...   .+ ..+.+..+|+|++|+|.... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            699999 99999999999975 3454443333333 11 1 1111    1211   11 23455999999999995322 


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCC
Q psy3240         111 HHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..+. ...   +++|..+||.|.
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSS
T ss_pred             HHHH-HHH---hhCCcEEEeCCH
Confidence            2222 222   478999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.05  E-value=0.0024  Score=59.32  Aligned_cols=114  Identities=9%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCC---CChh--Hhhc---C----CcccC------HHHHhcccC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS---KKPE--ADKR---G----AEHTN------IDDLCKQSD   98 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~---~~~~--a~~~---g----~~~~s------l~ell~~aD   98 (274)
                      .++.++++.|+|.|.+|+++|..|...|++ +++++++.   .+.+  +.+.   +    +...+      +++.++.+|
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            357899999999999999999999999997 44554433   1211  1111   1    11112      334567789


Q ss_pred             EEEEcCCCCc--ccHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240          99 FIIITSALTP--DTHH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus        99 vVil~lPlt~--~T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|+.++|..-  .... .+.  ....++++.+++|+--...  +..|.+.-+++|+..+|
T Consensus       202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~  257 (289)
T PRK12548        202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNPK--KTKLLEDAEAAGCKTVG  257 (289)
T ss_pred             EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCCC--CCHHHHHHHHCCCeeeC
Confidence            9999999742  1111 120  1234678889999876442  36677777777887666

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.05  E-value=0.00075  Score=55.67  Aligned_cols=96  Identities=17%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--------------C-HHHHhcccCEEEEcCCCCc
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--------------N-IDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--------------s-l~ell~~aDvVil~lPlt~  108 (274)
                      |+|+|.|.||.-+|.+|+..|.++..+.++. ..+ ..+.|....              + ..+....+|+|++++.. .
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence            6899999999999999999999877777665 222 233333211              1 12467789999999974 3


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +++..+.. ....+.+++.++-.--| +-.++.+.+
T Consensus        79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~  112 (151)
T PF02558_consen   79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAE  112 (151)
T ss_dssp             GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHC
T ss_pred             chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHH
Confidence            45555543 55556677677766544 344556655

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.01  E-value=0.0026  Score=60.62  Aligned_cols=91  Identities=20%  Similarity=0.292  Sum_probs=56.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccC-CCeEE-EEeCCCCChh--Hhhc----C---Ccc--cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPY-KVSKF-LYTSRSKKPE--ADKR----G---AEH--TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~-G~~vv-~~~~r~~~~~--a~~~----g---~~~--~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+|+|. |.+|+.+++.|... +.+++ +++++.....  ....    +   ...  .+.++++.++|+|++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999876 55555 3344432111  1111    1   112  25566667899999999953 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      ..+.+.. +.   .+.|..+||.|..--.+
T Consensus        80 ~s~~~~~-~~---~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        80 VSAELAP-EL---LAAGVKVIDLSADFRLK  105 (346)
T ss_pred             HHHHHHH-HH---HhCCCEEEeCChhhhcC
Confidence            2222221 11   25789999998433333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.98  E-value=0.0039  Score=58.73  Aligned_cols=93  Identities=23%  Similarity=0.359  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh--Hh--h-----cCC----cc-cCHHHHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--AD--K-----RGA----EH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~--~-----~g~----~~-~sl~ell~~aDvVil~l  104 (274)
                      ++.++|+|||.|.||..+|..+...| .+++.+|.+.....  +.  .     .+.    .. .+++ .++.||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            46789999999999999999988777 56677776554322  11  0     111    11 2455 779999999999


Q ss_pred             --CCCc-ccH--------Hhcc--HHHHhcCCCCcEEEEcCC
Q psy3240         105 --ALTP-DTH--------HLIN--RARLESMKPGAILINTSR  133 (274)
Q Consensus       105 --Plt~-~T~--------~li~--~~~l~~mk~gailINv~R  133 (274)
                        |..+ .++        .++.  .+.+....|.+++|+++-
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              4333 111        1111  123444568889999863

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.95  E-value=0.0031  Score=60.37  Aligned_cols=91  Identities=11%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hh---hcCCc--c-cCHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---AD---KRGAE--H-TNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~---~~g~~--~-~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      -++++|||.|..++.-++.+. -+..+.+.+++|+....   ..   +.++.  . .++++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            478999999999998888665 35666666666655432   11   12332  2 38999999999999999743 222


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         112 HLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .++..+.   +|||+.+.-+|.-.+
T Consensus       208 Pvl~~~~---lkpG~hV~aIGs~~p  229 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVGGDCP  229 (346)
T ss_pred             ceecHHH---cCCCcEEEecCCCCC
Confidence            5566654   499999888886443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.94  E-value=0.0033  Score=63.34  Aligned_cols=114  Identities=13%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHH---Hh-cccCEEEEcCCCCcc-
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDD---LC-KQSDFIIITSALTPD-  109 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~e---ll-~~aDvVil~lPlt~~-  109 (274)
                      +.++.+|++.|+|.|.+|++++..|...|++++++++...+.+  +...+....++++   .. ..+|+|+.++|..-. 
T Consensus       374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~  453 (529)
T PLN02520        374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQP  453 (529)
T ss_pred             ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCC
Confidence            3468899999999999999999999999996555543322222  2223322223332   22 357899998886421 


Q ss_pred             -cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         110 -THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       110 -T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       ... .++.   ..+++..+++|+.-...  +..|++.-+++|+..+|
T Consensus       454 ~~~~~pl~~---~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~  496 (529)
T PLN02520        454 NVDETPISK---HALKHYSLVFDAVYTPK--ITRLLREAEESGAIIVS  496 (529)
T ss_pred             CCCCCcccH---hhCCCCCEEEEeccCCC--cCHHHHHHHHCCCeEeC
Confidence             111 1332   34677889999865442  35677777777776665

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.93  E-value=0.0054  Score=49.89  Aligned_cols=99  Identities=21%  Similarity=0.299  Sum_probs=55.5

Q ss_pred             EEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh-----Hh-----hcCCcc-cCHHHHhcccCEEEEcCCCCccc
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE-----AD-----KRGAEH-TNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~-----a~-----~~g~~~-~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      +|+|+|+ |+||+.+++.+.. -+++.+....+...+.     ..     ..++.. .++++++.++|+|+-.. ..+.+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence            7999999 9999999999987 6776655544443111     11     223333 38999999999998866 22222


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      ...+ +..+   +.|.-+|-..+|---.+.+.++.+.
T Consensus        81 ~~~~-~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   81 YDNL-EYAL---KHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             HHHH-HHHH---HHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             HHHH-HHHH---hCCCCEEEECCCCCHHHHHHHHHHh
Confidence            2222 1222   3355555555555444444445443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.92  E-value=0.0075  Score=59.27  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh------hHhhcCCccc---CHHHHhcccCEEEEcCCCCcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP------EADKRGAEHT---NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~------~a~~~g~~~~---sl~ell~~aDvVil~lPlt~~  109 (274)
                      .+.+++|+|+|+|..|.++|+.|+..|+++.++|......      .....|+...   ...+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            4678999999999999999999999999877777543211      1234466442   234556889999887 54444


Q ss_pred             cHHhccH------------HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 THHLINR------------ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~~li~~------------~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      +...+.+            +.+.+. +...+-|--+.|+.--.+-+...|+..+.
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            3333211            122222 22344455556887777777777776554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.016  Score=56.42  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=72.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc----------------C-----Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR----------------G-----AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~----------------g-----~~~-~sl~ell~~aDvV  100 (274)
                      ++|.|+|.|-+|...|..|..+|.+++.+|....+-+....                +     ..+ .+.++.++.+|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            58999999999999999999999988888765443221111                1     112 2678889999999


Q ss_pred             EEcCCCCcccHHhcc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHhh
Q psy3240         101 IITSALTPDTHHLIN--------RARLESMKPGAILINTSRGQLVDQEALIDF  145 (274)
Q Consensus       101 il~lPlt~~T~~li~--------~~~l~~mk~gailINv~RG~iVde~aL~~~  145 (274)
                      ++++|..+...+-+|        ++..+.++..+++|+=|+..+=-.+.+.+.
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~  133 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAK  133 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHH
Confidence            999996544333222        345666777799999998776555555553

>KOG2653|consensus

Probab=96.91  E-value=0.0036  Score=60.13  Aligned_cols=115  Identities=16%  Similarity=0.324  Sum_probs=89.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh-cCCc---ccCHHHHh---cccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK-RGAE---HTNIDDLC---KQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~-~g~~---~~sl~ell---~~aDvVil~lPlt~~T~~  112 (274)
                      ..+|+||++.||+.++.+....|+.+.+|++...+..   +.+ .|..   ..|++|++   ++--+|++.+-.......
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            5689999999999999999999997777766655543   222 2222   23888864   556788888877666666


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      +| ++..+.|.+|-++||-+-..--|...=.+.|+.+|+-|+.+-.
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GV  131 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGV  131 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCc
Confidence            66 4677889999999999999989999999999999999998543

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.89  E-value=0.0065  Score=55.48  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=45.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh--HhhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE--ADKRGAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~--a~~~g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      .+|+|+|+ |.||+.+++.+.. -+++++...++.....  ....++.. .+++++++.+|+|+.++|.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p   70 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP   70 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence            48999998 9999999999875 4677666554443221  22233433 4899999889999977753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.85  E-value=0.0059  Score=57.26  Aligned_cols=101  Identities=17%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhHhhc-----------C--Ccc-cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEADKR-----------G--AEH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~~~-----------g--~~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||..+|..+...|. +++.+|...........           .  +.. .++++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999887664 67788764443221110           1  112 26666 78999999999842


Q ss_pred             cc---c--------HHhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         108 PD---T--------HHLINR--ARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       108 ~~---T--------~~li~~--~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ..   +        ..++..  +.+....+++++|+++--.=+-...+.+
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~  130 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQ  130 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence            21   2        122211  2233445788999987533333334444

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.85  E-value=0.0077  Score=59.55  Aligned_cols=131  Identities=17%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-----HhhcCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----ADKRGAEHT---NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .+.+++|.|+|+|.-|.++|+.|+..|++++++|.+.....     ....++...   ...+....+|+|+.. |.-+-+
T Consensus         4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~   82 (448)
T COG0771           4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPT   82 (448)
T ss_pred             cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCC
Confidence            34599999999999999999999999998888886665521     112344332   122677889999885 332333


Q ss_pred             HHhccH------------HHHhcC-CCCcEEEEcC-CCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccC
Q psy3240         111 HHLINR------------ARLESM-KPGAILINTS-RGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKG  176 (274)
Q Consensus       111 ~~li~~------------~~l~~m-k~gailINv~-RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~  176 (274)
                      ..++.+            +.+-+. .+..++-=+| -|+.-...-+...|++.|..                        
T Consensus        83 ~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~------------------------  138 (448)
T COG0771          83 HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLD------------------------  138 (448)
T ss_pred             CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCC------------------------
Confidence            233321            223332 2333444444 48877777777767764443                        


Q ss_pred             ccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCC
Q psy3240         177 HVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPE  220 (274)
Q Consensus       177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~e  220 (274)
                                                +.-.|.|...++|+..++
T Consensus       139 --------------------------~~lgGNIG~p~l~~~~~~  156 (448)
T COG0771         139 --------------------------ALLGGNIGTPALELLEQA  156 (448)
T ss_pred             --------------------------ceeccccCccHHHhhccc
Confidence                                      777899999999998874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.80  E-value=0.0045  Score=61.49  Aligned_cols=116  Identities=16%  Similarity=0.281  Sum_probs=71.6

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T  110 (274)
                      |.-..+.|++|.|+|+|.+|.+.++.|+..|++++++|.+..... ..+.|+...   ...+.++.+|+|+..-...+..
T Consensus         5 ~~~~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~   84 (488)
T PRK03369          5 MLDPLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTA   84 (488)
T ss_pred             ccccccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCC
Confidence            333456899999999999999999999999998877775433222 344566442   2345677899888865433332


Q ss_pred             HHh----------ccHHHHh-cC-------CC-CcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         111 HHL----------INRARLE-SM-------KP-GAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       111 ~~l----------i~~~~l~-~m-------k~-gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      .-+          +++-.+. .+       ++ ..+-|--+-|+.-...-+...|+..|
T Consensus        85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g  143 (488)
T PRK03369         85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG  143 (488)
T ss_pred             HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            212          2211121 11       12 23334445688777777777777654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.78  E-value=0.0088  Score=46.99  Aligned_cols=83  Identities=20%  Similarity=0.318  Sum_probs=54.1

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccHHhc
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~~li  114 (274)
                      |.|+|+|.+|+.+++.|+..+.++++.+.+..... +.+.++...     +.   .+ -++++|.|+++.+....+  +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence            57999999999999999997767888887655444 455565421     22   22 257899999999864433  33


Q ss_pred             cHHHHhcCCCCcEEE
Q psy3240         115 NRARLESMKPGAILI  129 (274)
Q Consensus       115 ~~~~l~~mk~gailI  129 (274)
                      -...++.+.+...++
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            334555555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.78  E-value=0.0067  Score=56.41  Aligned_cols=113  Identities=15%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc----CC---cccC---HHHHhcccCEEEEcC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR----GA---EHTN---IDDLCKQSDFIIITS  104 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~----g~---~~~s---l~ell~~aDvVil~l  104 (274)
                      .++.++++.|+|.|-.|++++-.|...|++.+...+|+... +  +...    +.   ...+   +++.+..+|+|+.++
T Consensus       123 ~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaT  202 (283)
T PRK14027        123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_pred             cCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcC
Confidence            35778999999999999999999999998766555655432 2  2211    11   1122   234667899999999


Q ss_pred             CCCccc--HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         105 ALTPDT--HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       105 Plt~~T--~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      |..-..  ...++.   +.++++.++.|+--..  .+..+.+.-+++|+..+|
T Consensus       203 p~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~~~  250 (283)
T PRK14027        203 PMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP--IETELLKAARALGCETLD  250 (283)
T ss_pred             CCCCCCCCCCCCCH---HHcCCCcEEEEcccCC--CCCHHHHHHHHCCCEEEc
Confidence            975321  111332   3456788999886544  345677777777877666

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.77  E-value=0.0039  Score=54.91  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r   74 (274)
                      ..|++++|.|+|+|.+|..+|+.|...|.. .+++|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            469999999999999999999999999984 4555544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0048  Score=59.92  Aligned_cols=102  Identities=19%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcC---Ccc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRG---AEH--------TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g---~~~--------~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|.|||+|.||+.+|..|...| .++.+.++...+.. .....   ++.        ..+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999998888 65555554434333 22221   211        1567899999999999995422


Q ss_pred             cHHhccHHHH-hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 THHLINRARL-ESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~~li~~~~l-~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                            ...+ +.++-|.-.+|++=.+.- ..++-+.-++.|+
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Agi  117 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAGI  117 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcCe
Confidence                  2333 334667778888754332 1334343334443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.72  E-value=0.008  Score=56.12  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhhc-------CC--cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADKR-------GA--EH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~~-------g~--~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+|||.|.+|+.+|..|...|.  ++++++....+..  +.+.       +.  .. ....+.++.||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            489999999999999999988884  4667776554433  1111       11  11 122345789999999987531


Q ss_pred             c---cHH-h-------cc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         109 D---THH-L-------IN--RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       109 ~---T~~-l-------i~--~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      .   +|. +       +.  .+.+.+..|.+++|+++  .++|.-
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~  123 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVI  123 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHH
Confidence            1   221 1       11  12344456789999997  455433

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.70  E-value=0.0027  Score=58.95  Aligned_cols=100  Identities=23%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             CCCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-------HhhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          36 CGPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-------ADKRGAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-------a~~~g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      .|.+|+..+|+|+|+ |.||..+|+.|.+.+++....-+......       ....+... .|++..+.+.|+++-....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            589999999999996 99999999999998885554442221111       12233333 3677666666665554432


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~  140 (274)
                        .+-..|+.+.   +|||+.++|-++-.=+|+.
T Consensus       241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             --CCCceechhh---ccCCeEEEcCCcCcccccc
Confidence              2224466554   5999999999998766654

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.66  E-value=0.0041  Score=49.26  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHccCCCeEEEEeCCCCChhHhh----cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240          52 RIGLSVLEKLIPYKVSKFLYTSRSKKPEADK----RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA  126 (274)
Q Consensus        52 ~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~----~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga  126 (274)
                      .-+..+++.|+..|+++.+||+.-.......    .++... ++++.++.+|+|+++++- ++-+.+--.+....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence            3467899999999998888887665444333    356655 799999999999999984 3443333345667788999


Q ss_pred             EEEEc
Q psy3240         127 ILINT  131 (274)
Q Consensus       127 ilINv  131 (274)
                      ++||+
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK11579 putative oxidoreductase; Provisional

Probab=96.66  E-value=0.022  Score=53.72  Aligned_cols=105  Identities=14%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             CEEEEEccChHHHH-HHHHHcc-CCCeEEEEeCCCCChhHhhc-CCc-ccCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIP-YKVSKFLYTSRSKKPEADKR-GAE-HTNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~-~G~~vv~~~~r~~~~~a~~~-g~~-~~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+. .+..++. -+++++.+.++......... +.. +.+++++++  +.|+|++++|....-.  +-.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~--~~~   82 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFP--LAK   82 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHH--HHH
Confidence            48999999999985 5666654 36776666655433222222 232 348999996  5799999999643322  222


Q ss_pred             HHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         117 ARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       117 ~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      ..++   .| .+++.=- --.+-+.++|++..++.|+.
T Consensus        83 ~al~---aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~  117 (346)
T PRK11579         83 AALE---AGKHVVVDKPFTVTLSQARELDALAKSAGRV  117 (346)
T ss_pred             HHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            3333   23 2444411 12233445666655555543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.64  E-value=0.014  Score=54.40  Aligned_cols=109  Identities=14%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCccc---HH----
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDT---HH----  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T---~~----  112 (274)
                      .|++++|||--.=-..++++|.+.|++++++.-...  .....|+... +.+++++++|+|++-+|.+.+.   +.    
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~   78 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN   78 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence            478999999998899999999999998766432111  1123466665 6788899999999998875332   11    


Q ss_pred             ---hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         113 ---LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       113 ---li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                         -++.+.++.|+++.+++ +|.+..-    +-+.++++|+..+|.
T Consensus        79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~  120 (296)
T PRK08306         79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVEL  120 (296)
T ss_pred             cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEE
Confidence               13578899999998544 4544332    224455778877663

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.63  E-value=0.0054  Score=57.78  Aligned_cols=102  Identities=11%  Similarity=0.014  Sum_probs=73.2

Q ss_pred             HHHHHHHHHccCCCeEEEEeCCCCCh-------h------------HhhcC-------------Cccc-C--HHHHhccc
Q psy3240          53 IGLSVLEKLIPYKVSKFLYTSRSKKP-------E------------ADKRG-------------AEHT-N--IDDLCKQS   97 (274)
Q Consensus        53 IG~~iA~~L~~~G~~vv~~~~r~~~~-------~------------a~~~g-------------~~~~-s--l~ell~~a   97 (274)
                      ||..+|..+...|++|++|+......       +            ....|             +... +  +.+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            78999999999999999998766310       0            01111             1122 2  55788999


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhh----hhhhheeehh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI----ADIRVISISM  156 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L----~~~~i~~~D~  156 (274)
                      |+|+-++|...+.+..+-.+..+.++++++|.  +..+.+....|.+.+    +-.|++|.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~P  141 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNP  141 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCc
Confidence            99999999999999888777888899999994  444446667777766    4456777763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.60  E-value=0.0052  Score=58.56  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCC---------------------Chh-H----hh--cCCc--
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSK---------------------KPE-A----DK--RGAE--   86 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~---------------------~~~-a----~~--~g~~--   86 (274)
                      ..|++++|.|||+|.+|..+|+.|...|.. ..++|+..-                     +.. +    .+  .++.  
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            469999999999999999999999999974 444555421                     111 0    00  1111  


Q ss_pred             -------ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          87 -------HTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        87 -------~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                             ..+++++++++|+|+.++- +.+++.+++.-..
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~  138 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQ  138 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHH
Confidence                   0135677888898888874 5667777765443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.59  E-value=0.012  Score=55.49  Aligned_cols=93  Identities=23%  Similarity=0.290  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c------CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R------GAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~------g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      =++++|+|||.|.+|..+|-.|...|.  +.+.+|.......  +.+  .      .... .+..+.+++||+|+++.-.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            357899999999999999999987776  5667776544332  111  1      1111 1233568999999997643


Q ss_pred             Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcC
Q psy3240         107 TP---DTHH-LI--NR-------ARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~---~T~~-li--~~-------~~l~~mk~gailINv~  132 (274)
                      ..   .++. ++  |.       +.+..-.|.+++|+++
T Consensus        84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            21   1221 11  11       2233334789999998

>KOG0023|consensus

Probab=96.59  E-value=0.0047  Score=58.55  Aligned_cols=89  Identities=24%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--C------HHHHhcccCEEEEcCCCCccc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--N------IDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--s------l~ell~~aDvVil~lPlt~~T  110 (274)
                      .|+.+||+|+|-+|.--.+..+++|+++++.+....+.+  ...+|++..  +      .+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            899999999999999999999999998888877664444  455777531  1      234566677777777632  2


Q ss_pred             HHhccHHHHhcCCCCcEEEEcC
Q psy3240         111 HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~  132 (274)
                      .+-+ +..+..||++..+|-++
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEe
Confidence            2222 24566778777777665

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.59  E-value=0.01  Score=55.64  Aligned_cols=90  Identities=23%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh-cCCc--------ccCHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK-RGAE--------HTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~-~g~~--------~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|+|||.|.+|..+|..|...|  .+++++|.+.....  +.. ....        ..+-.+.++.||+|+++++....
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~   80 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQK   80 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCC
Confidence            47999999999999999998878  45677776554322  111 1111        11223568999999999986321


Q ss_pred             ---cHH--------hcc--HHHHhcCCCCcEEEEcC
Q psy3240         110 ---THH--------LIN--RARLESMKPGAILINTS  132 (274)
Q Consensus       110 ---T~~--------li~--~~~l~~mk~gailINv~  132 (274)
                         ++-        ++.  .+.+....+.+++++++
T Consensus        81 ~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          81 PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence               221        121  12233445778888885

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.55  E-value=0.0059  Score=51.89  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC-Cccc--CH-HHHhcccCEEEEcCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-AEHT--NI-DDLCKQSDFIIITSAL  106 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g-~~~~--sl-~ell~~aDvVil~lPl  106 (274)
                      -+|+|++|.|||.|.+|...++.|...|++++++++.. ..+..+.+ +...  .+ ++-+..+|+|+.++..
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d   80 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ   80 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHHHHhccCcEEEecccChhcCCCceEEEECCCC
Confidence            58999999999999999999999999999877775332 22222222 1111  22 2236778888887654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.011  Score=55.15  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc---ccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK---QSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~---~aDvVil~lPlt~  108 (274)
                      ..|++|.|+|.|.+|...++.++..|++ +++.+.+..+.+ +++.|+...      ++.+...   ..|+|+-++... 
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-  246 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-  246 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-
Confidence            4689999999999999999999999985 445554444444 667777532      3344332   279999887532 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .   .+ ...++.++++..++.++.
T Consensus       247 ~---~~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        247 S---SI-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---HH-HHHHHHhhcCCEEEEEcc
Confidence            1   12 356677899999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.48  E-value=0.013  Score=55.34  Aligned_cols=64  Identities=20%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh----h---cCC----cc-cCHHHHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD----K---RGA----EH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~----~---~g~----~~-~sl~ell~~aDvVil~l  104 (274)
                      ++.+||+|||.|.||..+|..+...|. +++++|.......  +.    .   .+.    .. .+. +.++.||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455899999999999999999877774 6677776554321  11    0   111    11 255 5779999999977

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.47  E-value=0.0091  Score=57.91  Aligned_cols=67  Identities=15%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCCc-ccCHHHHhcccCEEEEcCCCCc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGAE-HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~~-~~sl~ell~~aDvVil~lPlt~  108 (274)
                      .++|.|||+|.+|.++|+.|+..|.+++++|++...... ....-. ....+....++|+|+.+.+..+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~   71 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK   71 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence            478999999999999999999999977777755432211 000001 1133344577999988876554

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.47  E-value=0.021  Score=48.48  Aligned_cols=98  Identities=23%  Similarity=0.375  Sum_probs=67.0

Q ss_pred             CCCEEEEEc--cChHHHHHHHHHccCCCeEEEEeCCCC--Ch--h--------HhhcCC--cc-cCHHHHhcccCEEEEc
Q psy3240          41 QNSTVGIVG--CGRIGLSVLEKLIPYKVSKFLYTSRSK--KP--E--------ADKRGA--EH-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIG--lG~IG~~iA~~L~~~G~~vv~~~~r~~--~~--~--------a~~~g~--~~-~sl~ell~~aDvVil~  103 (274)
                      .|++|++||  -+++..+++..+..||+.+.+..+..-  ..  .        +...|.  .. .+++|.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  389999999999999997555555441  12  1        112233  22 3899999999999886


Q ss_pred             CCCC----cc-------cHHhccHHHHhcCCCCcEEEEcC---CCchhc
Q psy3240         104 SALT----PD-------THHLINRARLESMKPGAILINTS---RGQLVD  138 (274)
Q Consensus       104 lPlt----~~-------T~~li~~~~l~~mk~gailINv~---RG~iVd  138 (274)
                      .--+    +.       ....++++.++.+|++++|.-+.   ||.=|+
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~  129 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVS  129 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBE
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeC
Confidence            5541    11       01346889999999999999985   454333

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.47  E-value=0.014  Score=54.26  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hhh---c----CC--c--c-cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--ADK---R----GA--E--H-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~~---~----g~--~--~-~sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||.|.||..+|..+...|. +++++|.......  ..+   .    +.  .  . .+. +.++.||+|++++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            689999999999999999987654 7788886544322  110   1    11  1  1 144 45799999999863

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.46  E-value=0.016  Score=55.17  Aligned_cols=111  Identities=14%  Similarity=0.224  Sum_probs=61.9

Q ss_pred             CEEEEEccChHHHHHHHHHccC----------CCeEEEEeCCCC--------Chh-----HhhcCC--------cccCHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY----------KVSKFLYTSRSK--------KPE-----ADKRGA--------EHTNID   91 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~----------G~~vv~~~~r~~--------~~~-----a~~~g~--------~~~sl~   91 (274)
                      .+|+|+|+|.||+.+++.+...          +++++...++..        ...     ....+.        ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998644          565555444321        111     111121        012778


Q ss_pred             HHhc--ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhee
Q psy3240          92 DLCK--QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVIS  153 (274)
Q Consensus        92 ell~--~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~~  153 (274)
                      +++.  ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+. ..++|.+..++.|+.+
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~  147 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF  147 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence            8874  689999999975443111111123334556555544332322 3456666555555544

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.46  E-value=0.011  Score=56.23  Aligned_cols=90  Identities=23%  Similarity=0.276  Sum_probs=55.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccC-CCeEEEEeCCCCChh--HhhcC-C------cccCHHH-HhcccCEEEEcCCCCccc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKRG-A------EHTNIDD-LCKQSDFIIITSALTPDT  110 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g-~------~~~sl~e-ll~~aDvVil~lPlt~~T  110 (274)
                      ++|+|+|. |.+|+.+++.|... +++.+.+.++.....  ....+ .      .+.++++ ...++|+|++|+|... .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence            68999996 99999999999876 565555444432221  11111 1      1223333 4578999999999632 2


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCchh
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQLV  137 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~iV  137 (274)
                      ..++ .+.   ++.|..+||.|..=-.
T Consensus        82 ~~~v-~~a---~~aG~~VID~S~~fR~  104 (343)
T PRK00436         82 MDLA-PQL---LEAGVKVIDLSADFRL  104 (343)
T ss_pred             HHHH-HHH---HhCCCEEEECCcccCC
Confidence            2222 112   3578999999843334

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.45  E-value=0.035  Score=53.98  Aligned_cols=112  Identities=15%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc---CHHHHhcccCEEEEcCCCCcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT---NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~---sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++++|++.|+|.|.+|.++|+.|...|+++++++.......      ....++...   ..++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            57899999999999999999999999998887776532211      122344321   234566789999997655444


Q ss_pred             cHHhccH-----------HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         110 THHLINR-----------ARLES-MKPGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       110 T~~li~~-----------~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      ..-+.-.           +.+.. .+...+-|--+.|+.--.+-|...|+..|
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            4322211           11222 23223334445688877777777777654

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.44  E-value=0.016  Score=55.30  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcC------------------Ccc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRG------------------AEH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g------------------~~~-~sl~ell~~aDv   99 (274)
                      .+|||+|+|.||+.+++.+.. -++++++..++.....   +...|                  +.. .++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            479999999999999998875 4677666665432111   11111                  112 257788888999


Q ss_pred             EEEcCCCC
Q psy3240         100 IIITSALT  107 (274)
Q Consensus       100 Vil~lPlt  107 (274)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998853

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.38  E-value=0.028  Score=53.79  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             CCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCc-ccCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAE-HTNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~-~~sl~ell~~aDvVil~lPl  106 (274)
                      -.+|||||. .+|+.-++.++..  +++.++..++..+..   +.+.|+. +.+++|++++.|++++++|.
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt   72 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS   72 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence            368999999 6899999888765  476666665554332   5566765 35999999999999999985

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.38  E-value=0.011  Score=57.18  Aligned_cols=87  Identities=11%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCcc--------cCHHHH-hcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAEH--------TNIDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~~--------~sl~el-l~~aDvVil~lPlt~~T~  111 (274)
                      ++|.|+|+|.+|+.+|+.|...|.++++++.+..... ..+ .++..        ..++++ +..+|.|+++++....+.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~   80 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNM   80 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHH
Confidence            4799999999999999999999998877776544333 222 33321        134555 788999999998644332


Q ss_pred             HhccHHHHhcC-CCCcEEEEc
Q psy3240         112 HLINRARLESM-KPGAILINT  131 (274)
Q Consensus       112 ~li~~~~l~~m-k~gailINv  131 (274)
                        +-......+ +...+++-+
T Consensus        81 --~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         81 --VACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             --HHHHHHHHhcCCCeEEEEE
Confidence              222333344 444455444

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.38  E-value=0.0083  Score=57.72  Aligned_cols=61  Identities=20%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHh-hc-CC--cc---cCHHHHhcccCEEEE
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KR-GA--EH---TNIDDLCKQSDFIII  102 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-~~-g~--~~---~sl~ell~~aDvVil  102 (274)
                      +++|||||-|..|+.|+...+.+|.++++.++....+... .. .+  .+   ..+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999988888776655411 11 11  11   147889999999976

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.37  E-value=0.011  Score=52.79  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCcc----cCHHHHhcccCEEEEcCCCCcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAEH----TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~~----~sl~ell~~aDvVil~lPlt~~  109 (274)
                      -+|.||+|.|||-|..|..=|+.|...|++++++.+.. .++    ....++..    .+.+++. .+++|+.+++..+ 
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~~-   84 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDEE-   84 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCHH-
Confidence            47999999999999999999999999999888887766 333    22223222    1334443 4999999887533 


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         110 THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~  132 (274)
                          +|++.+..+++-.+++|+.
T Consensus        85 ----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          85 ----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             ----HHHHHHHHHHHhCCceecc
Confidence                4555566666666778874

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.37  E-value=0.014  Score=53.11  Aligned_cols=94  Identities=22%  Similarity=0.304  Sum_probs=58.1

Q ss_pred             EEEEcc-ChHHHHHHHHHccCC----CeEEEEeCCCCChh--Hh-------hc-CCc--cc-CHHHHhcccCEEEEcCCC
Q psy3240          45 VGIVGC-GRIGLSVLEKLIPYK----VSKFLYTSRSKKPE--AD-------KR-GAE--HT-NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        45 VGIIGl-G~IG~~iA~~L~~~G----~~vv~~~~r~~~~~--a~-------~~-g~~--~~-sl~ell~~aDvVil~lPl  106 (274)
                      |+|||. |.+|..+|..|...|    .+++.||....+..  ..       .. ...  .. ++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999987767    56777876554322  11       11 111  12 567899999999996532


Q ss_pred             Cc---ccH--------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 TP---DTH--------HLIN--RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 t~---~T~--------~li~--~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ..   .++        .++.  .+.+.+..|.+++||.+  .++|.-
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~  125 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDII  125 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHH
Confidence            11   111        1121  12344456899999995  445443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.34  E-value=0.011  Score=57.34  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcC-------Cc-ccCHHH-HhcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRG-------AE-HTNIDD-LCKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g-------~~-~~sl~e-ll~~aDvVil~lPlt  107 (274)
                      -..++|+|+|. |.+|+.+.+.|... ++++..+.++..... .....       .. ..++++ .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45569999996 99999999999876 565555544322211 11101       11 112222 258899999999963


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~  140 (274)
                       ..     .+..+.|+.|..+||.|..-..+.+
T Consensus       116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~  142 (381)
T PLN02968        116 -TT-----QEIIKALPKDLKIVDLSADFRLRDI  142 (381)
T ss_pred             -HH-----HHHHHHHhCCCEEEEcCchhccCCc
Confidence             33     3444445678999999965555444

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.31  E-value=0.045  Score=53.18  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh----h-HhhcCCccc---CHHHHhcc-cCEEEEcCCCCcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP----E-ADKRGAEHT---NIDDLCKQ-SDFIIITSALTPD  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~----~-a~~~g~~~~---sl~ell~~-aDvVil~lPlt~~  109 (274)
                      ++.||++.|+|.|.+|.++|+.|+..|+++++.+......    . ....|+...   ...+++.. .|+|+..--..+.
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            4789999999999999999999999999877776543221    1 223455432   23444554 8988875522222


Q ss_pred             cH----------HhccH-HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 TH----------HLINR-ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~----------~li~~-~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ..          .++.. +.+..+ +...+-|--+.|+.--..-+...|+..|.
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~  135 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ  135 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence            11          12222 222233 33344555567888877777777876553

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.30  E-value=0.0088  Score=53.52  Aligned_cols=36  Identities=33%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~   73 (274)
                      ..|.+++|.|+|+|.+|..+|+.|...|...+ ++|+
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            47999999999999999999999999998554 4443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.29  E-value=0.015  Score=54.45  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC---CCChh-HhhcCCcccC-----HHH--HhcccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR---SKKPE-ADKRGAEHTN-----IDD--LCKQSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r---~~~~~-a~~~g~~~~s-----l~e--ll~~aDvVil~lPlt~  108 (274)
                      ..|++|.|+|.|.+|...++.++..|+++++.+++   ..+.+ +++.|+...+     +.+  .....|+|+-++....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  250 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP  250 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence            36899999999999999999999999976666542   22222 5566765431     111  2235799999886321


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                          .+ .+.++.++++..++.++.
T Consensus       251 ----~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ----LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ----HH-HHHHHHccCCcEEEEEec
Confidence                22 356778899998888774

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.27  E-value=0.006  Score=54.76  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=48.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH-hh--cCCcc--------cCHHHH-hcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DK--RGAEH--------TNIDDL-CKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~--~g~~~--------~sl~el-l~~aDvVil~lPlt~  108 (274)
                      +++.|+|+|.+|..+|+.|...|..+++.+........ ..  .+...        ..|.++ +.++|+++.++..+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            57999999999999999999999988888766554331 12  32221        135555 788999999887543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.23  E-value=0.027  Score=53.03  Aligned_cols=98  Identities=18%  Similarity=0.283  Sum_probs=62.1

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCC-h--h-HhhcCCcc--cCHHHHhc-----ccCEEEEcCCCCcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKK-P--E-ADKRGAEH--TNIDDLCK-----QSDFIIITSALTPD  109 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~-~--~-a~~~g~~~--~sl~ell~-----~aDvVil~lPlt~~  109 (274)
                      ..+|||||.|+||+..+..+.. -+++.+...++... .  . +.+.|+..  .+.+++++     +.|+|+.++|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999997777654 45655544443332 1  2 55677754  37888884     58899999885322


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcC---CCch----hcHHHHHh
Q psy3240         110 THHLINRARLESMKPGAILINTS---RGQL----VDQEALID  144 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~---RG~i----Vde~aL~~  144 (274)
                      -+     -.....+.|..+|+-+   +|.+    |+.+++.+
T Consensus        84 ~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~  120 (302)
T PRK08300         84 VR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLD  120 (302)
T ss_pred             HH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHHhc
Confidence            11     1222246788888876   3444    45555543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.18  E-value=0.012  Score=59.28  Aligned_cols=86  Identities=16%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~  111 (274)
                      ..++.|+|+|++|+.+|+.|+..|.++++.|++..+.+ .++.|....     +.   ++ -++++|.++++++...++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~  496 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG  496 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence            35789999999999999999999998888887665444 455555321     22   21 2468999999998766655


Q ss_pred             HhccHHHHhcCCCCcEEE
Q psy3240         112 HLINRARLESMKPGAILI  129 (274)
Q Consensus       112 ~li~~~~l~~mk~gailI  129 (274)
                      .++-.  ..++.+...+|
T Consensus       497 ~iv~~--~~~~~~~~~ii  512 (558)
T PRK10669        497 EIVAS--AREKRPDIEII  512 (558)
T ss_pred             HHHHH--HHHHCCCCeEE
Confidence            55432  22334555554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.17  E-value=0.028  Score=52.03  Aligned_cols=107  Identities=15%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcccCHHHH-hcccCEEEEcCCCCcc--c---HH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHTNIDDL-CKQSDFIIITSALTPD--T---HH  112 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~sl~el-l~~aDvVil~lPlt~~--T---~~  112 (274)
                      ++++.|+|.|-.+++++..|...|++.+...+|+.+..   +...+....  +++ ...+|+|+.++|..-.  .   .-
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~  199 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIGMAGGPEADKL  199 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccccCCCCccccC
Confidence            57999999999999999999999986555555554332   222332211  111 2458999999996421  1   11


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .++.   +.++++.++.|+.-..  -+..|++.-+++|+..+|
T Consensus       200 pi~~---~~l~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~i~  237 (272)
T PRK12550        200 AFPE---AEIDAASVVFDVVALP--AETPLIRYARARGKTVIT  237 (272)
T ss_pred             CCCH---HHcCCCCEEEEeecCC--ccCHHHHHHHHCcCeEeC
Confidence            2333   3367788999987654  356777777888887776

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.15  E-value=0.018  Score=52.59  Aligned_cols=100  Identities=15%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      -.++-|+|.|.+++++|+.++.+|++++++|+|.....           .+.+..++.+....|          .+.+..
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~-----------~~~~~~~~~~~~~~~----------~~~~~~  158 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP-----------EDLPDGVATLVTDEP----------EAEVAE  158 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc-----------ccCCCCceEEecCCH----------HHHHhc
Confidence            36899999999999999999999999999988754110           001123333322111          123334


Q ss_pred             CCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240         122 MKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus       122 mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                      +.+++.+|=+.++--.|.++|...|++....||.+....++
T Consensus       159 ~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k  199 (246)
T TIGR02964       159 APPGSYFLVLTHDHALDLELCHAALRRGDFAYFGLIGSKTK  199 (246)
T ss_pred             CCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHH
Confidence            56778888888999899999999887666777777776544

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.14  E-value=0.018  Score=51.33  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r   74 (274)
                      ..|+.++|+|||+|.+|..+|+.|...|.. .+++|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999988885 4455544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.11  E-value=0.019  Score=52.21  Aligned_cols=89  Identities=22%  Similarity=0.260  Sum_probs=58.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C---HHHHh------cccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N---IDDLC------KQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s---l~ell------~~aDvVil~lPlt  107 (274)
                      ..|++|.|+|.|.+|..+++.++.+|++ +++.+.+..+.+ +++.|+... +   ..+.+      ...|+++-++...
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~  198 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT  198 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence            3689999999999999999999999996 444433333333 566676432 2   11211      2478888876532


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .    .+ ...++.++++..++.++.
T Consensus       199 ~----~~-~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       199 A----AV-RACLESLDVGGTAVLAGS  219 (280)
T ss_pred             H----HH-HHHHHHhcCCCEEEEecc
Confidence            2    12 245677888888888874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.10  E-value=0.015  Score=45.10  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             CCEEEEEccChHHHHHHHHHc-cCCCe-EEEEeCCCCChhHhhcCCccc-CHHHHhcc--cCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLI-PYKVS-KFLYTSRSKKPEADKRGAEHT-NIDDLCKQ--SDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~-~~G~~-vv~~~~r~~~~~a~~~g~~~~-sl~ell~~--aDvVil~lPlt~~T~~li~  115 (274)
                      ..++.|+|+|++|++++..+. ..|++ +.+++..+.+....-.|+... +++++.+.  .|+-++++|.. .....++
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~~   80 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVAD   80 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHHH
Confidence            457999999999999985543 34443 344454443322222355544 78887776  99999999953 3444443

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.04  Score=53.93  Aligned_cols=113  Identities=14%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCH-HHHhcccCEEEEcC--CCC-c----c
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNI-DDLCKQSDFIIITS--ALT-P----D  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl-~ell~~aDvVil~l--Plt-~----~  109 (274)
                      +++|++|.|+|+|..|.++|+.|+..|.++.++|....... ....|+..... .+-+..+|+|+..=  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            47899999999999999999999999997777664322221 23345543221 23356789887632  211 1    1


Q ss_pred             cH---H----hccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 TH---H----LINR-ARLES-M-----KPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~---~----li~~-~~l~~-m-----k~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ..   .    ++.+ +.+.. +     +...+-|--+.|+.--.+-|...|+..|.
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~  141 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGR  141 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence            11   1    1221 22222 2     23345566677998888888887877654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.014  Score=57.82  Aligned_cols=114  Identities=14%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ..+.+++|.|+|+|..|+++|+.|...|+++.++|++.....  ....|+...   ...+.+..+|+|+..--..+...-
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~   90 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL   90 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence            468899999999999999999999999997777664332221  233466542   233456778988775322222111


Q ss_pred             h----------ccHHHHh-c------C-CCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 L----------INRARLE-S------M-KPG-AILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 l----------i~~~~l~-~------m-k~g-ailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      +          +..-.+. .      + .+. .+-|--+-|+.--..-+...|+..|.
T Consensus        91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~  148 (473)
T PRK00141         91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF  148 (473)
T ss_pred             HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence            1          2221221 1      1 122 33344455888777777777876554

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.08  E-value=0.029  Score=52.80  Aligned_cols=99  Identities=23%  Similarity=0.332  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCc------
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTP------  108 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~------  108 (274)
                      .+.|++|++||=   +++..+++..+..+|+++++..+..-.+... .... ..+++++++.+|+|....=-.+      
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~  231 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLRVQKERMDGGL  231 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECCcccccccccc
Confidence            589999999997   5999999999999999777666544332211 0112 2489999999999988541100      


Q ss_pred             --cc-----HHhccHHHHhcCCCCcEEEEcC---CCchhc
Q psy3240         109 --DT-----HHLINRARLESMKPGAILINTS---RGQLVD  138 (274)
Q Consensus       109 --~T-----~~li~~~~l~~mk~gailINv~---RG~iVd  138 (274)
                        +-     ...++++.++.+|++++|.-+-   ||.=|+
T Consensus       232 ~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~  271 (305)
T PRK00856        232 LPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIA  271 (305)
T ss_pred             hHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccC
Confidence              11     1235788898899999988764   565333

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.07  E-value=0.015  Score=59.37  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~  111 (274)
                      ..+|.|+|+|++|+.+|+.|+..|.++++.|.+....+ .++.|....     +.   ++ -+++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            46799999999999999999999998888887665444 455565321     22   22 1568999999999866655


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      .++  ...+++.|...+|--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            554  33445556656655444

>KOG2304|consensus

Probab=96.06  E-value=0.0023  Score=58.13  Aligned_cols=105  Identities=24%  Similarity=0.282  Sum_probs=62.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh---c--------C-Cc------------------cc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK---R--------G-AE------------------HT   88 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~---~--------g-~~------------------~~   88 (274)
                      -.-+.|+|||.|.||..+|+.....|..+++++....... +.+   .        + ..                  ..
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            4457899999999999999999999998888876544221 110   0        0 00                  01


Q ss_pred             CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHh
Q psy3240          89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVDQEALID  144 (274)
Q Consensus        89 sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVde~aL~~  144 (274)
                      ++.++++.+|+|+=++-.+-..+.-+-++.=...|+.+++ .|+|+-.+-+.....+
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~  145 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQ  145 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhcc
Confidence            4455566677666555433333222222333345777776 5777766555444333

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.05  E-value=0.013  Score=53.22  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~   73 (274)
                      ..|++++|+|||+|.+|..+|+.|...|...+ ++|.
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            57999999999999999999999998887544 4443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.02  E-value=0.021  Score=54.48  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r   74 (274)
                      ..|+.++|.|||+|.+|..+|+.|...|. +..++|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999998888 45566654

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.01  E-value=0.024  Score=52.48  Aligned_cols=106  Identities=24%  Similarity=0.286  Sum_probs=63.4

Q ss_pred             CCEEEEEccChHHH-HHHHHHccCC--CeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhcc--cCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGL-SVLEKLIPYK--VSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCKQ--SDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~-~iA~~L~~~G--~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~~--aDvVil~lPlt~~T~  111 (274)
                      -.+|||||+|.+++ ..+..++..+  +..+...++.... .  +.+.++.  +.+++++++.  .|+|++++|..-...
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            35899999997775 5777887765  4555554444432 2  5667764  4589999986  599999999644333


Q ss_pred             HhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHhhhhhhhh
Q psy3240         112 HLINRARLESMKPGAILINT-SRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv-~RG~iVde~aL~~~L~~~~i  151 (274)
                      ..  ...|++=|  .+++.= -.-.+.+.++|++.-++.|+
T Consensus        83 ~~--~~AL~aGk--hVl~EKPla~t~~ea~~l~~~a~~~~~  119 (342)
T COG0673          83 LA--LAALEAGK--HVLCEKPLALTLEEAEELVELARKAGV  119 (342)
T ss_pred             HH--HHHHhcCC--EEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            22  23333222  233331 12233456667765555443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.99  E-value=0.018  Score=53.68  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCcc------------cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEH------------TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~------------~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+|+|.|.||.-+|-.|...|.++..+.+.....+ .. +.|...            ....+....+|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            5799999999999999999999997777766432222 11 112210            11122345789999998754 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ++...+ +...+.+.+++.+|-.--| +-.++.+.+.+.+
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~  119 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPH  119 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCC
Confidence            344443 3455667788877766443 2344556565543

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.95  E-value=0.041  Score=52.10  Aligned_cols=88  Identities=19%  Similarity=0.276  Sum_probs=61.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc----C---HHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|++|.|.|.|.+|..+++.++.+|+++++.+....+..  +++.|+...    +   +.++....|+|+-++....   
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~---  259 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH---  259 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH---
Confidence            689999999999999999999999997666655444322  345676421    1   2233335799998775211   


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                       .+ .+.++.++++..++.++.
T Consensus       260 -~~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        260 -AL-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -HH-HHHHHHhcCCcEEEEeCC
Confidence             12 246777899999998874

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.95  E-value=0.02  Score=56.86  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhhc--CCccc---CHHHHhcccCEEEEc--CCCC-
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKR--GAEHT---NIDDLCKQSDFIIIT--SALT-  107 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~--g~~~~---sl~ell~~aDvVil~--lPlt-  107 (274)
                      ++.+++|.|+|+|..|.++|+.|+..|.++.++|.+...+.   ....  |+...   ...+.+..+|+|+..  +|.+ 
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~   83 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE   83 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence            46789999999999999999999999998888776543221   2222  33321   134556789999886  3332 


Q ss_pred             ----ccc-------HHhccH-HHHhc-C--------CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         108 ----PDT-------HHLINR-ARLES-M--------KPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       108 ----~~T-------~~li~~-~~l~~-m--------k~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                          |..       ..++.. +.+.. +        ++..+-|--+-|+.--..-+...|+..|.
T Consensus        84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~  148 (498)
T PRK02006         84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK  148 (498)
T ss_pred             cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence                111       112211 22211 2        12234444455887777777777877665

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.94  E-value=0.05  Score=50.00  Aligned_cols=64  Identities=14%  Similarity=0.258  Sum_probs=43.4

Q ss_pred             CEEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCCC-h---h-Hhh-----cCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSKK-P---E-ADK-----RGAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~~-~---~-a~~-----~g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      .+|+|+| +|.||+.+++.+.. -+++.+...++... .   . ...     .++.. .+++++...+|+|+.+.|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p   78 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP   78 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence            4899999 69999999999874 57876665543221 1   1 111     23433 3788886679999998864

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.92  E-value=0.042  Score=54.74  Aligned_cols=103  Identities=14%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhHh-hc----------------------C
Q psy3240          38 PALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KR----------------------G   84 (274)
Q Consensus        38 ~~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-~~----------------------g   84 (274)
                      .++.|++|+|+|+          ..-...+++.|...|.++.+||+........ ..                      .
T Consensus       320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (473)
T PLN02353        320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ  399 (473)
T ss_pred             cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence            3689999999998          4578899999999999888888764332211 11                      1


Q ss_pred             Cccc-CHHHHhcccCEEEEcCCCCcccHHhccH-HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          85 AEHT-NIDDLCKQSDFIIITSALTPDTHHLINR-ARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        85 ~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~-~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +..+ +++++++.||+|+++++-. +-+. ++- +..+.|++..+++|. |+- .|.+.+.+
T Consensus       400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~~  457 (473)
T PLN02353        400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLRE  457 (473)
T ss_pred             eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHHh
Confidence            1223 5678999999999988753 3333 343 335567766689995 433 46655544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.91  E-value=0.031  Score=60.51  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccC-CCe-------------EEEEeCCCCChh--Hhhc-CC---c--ccCHHH---Hh
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPY-KVS-------------KFLYTSRSKKPE--ADKR-GA---E--HTNIDD---LC   94 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~-G~~-------------vv~~~~r~~~~~--a~~~-g~---~--~~sl~e---ll   94 (274)
                      -+.|+|+|||.|.||+..|+.|... +.+             +.+.+......+  +... ++   .  ..+.++   ++
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            3578999999999999999999753 332             344444332222  2222 32   1  124444   44


Q ss_pred             cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240          95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                      +++|+|++++|..-  ..-+-+   ..++.|.-+++.+ -..-+..+|.+.-++.|+.
T Consensus       647 ~~~DaVIsalP~~~--H~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~  698 (1042)
T PLN02819        647 SQVDVVISLLPASC--HAVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGIT  698 (1042)
T ss_pred             cCCCEEEECCCchh--hHHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCE
Confidence            68999999999632  111212   2234555666665 2333555666766666663

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.90  E-value=0.046  Score=53.05  Aligned_cols=90  Identities=17%  Similarity=0.267  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc
Q psy3240          39 ALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        39 ~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++.|++|+|+|+          ..-...+++.|...|+++.+||+..........+ ...++++.++.+|+|+++++.. 
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~-  387 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD-  387 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence            589999999998          4578899999999999888888764432221111 1248889999999999988743 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEc
Q psy3240         109 DTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv  131 (274)
                      +-+. ++-+.+..+-+..+++|.
T Consensus       388 ~~~~-~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       388 EFKD-LDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HHhc-cCHHHHHHhcCCCEEEeC
Confidence            2222 344444433234578875

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.89  E-value=0.033  Score=54.71  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEccChHHHH-HHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccH--
Q psy3240          39 ALQNSTVGIVGCGRIGLS-VLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTH--  111 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~-iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~--  111 (274)
                      ..++++|.|+|+|..|.+ +|+.|+..|.++.++|.+.....  ..+.|+...  ...+.+..+|+|+..--..+...  
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~   83 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPEL   83 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHH
Confidence            457889999999999999 79999999998877776543222  233465442  22345678998887543322222  


Q ss_pred             --------HhccH-HHHhcC-CC-CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         112 --------HLINR-ARLESM-KP-GAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       112 --------~li~~-~~l~~m-k~-gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                              .+++. +++..+ ++ ..+-|--+-|+.-...-+...|+..|.
T Consensus        84 ~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         84 VAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence                    12332 333333 32 344455556888888888888887774

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=95.86  E-value=0.062  Score=51.23  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             CCCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEE
Q psy3240          37 GPALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFII  101 (274)
Q Consensus        37 g~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVi  101 (274)
                      |..+.|++|++||=+  ++..+++..+..+|+++.+..++.-.+.          +...|..  . .+++++++++|+|.
T Consensus       151 g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVy  230 (334)
T PRK01713        151 DKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVH  230 (334)
T ss_pred             CCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEE
Confidence            446899999999976  6889999999999998777766543221          1223543  2 48999999999999


Q ss_pred             EcC----CCCcc---c------HHhccHHHHhcC-CCCcEEEEcC
Q psy3240         102 ITS----ALTPD---T------HHLINRARLESM-KPGAILINTS  132 (274)
Q Consensus       102 l~l----Plt~~---T------~~li~~~~l~~m-k~gailINv~  132 (274)
                      .-.    ....+   .      ...++.+.++.. |++++|.-+.
T Consensus       231 t~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        231 TDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             EcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            832    11001   1      112577888886 7899998775

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.86  E-value=0.028  Score=52.49  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHH-HHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NID-DLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~-ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .|.+|.|.|.|.+|...++.++..|+++++.+.+..+.+ +++.|+..+ +.. +.-...|+++.+....    ..+ ..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~----~~~-~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG----GLV-PP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH----HHH-HH
Confidence            589999999999999999999999997666665544444 677887543 221 1123468777766532    122 35


Q ss_pred             HHhcCCCCcEEEEcCC
Q psy3240         118 RLESMKPGAILINTSR  133 (274)
Q Consensus       118 ~l~~mk~gailINv~R  133 (274)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7788899999988874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.84  E-value=0.02  Score=53.22  Aligned_cols=60  Identities=22%  Similarity=0.374  Sum_probs=40.6

Q ss_pred             EEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh---hc----CC----cc-cCHHHHhcccCEEEEcCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD---KR----GA----EH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~---~~----g~----~~-~sl~ell~~aDvVil~lP  105 (274)
                      |+|||.|.||..+|..+...|. +++++|.......  ..   ..    +.    .. .+. +.++.||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999998875554 7888887654321  11   10    11    11 244 45899999999774

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.84  E-value=0.018  Score=59.03  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=60.4

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHH----HhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDD----LCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~e----ll~~aDvVil~lPlt~~T~  111 (274)
                      ..+|-|+|+|++|+.+|+.|++.|.+.++.|.+....+ .++.|....     +.+-    -++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            47899999999999999999999998888887665544 455565421     2221    2458999999998766555


Q ss_pred             HhccHHHHhcCCCCcEEEEc
Q psy3240         112 HLINRARLESMKPGAILINT  131 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv  131 (274)
                      .+.  ...+.+.|...++--
T Consensus       480 ~i~--~~ar~~~p~~~iiaR  497 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIAR  497 (621)
T ss_pred             HHH--HHHHHhCCCCeEEEE
Confidence            443  334444555555443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.026  Score=55.53  Aligned_cols=114  Identities=14%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-----h-HhhcCCccc--CHHHHhcccCEEEEcCCCCcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-----E-ADKRGAEHT--NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-----~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~  109 (274)
                      .++.+++|.|||.|.+|.++|+.|+..|.++++++.+....     . ..+.|+...  .-.+....+|+|+++.-..+.
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD   91 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence            46789999999999999999999999999877777554211     1 234466542  111244569999988754444


Q ss_pred             cHHh----------ccH-HHH-hcCCC----CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 THHL----------INR-ARL-ESMKP----GAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~~l----------i~~-~~l-~~mk~----gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      +.-+          ++. +.+ ..+.+    ..+-|--+.|+.--..-+...|+..|.
T Consensus        92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~  149 (480)
T PRK01438         92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL  149 (480)
T ss_pred             CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence            3322          221 232 23322    234454456887777777777776543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.81  E-value=0.026  Score=51.21  Aligned_cols=37  Identities=30%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r   74 (274)
                      ..|++++|.|+|+|.+|..+|+.|...|...+. +|..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            468999999999999999999999988875544 4443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.79  E-value=0.019  Score=48.25  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             EEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240          45 VGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--------TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        45 VGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--------~sl~ell~~aDvVil~lPlt~~  109 (274)
                      |.|+|. |.+|+.+++.|...|.++++..++..+... ..+++.        .++.+.++.+|+|+.+++....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            678995 999999999999999988887766553322 223321        1456788899999999986444

...

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.77  E-value=0.088  Score=49.49  Aligned_cols=102  Identities=23%  Similarity=0.369  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeCCCCC-h-h----HhhcCCcc---cCHHHHhcccCEEEEcCCC
Q psy3240          39 ALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTSRSKK-P-E----ADKRGAEH---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        39 ~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~r~~~-~-~----a~~~g~~~---~sl~ell~~aDvVil~lPl  106 (274)
                      .+.|++|+++|-|   ++.++++..+..+|+++.+..+..-. + .    +.+.|...   .++++.++.+|+|...--.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            5899999999985   99999999999999987777665431 1 1    22345432   4899999999999884211


Q ss_pred             Cc-----cc------HHhccHHHHhcCCCCcEEEEcC-CCchhcHH
Q psy3240         107 TP-----DT------HHLINRARLESMKPGAILINTS-RGQLVDQE  140 (274)
Q Consensus       107 t~-----~T------~~li~~~~l~~mk~gailINv~-RG~iVde~  140 (274)
                      .+     ..      ..-++++.++.++++++|.-+. ||.=|+.+
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~  272 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS  272 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence            00     01      1235778899999999998654 66644433

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.77  E-value=0.023  Score=56.14  Aligned_cols=75  Identities=9%  Similarity=-0.052  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCccc--C-HHHHhcccCEEEEcCCCCcccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAEHT--N-IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~~~--s-l~ell~~aDvVil~lPlt~~T~  111 (274)
                      -+|+|++|.|||-|.++..=++.|..+|+++.++.+......  .... .+...  + .++.++.+++|+.++...+-++
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~   87 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQ   87 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhH
Confidence            489999999999999999999999999998777765443221  1111 22221  1 2345688999988877544443


Q ss_pred             H
Q psy3240         112 H  112 (274)
Q Consensus       112 ~  112 (274)
                      .
T Consensus        88 ~   88 (457)
T PRK10637         88 R   88 (457)
T ss_pred             H
Confidence            3

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.76  E-value=0.029  Score=52.94  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEE
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFL   70 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~   70 (274)
                      +|+|||+|.+|..+|+.|...|...+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~It   27 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHIT   27 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence            589999999999999999999886544

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.68  E-value=0.034  Score=52.31  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-------------ccCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-------------HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-------------~~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|.|+|.|.||.-++.+|...|. .+....|.+..+ ..+.|..             .....+.+..+|+|++++-. -
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~-~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGH-DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC-eEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence            589999999999999999999994 555555555422 2222321             11234566689999998864 3


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEc
Q psy3240         109 DTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv  131 (274)
                      ++...+ +...+.+++.+.++-+
T Consensus        79 q~~~al-~~l~~~~~~~t~vl~l  100 (307)
T COG1893          79 QLEEAL-PSLAPLLGPNTVVLFL  100 (307)
T ss_pred             cHHHHH-HHhhhcCCCCcEEEEE
Confidence            444444 4566677888766643

>PRK14851 hypothetical protein; Provisional

Probab=95.68  E-value=0.0083  Score=62.22  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             chhhhhHHHHHHHhhhccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEE
Q psy3240           2 YRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY   71 (274)
Q Consensus         2 ~~~~~~~~~l~~~r~~~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~   71 (274)
                      -+..++|-+++...|.....+++-.|  |...  .-..|++++|+|+|+|.+|..+|..|...|...+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~ry~R~~~l--~g~e--~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~L   72 (679)
T PRK14851          7 LETLQTLGISSAAEYREAAFSRNIGL--FTPG--EQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHI   72 (679)
T ss_pred             HHHHHHcCCCCHHHHHHHHhhhhHHh--cCHH--HHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEE
Confidence            35567777777777765444443222  1111  115699999999999999999999999888755443

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.68  E-value=0.089  Score=49.89  Aligned_cols=97  Identities=24%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCC--CeEEEEeCCCCChhHhh---c--CCccc------CHHHHhcccCEEEEc
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADK---R--GAEHT------NIDDLCKQSDFIIIT  103 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~---~--g~~~~------sl~ell~~aDvVil~  103 (274)
                      ..++.++|+|+|. |.+|..+|..|...+  -+.+.+|.......+.+   .  .....      +..+.++.||+|+++
T Consensus         4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            4577889999999 999999999998444  45666765221211111   0  11111      126789999999988


Q ss_pred             CCCCcc---cH-HhccH------HH---HhcCCCCcEEEEcCCC
Q psy3240         104 SALTPD---TH-HLINR------AR---LESMKPGAILINTSRG  134 (274)
Q Consensus       104 lPlt~~---T~-~li~~------~~---l~~mk~gailINv~RG  134 (274)
                      +-....   ++ .++..      +.   +..-.+.++++.++-+
T Consensus        84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP  127 (321)
T PTZ00325         84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP  127 (321)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            754221   22 22221      22   3333567788887643

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.67  E-value=0.064  Score=50.09  Aligned_cols=215  Identities=15%  Similarity=0.185  Sum_probs=104.6

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh---h-HhhcCCcc--cCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP---E-ADKRGAEH--TNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~---~-a~~~g~~~--~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      .+|||||.|+||+..+..+.. -+++.....++....   . +.+.|+..  .+.+++++  +.|+|++++|.....+  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            479999999999988766653 356555444333321   2 55567653  37888885  5788999998642221  


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCc-------hhcHHHHHhhhhhhhheeehhhccccc--ccceeecCCCcccCccceeeee
Q psy3240         114 INRARLESMKPGAILINTSRGQ-------LVDQEALIDFIADIRVISISMVTNEKH--LHRVFTLGDSFHKGHVSAFIFI  184 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~-------iVde~aL~~~L~~~~i~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  184 (274)
                         -....++.|..+++-.--.       .|+.+++.+   ..++.++-|.....-  ...+.-+.+..+. ....=|.+
T Consensus        80 ---~a~~al~aGk~VIdekPa~~~plvvp~VN~~~~~~---~~~~~iv~c~~~atip~~~al~r~~d~~~~-~iv~ti~s  152 (285)
T TIGR03215        80 ---HARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHLD---APNVNMVTCGGQATIPIVAAISRVAPVHYA-EIVASIAS  152 (285)
T ss_pred             ---HHHHHHHcCCEEEECCccccCCccCCCcCHHHHhc---CcCCCEEEcCcHHHHHHHHHHHHhhccccE-EEEEEEEe
Confidence               1223346677777765333       255554443   122222222221110  0111122222222 11111122


Q ss_pred             ecc-cCCccceeeeh-hhhHHHhc--CceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHH
Q psy3240         185 HMI-MGDTVGIYFIF-SASDVLKA--KKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII  260 (274)
Q Consensus       185 ~~i-~~~~~~~~~~~-~~~~~l~~--g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~  260 (274)
                      --. +|...++.++. .-..+++.  |--.|-++=+.    -|++.|+.-..-|.+..  .....++........++.++
T Consensus       153 ~S~g~g~r~~idel~~~t~~~~~~~gG~~~~k~~~~~----~~a~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  226 (285)
T TIGR03215       153 RSAGPGTRANIDEFTETTSRALEQVGGAKKGKAIIIL----NPAEPPLMMRDTIYCLV--EDPDEDAIEASVEEMVAEVQ  226 (285)
T ss_pred             eccCCCchhHHHHHHHHHHHHHHHcCCcccceEEEEe----cCCCCCccceeeEEEec--CCCCHHHHHHHHHHHHHHHH
Confidence            222 33333433332 11222211  11111111111    13445555555554433  33566777777777788999


Q ss_pred             HHHcCCCCCCcc
Q psy3240         261 NTFHNKPMIYEV  272 (274)
Q Consensus       261 ~~~~g~~~~~~v  272 (274)
                      +|.-|-.++.++
T Consensus       227 ~~vpgy~~~~~~  238 (285)
T TIGR03215       227 KYVPGYRLKQEP  238 (285)
T ss_pred             hhCCCEEeeece
Confidence            999886665543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.64  E-value=0.053  Score=50.07  Aligned_cols=87  Identities=14%  Similarity=0.028  Sum_probs=56.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHH-HhcccCEEEEcCCCCcccHHhccH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDD-LCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~e-ll~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..|+++.|+|.|.||...++.++.+|+++++..++.....  +....  ..+..+ .-...|+|+-++....    .+ .
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~----~~-~  215 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPS----LI-D  215 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHH----HH-H
Confidence            3578999999999999999999999997665544332221  22211  122222 2235799998876321    12 3


Q ss_pred             HHHhcCCCCcEEEEcCC
Q psy3240         117 ARLESMKPGAILINTSR  133 (274)
Q Consensus       117 ~~l~~mk~gailINv~R  133 (274)
                      ..++.++++..++.+|-
T Consensus       216 ~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       216 TLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             HHHHhhhcCcEEEEEee
Confidence            56778899999998874

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.63  E-value=0.015  Score=56.84  Aligned_cols=113  Identities=18%  Similarity=0.122  Sum_probs=67.6

Q ss_pred             CEEEEEccChHHHHHHH---HH---ccCCCeEEEEeCCCCChh-H--------hhcCC----c-ccCHHHHhcccCEEEE
Q psy3240          43 STVGIVGCGRIGLSVLE---KL---IPYKVSKFLYTSRSKKPE-A--------DKRGA----E-HTNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~---~L---~~~G~~vv~~~~r~~~~~-a--------~~~g~----~-~~sl~ell~~aDvVil  102 (274)
                      .+|+|||.|.+|.+.+.   .+   ...|.+++.||.+..... .        ...+.    . ..++.+.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998655   22   334556777776543322 1        11111    1 1278899999999999


Q ss_pred             cCCCCcc---cH---------------------Hhc--------cHHHHhcC---CCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         103 TSALTPD---TH---------------------HLI--------NRARLESM---KPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       103 ~lPlt~~---T~---------------------~li--------~~~~l~~m---k~gailINv~RG~iVde~aL~~~L~  147 (274)
                      ++|....   .+                     +++        -.+..+.+   .|.++++|.+--.-+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            9984110   00                     011        11223333   3799999998766666667766554


Q ss_pred             hhhheeeh
Q psy3240         148 DIRVISIS  155 (274)
Q Consensus       148 ~~~i~~~D  155 (274)
                      .+.++.+|
T Consensus       161 ~rviG~c~  168 (423)
T cd05297         161 IKTVGLCH  168 (423)
T ss_pred             CCEEEECC
Confidence            44455554

linked to 3D####ucture

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.62  E-value=0.035  Score=53.15  Aligned_cols=61  Identities=23%  Similarity=0.391  Sum_probs=44.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC----Cccc---CHHHHhcccCEEEE
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG----AEHT---NIDDLCKQSDFIII  102 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g----~~~~---sl~ell~~aDvVil  102 (274)
                      .++|||||-|..|+.+++.++.+|.+++++++....+...-..    ..+.   .+.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            4789999999999999999999999888888765443311111    1122   36678889999865

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.61  E-value=0.041  Score=43.70  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=51.1

Q ss_pred             ccChHHHHHHHHHccC----CCeEEEEeCCCC---Chh-Hhh-cCCcccCHHHHhc--ccCEEEEcCCCCcccHHhccHH
Q psy3240          49 GCGRIGLSVLEKLIPY----KVSKFLYTSRSK---KPE-ADK-RGAEHTNIDDLCK--QSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        49 GlG~IG~~iA~~L~~~----G~~vv~~~~r~~---~~~-a~~-~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~~~  117 (274)
                      |+|.||+.+++.++..    +++++...++..   ... ... ......++++++.  ..|+|+=|.+..+..     +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence            8999999999999764    666655555541   111 111 2223358999988  899999996542222     22


Q ss_pred             HHhcCCCCcEEEEcCCCchh
Q psy3240         118 RLESMKPGAILINTSRGQLV  137 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iV  137 (274)
                      ..+.|+.|.-+|-.+-+.+.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHH
T ss_pred             HHHHHHCCCeEEEECHHHhh
Confidence            34445778888888877777

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.61  E-value=0.069  Score=51.05  Aligned_cols=95  Identities=15%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCCh--h----H----hhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKP--E----A----DKRGAE--H-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~--~----a----~~~g~~--~-~sl~ell~~aDvVil~  103 (274)
                      ..+.|++|+++|= .++..+++..+..+|+++.++.+..-..  .    +    ...|..  . .+++++++.+|+|..-
T Consensus       150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~  229 (338)
T PRK02255        150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD  229 (338)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4699999999996 6899999999999999877776653211  1    1    112432  2 4899999999999993


Q ss_pred             C-----CCCc--cc-------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         104 S-----ALTP--DT-------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       104 l-----Plt~--~T-------~~li~~~~l~~mk~gailINv~  132 (274)
                      .     ....  ..       ...++++.++.+|++++|.-+.
T Consensus       230 ~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        230 VWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             ccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence            3     1100  00       1456889999999999998875

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.61  E-value=0.0092  Score=49.71  Aligned_cols=92  Identities=15%  Similarity=0.259  Sum_probs=56.5

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKP  124 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~  124 (274)
                      +.|+|.|.+++++++.++.+|++++++++|...-                ..++-+. +.+.    ..+.  +.+ .+.+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~----------------~~~~~~~-~~~~----~~~~--~~~-~~~~   56 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF----------------PEADEVI-CIPP----DDIL--EDL-EIDP   56 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------TTSSEEE-CSHH----HHHH--HHC--S-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc----------------CCCCccE-ecCh----HHHH--hcc-CCCC
Confidence            4689999999999999999999999999884311                1233322 2221    1111  112 3567


Q ss_pred             CcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240         125 GAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus       125 gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                      ++.+| +.++.-.|.++|...|+. ...|+.+....++
T Consensus        57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~lGS~~k   92 (136)
T PF13478_consen   57 NTAVV-MTHDHELDAEALEAALAS-PARYIGLLGSRRK   92 (136)
T ss_dssp             T-EEE---S-CCCHHHHHHHHTTS-S-SEEEESS-HHH
T ss_pred             CeEEE-EcCCchhHHHHHHHHHcC-CCCEEEeecCchH
Confidence            77766 888888999888887776 7888888877665

>PRK08223 hypothetical protein; Validated

Probab=95.60  E-value=0.05  Score=50.94  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil  102 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+ ++|...-...  -+       ..|-..+     .+.++-..+++...
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999888554 4444332221  11       1121111     23444456677666


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcH-HHHHhhhhhhhheeehh
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ-EALIDFIADIRVISISM  156 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde-~aL~~~L~~~~i~~~D~  156 (274)
                      ....++++.    .++++   .--++||..----.+. ..+.+.-...++-++..
T Consensus       103 ~~~l~~~n~----~~ll~---~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~  150 (287)
T PRK08223        103 PEGIGKENA----DAFLD---GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA  150 (287)
T ss_pred             ecccCccCH----HHHHh---CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence            666555431    12332   2346666642211122 23334444556655553

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.59  E-value=0.081  Score=52.19  Aligned_cols=110  Identities=10%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcc----ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccH
Q psy3240          39 ALQNSTVGIVGC----GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        39 ~L~gktVGIIGl----G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      -++=++|+|||.    |++|..+.+.|+..|+  +++.++++..    .-.|... .+++|+-...|++++++|. +.+.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~   78 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVP   78 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence            356789999999    8899999999998776  3444444322    1235544 3899998889999999994 4445


Q ss_pred             HhccHHHHhcCCCCcE-EEEcCCCc-----hhcHHHHHhhhhhhhheeeh
Q psy3240         112 HLINRARLESMKPGAI-LINTSRGQ-----LVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       112 ~li~~~~l~~mk~gai-lINv~RG~-----iVde~aL~~~L~~~~i~~~D  155 (274)
                      .++.+ .. ..+-.++ ++.-+-++     ...++++.+..++.|+.++.
T Consensus        79 ~~l~e-~~-~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        79 QVVEE-CG-EKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HHHHH-HH-hcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            55532 22 2343344 44333222     23467888888888887776

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.59  E-value=0.066  Score=50.35  Aligned_cols=116  Identities=20%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             hhhccchhccCCCCccCCCC----------CCCCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh----
Q psy3240          15 KYVSTPVSCRGEWKSWAPNF----------MCGPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE----   79 (274)
Q Consensus        15 r~~~~~~~~~~~w~~~~~~~----------~~g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~----   79 (274)
                      ++.+-|+...|. ...+|..          ..| .+.|++|+++|= +++.++++..+..+|+++.+..+..-.+.    
T Consensus       117 ~~~~vPVINag~-~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~  194 (304)
T PRK00779        117 EYSTVPVINGLT-DLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIV  194 (304)
T ss_pred             HhCCCCEEeCCC-CCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHH
Confidence            444666665554 3345531          123 489999999996 89999999999999997777666543321    


Q ss_pred             ---HhhcCCc--c-cCHHHHhcccCEEEEcC----CCCc---c-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240          80 ---ADKRGAE--H-TNIDDLCKQSDFIIITS----ALTP---D-----THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        80 ---a~~~g~~--~-~sl~ell~~aDvVil~l----Plt~---~-----T~~li~~~~l~~mk~gailINv~  132 (274)
                         +...|..  . .+++++++.+|+|..-.    ....   +     ...-++++.++.+|++++|.-+.
T Consensus       195 ~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        195 EKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             HHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence               1224543  2 48999999999999852    1101   1     12235778898899999998875

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.55  E-value=0.025  Score=49.72  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             EEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240          45 VGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEH--------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        45 VGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~--------~sl~ell~~aDvVil~lPlt  107 (274)
                      |.|+|. |.+|+.+++.|.+.+.++.+..+......   ....|++.        .++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678995 99999999999998888877776654322   23456642        14667899999999999954

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.55  E-value=0.044  Score=45.02  Aligned_cols=107  Identities=14%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             EEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh--H-------hhcCCccc-----CHHHHhcccCEEEEcCCCCc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE--A-------DKRGAEHT-----NIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~--a-------~~~g~~~~-----sl~ell~~aDvVil~lPlt~  108 (274)
                      +|.|+|+|.+|..+|+.|...|.. ..++|+..-...  .       ...|...+     .+.++-+..++-......++
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            589999999999999999999985 455555433222  1       11122111     12233333444333222211


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .       .....+++--++|++.-. .-....+.+..+..++.++++-+
T Consensus        81 ~-------~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~  122 (143)
T cd01483          81 D-------NLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG  122 (143)
T ss_pred             h-------hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence            1       113334666788887544 44566677777777888887666

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.54  E-value=0.29  Score=45.70  Aligned_cols=31  Identities=16%  Similarity=0.469  Sum_probs=27.6

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccC----CC
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPY----KV   66 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~----G~   66 (274)
                      .|..|...+|.|+|.|.-|-.+|+.+...    |.
T Consensus        19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~   53 (279)
T cd05312          19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGL   53 (279)
T ss_pred             hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999766    76

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PLN02527 aspartate carbamoyltransferase

Probab=95.50  E-value=0.084  Score=49.72  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEccC---hHHHHHHHHHccC-CCeEEEEeCCCCCh--h----HhhcCCcc---cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGCG---RIGLSVLEKLIPY-KVSKFLYTSRSKKP--E----ADKRGAEH---TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGlG---~IG~~iA~~L~~~-G~~vv~~~~r~~~~--~----a~~~g~~~---~sl~ell~~aDvVil~lP  105 (274)
                      .+.|++|+++|-+   ++..+++..+..+ |+++.+..+..-..  .    +.+.|...   .++++.++.||+|....-
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            4899999999965   6899999998887 89766666544211  1    22234432   389999999999999442


Q ss_pred             CCc------c-c-----HHhccHHHHhcCCCCcEEEEcC-CCc
Q psy3240         106 LTP------D-T-----HHLINRARLESMKPGAILINTS-RGQ  135 (274)
Q Consensus       106 lt~------~-T-----~~li~~~~l~~mk~gailINv~-RG~  135 (274)
                      -.+      . -     ...++++.++..+++++|..+. ||.
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~  270 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD  270 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence            100      0 1     1345778888899999988764 554

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.49  E-value=0.06  Score=50.24  Aligned_cols=88  Identities=22%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             EEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChhHhhc---------C-Ccc--cCHHHHhcccCEEEEcCCCCcc-
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADKR---------G-AEH--TNIDDLCKQSDFIIITSALTPD-  109 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~~---------g-~~~--~sl~ell~~aDvVil~lPlt~~-  109 (274)
                      |+|||.|.+|..+|..+...|  .+.+++|.+.........         . ...  .+-.+.++.||+|+++...... 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            589999999999999998777  356777765543321111         0 011  1214688999999999864221 


Q ss_pred             --cHH--------hcc--HHHHhcCCCCcEEEEcC
Q psy3240         110 --THH--------LIN--RARLESMKPGAILINTS  132 (274)
Q Consensus       110 --T~~--------li~--~~~l~~mk~gailINv~  132 (274)
                        +|.        ++.  .+.+..-.|.+++|+++
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence              221        111  12334445889999998

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.45  E-value=0.13  Score=49.79  Aligned_cols=107  Identities=12%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H----h--hcCCccc---CHHHHhcccCEEEEcCCCCcccHH-
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A----D--KRGAEHT---NIDDLCKQSDFIIITSALTPDTHH-  112 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~--~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~-  112 (274)
                      ++.|||+|.+|.++|+.|+..|.++.+.|....... .    .  ..|+...   + .+.+..+|+|+..--..+...- 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            478999999999999999999998888775543211 1    1  2365432   3 4566789988775433222221 


Q ss_pred             ---------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 ---------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 ---------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                               ++.. +.+.. ++...+-|--+.|+.--..-+...|+..|.
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  129 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL  129 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence                     2222 23322 333455566667998888888887887664

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.44  E-value=0.076  Score=51.77  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--H-hh--cCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-DK--RGAEHT---NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T  110 (274)
                      ++.++++.|+|.|.+|.++|+.|...|.++++++.......  . ..  .|+...   ..++.+..+|+|+..--..+..
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~   81 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ   81 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence            46789999999999999999999999998777775443221  1 11  255432   1234556799988865443332


Q ss_pred             HHh----------cc-HHHHhc-CC---CCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         111 HHL----------IN-RARLES-MK---PGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       111 ~~l----------i~-~~~l~~-mk---~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      .-+          +. .+.+.. ++   ...+-|--+-|+.--..-+...|+..|.
T Consensus        82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            222          11 223333 32   2344455556888777777777877654

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=95.43  E-value=0.063  Score=49.81  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             HHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240          54 GLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA  126 (274)
Q Consensus        54 G~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga  126 (274)
                      |..||-.+...|..++..++......      ....|++.+ +-.+.++.+.+.++-+|....|.++. ++.++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            67888888889998888876654322      235688776 56688999999999999998998876 57899999999


Q ss_pred             EEEEcCCCchh
Q psy3240         127 ILINTSRGQLV  137 (274)
Q Consensus       127 ilINv~RG~iV  137 (274)
                      ++.|+.+.+.+
T Consensus       112 VicnTCT~sp~  122 (340)
T COG4007         112 VICNTCTVSPV  122 (340)
T ss_pred             EecccccCchh
Confidence            99999987765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.062  Score=53.15  Aligned_cols=111  Identities=14%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh--cCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK--RGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +.||+|+|+|+|.-|.+.|+.|+..|++++++|.+.....  ..+  .+....   ...+.+.++|+|+..--..+...-
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999998888875543211  111  122221   224566789988875432222211


Q ss_pred             ----------hccHHH--Hhc-CC-----CCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         113 ----------LINRAR--LES-MK-----PGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       113 ----------li~~~~--l~~-mk-----~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                                ++++-.  +.. ++     +..+-|--+-|+.--..-+...|+..|
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence                      233322  333 32     134445555688877777777777655

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.36  E-value=0.074  Score=50.87  Aligned_cols=88  Identities=19%  Similarity=0.280  Sum_probs=60.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-HhhcCCccc----C---HHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|++|.|.|.|.+|..+++.++.+|+++++.+....+ .. +++.|+...    +   +.+.....|+|+-++.....  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~--  255 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA--  255 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence            5899999999999999999999999977666655433 22 456676432    1   22233347999987753211  


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                        + ...++.++++..++.++-
T Consensus       256 --~-~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        256 --L-LPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             --H-HHHHHhhcCCCEEEEEcc
Confidence              1 245667888889888874

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.34  E-value=0.11  Score=45.33  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc----c--CHHHH-----hcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH----T--NIDDL-----CKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~----~--sl~el-----l~~aDvVil~lPlt  107 (274)
                      ..|++|.|.|.|.+|+.+++.++..|.++++.+++..+.. ....+...    .  +..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            4688999999999999999999999987666655433322 33333321    1  12221     24589999887642


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .     .-...++.|+++..+++++....
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~~~  236 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGTSG  236 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccCCC
Confidence            1     12345677888999998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.33  E-value=0.098  Score=49.29  Aligned_cols=95  Identities=23%  Similarity=0.354  Sum_probs=58.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh----hc---C---Ccc-cCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD----KR---G---AEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~----~~---g---~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ..||+|||.|.+|..+|..|...|.  +.+++|.+.....  +.    ..   .   +.. .+.+ .++.||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence            3589999999999999998875554  4677776554332  11    11   1   111 2455 48999999996543


Q ss_pred             C--c-ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         107 T--P-DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       107 t--~-~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                      .  + .+|. ++  |.       +.+..-.|.+++|+++  .++|.
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~  125 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDI  125 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHH
Confidence            1  1 2442 22  11       2344457889999998  44443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.32  E-value=0.07  Score=51.70  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--CCcc-----cCHH----HHhcccCEEEEcCCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--GAEH-----TNID----DLCKQSDFIIITSAL  106 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--g~~~-----~sl~----ell~~aDvVil~lPl  106 (274)
                      .+..+++.|+|+|.+|+.+++.|...|..+++++....... ..+.  +...     .+.+    .-+.++|.|+++++.
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            45679999999999999999999999998888876544322 2221  3321     1222    235689999998886


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ..  .+++-......+.+..+++-+.
T Consensus       308 ~~--~n~~~~~~~~~~~~~~ii~~~~  331 (453)
T PRK09496        308 DE--ANILSSLLAKRLGAKKVIALVN  331 (453)
T ss_pred             cH--HHHHHHHHHHHhCCCeEEEEEC
Confidence            43  3344333445555555655443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.32  E-value=0.1  Score=49.00  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVil~l  104 (274)
                      .+.|.+|+++|= +++.++++..+..+|+++.+..+..-...          +...|..   ..+++++++.+|+|..-.
T Consensus       145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~  224 (304)
T TIGR00658       145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV  224 (304)
T ss_pred             CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            489999999995 78999999999999997777665543321          1223432   248999999999999843


Q ss_pred             --CCCc-----c-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         105 --ALTP-----D-----THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       105 --Plt~-----~-----T~~li~~~~l~~mk~gailINv~  132 (274)
                        ....     +     ....++++.++.+|+++++.-+.
T Consensus       225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence              1110     0     11246888999999999998875

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.26  E-value=0.018  Score=47.93  Aligned_cols=94  Identities=24%  Similarity=0.347  Sum_probs=56.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh-------cCC--c-ccCHHHHhcccCEEEEcCCC-
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK-------RGA--E-HTNIDDLCKQSDFIIITSAL-  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~-------~g~--~-~~sl~ell~~aDvVil~lPl-  106 (274)
                      .||+|||. |.+|+.+|..|...+  -+.+.+|.......  +.+       ...  . .....+.+++||+|+++.-. 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            48999999 999999999987544  45667776643322  111       011  1 12567788999999998843 


Q ss_pred             -Cc-ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q psy3240         107 -TP-DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       107 -t~-~T~~-li--~~-------~~l~~mk~gailINv~RG~iVd  138 (274)
                       .+ +++. ++  |.       +.+.+..|.++++.++  .++|
T Consensus        81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd  122 (141)
T PF00056_consen   81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD  122 (141)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred             ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence             22 2221 22  11       1233345778888884  4455

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.26  E-value=0.045  Score=47.12  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             EEEEEccChHHHHHHHHHccCCCe-EEEEeCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS   75 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~   75 (274)
                      +|+|||+|.+|..+|+.|...|.. ..++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999988885 45566543

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.25  E-value=0.04  Score=52.78  Aligned_cols=83  Identities=24%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCCh-------------------h-H-h---hc--CCc----
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKP-------------------E-A-D---KR--GAE----   86 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~-------------------~-a-~---~~--g~~----   86 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+ ++|...-..                   + + .   +.  .+.    
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            46999999999999999999999998888554 444332110                   0 0 0   00  111    


Q ss_pred             --c---cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          87 --H---TNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        87 --~---~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                        .   .+..++++.+|+|+.++- +..++.+++....+.
T Consensus       104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~  142 (355)
T PRK05597        104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL  142 (355)
T ss_pred             EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence              1   124568899999999885 467777777654443

>PRK08328 hypothetical protein; Provisional

Probab=95.24  E-value=0.073  Score=47.92  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r   74 (274)
                      ..|++++|.|+|+|.+|..+|+.|...|...+ ++|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999998654 44433

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.22  E-value=0.066  Score=48.37  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc--CH-HHHhcccCEEEEcCCCCcccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT--NI-DDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~--sl-~ell~~aDvVil~lPlt~~T~  111 (274)
                      -+++|++|.|||-|.++..=++.|..+|+++.++.+......   +....+.+.  +. .+-+..+++|+.++...+   
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~---   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK---   97 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH---
Confidence            468899999999999999999999999998777776554322   111122221  11 234577888888876432   


Q ss_pred             HhccHHHHhcCCCCcEEEEc
Q psy3240         112 HLINRARLESMKPGAILINT  131 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv  131 (274)
                        +|.......+.-.+++|+
T Consensus        98 --vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         98 --LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             --HHHHHHHHHHHcCCeEEE
Confidence              333333334433345554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.22  E-value=0.13  Score=47.81  Aligned_cols=107  Identities=19%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccC-HHHHhcccCEEEEcCCCCcccH---------
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN-IDDLCKQSDFIIITSALTPDTH---------  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~s-l~ell~~aDvVil~lPlt~~T~---------  111 (274)
                      |++++|||--.=-..+++.|...|+++.+|--......  -.|+...+ .++.++++|+|++-+|.+....         
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~   78 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE   78 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence            68999999888889999999999998766642211110  12555544 4556899999999999665421         


Q ss_pred             -HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         112 -HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       112 -~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       -.++++.+++|+++++ +-+|.    +..++-+..+++|+..+|
T Consensus        79 ~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~~  118 (287)
T TIGR02853        79 KVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLIE  118 (287)
T ss_pred             CccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEEE
Confidence             1246789999997654 44553    444444466678888885

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.21  E-value=0.042  Score=52.88  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r   74 (274)
                      .|++++|.|+|+|.+|..+|+.|...|...+ ++|+.
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5899999999999999999999999998544 44443

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.21  E-value=0.053  Score=51.39  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCe---EEEEeCCCCChh-HhhcCC--cccCHH-HHhcccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVS---KFLYTSRSKKPE-ADKRGA--EHTNID-DLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~---vv~~~~r~~~~~-a~~~g~--~~~sl~-ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +++|+|+| .|.+|+.+++.|...+..   .....++..... ..-.+.  ...+++ +.++.+|+|++++|.. .++.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence            46899999 599999999999885543   233333322111 111111  122222 3457899999999853 33333


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q psy3240         114 INRARLESMKPGAILINTSR  133 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~R  133 (274)
                      .. +.   ++.|+.+||.|.
T Consensus        80 ~~-~~---~~~G~~VIDlS~   95 (334)
T PRK14874         80 AP-KA---AAAGAVVIDNSS   95 (334)
T ss_pred             HH-HH---HhCCCEEEECCc
Confidence            21 22   357889999874

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.21  E-value=0.085  Score=50.30  Aligned_cols=94  Identities=17%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCcc---cCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAEH---TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~~---~sl~ell~~aDvVil~  103 (274)
                      .+.|++|++||-+  ++.++++..+..+|+++.+..+..-.+.          +...|...   .+++++++.+|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4899999999987  8999999999999997766665443221          12235432   3899999999999985


Q ss_pred             CCCC---c----c-----cHHhccHHHHh-cCCCCcEEEEcC
Q psy3240         104 SALT---P----D-----THHLINRARLE-SMKPGAILINTS  132 (274)
Q Consensus       104 lPlt---~----~-----T~~li~~~~l~-~mk~gailINv~  132 (274)
                      +=..   +    +     ...-++++.++ .+|++++|.-+.
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            3110   0    1     11235777888 478898888765

>PRK05086 malate dehydrogenase; Provisional

Probab=95.20  E-value=0.19  Score=47.35  Aligned_cols=91  Identities=18%  Similarity=0.277  Sum_probs=54.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHc---cCCCeEEEEeCCCCCh----hHhhcC--C--c---ccCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLI---PYKVSKFLYTSRSKKP----EADKRG--A--E---HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~---~~G~~vv~~~~r~~~~----~a~~~g--~--~---~~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||. |.||+.+|..++   ..+...+.++.+....    +.....  .  .   ..++.+.++.+|+|++++-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   3444456666543221    111111  1  1   125567889999999988642


Q ss_pred             cc---cHH-hcc------HH---HHhcCCCCcEEEEcCC
Q psy3240         108 PD---THH-LIN------RA---RLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~---T~~-li~------~~---~l~~mk~gailINv~R  133 (274)
                      ..   ++. ++.      .+   .+..-.+.+++++++-
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            21   111 121      12   3333467889999863

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.17  E-value=0.051  Score=52.45  Aligned_cols=82  Identities=22%  Similarity=0.265  Sum_probs=55.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCCCC-------------------hh-H----hhc--CCc--c-
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRSKK-------------------PE-A----DKR--GAE--H-   87 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~~~-------------------~~-a----~~~--g~~--~-   87 (274)
                      ..|++++|.|||+|.+|..+|+.|...|... .++|...-.                   .+ +    .+.  .+.  . 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            5799999999999999999999999988744 445443110                   00 0    011  111  1 


Q ss_pred             ------cCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          88 ------TNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        88 ------~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                            .+.+++++++|+|+.|+- +.+++.++++....
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                  135578899999988875 56788888765443

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.17  E-value=0.11  Score=51.13  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccC-CCeEEEEeCCCCCh-h-----HhhcCCc--c-cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E-----ADKRGAE--H-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~-----a~~~g~~--~-~sl~ell~~aDvVil~lP  105 (274)
                      .+.|+||+++|-   +++..+++..+..+ |+++++..+..-.. .     +.+.|..  . .+++|+++.+|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            589999999998   59999999998776 99777766654322 1     1223433  2 489999999999998542


Q ss_pred             CCcc----------cHHhccHHHHhc-CCCCcEEEEcC
Q psy3240         106 LTPD----------THHLINRARLES-MKPGAILINTS  132 (274)
Q Consensus       106 lt~~----------T~~li~~~~l~~-mk~gailINv~  132 (274)
                      -.+.          ....++++.++. .|++++|.-+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            1111          012357888988 89999998753

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.16  E-value=0.12  Score=47.73  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lP  105 (274)
                      ++|.|.| .|.+|+.+++.|...|.++++..++..+.. ....+++.        .++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4799999 599999999999999998777765543222 12234322        145677899999988754

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.13  E-value=0.12  Score=49.09  Aligned_cols=108  Identities=18%  Similarity=0.314  Sum_probs=60.2

Q ss_pred             EEEEEccChHHHHHHHHHcc--------CCCeEEEEeCCCCC----h-----hH---hhcC----C--cccCHHHHh-cc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIP--------YKVSKFLYTSRSKK----P-----EA---DKRG----A--EHTNIDDLC-KQ   96 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~--------~G~~vv~~~~r~~~----~-----~a---~~~g----~--~~~sl~ell-~~   96 (274)
                      +|+|+|+|++|+.+++.|..        .+.+++...++...    .     ..   .+.+    .  ...++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999999865        45665554443321    0     00   1101    1  111456654 46


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhe
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVI  152 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~  152 (274)
                      +|+|+=|+|....-.... .-..+.|+.|.-+|-.+-+.+. .-+.|.+..++.|..
T Consensus        82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            899999998542211111 1123345667777766655554 344555544444443

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.12  E-value=0.095  Score=48.48  Aligned_cols=89  Identities=26%  Similarity=0.303  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C-----HH---HHhc--ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N-----ID---DLCK--QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s-----l~---ell~--~aDvVil~lPl  106 (274)
                      ..|.+|.|+|.|.+|..+++.++.+|++ +++.+.+..+.. +.+.|+... +     .+   ++..  ..|+|+-++..
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~  241 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN  241 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC
Confidence            3489999999999999999999999997 555444333333 555665321 1     11   2222  47888887653


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..    .+ ...++.++++..++.++.
T Consensus       242 ~~----~~-~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         242 TA----AR-RLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             HH----HH-HHHHHHhhcCCEEEEEcC
Confidence            21    11 345667888888888765

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.10  E-value=0.097  Score=49.76  Aligned_cols=89  Identities=27%  Similarity=0.406  Sum_probs=60.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-Hhh-cCCccc-CH-H--------HHh--cccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADK-RGAEHT-NI-D--------DLC--KQSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~-~g~~~~-sl-~--------ell--~~aDvVil~lP  105 (274)
                      .+.+|.|+|.|.||...++.++.+|+..++..++.+ +.+ +++ .+.... +. +        ++-  ..+|+++-|+.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            334999999999999999999999987766655544 333 555 444432 11 1        222  24899999997


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      . +.   .+ .+.++.++++..++.+|-.
T Consensus       248 ~-~~---~~-~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 S-PP---AL-DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             C-HH---HH-HHHHHHhcCCCEEEEEecc
Confidence            2 22   12 3567778999999888753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.10  E-value=0.074  Score=46.49  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +++++++.|+|. |.||+.+++.|...|+++++.+++..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999995 89999999999999998777766543

>KOG2741|consensus

Probab=95.10  E-value=0.23  Score=47.59  Aligned_cols=112  Identities=16%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             CEEEEEccChHHHHHHHHHcc---CCCeEEEEeCCCCChh---HhhcCC--cc--cCHHHHhccc--CEEEEcCCCCccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP---YKVSKFLYTSRSKKPE---ADKRGA--EH--TNIDDLCKQS--DFIIITSALTPDT  110 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~---~G~~vv~~~~r~~~~~---a~~~g~--~~--~sl~ell~~a--DvVil~lPlt~~T  110 (274)
                      -++||+|+|.|++..++.|..   .+.+++...+++....   +...++  ..  -+.+|+++..  |+|.+..|.....
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~   86 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY   86 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence            479999999999999999974   3666666666544332   555666  22  3899999865  9999988864433


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCc-hhcHHHHHhhhhhhhheeehhhc
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQ-LVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~-iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      +-..  ..+..  .-.+|+.---.- +-+.+.++++-+++|+.++|-.-
T Consensus        87 evv~--l~l~~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~  131 (351)
T KOG2741|consen   87 EVVM--LALNK--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLW  131 (351)
T ss_pred             HHHH--HHHHc--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeee
Confidence            3222  23332  233666544322 23666888888888888877443

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.085  Score=51.28  Aligned_cols=112  Identities=18%  Similarity=0.177  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      ++.+++|.|+|+|..|.+.++.|+..|.++.++|.......  ..+.|+...   ...+.++..|+|+. -|.-+.....
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~   81 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPS   81 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHH
Confidence            56789999999999999999999999998777775443321  122355432   22345677886655 4433322221


Q ss_pred             -----------ccH-HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         114 -----------INR-ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       114 -----------i~~-~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                                 +.. +.+..+ +...+-|--+.|+.--..-|...|+..|.
T Consensus        82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  132 (438)
T PRK03806         82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW  132 (438)
T ss_pred             HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence                       221 233332 22234444456887777777777776553

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.08  E-value=0.068  Score=50.02  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----C-----HHHHhc------ccC----EE
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----N-----IDDLCK------QSD----FI  100 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----s-----l~ell~------~aD----vV  100 (274)
                      .|.+|.|.|.|.||..+++.++..|.++++.+.+..+.. +++.|+...    +     +.+.+.      ..|    +|
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v  245 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI  245 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence            489999999999999999999999997655554443333 555665321    1     111121      133    66


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +-++.....    + ...++.++++..++.++.
T Consensus       246 ~d~~g~~~~----~-~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       246 FECSGSKPG----Q-ESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             EECCCChHH----H-HHHHHHHhcCCeEEEECc
Confidence            665543211    1 234666788888888775

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.08  E-value=0.15  Score=48.64  Aligned_cols=94  Identities=18%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVil~  103 (274)
                      .+.|++|++||=+  ++.++++..+..+|+++.+..+..-.+.          +...|..  . .+++++++.+|+|..-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            5899999999974  8899999999999997777666532211          1234532  2 3899999999999994


Q ss_pred             CCCC--c------c-----cHHhccHHHHhcCC-CCcEEEEcC
Q psy3240         104 SALT--P------D-----THHLINRARLESMK-PGAILINTS  132 (274)
Q Consensus       104 lPlt--~------~-----T~~li~~~~l~~mk-~gailINv~  132 (274)
                      .=..  .      +     ....++++.++.++ |+++|.-+.
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            2110  0      0     11235778888886 588888775

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.08  E-value=0.08  Score=51.92  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=41.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC----------CCeEEEEeCCCCCh-h-HhhcCCcc-cCHHHHhc--ccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY----------KVSKFLYTSRSKKP-E-ADKRGAEH-TNIDDLCK--QSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~----------G~~vv~~~~r~~~~-~-a~~~g~~~-~sl~ell~--~aDvVil~lPlt  107 (274)
                      .+|||+|+|.||+.+++.|...          +.+++...++.... . ....+... .++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            5799999999999999887432          34444443333221 1 11112222 37899985  479999988753

>PLN02602 lactate dehydrogenase

Probab=95.07  E-value=0.12  Score=49.69  Aligned_cols=95  Identities=22%  Similarity=0.357  Sum_probs=58.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c-----C-Ccc---cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R-----G-AEH---TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~-----g-~~~---~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.+|..+|-.|...+.  +.+.+|.......  +.+  .     + ...   .+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999998875554  4667776554332  111  1     1 111   133 4589999999985432


Q ss_pred             c---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         108 P---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       108 ~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                      .   .+|- ++  |.       +.+....|.+++|+++  .++|.-
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~  160 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVL  160 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHH
Confidence            1   2332 22  11       2344456889999998  444433

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.06  E-value=0.029  Score=53.66  Aligned_cols=83  Identities=20%  Similarity=0.306  Sum_probs=48.7

Q ss_pred             EEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-H-hh---cCCcc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-A-DK---RGAEH--------TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a-~~---~g~~~--------~sl~ell~~aDvVil~lPlt~~  109 (274)
                      |+|+|.|.+|+.+++.|...+-  ++++.+++..+.. . ..   ..+..        .++.++++++|+|+.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            7899999999999999987664  4556665544433 1 11   11111        14678999999999999854 2


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         110 THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~  132 (274)
                      ...++ +.   .++.|.-.||++
T Consensus        80 ~~~v~-~~---~i~~g~~yvD~~   98 (386)
T PF03435_consen   80 GEPVA-RA---CIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHH-HH---HHHHT-EEEESS
T ss_pred             hHHHH-HH---HHHhCCCeeccc
Confidence            22222 11   134567778844

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.05  E-value=0.067  Score=52.22  Aligned_cols=70  Identities=6%  Similarity=0.097  Sum_probs=52.4

Q ss_pred             CCCCCCCEEEEEcc----------ChHHHHHHHHHccCC-CeEEEEeCCCCChhH-hhcCCcccCHHHHhcccCEEEEcC
Q psy3240          37 GPALQNSTVGIVGC----------GRIGLSVLEKLIPYK-VSKFLYTSRSKKPEA-DKRGAEHTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        37 g~~L~gktVGIIGl----------G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~a-~~~g~~~~sl~ell~~aDvVil~l  104 (274)
                      +.++.|++|+|+|+          ..-...+++.|+..| +++.+||+....... ........+++|.++.||+|++++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            46789999999998          457789999999996 987888876432211 111223458999999999999988


Q ss_pred             CC
Q psy3240         105 AL  106 (274)
Q Consensus       105 Pl  106 (274)
                      +-
T Consensus       395 ~~  396 (415)
T PRK11064        395 DH  396 (415)
T ss_pred             CC
Confidence            75

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.04  E-value=0.086  Score=50.36  Aligned_cols=95  Identities=21%  Similarity=0.268  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVil  102 (274)
                      ..+.|++|++||-+  ++..+++..+..+|+++.+..+..-.+.          +...|..  . .+++++++.+|+|..
T Consensus       152 ~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt  231 (336)
T PRK03515        152 KAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYT  231 (336)
T ss_pred             CCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEe
Confidence            36999999999975  6899999999999997777665443221          1223432  2 389999999999998


Q ss_pred             cCCCCc----c---------cHHhccHHHHhcC-CCCcEEEEcC
Q psy3240         103 TSALTP----D---------THHLINRARLESM-KPGAILINTS  132 (274)
Q Consensus       103 ~lPlt~----~---------T~~li~~~~l~~m-k~gailINv~  132 (274)
                      -+=...    .         ....++++.++.. |++++|.-+.
T Consensus       232 d~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        232 DVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             cCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            521110    0         1123567777774 7888888775

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.03  E-value=0.077  Score=50.17  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=57.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|.+|.|.|.|.+|..+++.++..|++ +++.+....+.. +++.|+...      ++.+.+.     ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            588999999999999999999999994 555544443333 566666421      1212111     378888877532


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.    + ...++.++++..++.++-
T Consensus       271 ~~----~-~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 PA----L-ETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             HH----H-HHHHHHHhcCCEEEEEcc
Confidence            11    1 244666788888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.01  E-value=0.13  Score=48.83  Aligned_cols=97  Identities=18%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hh--hcC-------Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--AD--KRG-------AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~--~~g-------~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||. |.+|..+|..|...|.       +.+.+|.....  ..  +.  ...       +.. .+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999998875444       45667753322  11  11  111       111 2456789999999


Q ss_pred             EEcCCCCc---ccHH-hc--cHH-------HHhcCC-CCcEEEEcCCCchhcHHH
Q psy3240         101 IITSALTP---DTHH-LI--NRA-------RLESMK-PGAILINTSRGQLVDQEA  141 (274)
Q Consensus       101 il~lPlt~---~T~~-li--~~~-------~l~~mk-~gailINv~RG~iVde~a  141 (274)
                      +++.-...   +||. ++  |.+       .+..-. |.+++|.++  .++|.-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA  135 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence            99875421   1322 11  111       233334 588999996  6666554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.00  E-value=0.11  Score=49.02  Aligned_cols=94  Identities=21%  Similarity=0.261  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCC-eEEEEeCCCCChhHh-hcCCcc-cCHHHHhcccCEEEEcCCCCc----
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKV-SKFLYTSRSKKPEAD-KRGAEH-TNIDDLCKQSDFIIITSALTP----  108 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~-~~g~~~-~sl~ell~~aDvVil~lPlt~----  108 (274)
                      .+.|.+|+++|=   +++..+++..+..+|+ ++.+..+..-.+... ...+.. .+++++++.+|+|...-=..+    
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~  233 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDN  233 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccc
Confidence            488999999997   6999999999999998 777776654332211 112333 489999999999988322111    


Q ss_pred             -cc------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         109 -DT------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       109 -~T------~~li~~~~l~~mk~gailINv~  132 (274)
                       ..      ...++.+.++.+|++++|.-+.
T Consensus       234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL  264 (310)
T PRK13814        234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG  264 (310)
T ss_pred             hhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence             00      1335677888888888888775

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.00  E-value=0.077  Score=46.63  Aligned_cols=38  Identities=13%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~   75 (274)
                      +.|++++|.|+|+|.+|..+|+.|...|... .++|+..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            5699999999999999999999999989864 4555543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.99  E-value=0.046  Score=56.33  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=29.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEE
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY   71 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~   71 (274)
                      ..|++.+|+|||+|.+|..+|+.|.+.|...+..
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl  367 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF  367 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            4577999999999999999999999999866543

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.96  E-value=0.13  Score=48.70  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=51.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCC-CeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYK-VSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      -+|+|+|. |-.|..+.++|...- ++......+..        ....+.+++++++|++++++|.. .+..+.. . + 
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~-~-   69 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS-L-V-   69 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH-H-H-
Confidence            37999995 999999999998653 43333332221        12235667888999999999964 3333331 1 2 


Q ss_pred             cCCCCcEEEEcC
Q psy3240         121 SMKPGAILINTS  132 (274)
Q Consensus       121 ~mk~gailINv~  132 (274)
                       .+.|+.+||.|
T Consensus        70 -~~~g~~VIDlS   80 (310)
T TIGR01851        70 -DNPNTCIIDAS   80 (310)
T ss_pred             -HhCCCEEEECC
Confidence             24689999998

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.95  E-value=0.064  Score=51.29  Aligned_cols=87  Identities=20%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCC---eEEEE-eCCCCChhHhhcCCc--ccCHH-HHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKV---SKFLY-TSRSKKPEADKRGAE--HTNID-DLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~---~vv~~-~~r~~~~~a~~~g~~--~~sl~-ell~~aDvVil~lPlt~~T~~  112 (274)
                      ...+|+|+| .|.+|+.+.+.|...+.   +.... ..++........+..  ..+++ +.+..+|+|++++|.. .+..
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence            457899999 59999999999987443   22222 222222111112221  11222 4558899999999964 3333


Q ss_pred             hccHHHHhcCCCCcEEEEcC
Q psy3240         113 LINRARLESMKPGAILINTS  132 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~  132 (274)
                      +.. +.   .+.|+.+||.|
T Consensus        85 ~~~-~~---~~~g~~VIDlS  100 (344)
T PLN02383         85 FGP-IA---VDKGAVVVDNS  100 (344)
T ss_pred             HHH-HH---HhCCCEEEECC
Confidence            321 11   25789999998

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.94  E-value=0.068  Score=52.78  Aligned_cols=110  Identities=17%  Similarity=0.271  Sum_probs=64.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-CCcc--cCHHHHhcccCEEEEcCCCCcccHH----
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-GAEH--TNIDDLCKQSDFIIITSALTPDTHH----  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-g~~~--~sl~ell~~aDvVil~lPlt~~T~~----  112 (274)
                      .|++|+|+|+|.-|.++|+.|+. |++++++|.+..... ..+. ....  ....+.+.++|+|+..--..+...-    
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            57899999999999999999995 998778775433221 1111 1111  1123456789988775322222211    


Q ss_pred             ------hccH-HHH-hcCCCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 ------LINR-ARL-ESMKPG-AILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 ------li~~-~~l-~~mk~g-ailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                            ++++ +++ ..+++. .+-|--+-|+.-...-+...|+..|.
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  131 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGL  131 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence                  2222 232 233332 33344456888777777777877554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.93  E-value=0.47  Score=43.73  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCe
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS   67 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~   67 (274)
                      .|+.|...+|.|+|.|.-|-.+|+.|...+.+
T Consensus        19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~   50 (254)
T cd00762          19 TKKKISEHKVLFNGAGAAALGIANLIVXLXVK   50 (254)
T ss_pred             hCCChhhcEEEEECcCHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999876653

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07411 hypothetical protein; Validated

Probab=94.90  E-value=0.068  Score=51.87  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh---------Hhhc-----------------CCc----
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE---------ADKR-----------------GAE----   86 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~---------a~~~-----------------g~~----   86 (274)
                      ..|+.++|+|||+|.+|..+|+.|...|...+ ++|...-...         ....                 .+.    
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46999999999999999999999998887554 4443221100         0000                 110    


Q ss_pred             --cc---CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCC
Q psy3240          87 --HT---NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKP  124 (274)
Q Consensus        87 --~~---sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~  124 (274)
                        ..   +..+++.++|+|+.|+- +.+++.+++....+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence              11   34567899999999875 557888888766554444

>PRK10206 putative oxidoreductase; Provisional

Probab=94.90  E-value=0.069  Score=50.67  Aligned_cols=66  Identities=14%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             EEEEEccChHHHH-HHHHH-cc-CCCeEEEEeCCCCChh--HhhcC-Ccc-cCHHHHhc--ccCEEEEcCCCCcc
Q psy3240          44 TVGIVGCGRIGLS-VLEKL-IP-YKVSKFLYTSRSKKPE--ADKRG-AEH-TNIDDLCK--QSDFIIITSALTPD  109 (274)
Q Consensus        44 tVGIIGlG~IG~~-iA~~L-~~-~G~~vv~~~~r~~~~~--a~~~g-~~~-~sl~ell~--~aDvVil~lPlt~~  109 (274)
                      ++||||+|.|++. .+..+ .. -+++++.+.++..+..  +...+ ... .+++++++  +.|+|++++|....
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998863 34444 32 3566665555543322  33343 333 48999996  57999999996433

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.90  E-value=0.078  Score=51.68  Aligned_cols=87  Identities=17%  Similarity=0.323  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhh-cCCccc-CHHHHhcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADK-RGAEHT-NIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~-~g~~~~-sl~ell~~aDvVil~lPlt  107 (274)
                      |+||+|||+|+-          .-...++++|+..|+++++|++-........ .++... +++++++.||+++++..- 
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence            999999999985          4567899999999999999987554333221 134444 899999999999997652 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEE
Q psy3240         108 PDTHHLINRARLESMKPGAILIN  130 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailIN  130 (274)
                      ++-+. ++-+.+ .|| +..+++
T Consensus       387 ~ef~~-~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         387 DEFRD-LDFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhc-cChhhh-hcc-CCEEEe
Confidence            22222 233333 454 455555

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.88  E-value=0.14  Score=47.95  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=58.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc-CC-CeEEEEeCCCCChh-HhhcCCcccCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP-YK-VSKFLYTSRSKKPE-ADKRGAEHTNIDDLCK--QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~-~G-~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~  115 (274)
                      .|.+|.|+|.|.||...++.++. +| .++++.+.+..+.+ ++..+... ..+++.+  ..|+|+-++... .+...+ 
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~-  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI-  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH-
Confidence            58999999999999999998875 55 45556665544444 44444332 1222222  379999888631 122223 


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      ...++.++++..++.++-
T Consensus       240 ~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         240 NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHHhCcCCcEEEEEee
Confidence            356778999999988764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.78  E-value=0.12  Score=48.95  Aligned_cols=77  Identities=22%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      .+|+||| .|..|+.+.+.|.....-.+.+...+...     ..  .+.++.++++|++++++|.. ...     +..++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-----~~--~~~~~~~~~~DvvFlalp~~-~s~-----~~~~~   69 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-----DA--AARRELLNAADVAILCLPDD-AAR-----EAVAL   69 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-----cc--cCchhhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence            5899999 69999999999986543223333222111     01  23455667899999999963 222     22222


Q ss_pred             C-CCCcEEEEcC
Q psy3240         122 M-KPGAILINTS  132 (274)
Q Consensus       122 m-k~gailINv~  132 (274)
                      + +.|+.+||.|
T Consensus        70 ~~~~g~~VIDlS   81 (313)
T PRK11863         70 IDNPATRVIDAS   81 (313)
T ss_pred             HHhCCCEEEECC
Confidence            2 5689999998

>PRK04148 hypothetical protein; Provisional

Probab=94.78  E-value=0.064  Score=44.81  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .+++++..||+| -|..+|+.|+..|.++++.|.+....+ +...+....      .--++.+.+|+|...=|..+-.+.
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~   93 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPF   93 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHH
Confidence            356889999999 999999999999998888887665433 444444321      223567888888888775444444


Q ss_pred             hc
Q psy3240         113 LI  114 (274)
Q Consensus       113 li  114 (274)
                      ++
T Consensus        94 ~~   95 (134)
T PRK04148         94 IL   95 (134)
T ss_pred             HH
Confidence            44

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.75  E-value=0.091  Score=45.71  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +++|+++.|.|. |.||+.+++.|...|+++++.+++.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999996 8899999999999999777766544

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.74  E-value=0.12  Score=48.50  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=57.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHH----Hhc--ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDD----LCK--QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~e----ll~--~aDvVil~lPl  106 (274)
                      .|++|.|.|.|.+|...++.++..|++ +++.++...+.+ +++.|+...      +..+    +..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            589999999999999999999999986 444444433333 556665321      2212    221  37888887753


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +.   .+ ...+..++++..+|.+|.
T Consensus       256 -~~---~~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PE---TY-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HH---HH-HHHHHHhccCCEEEEECC
Confidence             11   12 234667788888888874

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.71  E-value=0.12  Score=52.72  Aligned_cols=69  Identities=13%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHh--hcCC--cccC---HHHHhcccCEEEEcCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD--KRGA--EHTN---IDDLCKQSDFIIITSAL  106 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~--~~g~--~~~s---l~ell~~aDvVil~lPl  106 (274)
                      .+...|+|||||-|..|+.+++.++.+|++++++++....+...  ...+  .+.+   +.++.+++|+|......
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~   93 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH   93 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence            35889999999999999999999999999888888765433311  1111  1223   55667889999876554

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.70  E-value=0.17  Score=47.86  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCC-------CeEEEEeCCCCC--hhHhhc-----------CCc-ccCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYK-------VSKFLYTSRSKK--PEADKR-----------GAE-HTNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G-------~~vv~~~~r~~~--~~a~~~-----------g~~-~~sl~ell~~aDvV  100 (274)
                      .+|+|+|. |.+|+.+|..|...+       .+++++|.....  ......           ... ..++.+.++.||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            36999999 999999999997644       356777754322  111100           011 23567889999999


Q ss_pred             EEcCCCCc---ccHH-hc--cHH-------HHhcC-CCCcEEEEcCCCchhcHH
Q psy3240         101 IITSALTP---DTHH-LI--NRA-------RLESM-KPGAILINTSRGQLVDQE  140 (274)
Q Consensus       101 il~lPlt~---~T~~-li--~~~-------~l~~m-k~gailINv~RG~iVde~  140 (274)
                      +.+.-...   .++. ++  |.+       .+... +|++++|.++  .++|.-
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~  134 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN  134 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence            98765422   2221 22  111       23333 5788999887  455544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.69  E-value=0.22  Score=47.57  Aligned_cols=95  Identities=20%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCCh--h--------HhhcCCcc---cCHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKP--E--------ADKRGAEH---TNIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~--~--------a~~~g~~~---~sl~ell~~aDvVil  102 (274)
                      ..+.|++|++||=+  ++.++++..+..+|+++.+..+..-.+  .        +...|...   .+++++++.+|+|..
T Consensus       152 ~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt  231 (334)
T PRK12562        152 KAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYT  231 (334)
T ss_pred             CCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEE
Confidence            35899999999975  789999999999999777766654222  1        12234332   489999999999998


Q ss_pred             cCCC----C-c---c-----cHHhccHHHHhcC-CCCcEEEEcC
Q psy3240         103 TSAL----T-P---D-----THHLINRARLESM-KPGAILINTS  132 (274)
Q Consensus       103 ~lPl----t-~---~-----T~~li~~~~l~~m-k~gailINv~  132 (274)
                      -.=.    . +   +     -..-++++.++.. +++++|.-+.
T Consensus       232 ~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        232 DVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             cCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            5410    0 0   0     0123577888875 7889988875

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.67  E-value=0.16  Score=47.85  Aligned_cols=89  Identities=21%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc----C---HHHHhcccCEEEEcCCCCccc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T  110 (274)
                      ..|.+|.|.|.|.+|..+++.++..|+++++...+..+..  .+..|+...    +   +.+.....|+++-++..... 
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-  257 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-  257 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH-
Confidence            4689999999999999999999999997666665443332  234665421    1   22233357999988763221 


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCC
Q psy3240         111 HHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~R  133 (274)
                         + ...++.++++..++.++.
T Consensus       258 ---~-~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ---L-EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---H-HHHHHHhccCCEEEEECC
Confidence               1 345677899999999875

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.67  E-value=0.37  Score=47.00  Aligned_cols=110  Identities=24%  Similarity=0.231  Sum_probs=67.4

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh--cCCccc---CHHHHhcccCEEEEcCCCCcccHH-
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK--RGAEHT---NIDDLCKQSDFIIITSALTPDTHH-  112 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T~~-  112 (274)
                      .-+|+|+|+|.+|.++|+.|+..|.++.++|.......   ..+  .|+...   .-.+.+.++|+|+..--..+...- 
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            45799999999999999999999998888775543221   122  255432   123456789988764322222111 


Q ss_pred             ---------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 ---------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 ---------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                               ++.+ +.+.. ++...+-|--+.|+.--..-+...|+..|.
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  135 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGK  135 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence                     2222 33333 333344455556888777777777877654

>PLN02740 Alcohol dehydrogenase-like

Probab=94.62  E-value=0.14  Score=48.66  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C-------HHHHhc-----ccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N-------IDDLCK-----QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell~-----~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.+|..+++.++.+|++ +++.+.+..+.+ +++.|+... +       +.+.+.     ..|+|+-++
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~  276 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA  276 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence            3589999999999999999999999984 555555444444 556665321 1       222221     378888776


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      -...    .+ ...+..++++ ..++.+|.
T Consensus       277 G~~~----~~-~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        277 GNVE----VL-REAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             CChH----HH-HHHHHhhhcCCCEEEEEcc
Confidence            5321    12 2445556665 66666654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.52  E-value=0.17  Score=46.83  Aligned_cols=89  Identities=24%  Similarity=0.277  Sum_probs=60.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----C--H-HHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----N--I-DDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----s--l-~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .|.++.|.|.|.+|+.+++.++.+|+++++.+++..+.. +.+.|+...    +  . .+.-...|+|+-+++...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            578999999999999999999999996655555443333 444555321    1  1 122345789998887531    


Q ss_pred             hccHHHHhcCCCCcEEEEcCCC
Q psy3240         113 LINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG  134 (274)
                       .-...++.++++..+++++..
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~~  265 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGAP  265 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEecc
Confidence             124557778888888888753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.51  E-value=0.22  Score=48.88  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             CCCCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCCcccCHHHHhcccCEEEEcCC
Q psy3240          37 GPALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGAEHTNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        37 g~~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~~~~sl~ell~~aDvVil~lP  105 (274)
                      |.++.|++|+|+|+          ..-+..+++.|+..|.++.+||+.-..... ...+....+ ...++.||+|++++.
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~  387 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG  387 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence            45789999999999          467899999999999988888876332221 222322111 224678999999887


Q ss_pred             CCcccHHhccHHHHh-cCCCCcEEEEcCCCch
Q psy3240         106 LTPDTHHLINRARLE-SMKPGAILINTSRGQL  136 (274)
Q Consensus       106 lt~~T~~li~~~~l~-~mk~gailINv~RG~i  136 (274)
                      -. +-+. ++.+.+. .|+...++||. |+-+
T Consensus       388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            43 3222 3444443 45545689984 5544

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=94.49  E-value=0.26  Score=47.53  Aligned_cols=94  Identities=14%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEccC--------hHHHHHHHHHccCCCeEEEEeCCCCC--hh--------HhhcCCcc---cCHHHHhccc
Q psy3240          39 ALQNSTVGIVGCG--------RIGLSVLEKLIPYKVSKFLYTSRSKK--PE--------ADKRGAEH---TNIDDLCKQS   97 (274)
Q Consensus        39 ~L~gktVGIIGlG--------~IG~~iA~~L~~~G~~vv~~~~r~~~--~~--------a~~~g~~~---~sl~ell~~a   97 (274)
                      .|+|+||+|+|.|        ++.++++..+..+|+++.+..+..-.  +.        +.+.|...   .+++++++.+
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            4889999999853        45578888899999987777665321  11        12345432   3899999999


Q ss_pred             CEEEEcC----C----------CCcc-----------------cHHhccHHHHhcCC-CCcEEEEcC
Q psy3240          98 DFIIITS----A----------LTPD-----------------THHLINRARLESMK-PGAILINTS  132 (274)
Q Consensus        98 DvVil~l----P----------lt~~-----------------T~~li~~~~l~~mk-~gailINv~  132 (274)
                      |+|..-.    .          ..+.                 ....++++.++.++ ++++|.-+.
T Consensus       247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL  313 (357)
T TIGR03316       247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL  313 (357)
T ss_pred             CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence            9999863    1          0000                 01236888888888 888888774

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PLN02342 ornithine carbamoyltransferase

Probab=94.45  E-value=0.26  Score=47.38  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCC---cc-cCHHHHhcccCEEEEcC---
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGA---EH-TNIDDLCKQSDFIIITS---  104 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~---~~-~sl~ell~~aDvVil~l---  104 (274)
                      .+.|++|+++|= -++.++++..+..+|+++.+..+..-.+.      +...|.   .. .+++++++.+|+|..-.   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            589999999995 57888888889999997777666543221      122332   22 48999999999999863   


Q ss_pred             -CCCcc--------cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         105 -ALTPD--------THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       105 -Plt~~--------T~~li~~~~l~~mk~gailINv~  132 (274)
                       -..+.        ....++++.++.+|++++|.-+.
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence             11111        11346888999999999998875

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.41  E-value=0.11  Score=43.65  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ...|++|++||+   =++++++|+..+.++.+++.+.........+......++++++||+|++.--.  -..+-+ .+.
T Consensus         8 ~~~~~~V~~VG~---f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti-~~i   81 (147)
T PF04016_consen    8 IGPGDKVGMVGY---FQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGST--LVNGTI-DDI   81 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHH--CCTTTH-HHH
T ss_pred             hcCCCEEEEEcC---cHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeee--eecCCH-HHH
Confidence            457999999996   12378888888888888886654322111222334678999999999994321  111112 357


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      |+..++++.++=+|-....-.+.|.+
T Consensus        82 L~~~~~~~~vil~GpS~~~~P~~l~~  107 (147)
T PF04016_consen   82 LELARNAREVILYGPSAPLHPEALFD  107 (147)
T ss_dssp             HHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred             HHhCccCCeEEEEecCchhhHHHHHh
Confidence            78888888888888766665555444

; PDB: 3L5O_B 3NPG_A.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.41  E-value=0.12  Score=49.46  Aligned_cols=86  Identities=16%  Similarity=0.335  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHcc--CCC-eEEEEeCCCCC-hh--HhhcCCcccCHHHH-hcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIP--YKV-SKFLYTSRSKK-PE--ADKRGAEHTNIDDL-CKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~--~G~-~vv~~~~r~~~-~~--a~~~g~~~~sl~el-l~~aDvVil~lPlt~~T~~  112 (274)
                      ++.+|+|||. |..|+.+.+.|..  +-. +...+.++... ..  .........++++. +.++|++++++|.. .   
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~---   78 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-A---   78 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-H---
Confidence            5678999996 9999999999987  443 33333332221 11  11111222245544 37899999999953 2   


Q ss_pred             hccHHHHhcC-CCCcEEEEcC
Q psy3240         113 LINRARLESM-KPGAILINTS  132 (274)
Q Consensus       113 li~~~~l~~m-k~gailINv~  132 (274)
                        ..+..+.+ +.|+.+||.|
T Consensus        79 --s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         79 --SAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             --HHHHHHHHHHCCCEEEECC
Confidence              22333322 5789999998

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.39  Score=46.71  Aligned_cols=106  Identities=15%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHh--cccCEEEEcCCCCcccH------Hhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLC--KQSDFIIITSALTPDTH------HLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell--~~aDvVil~lPlt~~T~------~li  114 (274)
                      ++|.|+|+|..|.++|+.|+ .|.++++.|.........+.|+.... ++.+  .++|+|+..--..+...      .++
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~   78 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI   78 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence            46899999999999999999 99987777744322212233554432 2233  46898766522222211      122


Q ss_pred             cH-HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         115 NR-ARLESMKPGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       115 ~~-~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      .+ +.+..+.+..+-|--+-|+.-..+-+...|+..|
T Consensus        79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g  115 (401)
T PRK03815         79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG  115 (401)
T ss_pred             hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence            22 2333322334555556788888887777788765

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.39  E-value=0.21  Score=46.19  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh---cccCEEEEcCCCCccc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC---KQSDFIIITSALTPDT  110 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell---~~aDvVil~lPlt~~T  110 (274)
                      .|.+|.|.|.|.+|+.+++.++.+|+++++.++...+.. +.+.|+...      ++.+.+   ...|+++-++....  
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--  240 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--  240 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence            578999999999999999999999997666555433333 455565321      222222   34688887553211  


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         111 HHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG  134 (274)
                        . -...+..++++..+++++..
T Consensus       241 --~-~~~~~~~l~~~G~~v~~g~~  261 (333)
T cd08296         241 --A-ISALVGGLAPRGKLLILGAA  261 (333)
T ss_pred             --H-HHHHHHHcccCCEEEEEecC
Confidence              1 23456778888888888653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.38  E-value=0.1  Score=50.55  Aligned_cols=82  Identities=23%  Similarity=0.242  Sum_probs=53.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCCh-----------------h---Hh----hc--CCc----
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKP-----------------E---AD----KR--GAE----   86 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~-----------------~---a~----~~--g~~----   86 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+ ++|...-..                 .   +.    +.  .+.    
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            46899999999999999999999998887544 444322110                 0   00    00  111    


Q ss_pred             --cc---CHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          87 --HT---NIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        87 --~~---sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                        ..   +..++++.+|+|+.|+- +..++.++++-...
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~  155 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVL  155 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence              11   24568889999998764 56778778765543

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.34  E-value=0.26  Score=46.54  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=57.2

Q ss_pred             EEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHh--hcCC-----cc-c---CHHHHhcccCEEEEcCCCCc-
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEAD--KRGA-----EH-T---NIDDLCKQSDFIIITSALTP-  108 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~--~~g~-----~~-~---sl~ell~~aDvVil~lPlt~-  108 (274)
                      ||+|||. |.+|..+|-.|...+.  +.+.+|.+.....+.  ....     .. .   ++.+.++.||+|+++.-... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            6899999 9999999998875553  556677554221111  1111     11 1   23678999999999876421 


Q ss_pred             --ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         109 --DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       109 --~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                        .+|- ++  |.       +.+..-.|.+++|+++  .++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence              1221 11  11       1334446899999997  45553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.32  E-value=0.34  Score=45.98  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hhh--cC-------Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--ADK--RG-------AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~~--~g-------~~~-~sl~ell~~aDvV  100 (274)
                      .+|+|||. |.+|..+|..|...|.       +.+.+|.....  ..  +.+  ..       ... .+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            37999998 9999999999876554       46677764321  11  111  11       111 2456889999999


Q ss_pred             EEcCCCC--c-ccHHh-c--cHH-------HHhcCCC-CcEEEEcCCCchhcHHH
Q psy3240         101 IITSALT--P-DTHHL-I--NRA-------RLESMKP-GAILINTSRGQLVDQEA  141 (274)
Q Consensus       101 il~lPlt--~-~T~~l-i--~~~-------~l~~mk~-gailINv~RG~iVde~a  141 (274)
                      +++.-..  + +||.- +  |.+       .+....| .++++.++  .++|.-.
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            9976542  1 23321 1  111       2333344 89999986  6666554

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.27  E-value=0.28  Score=46.91  Aligned_cols=96  Identities=17%  Similarity=0.273  Sum_probs=63.2

Q ss_pred             CCCCCCCEEEEEcc---ChHHHHHHHHHc-cCCCeEEEEeCCCCC-h-h----HhhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240          37 GPALQNSTVGIVGC---GRIGLSVLEKLI-PYKVSKFLYTSRSKK-P-E----ADKRGAE--H-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        37 g~~L~gktVGIIGl---G~IG~~iA~~L~-~~G~~vv~~~~r~~~-~-~----a~~~g~~--~-~sl~ell~~aDvVil~  103 (274)
                      |..+.|++|+++|=   +++..+++..+. .+|+++.+..+..-. + .    +...|..  . .+++|+++.+|+|..-
T Consensus       154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            34699999999997   588999888766 458976666654422 1 1    1233433  2 3899999999999994


Q ss_pred             CCCCc-----cc------HHhccHHHH-hcCCCCcEEEEcC
Q psy3240         104 SALTP-----DT------HHLINRARL-ESMKPGAILINTS  132 (274)
Q Consensus       104 lPlt~-----~T------~~li~~~~l-~~mk~gailINv~  132 (274)
                      .--.+     ..      ...++.+.+ +.+|++++|.-+.
T Consensus       234 ~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL  274 (338)
T PRK08192        234 RIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL  274 (338)
T ss_pred             CcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence            21101     00      123466777 4588999988764

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.26  E-value=0.094  Score=49.67  Aligned_cols=94  Identities=22%  Similarity=0.361  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc---------------c----------CHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH---------------T----------NID   91 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~---------------~----------sl~   91 (274)
                      -.....++.++|+|..|-..+...+..|+-+..++-+..+.+ ....|..+               .          -+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            456677889999999999999998889985555555444322 11122110               0          134


Q ss_pred             HHhcccCEEEEc--CCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          92 DLCKQSDFIIIT--SALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        92 ell~~aDvVil~--lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      +.+++.|+|+..  +|..|. ..++.++..+.||||+++||.+
T Consensus       240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            567889999875  454444 3578899999999999999986

>cd00704 MDH Malate dehydrogenase

Probab=94.22  E-value=0.27  Score=46.62  Aligned_cols=97  Identities=23%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCC--CChhHh-----hc------CCcc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRS--KKPEAD-----KR------GAEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~--~~~~a~-----~~------g~~~-~sl~ell~~aDvV  100 (274)
                      .+|+|+|. |.+|..+|..|...|.       ..+.+|...  ......     ..      +... .+..+.++.||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999999875443       256666544  222110     00      0111 2567899999999


Q ss_pred             EEcCCCC--c-ccHHh-c--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q psy3240         101 IITSALT--P-DTHHL-I--NR-------ARLESM-KPGAILINTSRGQLVDQEA  141 (274)
Q Consensus       101 il~lPlt--~-~T~~l-i--~~-------~~l~~m-k~gailINv~RG~iVde~a  141 (274)
                      +++.-..  + +||.- +  |.       ..+... +|.+++|.++  .++|.-.
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  133 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA  133 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence            9876432  1 23221 1  11       134444 5888888885  6666554

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07877 hypothetical protein; Provisional

Probab=94.18  E-value=0.14  Score=53.68  Aligned_cols=97  Identities=20%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCC----------------hh---Hhh----c--CC-----
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKK----------------PE---ADK----R--GA-----   85 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~----------------~~---a~~----~--g~-----   85 (274)
                      ..|++++|+|+|+| +|..+|..|...|.  +.+++|...-.                .+   +.+    .  .+     
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999 89999999987773  34444322110                01   000    0  11     


Q ss_pred             ----cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240          86 ----EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus        86 ----~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                          ...++++++..+|+|+-|+- +-+++.++++...+.-+  .++.-.+.++.+|
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~  235 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD  235 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence                11257788899999999997 56888888877665433  2444444333343

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.17  E-value=0.16  Score=48.78  Aligned_cols=86  Identities=22%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHcc-CCCe---EEEEe-CCCCChh--HhhcCCcc--cCHHHHhcccCEEEEcCCCCccc
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIP-YKVS---KFLYT-SRSKKPE--ADKRGAEH--TNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~-~G~~---vv~~~-~r~~~~~--a~~~g~~~--~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .+.+|||||. |..|+.+.+.|.. -.+.   ...+. .++....  ........  .+.++ ++++|++++++|.. .+
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s   81 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS   81 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence            3468999996 9999999999983 4443   22333 3332221  11111222  24444 47899999999853 33


Q ss_pred             HHhccHHHHhcCCCCcEEEEcC
Q psy3240         111 HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~  132 (274)
                      +.+.. +.   .+.|+.+||.|
T Consensus        82 ~~~~~-~~---~~~G~~VID~S   99 (347)
T PRK06728         82 RQFVN-QA---VSSGAIVIDNT   99 (347)
T ss_pred             HHHHH-HH---HHCCCEEEECc
Confidence            33321 11   25789999998

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.13  E-value=0.14  Score=48.34  Aligned_cols=60  Identities=22%  Similarity=0.382  Sum_probs=42.9

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH--hhcCC--cccC---HHHHhcccCEEEEc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA--DKRGA--EHTN---IDDLCKQSDFIIIT  103 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a--~~~g~--~~~s---l~ell~~aDvVil~  103 (274)
                      +|||||-|..|+.+++.++.+|++++++++....+..  ....+  ...+   +.++++.||+|...
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5899999999999999999999988888765543331  11111  1223   66778889998653

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK05442 malate dehydrogenase; Provisional

Probab=94.04  E-value=0.27  Score=46.70  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hh--hc-------CCcc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--AD--KR-------GAEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~--~~-------g~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||. |.+|..+|-.|...|.       +.+.+|.....  ..  +.  ..       .... .+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998764332       45667753321  11  11  00       1111 2456889999999


Q ss_pred             EEcCCCC--c-ccHH-hc--cHH-------HHhc-CCCCcEEEEcCCCchhcHHHHH
Q psy3240         101 IITSALT--P-DTHH-LI--NRA-------RLES-MKPGAILINTSRGQLVDQEALI  143 (274)
Q Consensus       101 il~lPlt--~-~T~~-li--~~~-------~l~~-mk~gailINv~RG~iVde~aL~  143 (274)
                      +++.-..  + ++|. ++  |.+       .+.. .++.+++|.++  .++|.-.-+
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v  139 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI  139 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence            9976531  1 2332 11  111       2233 34789999998  666665433

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.94  E-value=0.26  Score=45.38  Aligned_cols=88  Identities=13%  Similarity=0.021  Sum_probs=59.6

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------CHHHHh-----cccCEEEEcCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------NIDDLC-----KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------sl~ell-----~~aDvVil~lP  105 (274)
                      -.|.+|.|.| .|.+|+.+++.++..|++++...++..+.+ +.+.|+..+       ++.+.+     ...|+|+-++.
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G  216 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG  216 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence            3588999999 599999999999999997665555443333 555665321       222222     13688887664


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . +    .+ ...++.++++..+|..+.
T Consensus       217 ~-~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       217 G-E----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             H-H----HH-HHHHHHhCcCcEEEEecc
Confidence            2 1    12 466778899999998875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06128 oxidoreductase; Provisional

Probab=93.93  E-value=0.31  Score=44.65  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      .++||++.|.|. |.||+.+|+.|...|+++++.+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            488999999985 99999999999999997665543

>PRK06182 short chain dehydrogenase; Validated

Probab=93.91  E-value=0.25  Score=44.29  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-----c---CHHHHhc-------ccCEEEEc
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-----T---NIDDLCK-------QSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-----~---sl~ell~-------~aDvVil~  103 (274)
                      .++++.|.|. |.||+.+|+.|...|+++++..++..+.. ....++..     .   +++++++       ..|+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            5789999995 89999999999999997766655433222 11222321     1   2333343       57999987


Q ss_pred             CCC
Q psy3240         104 SAL  106 (274)
Q Consensus       104 lPl  106 (274)
                      ...
T Consensus        82 ag~   84 (273)
T PRK06182         82 AGY   84 (273)
T ss_pred             CCc
Confidence            754

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.90  E-value=0.33  Score=46.16  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CEEEEEccChHHHHHHHHHcc--------CC--CeEEEEeCCCCCh--------h-H----hhcC----C------cccC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP--------YK--VSKFLYTSRSKKP--------E-A----DKRG----A------EHTN   89 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~--------~G--~~vv~~~~r~~~~--------~-a----~~~g----~------~~~s   89 (274)
                      .+|+|+|+|++|+.+++.|..        +|  .+++...++....        . .    ...+    +      ...+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999998865        56  5455444332110        0 0    0001    0      1126


Q ss_pred             HHHHh--cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhe
Q psy3240          90 IDDLC--KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVI  152 (274)
Q Consensus        90 l~ell--~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~  152 (274)
                      +++++  ..+|+|+-+++.. ....+    ....++.|.-+|-...|.+. ..++|.+.-+++|..
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            77877  4799999887532 22222    22233455555544444332 444555544444443

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.85  E-value=0.21  Score=47.31  Aligned_cols=88  Identities=28%  Similarity=0.288  Sum_probs=54.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc-C-------HHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT-N-------IDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|.|.|.||...++.++.+|+ ++++.+....+.+ +.+.|+... +       +.+.+     ...|+++-++
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  263 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI  263 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence            358999999999999999999999998 4555544443333 555665321 1       11211     1368888776


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTS  132 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~  132 (274)
                      .....    + .+.++.++++ ..++.++
T Consensus       264 G~~~~----~-~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       264 GNVNV----M-RAALECCHKGWGESIIIG  287 (368)
T ss_pred             CCHHH----H-HHHHHHhhcCCCeEEEEe
Confidence            53111    1 3445566664 6666655

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.84  E-value=0.26  Score=46.54  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHh--hcC---Ccc----c--CHHHHhcccCEEEEcCCCC-
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEAD--KRG---AEH----T--NIDDLCKQSDFIIITSALT-  107 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~--~~g---~~~----~--sl~ell~~aDvVil~lPlt-  107 (274)
                      ++|+|||. |.+|..+|-.|...+.  +.+.+|.+.....+.  ...   ...    .  ++.+.++.||+|+++.-.. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            48999999 9999999999976664  456777651111111  111   111    1  2357899999999877542 


Q ss_pred             -c-ccHH-hc--cHH-------HHhcCCCCcEEEEcCCCchhcH
Q psy3240         108 -P-DTHH-LI--NRA-------RLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       108 -~-~T~~-li--~~~-------~l~~mk~gailINv~RG~iVde  139 (274)
                       | ++|- ++  |.+       .+..-.|.+++|+++  .++|.
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvDv  122 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS--NPVNS  122 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--Cchhh
Confidence             2 2332 22  221       344446899999997  34544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.78  E-value=0.29  Score=45.20  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCC-eEEEEeCCCCChh-Hhh-cCCccc------CHHHHh-----cccCEEEEcCCC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADK-RGAEHT------NIDDLC-----KQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~-~g~~~~------sl~ell-----~~aDvVil~lPl  106 (274)
                      |.+|.|.|. |.+|+.+++.++.+|+ ++++..++..+.+ ..+ .|+...      ++.+.+     ...|+|+-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            389999998 9999999999999998 5655544433333 332 665321      333322     247888887653


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +   . + .+.++.++++..+|.++.
T Consensus       235 -~---~-~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 -E---I-S-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             -H---H-H-HHHHHHhccCCEEEEEee
Confidence             1   1 2 456777888888888763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK12742 oxidoreductase; Provisional

Probab=93.70  E-value=0.35  Score=41.98  Aligned_cols=36  Identities=14%  Similarity=0.240  Sum_probs=30.1

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .+.||++.|.|. |.||+.+|+.|...|+++++...+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            478999999995 899999999999999976555443

>KOG4230|consensus

Probab=93.70  E-value=0.13  Score=52.37  Aligned_cols=79  Identities=16%  Similarity=0.375  Sum_probs=61.1

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +-.+.|+...++|--. +|..+|..|+.....+.+..+.++            ++.|.+.++|+|+.++--    .+++.
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~------------~lae~v~~ADIvIvAiG~----PefVK  220 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTR------------NLAEKVSRADIVIVAIGQ----PEFVK  220 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCCCc------------cHHHHhccCCEEEEEcCC----cceee
Confidence            3568999999999865 599999999988886666654332            688899999999998852    34455


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .++   +|||+++||++--
T Consensus       221 gdW---iKpGavVIDvGIN  236 (935)
T KOG4230|consen  221 GDW---IKPGAVVIDVGIN  236 (935)
T ss_pred             ccc---ccCCcEEEEcccc
Confidence            554   5999999999843

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.65  E-value=0.26  Score=43.96  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcC-Cccc-CHH-HH--hcccCEEEEcCCCCcccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRG-AEHT-NID-DL--CKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g-~~~~-sl~-el--l~~aDvVil~lPlt~~T~~  112 (274)
                      -.|.++.|.|.|.+|+.+++.++..|++ +++.+++..+.. +.+.| .... ... +.  -...|+++.++....    
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----  171 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----  171 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence            3689999999999999999999999997 555443333332 44455 2111 111 11  134788888765322    


Q ss_pred             hccHHHHhcCCCCcEEEEcCCC
Q psy3240         113 LINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG  134 (274)
                      . -...++.++++..+++++-.
T Consensus       172 ~-~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         172 A-LETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             H-HHHHHHHhcCCcEEEEEecc
Confidence            1 24557778999999988753

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.65  E-value=0.35  Score=45.87  Aligned_cols=67  Identities=24%  Similarity=0.298  Sum_probs=43.8

Q ss_pred             CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCChh--Hhhc--CC-----c-ccCH---HHHhcccCEEEEcC--C
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPE--ADKR--GA-----E-HTNI---DDLCKQSDFIIITS--A  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~~--a~~~--g~-----~-~~sl---~ell~~aDvVil~l--P  105 (274)
                      ++|+|||.|.+|+++|-+|..  ++-+.+.+|.......  +.+.  ..     . ...-   .+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            589999999999999999954  4435677776643332  1111  11     0 1111   46788999999988  5


Q ss_pred             CCcc
Q psy3240         106 LTPD  109 (274)
Q Consensus       106 lt~~  109 (274)
                      -.|.
T Consensus        81 rKpG   84 (313)
T COG0039          81 RKPG   84 (313)
T ss_pred             CCCC
Confidence            5554

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=93.63  E-value=0.68  Score=43.39  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC-ChhHhhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK-KPEADKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~-~~~a~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~~  116 (274)
                      ..+|.|.|. |.+|+.+.+.|..+|.+.+...++.. ..  .-.|+.. .+++|+-..  .|+.++++|. +.+...+. 
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~--~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~-   83 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT--TVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL-   83 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC--eEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH-
Confidence            467999996 89999999999999886332222221 11  1235544 489999887  8999999995 34444442 


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +..++=-+.++++-.+- ..-+++.|.+..++.|+.++.
T Consensus        84 e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG  121 (291)
T PRK05678         84 EAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG  121 (291)
T ss_pred             HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence            23322123444544443 344555888988888887776

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.62  E-value=0.69  Score=45.09  Aligned_cols=108  Identities=14%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc---CHH-----HHhcccCEEEEcCCCCcc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT---NID-----DLCKQSDFIIITSALTPD  109 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~---sl~-----ell~~aDvVil~lPlt~~  109 (274)
                      +|.|||+|..|.+.|+.|...|.++.++|.+.....      ....|+...   ..+     +.+.+.|.|+..-...+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            689999999999999999999997777775433211      223455431   122     467789988884433333


Q ss_pred             cHHh----------ccH-HHH-hcCCCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 THHL----------INR-ARL-ESMKPG-AILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~~l----------i~~-~~l-~~mk~g-ailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ..-+          +.. +.+ ..+++. .+-|--+.|+.-...-|...|+..|.
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~  136 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL  136 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence            2222          221 222 333333 34455556888777777777777654

>PRK15076 alpha-galactosidase; Provisional

Probab=93.62  E-value=0.13  Score=50.73  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             CEEEEEccChHHHHHHH--HH---ccC-CCeEEEEeCCCCChh-H--------hhcCC----c-ccCHHHHhcccCEEEE
Q psy3240          43 STVGIVGCGRIGLSVLE--KL---IPY-KVSKFLYTSRSKKPE-A--------DKRGA----E-HTNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~--~L---~~~-G~~vv~~~~r~~~~~-a--------~~~g~----~-~~sl~ell~~aDvVil  102 (274)
                      ++|+|||.|.+|...+-  .+   .++ +.+++.+|....+.. .        ...+.    . ..++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955443  22   233 446777776543322 1        11222    1 1267899999999999


Q ss_pred             cCCCCccc-H---------------------------------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         103 TSALTPDT-H---------------------------------HLIN--RARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       103 ~lPlt~~T-~---------------------------------~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                      ++-..... .                                 .++-  .+.+....|++++||.+--.-+-..++.+.-
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~~~  161 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNRYP  161 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhcCC
Confidence            88764111 1                                 0110  1234445699999999876555556666442


Q ss_pred             hhhhheeeh
Q psy3240         147 ADIRVISIS  155 (274)
Q Consensus       147 ~~~~i~~~D  155 (274)
                      +.+=++.+|
T Consensus       162 ~~rviG~c~  170 (431)
T PRK15076        162 GIKTVGLCH  170 (431)
T ss_pred             CCCEEEECC
Confidence            233344543

>PLN02827 Alcohol dehydrogenase-like

Probab=93.61  E-value=0.31  Score=46.50  Aligned_cols=89  Identities=24%  Similarity=0.285  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeC-CCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTS-RSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~-r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~l  104 (274)
                      -.|.+|.|.|.|.+|..+++.++..|+++++... ...+.+ +++.|+...        +..+.+.     ..|+|+-++
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  271 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV  271 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence            3589999999999999999999999986444433 333333 556666321        1112221     368888766


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ....    .+ ...+..+++| ..++.+|-
T Consensus       272 G~~~----~~-~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        272 GDTG----IA-TTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CChH----HH-HHHHHhhccCCCEEEEECC
Confidence            5211    12 2456667777 77777663

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=93.60  E-value=0.2  Score=45.90  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCcc-c-----CHH--HH--hcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEH-T-----NID--DL--CKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~-~-----sl~--el--l~~aDvVil~lPlt  107 (274)
                      ..|.+|.|+|.|.+|+.+++.+++.|++++....++. +.. ..+.++.. .     +..  ..  -...|+++-+++..
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~  237 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP  237 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh
Confidence            3578999999999999999999999997344333333 222 33344421 1     111  11  14579999877532


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      +     ...+.++.|+++..+++++...
T Consensus       238 ~-----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 K-----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             H-----HHHHHHHHHhcCCEEEEEecCC
Confidence            1     2234567788888999887644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.42  E-value=0.26  Score=45.03  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=56.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHh--cccCEEEEcCCCCcccHHhcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLC--KQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell--~~aDvVil~lPlt~~T~~li~  115 (274)
                      -.|.+|.|.|.|.+|+.+++.++..|.++++...+..+.+ +++.|+... +..+..  ...|+++-++.....    + 
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~----~-  228 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSG----L-  228 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHH----H-
Confidence            4588999999999999999999999997555544433333 445666432 222211  347888887642111    1 


Q ss_pred             HHHHhcCCCCcEEEEcC
Q psy3240         116 RARLESMKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~mk~gailINv~  132 (274)
                      ...++.++++..++..+
T Consensus       229 ~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         229 ELALRLVRPRGTVVLKS  245 (319)
T ss_pred             HHHHHHhhcCCEEEEEc
Confidence            24456677777777654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.42  E-value=0.46  Score=46.32  Aligned_cols=86  Identities=8%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-----cCHH---H-HhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-----TNID---D-LCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-----~sl~---e-ll~~aDvVil~lPlt~~T~  111 (274)
                      ...++-|+|+|.+|+.+++.|++.|.++++.++... ......+...     .+.+   + -+++|+.|+++.+..+++.
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~-~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl  317 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL-EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA  317 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh-hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence            357899999999999999999988887777775422 1122233322     1222   1 2568999999888755544


Q ss_pred             HhccHHHHhcCCCCcEEE
Q psy3240         112 HLINRARLESMKPGAILI  129 (274)
Q Consensus       112 ~li~~~~l~~mk~gailI  129 (274)
                      .++  ...+.+.|+..+|
T Consensus       318 ~iv--L~ar~l~p~~kII  333 (393)
T PRK10537        318 FVV--LAAKEMSSDVKTV  333 (393)
T ss_pred             HHH--HHHHHhCCCCcEE
Confidence            433  3445556654443

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.42  E-value=0.071  Score=43.48  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil~lPl  106 (274)
                      .++|.|+|+|.+|..+|+.|...|+. ..++|+..-...  ..       ..|...+     .+.++-+.+++.....+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            68999999999999999999988885 455665443322  11       1122211     234444556666654444


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      +++   .+ .+.+   ++--++|++. ...-....+.+..++.++.++++-+
T Consensus        82 ~~~---~~-~~~~---~~~d~vi~~~-d~~~~~~~l~~~~~~~~~p~i~~~~  125 (135)
T PF00899_consen   82 DEE---NI-EELL---KDYDIVIDCV-DSLAARLLLNEICREYGIPFIDAGV  125 (135)
T ss_dssp             SHH---HH-HHHH---HTSSEEEEES-SSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             ccc---cc-cccc---cCCCEEEEec-CCHHHHHHHHHHHHHcCCCEEEEEe
Confidence            221   11 2333   3334777763 3334445666666666777666554

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK10083 putative oxidoreductase; Provisional

Probab=93.40  E-value=0.4  Score=44.16  Aligned_cols=90  Identities=18%  Similarity=0.339  Sum_probs=56.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCC-Chh-HhhcCCccc------CHHHHhc----ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSK-KPE-ADKRGAEHT------NIDDLCK----QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~-~~~-a~~~g~~~~------sl~ell~----~aDvVil~lPl  106 (274)
                      -.|.+|.|.|.|.+|+.+++.++. +|+++++...+.. +.. +.+.|+...      ++.+.+.    +.|+|+-++..
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~  238 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH  238 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence            358899999999999999999986 6986555444333 333 455665321      2333332    23566665542


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      . .   .+ .+.++.++++..+|+++..
T Consensus       239 ~-~---~~-~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        239 P-S---IL-EEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             H-H---HH-HHHHHHhhcCCEEEEEccC
Confidence            1 1   12 3456778888888888753

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=93.36  E-value=0.34  Score=44.35  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CH-HHHhcccCEEEEcCCCCcccH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NI-DDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl-~ell~~aDvVil~lPlt~~T~  111 (274)
                      -.|.+|.|+|.|.+|+.+++.++..|.++++..+...+.. ..+.|....      +. ...-...|+++-++....   
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---  237 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---  237 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH---
Confidence            3578999999999999999999999997666554443333 333444211      11 111235788888764321   


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                        ...+.+..|+++..+++++.
T Consensus       238 --~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 --AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             --HHHHHHHhcccCCEEEEECC
Confidence              22456778888889998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02214 cinnamoyl-CoA reductase

Probab=93.35  E-value=0.44  Score=44.74  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh-----cCCcc--------cCHHHHhcccCEEE
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK-----RGAEH--------TNIDDLCKQSDFII  101 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~-----~g~~~--------~sl~ell~~aDvVi  101 (274)
                      .+++++|.|.|. |.||+.+++.|...|.++++..++.....   ...     ..+..        .+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            467899999997 99999999999999997766655433211   000     01111        14567788899988


Q ss_pred             EcCCC
Q psy3240         102 ITSAL  106 (274)
Q Consensus       102 l~lPl  106 (274)
                      .+...
T Consensus        87 h~A~~   91 (342)
T PLN02214         87 HTASP   91 (342)
T ss_pred             EecCC
Confidence            87753

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.32  E-value=0.26  Score=45.81  Aligned_cols=88  Identities=24%  Similarity=0.326  Sum_probs=54.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC-CCChh-HhhcCCccc------CHHHH---hc--ccC-EEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR-SKKPE-ADKRGAEHT------NIDDL---CK--QSD-FIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r-~~~~~-a~~~g~~~~------sl~el---l~--~aD-vVil~lP  105 (274)
                      -.|++|.|.|.|.+|..+++.++..|+++++...+ ..+.+ +++.|+...      +.+++   ..  ..| +|+-++.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G  238 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG  238 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence            35899999999999999999999999975444333 33333 445555321      11222   21  245 6666554


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      . +   ..+ .+.++.++++..++.+|
T Consensus       239 ~-~---~~~-~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        239 V-P---QTV-ELAIEIAGPRAQLALVG  260 (347)
T ss_pred             C-H---HHH-HHHHHHhhcCCEEEEEc
Confidence            2 1   122 34566778888888776

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=93.31  E-value=0.74  Score=43.49  Aligned_cols=104  Identities=17%  Similarity=0.286  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh------H----hhcCC--ccc-CHHHHhcccCEEEEcCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------A----DKRGA--EHT-NIDDLCKQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a----~~~g~--~~~-sl~ell~~aDvVil~lP  105 (274)
                      |+|+|+..+|= .+|+.++......+|+++.+..+..-.+.      +    .+.|.  ... ++++.++.+|+|..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            99999999995 58999999999999998777766544331      1    22243  233 89999999999998766


Q ss_pred             CC--cccH-----------HhccHHHHhcCCCCcEEEEcC---CCchhcHHHHHh
Q psy3240         106 LT--PDTH-----------HLINRARLESMKPGAILINTS---RGQLVDQEALID  144 (274)
Q Consensus       106 lt--~~T~-----------~li~~~~l~~mk~gailINv~---RG~iVde~aL~~  144 (274)
                      .+  ++.+           .-+|.+.++.-+++++|.-|=   ||. ...+++++
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~-EVTdeV~d  284 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGE-EVTDEVFE  284 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCC-ccCHHHhC
Confidence            43  2221           345778888888899998873   552 33344444

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=93.30  E-value=0.52  Score=39.14  Aligned_cols=92  Identities=18%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             HHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE
Q psy3240          56 SVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL  128 (274)
Q Consensus        56 ~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gail  128 (274)
                      ..+++|...|.+ |.+-.......      ..+.|+..+ +.+|++++||+|+-.=|.+        .+.++.|++|.++
T Consensus        18 ~~v~~L~~~G~~-V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l   88 (136)
T PF05222_consen   18 EDVKKLVKLGHE-VLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL   88 (136)
T ss_dssp             HHHHHHHHTTSE-EEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred             HHHHHHHhCCCE-EEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence            456778888995 44444432211      345687766 4569999999999876653        4567889999999


Q ss_pred             EEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         129 INTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       129 INv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      |-...-.  ....+++.|.++++..+|+..
T Consensus        89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~  116 (136)
T PF05222_consen   89 IGFLHPA--QNKELLEALAKKGITAFALEL  116 (136)
T ss_dssp             EEE--GG--GHHHHHHHHHHCTEEEEEGGG
T ss_pred             EEeeccc--cCHHHHHHHHHCCCEEEEhhh
Confidence            9776544  588888999999998888655

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.29  E-value=0.29  Score=45.92  Aligned_cols=63  Identities=27%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCC--CChh--Hh-------hcCC--c--cc-CHHHHhcccCEEEEc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRS--KKPE--AD-------KRGA--E--HT-NIDDLCKQSDFIIIT  103 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~--~~~~--a~-------~~g~--~--~~-sl~ell~~aDvVil~  103 (274)
                      ++|+|+|. |.+|..+|..|...|.  +++.++...  .+..  ..       ..+.  .  .. + .+.++.||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            58999998 9999999999987775  366777633  2211  10       1111  1  11 4 3459999999999


Q ss_pred             CCC
Q psy3240         104 SAL  106 (274)
Q Consensus       104 lPl  106 (274)
                      ...
T Consensus        80 ag~   82 (309)
T cd05294          80 AGV   82 (309)
T ss_pred             cCC
Confidence            863

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.24  E-value=0.37  Score=45.34  Aligned_cols=88  Identities=17%  Similarity=0.075  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc-------CHHHHhc-----ccCEEEEcC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT-------NIDDLCK-----QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~-------sl~ell~-----~aDvVil~l  104 (274)
                      -.|.+|.|.|. |.+|..+++.++.+|+++++.+.+..+.. .. +.|+..+       ++.+.+.     ..|+++-++
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v  236 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV  236 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence            35899999999 99999999999999997665554433333 33 4666321       2333222     368888776


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .. +    . -...++.++++..++.+|-
T Consensus       237 G~-~----~-~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        237 GG-D----M-LDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             CH-H----H-HHHHHHHhccCCEEEEECc
Confidence            42 1    1 2456777888888888763

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.23  E-value=0.18  Score=47.52  Aligned_cols=89  Identities=22%  Similarity=0.364  Sum_probs=53.7

Q ss_pred             EEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c--------CCcc-cCHHHHhcccCEEEEcCCCC-
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R--------GAEH-TNIDDLCKQSDFIIITSALT-  107 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~--------g~~~-~sl~ell~~aDvVil~lPlt-  107 (274)
                      ||+|||.|.+|..+|..|...+.  +.+.+|.......  +.+  .        .... ..-.+.++.||+|+++.-.. 
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~   80 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence            68999999999999998865554  4667776544332  111  1        0111 12357889999999976542 


Q ss_pred             -c-cc---HHhc--cHH-------HHhcCCCCcEEEEcC
Q psy3240         108 -P-DT---HHLI--NRA-------RLESMKPGAILINTS  132 (274)
Q Consensus       108 -~-~T---~~li--~~~-------~l~~mk~gailINv~  132 (274)
                       | .|   ..++  |.+       .+..-.|++++|.++
T Consensus        81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence             1 24   2232  222       233335788888775

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=93.21  E-value=0.36  Score=45.46  Aligned_cols=89  Identities=21%  Similarity=0.233  Sum_probs=55.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc-C-------HHHHhc-----ccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT-N-------IDDLCK-----QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell~-----~aDvVil~l  104 (274)
                      -.|.+|.|.|.|.+|..+++.++.+|+ ++++.++...+.+ +++.|+... +       +.+.++     ..|+++-++
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~  265 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT  265 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence            358999999999999999999999998 4555554444333 555665321 1       112111     367777766


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ....    .+ ...+..++++ ..++.++.
T Consensus       266 G~~~----~~-~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         266 GNID----AM-ISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             CChH----HH-HHHHHHhhcCCCEEEEECc
Confidence            4311    11 2345566774 67777664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=93.21  E-value=0.43  Score=44.40  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHH----HHhc--ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NID----DLCK--QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~----ell~--~aDvVil~lPl  106 (274)
                      .|++|.|.|.|.+|+.+++.++..|+ ++++.+....+.. +.+.|+...      ++.    +...  ..|+|+-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 4444443333322 344555321      222    2222  38999987753


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...    + ...++.++++..++.++.
T Consensus       252 ~~~----~-~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QAT----L-DTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HHH----H-HHHHHhccCCCEEEEEcc
Confidence            221    1 355677888888988875

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.18  E-value=0.45  Score=44.05  Aligned_cols=88  Identities=14%  Similarity=0.051  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCccc-------CHHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAEHT-------NIDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~~~-------sl~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|.|. |.+|+.+++.++.+|+++++..++..+.+ .++ .|+...       ++.+.+     ...|+|+-++
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~  229 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV  229 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence            35899999998 99999999999999997665554443333 334 565321       222222     2468888766


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..    . . -.+.++.++++..++.++.
T Consensus       230 g~----~-~-~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         230 GG----K-M-LDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             CH----H-H-HHHHHHHhccCcEEEEecc
Confidence            42    1 1 2356777888888888764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.18  E-value=0.15  Score=45.25  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             CEEEEEccChHHHHHHHH--HccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhc--ccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEK--LIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCK--QSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~--L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~--~aDvVil~lPlt  107 (274)
                      -++.|||.|++|++++..  .+..||+.+...+..+..- ..-.++...   ++++.++  +.|+.++|+|..
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~  157 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE  157 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence            368999999999999974  3478898776665544332 222233322   5666776  678999999964

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.18  E-value=0.62  Score=49.21  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             CEEEEEccChHHHHH-HHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHh----
Q psy3240          43 STVGIVGCGRIGLSV-LEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHL----  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~i-A~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~l----  113 (274)
                      +++.|+|+|..|.+. |+.|+..|+++.++|.+.....  ..+.|+...  ...+.+..+|+|+..-...+...-+    
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~   84 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK   84 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence            469999999999998 9999999998877775443222  334466542  2346677899988753333332222    


Q ss_pred             ------ccH-HHHhcC-CC-CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         114 ------INR-ARLESM-KP-GAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       114 ------i~~-~~l~~m-k~-gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                            +++ +++..+ +. ..+-|--+.|+.--..-+...|+..|.
T Consensus        85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence                  222 233332 32 245555566888888877777887664

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=93.16  E-value=2.6  Score=41.58  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=62.4

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCCe--E-EEEeCC-------CC---Chh--Hhh--cCCcccCHHHHhccc
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS--K-FLYTSR-------SK---KPE--ADK--RGAEHTNIDDLCKQS   97 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~--v-v~~~~r-------~~---~~~--a~~--~g~~~~sl~ell~~a   97 (274)
                      ..|++|+..+|.+.|.|.-|-.+++.+++.|++  . +++|+.       ..   ...  ...  ..-.... ++.+..+
T Consensus       192 ~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~a  270 (432)
T COG0281         192 LTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGA  270 (432)
T ss_pred             HhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCC
Confidence            457899999999999999999999999999985  3 334332       11   000  000  0000111 4467778


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      |+++=+--   .  +++.++.++.|.+..++.=+|--.
T Consensus       271 dv~iG~S~---~--G~~t~e~V~~Ma~~PiIfalaNP~  303 (432)
T COG0281         271 DVLIGVSG---V--GAFTEEMVKEMAKHPIIFALANPT  303 (432)
T ss_pred             CEEEEcCC---C--CCcCHHHHHHhccCCEEeecCCCC
Confidence            87766321   2  778888888888888887776533

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.15  E-value=0.38  Score=44.96  Aligned_cols=38  Identities=32%  Similarity=0.417  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~   75 (274)
                      +.|..++|.|+|+|.+|..+|+.|...|.+. .++|+..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            4689999999999999999999999888864 4555443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=93.12  E-value=0.49  Score=47.89  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             CCCCCCCEEEEEcc---ChHHHHHHHHHccCC-CeEEEEeCCCCC-hh-----HhhcCCcc---cCHHHHhcccCEE--E
Q psy3240          37 GPALQNSTVGIVGC---GRIGLSVLEKLIPYK-VSKFLYTSRSKK-PE-----ADKRGAEH---TNIDDLCKQSDFI--I  101 (274)
Q Consensus        37 g~~L~gktVGIIGl---G~IG~~iA~~L~~~G-~~vv~~~~r~~~-~~-----a~~~g~~~---~sl~ell~~aDvV--i  101 (274)
                      |..+.|++|++||=   +++..+++..+..+| +++.+..+..-. +.     +.+.|...   .+++|+++.||+.  .
T Consensus       169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw  248 (525)
T PRK13376        169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW  248 (525)
T ss_pred             CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence            55689999999997   699999999999998 877666654432 11     22335432   4899999999952  2


Q ss_pred             E-------cCCCC--cc-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         102 I-------TSALT--PD-----THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       102 l-------~lPlt--~~-----T~~li~~~~l~~mk~gailINv~  132 (274)
                      .       .+...  +.     -...++++.++.+|++++|.-+.
T Consensus       249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            2       12111  00     12246888999999999998864

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=93.12  E-value=1.9  Score=45.51  Aligned_cols=97  Identities=11%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCC---eEEEEeCCC-------C-ChhHhh---cCCcccCHHHHhcccCEE
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRS-------K-KPEADK---RGAEHTNIDDLCKQSDFI  100 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~-------~-~~~a~~---~g~~~~sl~ell~~aDvV  100 (274)
                      ..|+.+...+|.|.|.|.-|-.+|+.|...|.   +.+.+|++-       . -...+.   ......+|.|+++.+|++
T Consensus       178 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~  257 (752)
T PRK07232        178 LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVF  257 (752)
T ss_pred             HhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEE
Confidence            45788999999999999999999999998888   334444321       1 011111   111123899999999987


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      +=. .    +.++++++.++.|.+..++.=.|.-..
T Consensus       258 iG~-s----~~g~~~~~~v~~M~~~piifalsNP~~  288 (752)
T PRK07232        258 LGL-S----AAGVLTPEMVKSMADNPIIFALANPDP  288 (752)
T ss_pred             EEc-C----CCCCCCHHHHHHhccCCEEEecCCCCc
Confidence            753 1    137899999999998889888887554

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=93.11  E-value=0.36  Score=45.77  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             EEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hhHhhc---C--------Cccc-CHHHHhcccCEEE
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PEADKR---G--------AEHT-NIDDLCKQSDFII  101 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~a~~~---g--------~~~~-sl~ell~~aDvVi  101 (274)
                      +|+|||. |.+|..+|..|...+.       +.+.+|.....  ......   .        .... +..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999876544       25566653332  111100   0        1111 4468899999999


Q ss_pred             EcCCCCc---ccHH-hc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q psy3240         102 ITSALTP---DTHH-LI--NR-------ARLESM-KPGAILINTSRGQLVDQEA  141 (274)
Q Consensus       102 l~lPlt~---~T~~-li--~~-------~~l~~m-k~gailINv~RG~iVde~a  141 (274)
                      ++.-...   +|+. ++  |.       ..+... +|.+++|.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            8765421   1222 22  11       123444 5788999887  5665544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK08324 short chain dehydrogenase; Validated

Probab=93.10  E-value=0.32  Score=50.27  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=33.4

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      ...+.|+++.|.| .|.||+.+|+.|...|+++++.+++..
T Consensus       417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            3567899999999 599999999999999997777765543

>PRK07806 short chain dehydrogenase; Provisional

Probab=93.07  E-value=0.45  Score=41.69  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+.++++.|.|. |.||+.+++.|...|.++++..++.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999996 9999999999999999776665543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.05  E-value=1.2  Score=43.50  Aligned_cols=112  Identities=19%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCC-CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccH
Q psy3240          40 LQN-STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        40 L~g-ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +++ ++|.|+|+|..|.+.++.|...  |+++.++|.+.....  ..+.|+...   .-.+.+.++|+|+..--..+...
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p   83 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP   83 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence            456 7899999999999999999876  576777775543221  122255441   12344578998777543322222


Q ss_pred             H----------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         112 H----------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       112 ~----------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      -          ++.+ +.+.. ++...+-|--+-|+.--..-+...|+..|.
T Consensus        84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  135 (438)
T PRK04663         84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV  135 (438)
T ss_pred             HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence            1          2221 33322 333344444455887777777777776554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.01  E-value=0.23  Score=36.69  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +|.|||-|.+|-.+|..|+.+|.++.++.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999998877776554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.00  E-value=0.66  Score=40.35  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+.++++.|.|. |.||+.+|+.|...|+++++..++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence            578899999985 9999999999999999766655443

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.00  E-value=0.44  Score=45.02  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             CC-CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--------HhhcC-Ccc-cCHHHHhcccCEEEEc
Q psy3240          37 GP-ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--------ADKRG-AEH-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        37 g~-~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--------a~~~g-~~~-~sl~ell~~aDvVil~  103 (274)
                      |. .+.|++|++||- +++..+++..+..+|+++.+..+......        +...| +.. .+++++++.+|+|..-
T Consensus       147 g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        147 PEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            44 689999999997 79999999999999997777766553211        11223 222 4899999999999983

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.99  E-value=0.3  Score=46.08  Aligned_cols=88  Identities=25%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc----C----HHHHhc-----ccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT----N----IDDLCK-----QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~----s----l~ell~-----~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.+|...++.++.+|++ +++.+....+.. +.+.|+...    +    +.+.+.     .+|+|+-++
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  264 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI  264 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence            3589999999999999999999999994 555555444443 555665321    1    222221     368888766


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTS  132 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~  132 (274)
                      ....    .+ .+.++.++++ ..++.++
T Consensus       265 g~~~----~~-~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         265 GNVK----VM-RAALEACHKGWGTSVIIG  288 (368)
T ss_pred             CChH----HH-HHHHHhhccCCCeEEEEc
Confidence            4211    11 2345666665 6666655

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK05993 short chain dehydrogenase; Provisional

Probab=92.95  E-value=0.44  Score=42.99  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .++++.|.|. |.||+.+|+.|...|.++++.+++..
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~   39 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE   39 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3678999997 99999999999999998777665443

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=92.90  E-value=0.18  Score=48.00  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             EEEEEc-cChHHHHHHHHHccCCCeE---EEEeCC-CCChhHhhcCCc--ccCH-HHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          44 TVGIVG-CGRIGLSVLEKLIPYKVSK---FLYTSR-SKKPEADKRGAE--HTNI-DDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        44 tVGIIG-lG~IG~~iA~~L~~~G~~v---v~~~~r-~~~~~a~~~g~~--~~sl-~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +|+||| .|.+|+.+++.|...+..+   +.+.+. +........+..  ..++ .+.++.+|+|+.|+|.. .++.+. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence            589999 6999999999998755432   222222 221111111221  1122 23458899999999964 232222 


Q ss_pred             HHHHhcCCCCcEEEEcC
Q psy3240         116 RARLESMKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~mk~gailINv~  132 (274)
                      .+.   ++.|+.+||.+
T Consensus        79 ~~~---~~~G~~VID~s   92 (339)
T TIGR01296        79 PKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHH---HHCCCEEEECC
Confidence            122   35688999988

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=92.77  E-value=0.86  Score=42.62  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhccH
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~~  116 (274)
                      ...+|.|.|. |.+|..+-+.+++.|.+.+...+.. +-...-.|... .+++|+...  .|+.++++|. +.+...+. 
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~-~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~-   81 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPG-KGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF-   81 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCC-CCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH-
Confidence            3567999995 9999999999999998743333332 11122345554 389998886  6999999995 34444443 


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +..++=-+.++++--+-++ -+++.|.+..++.|+.++.
T Consensus        82 e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~girilG  119 (286)
T TIGR01019        82 EAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLIG  119 (286)
T ss_pred             HHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEEC
Confidence            2332222344444444433 3678899988888887776

ATP citrate lyases appear to form an outgroup.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=92.74  E-value=0.37  Score=45.40  Aligned_cols=89  Identities=24%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc----C----HHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT----N----IDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~----s----l~ell-----~~aDvVil~l  104 (274)
                      ..|.+|.|+|.|.+|..+++.++.+|++ +++.++...+.. +.+.|+...    +    +.+.+     ...|+|+-++
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~  262 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT  262 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence            4589999999999999999999999984 555554433333 455665321    1    11211     2378888766


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ...    ..+ .+.++.++++ ..++.++.
T Consensus       263 g~~----~~~-~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         263 GNA----DLM-NEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCh----HHH-HHHHHhcccCCCEEEEEcC
Confidence            431    112 3456677764 77777764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN00106 malate dehydrogenase

Probab=92.74  E-value=0.32  Score=46.23  Aligned_cols=93  Identities=20%  Similarity=0.261  Sum_probs=57.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhh---c----CCc----ccCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADK---R----GAE----HTNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~---~----g~~----~~sl~ell~~aDvVil~lPl  106 (274)
                      ..+||+|+|. |.+|..+|..|...+.  +.+.+|.......+.+   .    .+.    ..++.+.++.||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3469999999 9999999999974443  5677775542221111   0    111    11457889999999998654


Q ss_pred             Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         107 TP---DTHH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~---~T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                      ..   .++. ++  |.       +.+....|.+++++++-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN  136 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN  136 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            22   2222 12  11       12333458899999874

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.67  E-value=0.49  Score=43.61  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHH--Hh--cccCEEEEcCCCCc
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDD--LC--KQSDFIIITSALTP  108 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~e--ll--~~aDvVil~lPlt~  108 (274)
                      .|.+|.|.|. |.+|+.+++.++..|++++...+.. +.. +.+.|+...      ...+  ..  +..|+++-++.. +
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~  254 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P  254 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence            5899999998 9999999999999999866655433 333 444554221      1111  11  247888876652 1


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         109 DTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~  132 (274)
                           .-...++.++++..+|+++
T Consensus       255 -----~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         255 -----LFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             -----HHHHHHHHhccCCEEEEec
Confidence                 1235567788888888775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.66  E-value=0.57  Score=43.53  Aligned_cols=88  Identities=25%  Similarity=0.343  Sum_probs=56.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHH----HHh--cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NID----DLC--KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~----ell--~~aDvVil~lPl  106 (274)
                      .|++|.|.|.|.+|..+++.++..|.+ +++.+.+..+.. +++.|+...      ++.    ++.  +..|+++-++..
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            589999999999999999999999995 444444433333 455565321      211    222  247888876653


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .    ..+ ...++.++++..+|.++-
T Consensus       246 ~----~~~-~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         246 Q----DTF-EQALKVLKPGGTISNVNY  267 (351)
T ss_pred             H----HHH-HHHHHHhhcCCEEEEecc
Confidence            1    112 355677888888888763

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=92.62  E-value=0.43  Score=44.55  Aligned_cols=88  Identities=20%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CH-------HHHh--cccCEEEEc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NI-------DDLC--KQSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl-------~ell--~~aDvVil~  103 (274)
                      .|++|.|.|.|.+|+.+++.++.+|+ ++++.++...+.. ..+.|+...      +.       .++.  ...|+|+-+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            78999999999999999999999999 6555544333222 445555321      11       1111  236888876


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +....    . -...++.++++..++.++.
T Consensus       257 ~g~~~----~-~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         257 SGHPA----A-VPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCChH----H-HHHHHHHhccCCEEEEEcC
Confidence            64211    1 2345677888888887764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.54  E-value=0.73  Score=44.41  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc------CHHH----Hh--cccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT------NIDD----LC--KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~------sl~e----ll--~~aDvVil~lP  105 (274)
                      -.|++|.|.|.|.+|..+++.++.+|+++++..++.. +.. +++.|+...      ++.+    +.  ...|+++-++-
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G  263 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG  263 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence            4589999999999999999999999997665544333 333 566676321      2222    22  24799988776


Q ss_pred             CCcc----------cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         106 LTPD----------THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       106 lt~~----------T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ....          ....+ .+.++.++++..++.+|-.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence            4210          01123 3457788999999988753

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.52  E-value=0.6  Score=42.51  Aligned_cols=88  Identities=13%  Similarity=0.047  Sum_probs=57.0

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh-----cccCEEEEcCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC-----KQSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell-----~~aDvVil~lPl  106 (274)
                      -.|.+|.|.| .|.+|+.+++.++.+|++++...+...+.. .++.|+...      ++.+.+     ...|+|+-++..
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~  221 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG  221 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH
Confidence            3589999999 699999999999999997665554443333 445665321      222222     235777776542


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +     .....++.++++..++.++.
T Consensus       222 -~-----~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         222 -E-----FSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             -H-----HHHHHHHhhccCCEEEEEcc
Confidence             1     12456777888888888764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=92.48  E-value=0.57  Score=42.63  Aligned_cols=87  Identities=13%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CH----HHHh-----cccCEEEEcCCCCc
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NI----DDLC-----KQSDFIIITSALTP  108 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl----~ell-----~~aDvVil~lPlt~  108 (274)
                      .+.+|.|+|. |.+|+.+++.++..|++++..++...+.+ ..+.|+... +.    .+.+     ...|+|+-++..  
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~--  223 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG--  223 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH--
Confidence            3689999998 99999999999999997665554444333 445555321 11    1111     236777665532  


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                        . . -...++.++++..+|.+|.
T Consensus       224 --~-~-~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         224 --K-T-LAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             --H-H-HHHHHHHhhcCCEEEEEee
Confidence              1 1 2355677788888888764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.43  E-value=0.18  Score=48.00  Aligned_cols=30  Identities=33%  Similarity=0.449  Sum_probs=23.7

Q ss_pred             EEEEEccChHHHHHHHHHccC----CCeEEEEeC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPY----KVSKFLYTS   73 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~----G~~vv~~~~   73 (274)
                      +|||+|+|+||+.+.+.|...    +++++...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998754    366665554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.43  E-value=0.41  Score=45.59  Aligned_cols=84  Identities=15%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCC-CeEEEE-eCCCCChh-Hh-h--c-----------CCcc--cCHHHHhcccCEEEE
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYK-VSKFLY-TSRSKKPE-AD-K--R-----------GAEH--TNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~-~~r~~~~~-a~-~--~-----------g~~~--~sl~ell~~aDvVil  102 (274)
                      .+|+|+| .|.+|+.+++.|.... ++.+.+ .++..... .. .  .           ....  .+.++ +.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence            6899998 8999999999998654 344444 22211111 11 0  0           0111  23444 478999999


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ++|... ...+.  +.+  .+.|..+|+.+
T Consensus        83 a~p~~~-s~~~~--~~~--~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDV-AGEVE--EEF--AKAGKPVFSNA  107 (349)
T ss_pred             eCChhH-HHHHH--HHH--HHCCCEEEECC
Confidence            999642 22222  112  14577777776

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=92.42  E-value=0.36  Score=38.71  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH-HHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA-RLES  121 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~-~l~~  121 (274)
                      |+|.|+|-|.|+..+++.++.+|.+.+..+......          +.  -...||-+.. +|..+.....++.+ .++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~----------s~--~~~~ad~~~~-~~~~~~~~~yl~~e~I~~i   69 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTV----------ST--HVDMADEAYF-EPPGPSPESYLNIEAIIDI   69 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTT----------GH--HHHHSSEEEE-EESSSGGGTTTSHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcc----------cc--ccccccccee-cCcchhhhhhccHHHHhhH
Confidence            789999999999999999999999877665433211          11  1233565543 33222222333322 1111


Q ss_pred             C-CCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         122 M-KPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       122 m-k~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      . +.|+..+--|-|.+-...+|.+.+.+.|+.|+.
T Consensus        70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiG  104 (110)
T PF00289_consen   70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIG  104 (110)
T ss_dssp             HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESS
T ss_pred             hhhhcCcccccccchhHHHHHHHHHHHHCCCEEEC
Confidence            1 347888889999999999999998888988875

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK12862 malic enzyme; Reviewed

Probab=92.42  E-value=2.1  Score=45.30  Aligned_cols=95  Identities=15%  Similarity=0.304  Sum_probs=69.1

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCCe---EEEEeC-------CCC-Chh-----HhhcCCcccCHHHHhcccC
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS---KFLYTS-------RSK-KPE-----ADKRGAEHTNIDDLCKQSD   98 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~---vv~~~~-------r~~-~~~-----a~~~g~~~~sl~ell~~aD   98 (274)
                      ..|+.|...+|.|.|.|.-|-.+|+.|...|.+   .+.+|+       |.. -..     +...  ...+|.|+++.+|
T Consensus       186 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~  263 (763)
T PRK12862        186 LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGAD  263 (763)
T ss_pred             HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCC
Confidence            357889999999999999999999999988883   344442       211 011     1111  2248999999999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      +++=+-     +.++++++.++.|.+..++.=.|.-..
T Consensus       264 v~iG~s-----~~g~~~~~~v~~M~~~piifalsNP~~  296 (763)
T PRK12862        264 VFLGLS-----AAGVLKPEMVKKMAPRPLIFALANPTP  296 (763)
T ss_pred             EEEEcC-----CCCCCCHHHHHHhccCCEEEeCCCCcc
Confidence            887632     137889999999998899888887554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.39  E-value=0.62  Score=47.89  Aligned_cols=68  Identities=19%  Similarity=0.286  Sum_probs=50.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T   88 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~   88 (274)
                      ..|++|.|||.|..|...|..|+..|.++++|+.....                     .. ....|+..         .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            46999999999999999999999999988888755420                     11 23445431         2


Q ss_pred             CHHHHhcccCEEEEcCCCC
Q psy3240          89 NIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        89 sl~ell~~aDvVil~lPlt  107 (274)
                      +++++....|.|++++-..
T Consensus       388 ~~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHHHhcCCEEEEeCCCC
Confidence            5667777899999988654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.35  E-value=0.66  Score=41.85  Aligned_cols=63  Identities=13%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             EEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-----cc---cCHHHHh------cc-cCEEEEcCCCC
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-----EH---TNIDDLC------KQ-SDFIIITSALT  107 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-----~~---~sl~ell------~~-aDvVil~lPlt  107 (274)
                      +|.|.|. |.+|+.+++.|...|.++.+..++..+...  .++     ..   .++.+++      +. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~--~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG--PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC--CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4778886 999999999999999977777655432211  111     11   2455666      45 89999888754


Q ss_pred             c
Q psy3240         108 P  108 (274)
Q Consensus       108 ~  108 (274)
                      .
T Consensus        79 ~   79 (285)
T TIGR03649        79 P   79 (285)
T ss_pred             C
Confidence            3

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=92.34  E-value=0.27  Score=45.00  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=66.1

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcccCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +|-+..-..+||||.|..|+....+...-++..-....++....   +...+....+++.-.+..+++++.+|..    -
T Consensus         4 ~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~----~   79 (289)
T COG5495           4 DGLRPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA----L   79 (289)
T ss_pred             cCccceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH----H
Confidence            34556668899999999999988888777774333344443222   2223333445555566678888888863    1


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      +..-..-..-+||++++.+|=   .+...+.+-+...|+
T Consensus        80 ~s~vaa~~~~rpg~iv~HcSg---a~~~~il~~~gr~g~  115 (289)
T COG5495          80 YSGVAATSLNRPGTIVAHCSG---ANGSGILAPLGRQGC  115 (289)
T ss_pred             HHHHHHhcccCCCeEEEEccC---CCchhhhhhhhhcCC
Confidence            222233344579999999964   233444444444343

>PLN02427 UDP-apiose/xylose synthase

Probab=92.33  E-value=0.44  Score=45.25  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=47.5

Q ss_pred             CCCCCCCCCEEEEEc-cChHHHHHHHHHccC-CCeEEEEeCCCCChh-Hhhc-------CCcc--------cCHHHHhcc
Q psy3240          35 MCGPALQNSTVGIVG-CGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKR-------GAEH--------TNIDDLCKQ   96 (274)
Q Consensus        35 ~~g~~L~gktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~-------g~~~--------~sl~ell~~   96 (274)
                      +.|+.++.++|.|.| .|-||+.+++.|... |.++++.+++..... ....       +++.        .++.++++.
T Consensus         7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   86 (386)
T PLN02427          7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM   86 (386)
T ss_pred             CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence            457788889999999 599999999999887 587777765432211 1111       1211        135667888


Q ss_pred             cCEEEEcC
Q psy3240          97 SDFIIITS  104 (274)
Q Consensus        97 aDvVil~l  104 (274)
                      +|+|+-+.
T Consensus        87 ~d~ViHlA   94 (386)
T PLN02427         87 ADLTINLA   94 (386)
T ss_pred             CCEEEEcc
Confidence            99887665

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=92.32  E-value=0.85  Score=41.90  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcCCccc-C--------HHHHhc--ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRGAEHT-N--------IDDLCK--QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g~~~~-s--------l~ell~--~aDvVil~lPl  106 (274)
                      ..|++|.|.|.|.+|+.+++.++..| .+++.......+.. ..+.|+... +        +.++..  ..|+++-+...
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~  245 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGS  245 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCC
Confidence            35899999999999999999999998 76655544333322 444554221 1        222332  37888887653


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .+     ...+.++.++++..++.++..+
T Consensus       246 ~~-----~~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         246 DE-----TLALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             HH-----HHHHHHHHhhcCCEEEEEcCCC
Confidence            11     1235567788888888887544

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.30  E-value=0.4  Score=49.33  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T   88 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~   88 (274)
                      -.|++|+|||.|..|.+.|..|+..|.++++++.....                     .. ....|++.         .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            46899999999999999999999999988888754320                     11 23445532         2


Q ss_pred             CHHHHhcccCEEEEcCCC
Q psy3240          89 NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        89 sl~ell~~aDvVil~lPl  106 (274)
                      +++++....|.|++++-.
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            456666789999998754

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=92.28  E-value=0.71  Score=41.54  Aligned_cols=89  Identities=20%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCcc------cCHH----HHh--cccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEH------TNID----DLC--KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~------~sl~----ell--~~aDvVil~lP  105 (274)
                      -.|.+|.|.|.|.+|+.+++.++..|++ +++..+...+.. ....|+..      .++.    ++.  ...|+++-+..
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g  207 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG  207 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            3688999999999999999999999997 444433322222 33444421      1222    222  23788887654


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...     .....+..|+++..+++++.
T Consensus       208 ~~~-----~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         208 HQW-----PLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CHH-----HHHHHHHHhccCCEEEEEcc
Confidence            211     22345677888888888864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=92.21  E-value=0.6  Score=44.10  Aligned_cols=86  Identities=26%  Similarity=0.356  Sum_probs=61.3

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-C-----HHHHhc------ccCEEEEcCCCC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-N-----IDDLCK------QSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-s-----l~ell~------~aDvVil~lPlt  107 (274)
                      |.+|.|.| .|.+|....+.++++|.++++...++.+.+ +++.|+..+ +     +.+.++      ..|+|+-++-. 
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~-  221 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGG-  221 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCH-
Confidence            99999999 899999999999999965666666655444 667777432 2     444332      58999996642 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       ++   + .+.+..|+++..++.++.
T Consensus       222 -~~---~-~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         222 -DT---F-AASLAALAPGGRLVSIGA  242 (326)
T ss_pred             -HH---H-HHHHHHhccCCEEEEEec
Confidence             22   2 346777888888877764

>PRK14852 hypothetical protein; Provisional

Probab=92.20  E-value=0.94  Score=49.00  Aligned_cols=207  Identities=16%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil  102 (274)
                      ..|+.++|+|||+|-+|..+|+.|...|...+. .|...-...  -.       ..|...+     .+.++=..++|.+.
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            469999999999999999999999988875544 443222111  11       1122111     22333344555555


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcH-HHHHhhhhhhhheeehhhcccccccceeecCCCcccCcccee
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ-EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAF  181 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde-~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (274)
                      ..-.++++.    .++++.   --++||+.-.-..+. ..+.+...+.++-++..-.-.             +++....|
T Consensus       408 ~~~I~~en~----~~fl~~---~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G-------------~~g~v~v~  467 (989)
T PRK14852        408 PEGVAAETI----DAFLKD---VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG-------------YSCALLVF  467 (989)
T ss_pred             ecCCCHHHH----HHHhhC---CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc-------------cCeeEEEE
Confidence            444333321    233332   347777654322222 233333344455444421100             11111111


Q ss_pred             eeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH
Q psy3240         182 IFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN  261 (274)
Q Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~  261 (274)
                      .+    -|-...++|-++-..-...|-+. .++   ...|-|..-..+...++-+.=+.+-++.-+..-.+..++...++
T Consensus       468 ~p----~~~~~~~~f~~~~~~p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~k  539 (989)
T PRK14852        468 MP----GGMNFDSYFGIDDDTPPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVR  539 (989)
T ss_pred             cC----CCCCHHHhCCCCCCCchHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHH
Confidence            11    11112222222111011122222 222   22333333344555666666567777777788888889999999


Q ss_pred             HHcCCCCCCcc
Q psy3240         262 TFHNKPMIYEV  272 (274)
Q Consensus       262 ~~~g~~~~~~v  272 (274)
                      ++-|+-....+
T Consensus       540 illg~~~~~~~  550 (989)
T PRK14852        540 ILLHRRGIRPV  550 (989)
T ss_pred             HHhCCCccccC
Confidence            99998444433

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.20  E-value=0.4  Score=41.63  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ++.||++.|.| .|.||+.+|+.|...|+++++.+++
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~   38 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQ   38 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            58899999998 4899999999999999977666554

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.20  E-value=0.6  Score=44.59  Aligned_cols=84  Identities=17%  Similarity=0.271  Sum_probs=49.0

Q ss_pred             CEEEEEcc-ChHHHHHHHHHcc--CCCeEE-EEeCCCCChh-HhhcC--Ccc--cCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIP--YKVSKF-LYTSRSKKPE-ADKRG--AEH--TNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~--~G~~vv-~~~~r~~~~~-a~~~g--~~~--~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      .+|+|+|. |.+|+.+.+.|..  +-...+ ...++..... ....+  ...  .+.++ ++.+|++++++|. .....+
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~~   82 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRSF   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHHH
Confidence            68999995 9999999999984  333222 2222221111 11111  111  23333 5889999999994 233332


Q ss_pred             ccHHHHhcCCCCcEEEEcC
Q psy3240         114 INRARLESMKPGAILINTS  132 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~  132 (274)
                      +. +.   .+.|..+||.|
T Consensus        83 v~-~~---~~~G~~VIDlS   97 (336)
T PRK05671         83 AE-KA---RAAGCSVIDLS   97 (336)
T ss_pred             HH-HH---HHCCCeEEECc
Confidence            21 12   24688999998

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.19  E-value=0.39  Score=44.96  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             CCCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh----cCCcc-----c---CHHHHhcccCEE
Q psy3240          36 CGPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK----RGAEH-----T---NIDDLCKQSDFI  100 (274)
Q Consensus        36 ~g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~----~g~~~-----~---sl~ell~~aDvV  100 (274)
                      .|++-++++|.|.| .|-||+.+++.|...|.++++.++......  ...    ..+..     .   .++++++..|+|
T Consensus         4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            46888999999999 699999999999999997776654432211  111    11111     1   345667788988


Q ss_pred             EEcCCC
Q psy3240         101 IITSAL  106 (274)
Q Consensus       101 il~lPl  106 (274)
                      +-+...
T Consensus        84 ih~A~~   89 (353)
T PLN02896         84 FHVAAS   89 (353)
T ss_pred             EECCcc
Confidence            776643

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.17  E-value=0.51  Score=43.18  Aligned_cols=89  Identities=21%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHH-HhcccCEEEEcCCCCcccHHhcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDD-LCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~e-ll~~aDvVil~lPlt~~T~~li~  115 (274)
                      -..|.+|.|.|.|.+|+.+++.++..|.+++...+...+.. +.+.|+... +..+ .-+..|+++.+.+..    . .-
T Consensus       165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~----~-~~  239 (329)
T cd08298         165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG----A-LV  239 (329)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH----H-HH
Confidence            34588999999999999999999999996655554443333 455565332 2221 113467777654432    1 22


Q ss_pred             HHHHhcCCCCcEEEEcC
Q psy3240         116 RARLESMKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~mk~gailINv~  132 (274)
                      .+.++.++++..++..+
T Consensus       240 ~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         240 PAALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHHHhhcCCEEEEEc
Confidence            45677788888888765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK06153 hypothetical protein; Provisional

Probab=92.06  E-value=0.074  Score=51.78  Aligned_cols=36  Identities=22%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~   73 (274)
                      ..|++++|+|||+|-+|..++..|...|...+ ++|.
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            47999999999999999999999999998554 4443

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=92.04  E-value=0.76  Score=42.68  Aligned_cols=88  Identities=17%  Similarity=0.248  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCccc------CH----HHHhc--ccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHT------NI----DDLCK--QSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~------sl----~ell~--~aDvVil~lP  105 (274)
                      ..|.+|.|.|.|.+|+.+++.++..|+++++...+.... . ..+.|+...      ++    .++..  ..|+++-+++
T Consensus       173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g  252 (350)
T cd08256         173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATG  252 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence            358899999999999999999999998665554443322 2 344554321      12    12222  3799988776


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ...    .+ ...++.++++..+|+++
T Consensus       253 ~~~----~~-~~~~~~l~~~G~~v~~g  274 (350)
T cd08256         253 HPS----AV-EQGLNMIRKLGRFVEFS  274 (350)
T ss_pred             ChH----HH-HHHHHHhhcCCEEEEEc
Confidence            321    12 24577788888999886

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.98  E-value=0.61  Score=40.63  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +++|+++.|.|. |.||+.+|+.|.+.|+++++.+++.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999997 9999999999999999776665543

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=91.96  E-value=0.65  Score=45.38  Aligned_cols=65  Identities=14%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             CCCCCEEEEEcc-----C---hHHHHHHHHHccCCCeEEEEeCCCCC--hh--------HhhcCCc--c-cCHHHHhccc
Q psy3240          39 ALQNSTVGIVGC-----G---RIGLSVLEKLIPYKVSKFLYTSRSKK--PE--------ADKRGAE--H-TNIDDLCKQS   97 (274)
Q Consensus        39 ~L~gktVGIIGl-----G---~IG~~iA~~L~~~G~~vv~~~~r~~~--~~--------a~~~g~~--~-~sl~ell~~a   97 (274)
                      .+.|++|+|+|-     |   ++.++++..+..+|+++.+..++.-.  +.        +...|..  . .+++++++.+
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            488999999985     5   67799999999999987777665321  22        1223432  2 3899999999


Q ss_pred             CEEEEc
Q psy3240          98 DFIIIT  103 (274)
Q Consensus        98 DvVil~  103 (274)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999985

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.91  E-value=0.61  Score=41.15  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ++.||++.|.|. |.||+.+|+.|...|+++++.+++
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            688999999995 999999999999999976665543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=91.86  E-value=0.37  Score=43.82  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lP  105 (274)
                      ++|.|.| .|.||+.+++.|...|.++++.+++..... ....++..        .++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4789998 599999999999999997777776543321 11122321        135567788999887764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.86  E-value=0.66  Score=42.46  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPY   64 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~   64 (274)
                      -+..+|.|||+|.+|..+++.|...
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~   33 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARL   33 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHc
Confidence            3678999999999999999999765

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=91.81  E-value=0.71  Score=42.15  Aligned_cols=65  Identities=12%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-H---hh-c----CCc--------ccCHHHHhcccCEEEE
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A---DK-R----GAE--------HTNIDDLCKQSDFIII  102 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a---~~-~----g~~--------~~sl~ell~~aDvVil  102 (274)
                      +|++|.|.| .|-||+.+++.|...|.++++..++..... .   .. .    .+.        ..+++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 699999999999999997766655433211 1   00 0    111        1146677888998877


Q ss_pred             cCC
Q psy3240         103 TSA  105 (274)
Q Consensus       103 ~lP  105 (274)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            664

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=91.79  E-value=0.93  Score=41.87  Aligned_cols=90  Identities=18%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------CHHH----Hhc-ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------NIDD----LCK-QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------sl~e----ll~-~aDvVil~lPl  106 (274)
                      -.|++|.|.|.|.+|+.+++.++..|+++++...+..+.. ..+.|+...       ++.+    +.. ..|+++-++..
T Consensus       164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  243 (345)
T cd08260         164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI  243 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC
Confidence            3578999999999999999999999997666655444333 444555211       1111    111 47888877652


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      . .   . -...++.|+++..+++++..
T Consensus       244 ~-~---~-~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         244 P-E---T-CRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             H-H---H-HHHHHHHhhcCCEEEEeCCc
Confidence            1 1   1 22456778888899988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.75  E-value=0.95  Score=42.63  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHh-----cccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLC-----KQSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell-----~~aDvVil~lPlt  107 (274)
                      .|++|.|.|.|.+|..+++.++..|.+ +++.+....+.. +.+.|+...      ++.+.+     ...|+|+-++...
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~  265 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP  265 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence            589999999999999999999999995 444444333333 344554221      222222     3478888877532


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      +    .+ ...++.++++..+|.++..
T Consensus       266 ~----~~-~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         266 A----VI-EQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             H----HH-HHHHHHhccCCEEEEeCcC
Confidence            1    12 3567778888899988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=91.75  E-value=0.62  Score=39.39  Aligned_cols=63  Identities=10%  Similarity=0.020  Sum_probs=42.1

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHH---HHhcccCEEEEcCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NID---DLCKQSDFIIITSAL  106 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~---ell~~aDvVil~lPl  106 (274)
                      ++.|+|.|..|+.+++.|+..|++++.+-+...... ..-.|.... +.+   +..++.+.++++++.
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCC
Confidence            378999999999999999999998777655433221 222344332 333   334456788888873

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>KOG0022|consensus

Probab=91.62  E-value=0.27  Score=46.84  Aligned_cols=48  Identities=29%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCCCCChh-HhhcCCcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSRSKKPE-ADKRGAEH   87 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r~~~~~-a~~~g~~~   87 (274)
                      =.|++++|+|+|.+|.++++-++++|+..++ .|-+..+-+ ++++|++.
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            3689999999999999999999999986554 555544444 77888753

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.56  E-value=0.49  Score=42.12  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh--hcCCcc---------cCHHHHh-cccCEEEEc
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD--KRGAEH---------TNIDDLC-KQSDFIIIT  103 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~--~~g~~~---------~sl~ell-~~aDvVil~  103 (274)
                      ....+++|.|+|. |.||+.+++.|...|.++++..++..+.. ..  ..++..         .++.+.+ ..+|+|+.+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            4677899999995 99999999999988997666654433211 11  112221         1233445 578999987


Q ss_pred             CCC
Q psy3240         104 SAL  106 (274)
Q Consensus       104 lPl  106 (274)
                      .+.
T Consensus        93 ~g~   95 (251)
T PLN00141         93 TGF   95 (251)
T ss_pred             CCC
Confidence            664

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.52  E-value=1  Score=40.00  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCC------cccCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGA------EHTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~------~~~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||. |.+|+.+++-++..|.+++...+...+..+ ....+      ...++.+.+...|+|+.+.-..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            58999996 999999999999999988877766554432 11111      1124557888999999987654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.49  E-value=1.5  Score=45.39  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T   88 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~   88 (274)
                      -.+++|.|||.|..|...|..|+..|.++++++.....                     .. ....|++.         .
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv  270 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI  270 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence            46899999999999999999999999988888754321                     01 23345432         1


Q ss_pred             CHHHHhcccCEEEEcCCCC
Q psy3240          89 NIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        89 sl~ell~~aDvVil~lPlt  107 (274)
                      +++++....|.|++++-..
T Consensus       271 ~~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        271 TLEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             CHHHHHhhcCEEEEEcCCC
Confidence            3555556799999988654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.44  E-value=0.5  Score=45.77  Aligned_cols=84  Identities=19%  Similarity=0.303  Sum_probs=47.7

Q ss_pred             CEEEEEcc-ChHHHHHHH-HHccCCCe---EEEEeCCCCChhHhhc-CC--cccC-H-HHHhcccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGC-GRIGLSVLE-KLIPYKVS---KFLYTSRSKKPEADKR-GA--EHTN-I-DDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~-~L~~~G~~---vv~~~~r~~~~~a~~~-g~--~~~s-l-~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .+|||||. |..|+.+.+ .|..-.+.   ...+.+.........+ |.  ...+ . .+.++++|++++++|.. .++.
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~   80 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE   80 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence            47999996 999999998 66544443   3333332111111111 11  1112 1 24558899999999853 2322


Q ss_pred             hccHHHHhcC-CCC--cEEEEcC
Q psy3240         113 LINRARLESM-KPG--AILINTS  132 (274)
Q Consensus       113 li~~~~l~~m-k~g--ailINv~  132 (274)
                      +     .+.+ +.|  +++||.|
T Consensus        81 ~-----~~~~~~aG~~~~VID~S   98 (369)
T PRK06598         81 V-----YPKLRAAGWQGYWIDAA   98 (369)
T ss_pred             H-----HHHHHhCCCCeEEEECC
Confidence            2     2222 467  7799988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		3e-26
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-25
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-20
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-17
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-15
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-15
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-15
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-15
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		3e-15
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		4e-15
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		8e-15
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		7e-14
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		2e-13
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		4e-13
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		4e-13
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		4e-13
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		5e-13
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-13
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-13
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		1e-12
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		1e-12
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		1e-12
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		1e-12
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		8e-12
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		8e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		5e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		6e-11
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		6e-11
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		8e-11
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		5e-10
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		6e-10
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		7e-10
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		7e-10
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-09
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-09
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-09
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-09
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		7e-09
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		8e-09
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		8e-09
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		8e-09
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		1e-08
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		1e-08
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-08
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-08
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		3e-08
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-07
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-07
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		2e-07
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		5e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		9e-07
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		2e-06
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		2e-05

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 5/161 (3%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
           G W SW P ++CG  L  STVGI+G GRIG ++  +L P+ V +FLYT R  +P EA + 
Sbjct: 138 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 197
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            AE  +  +L  QSDFI++  +LTP T  L N+   + MK  A+ IN SRG +V+Q+ L 
Sbjct: 198 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLY 257
Query: 144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
             +A  ++ +  + VT+ + L   H + TL +     H+ +
Sbjct: 258 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 298

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
           G W SW P ++CG  L  STVGI+G GRIG ++  +L P+ V +FLYT R  +P EA + 
Sbjct: 136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            AE  +  +L  QSDFI++  +LTP T  L N+   +  K  A+ IN SRG +V+Q+ L 
Sbjct: 196 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLY 255
Query: 144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
             +A  ++ +  + VT+ + L   H + TL +     H+ +
Sbjct: 256 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 296

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 111/242 (45%), Gaps = 64/242 (26%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G WK+W P  + G  LQ  T+G+VG GRIG +V ++ + + + + +Y +R+ KP      
Sbjct: 127 GLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPLP---- 181
Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
               ++++L K++D + + + LTP+TH L+NR RL +MK GAIL+NT+RG LVD EAL++
Sbjct: 182 YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE 241
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
            +                            +GH                   +F A    
Sbjct: 242 AL----------------------------RGH-------------------LFGA---- 250
Query: 205 KAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
                   GLDV                N VI PHIGSA   TR+ MA +  +N++    
Sbjct: 251 --------GLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLE 302
Query: 265 NK 266
            +
Sbjct: 303 GR 304

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 24  RGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           RGEW+S A     F    +L    VGI+G G IG ++  +LIP+ V K  Y SR +K   
Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNV 183
Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           +K   A + +ID+L ++SD +I+   LT DT+H+IN  R++ ++ G  L+N  RG LVD+
Sbjct: 184 EKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDE 242
Query: 140 EALIDFI 146
           +A+ + I
Sbjct: 243 KAVTEAI 249

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
           G+++ W P F  G  L N+TVG +G G IGL++ ++L  +  +   +  ++   + ++R 
Sbjct: 129 GQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRL 187
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
           G+++ W P F  G  L N+TVG +G G IGL++ ++L  +  +   +  ++   + ++R 
Sbjct: 129 GQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRL 187
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
           G+++ W P F  G  L N+TVG +G G IGL++ ++L  +  +   + +++   + ++R 
Sbjct: 129 GKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRL 187
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
           G+++ W P F  G  L N+TVG +G G IGL++ ++L  +  +   + +++   + ++R 
Sbjct: 129 GKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRL 187
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
           G+++ W P F  G  L N+TVG +G G IGL+  ++L  +  +   + +++   + ++R 
Sbjct: 130 GQFRGWQPRFY-GTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRL 188
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A++
Sbjct: 189 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 248

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 9/173 (5%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG WK    +F          VGI+G GRIGL+V E+   +      Y SRSKKP  +  
Sbjct: 148 RGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSRSKKPNTNY- 203
Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              + ++ +L   SD +++   LTP+T H+INR  ++++ P  +LIN  RG  VD+  L+
Sbjct: 204 -TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELV 262
Query: 144 DFIADIRVISISMVTNEKH---LHRVFTLGDSFHKGHV-SAFIFIHMIMGDTV 192
             + + R+    +   E+      ++F L +     HV S  +    +M D V
Sbjct: 263 SALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
           +W  +   G  +   TVG+VG GRIG  V +++  +      Y        A + G E  
Sbjct: 129 TWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL 188
Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
           ++DDL  ++DFI +    TP+T  LI++  L   KPG I++N +RG LVD+ AL D I
Sbjct: 189 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 246

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
           +W  +   G  +   TVG+VG GRIG  V +++  +      Y        A + G E  
Sbjct: 128 TWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL 187
Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
           ++DDL  ++DFI +    TP+T  LI++  L   KPG I++N +RG LVD+ AL D I
Sbjct: 188 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 245

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 27  WKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR-SKKPEADKRG 84
           W  W P  + G  L N T+GI G G IG ++ ++   + +   +  T R S   EA  + 
Sbjct: 131 WPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQA 190
Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
             H ++D L   S F  + +  TP+T +  N+A ++S+  GAI++NT+RG LVD E ++
Sbjct: 191 TFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVV 249

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 25  GEWKSWA----PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           GEWK       P +  G  +   T+GI+G GRIG ++ ++   + + + LY SR++K E 
Sbjct: 129 GEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEEV 187
Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           ++   AE   ++DL ++SDF+++   LT +T+HLIN  RL+ MK  AILIN +RG++VD 
Sbjct: 188 ERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDT 247
Query: 140 EALIDFIAD 148
            AL+  + +
Sbjct: 248 NALVKALKE 256

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           WAP    G  +++  VG+VG G IG  V  +++    +K +     K PE +K+G    +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDS 192
Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149
           +DDL KQ+D I +     P   H+IN   +  MK G +++N SRG+LVD +A+I  +   
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSG 252
Query: 150 RVISISMVTNEKHL 163
           ++    M T E  +
Sbjct: 253 KIFGFVMDTYEDEV 266

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 45  VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQSDFII 101
           VG V  GRIGL VL  L P+ +    YT R + PEA ++      H   +D+    D + 
Sbjct: 195 VGTVAAGRIGLRVLRLLAPFDM-HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVT 253
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
           +   L P+T H+IN   L+  K GA L+NT+RG+L D++A++  +   R+
Sbjct: 254 LNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRL 303

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
           L+   VG V  GRIGL+VL +L P+ V    YT R + PE+ ++      H   +D+   
Sbjct: 190 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 248
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
            D + +   L P+T H+IN   L+  K GA ++NT+RG+L D++A+   +   R+
Sbjct: 249 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 303

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
           L+   VG V  GRIGL+VL +L P+ V    YT R + PE+ ++      H   +D+   
Sbjct: 190 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 248
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
            D + +   L P+T H+IN   L+  K GA ++NT+RG+L D++A+   +   R+
Sbjct: 249 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 303

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 45  VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQSDFII 101
           VG V  GRIGL VL  L P+ +    YT R + PEA ++      H   +D+    D + 
Sbjct: 194 VGTVAAGRIGLRVLRLLAPFDM-HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVT 252
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
           +   L P+T H+IN   L+  K GA L+NT+RG+L D++A++  +   R+
Sbjct: 253 LNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRL 302

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
           L+   VG V  GRIGL+VL +L P+ V    YT R + PE+ ++      H   +D+   
Sbjct: 189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 247
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
            D + +   L P+T H+IN   L+  K GA ++NT+RG+L D++A+   +   R+
Sbjct: 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 302

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 25  GEWKSWA----PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           GEWK       P +  G  +   T+GI+G GRIG ++ ++   +   + LY SR++K E 
Sbjct: 129 GEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFN-XRILYYSRTRKEEV 187
Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           ++   AE   ++DL ++SDF+++   LT +T+HLIN  RL+  K  AILIN +RG++VD 
Sbjct: 188 ERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDT 247
Query: 140 EALIDFIAD 148
            AL+  + +
Sbjct: 248 NALVKALKE 256

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G W  W P  + G  L    +GI G GRIG ++  +   + ++   Y +R++   A + G
Sbjct: 156 GSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLA-IHYHNRTRLSHALEEG 214
Query: 85  A-EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           A  H  +D L   SD  +I +   P+    ++  R+  +  GA++IN SRG L++ +ALI
Sbjct: 215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALI 274
Query: 144 DFI 146
           + +
Sbjct: 275 EAL 277

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQ 96
           ++  T+  +G GRIG  VLE+L+P+   + LY      P+   +K GA    NI++L  Q
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 222
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
           +D + + + L   T  LIN+  L   K GA L+NT+RG +
Sbjct: 223 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 262

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           L   T+G++G GRIG  V    + +   K L     K+ +  ++G  +T++D+L K+SD 
Sbjct: 139 LNRLTLGVIGTGRIGSRVAXYGLAFG-XKVLCYDVVKREDLKEKGCVYTSLDELLKESDV 197
Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
           I +    T +THH IN  R+   K G  LINT+RG++VD +AL
Sbjct: 198 ISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDAL 240

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQ 96
           ++  T+  +G GRIG  VLE+L+P+   + LY      P+   +K GA    NI++L  Q
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 221
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
           +D + + + L   T  LIN+  L   K GA L+NT+RG +
Sbjct: 222 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 261

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           WAP    G  +++  VG+VG G IG  V  +++    +K +     + PE +K+G    +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           +DDL KQ+D I +     P   H+IN   +  MK   +++N SRG LVD +A+I
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           WAP    G  +++  VG+VG G IG  V  +++    +K +     + PE +K+G    +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           +DDL KQ+D I +     P   H+IN   +  MK   +++N SRG LVD +A+I
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           +GEW      +     L+  T+G VG GRIG  +L++L P+  +   +      PE +K 
Sbjct: 153 KGEWNVAGIAYRA-YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE 211
Query: 84  -GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
            GA+   +++++  + D I+I   LT  T  + N+  +  +K G +++N +RG +++++A
Sbjct: 212 TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 142 LIDFI 146
           ++D +
Sbjct: 272 VVDAV 276

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           +GEW      +     L+  T+G VG GRIG  +L++L P+  +   +      PE +K 
Sbjct: 147 KGEWNVAGIAYRA-YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE 205
Query: 84  -GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
            GA+   +++++  + D I+I   LT  T  + N+  +  +K G +++N +RG +++++A
Sbjct: 206 TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 142 LIDFI 146
           ++D +
Sbjct: 266 VVDAV 270

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQ 96
           G  L   TVG++G G IG   ++    +      Y     K   D    ++ +++DL KQ
Sbjct: 140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK--GDHPDFDYVSLEDLFKQ 197
Query: 97  SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156
           SD I +         H+IN A    MKPGAI+INT+R  L+D +A++  +   ++  + +
Sbjct: 198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGI 257
Query: 157 VTNEKHLHRVFTL 169
            T E     +  L
Sbjct: 258 DTYEYETEDLLNL 270

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 29  SWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPEAD 81
           +W  N +    + N TVG++G G IG +V E       K+I Y V+          PE +
Sbjct: 136 TWPSNLISN-EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY--------NPEFE 186
Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
                +T+ D + K++D + + + L P T ++I   +L+ MK  A LIN +RG+LVD  A
Sbjct: 187 PF-LTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGA 245
Query: 142 LIDFIAD 148
           LI  + D
Sbjct: 246 LIKALQD 252

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
           ++  T+GI+G GR+G +V  +   +  +   Y            G +  + + DL   SD
Sbjct: 166 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSD 225
Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            + +   L    HHLIN   ++ M+ GA L+NT+RG LVD++AL   + + R+   ++  
Sbjct: 226 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 285
Query: 159 NE 160
           +E
Sbjct: 286 HE 287

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 32  PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-AEHTNI 90
           PNF  G  L+  T+GI G G+IG  V      + ++  ++   + K  A   G A   + 
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESK 209
Query: 91  DDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           D L +QSD + +   L  +T  +I  A L  MKP A+ +NTSR +LV++  ++
Sbjct: 210 DALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMV 262

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
           ++  T+GI+G GR+G +V  +   +  +   Y            G +  + + DL   SD
Sbjct: 169 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            + +   L    HHLIN   ++ M+ GA L+NT+RG LVD++AL   + + R+   ++  
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
           +E
Sbjct: 289 HE 290

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
           ++  T+GI+G GR+G +V  +   +  +   Y            G +  + + DL   SD
Sbjct: 169 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            + +   L    HHLIN   ++ M+ GA L+NT+RG LVD++AL   + + R+   ++  
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
           +E
Sbjct: 289 HE 290

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSD 98
           ++  T+G++G GR G +V  +   +  S   Y    +       G +    + DL  QSD
Sbjct: 150 IRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSD 209
Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            + +   L    HHLIN   ++ M+ GA L+N +RG LVD++AL   + + R+   ++  
Sbjct: 210 CVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDV 269
Query: 159 NE 160
           +E
Sbjct: 270 HE 271

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 16  YVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTS 73
           Y S  ++  G +K      + G  L   T+GIVG GRIG  + ++   +  KV    Y  
Sbjct: 121 YTSMALAKSGIFKK-----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV--LAYDI 173
Query: 74  RSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR 133
              + +A+K  A+  ++++L K SD I +   ++ D   +I+  + E MK   I++NTSR
Sbjct: 174 LDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSR 233
Query: 134 GQLVDQEALIDFIADIRV 151
              V+ +AL+D+I   +V
Sbjct: 234 AVAVNGKALLDYIKKGKV 251

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 34  FMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDL 93
           FM    ++N TVG+VG GRIG    +  I + +   +      + +  +      ++D++
Sbjct: 138 FMFSKEVRNCTVGVVGLGRIGRVAAQ--IFHGMGATVIGEDVFEIKGIEDYCTQVSLDEV 195
Query: 94  CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
            ++SD I I +    +   ++ R  L+ MK GAIL+N +RGQLVD EA+I+ +
Sbjct: 196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 69  FLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL 128
            LY     +  A +   +  +++ L K+SD + I   L   T+HLIN  RL+ MK  AIL
Sbjct: 169 LLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAIL 228
Query: 129 INTSRGQLVDQEALIDFIAD 148
           INTSRG +VD  AL+  + +
Sbjct: 229 INTSRGPVVDTNALVKALKE 248

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
           ++  T+GI+G  R+G +V  +   +  +   Y            G +  + + DL   SD
Sbjct: 169 IRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99  FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
            + +   L    HHLIN   ++ M+ GA L+NT+RG LVD++AL   + + R+   ++  
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
           +E
Sbjct: 289 HE 290

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50  CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
            G +GL  ++K I  K    L      Y       E +K  GAE  + +++L ++SD + 
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
           ++      THHLI+ A   +MKPG+ ++NT+RG ++ Q+ALI  +   +++S  +  +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50  CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
            G +GL  ++K I  K    L      Y       E +K  GAE  + +++L ++SD + 
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
           ++      THHLI+ A   +MKPG+ ++NT+RG ++ Q+ALI  +   +++S  +  +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50  CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
            G +GL  ++K I  K    L      Y       E +K  GAE  + +++L ++SD + 
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
           ++      THHLI+ A   +MKPG+ ++NT+RG ++ Q+ALI  +   +++S  +  +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
           RG W   A         +   +GI+G G IG  L +L + +   V  + Y   +K P  +
Sbjct: 136 RGVWNKLAAGSFEA---RGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 190
Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
               +H  + DL   SD + +     P T +++    +  MKPG++LIN SRG +VD  A
Sbjct: 191 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
           L D +A
Sbjct: 249 LADALA 254

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
           RG W   A         +   +GI+G G IG  L +L + +   V  + Y   +K P  +
Sbjct: 136 RGVWNKLAAGSFEA---RGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 190
Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
               +H  + DL   SD + +     P T +++    +  MKPG++LIN SRG +VD  A
Sbjct: 191 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
           L D +A
Sbjct: 249 LADALA 254

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 20  PVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
           P S       W    +    ++  T+GIVG G IG  V        ++   Y +  K   
Sbjct: 134 PRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY 193
Query: 80  ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
            + + A   ++D+L K SD + +    +  T  LI  A+L  MK GA LIN +RG  VD 
Sbjct: 194 GNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL 251
Query: 140 EALIDFIAD 148
           EAL   + +
Sbjct: 252 EALAKVLQE 260

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
           RG W   A         +   +GI+G G IG  L +L + +   V  + Y   +K P  +
Sbjct: 135 RGVWNKLAAGSF---EARGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 189
Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
               +H  + DL   SD + +     P T +++    +  MKPG++LIN SRG +VD  A
Sbjct: 190 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 247
Query: 142 LIDFIA 147
           L D +A
Sbjct: 248 LCDALA 253

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT--NIDDLC 94
           G +L++ T+GIVG G +G  +  +L    +   L       P    RG E     +D+L 
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC-----DPPRAARGDEGDFRTLDELV 168
Query: 95  KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           +++D +   + L  D    T HL +   +  +KPGAILIN  RG +VD  AL+
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL 221

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G+W+     FM G  L   T+GI+G GRIG  V  ++  + +    Y        +   G
Sbjct: 151 GKWER--KKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207
Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
            +   ++++    DFI + + L P T  L+N       K G  ++N +RG +VD+ AL+
Sbjct: 208 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALL 266

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G W +       G + +   +G++G G+IG ++  +   +  S   Y +RS     D   
Sbjct: 155 GRWAA-GEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXS-VRYWNRSTLSGVDW-- 210
Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
             H +  DL + SD + +  A +  T ++++ + L+++ P  I++N +RG +VD++ALI+
Sbjct: 211 IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIE 270
Query: 145 FI--ADIRVISISMVTNEKHLHRVF 167
            +    I    + +  NE  +   F
Sbjct: 271 ALKSGTIAGAGLDVFVNEPAIRSEF 295

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 62/124 (50%)
Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
           +  S +GIVG G +G ++   L  ++    ++     +   ++ G E  +++D+  +SDF
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDF 233
Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTN 159
           I + +A+T +    +      S + GA  I  SR  +VD +AL   ++   +++ S V  
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAASDVYP 293
Query: 160 EKHL 163
           E+ L
Sbjct: 294 EEPL 297

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
           RG W   A         +   +GI+G G IG  L +L + +   V  + Y   +K P  +
Sbjct: 136 RGVWNKLAAGSF---EARGKKLGIIGYGHIGTQLGILAESLGXYV--YFYDIENKLPLGN 190
Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
               +H  + DL   SD + +     P T +      +   KPG++LIN SRG +VD  A
Sbjct: 191 ATQVQH--LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
           L D +A
Sbjct: 249 LCDALA 254

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 39  ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KRGAEHTNIDDLCKQS 97
            L+  T+ I+G G IG  +      + + K L  SRS +  A   +  +   ++ +  Q+
Sbjct: 137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERAGFDQVYQLPALNKMLAQA 195
Query: 98  DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV 157
           D I+     T +THHL   +R E  KPGAIL N  RG  +++    D +  +R   + M 
Sbjct: 196 DVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEG---DLLTALRTGKLGMA 252

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 45  VGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIII 102
           +GI+G G IG  L +L + +   V  + Y   +K P  +    +H  + DL   SD + +
Sbjct: 148 LGIIGYGHIGTQLGILAESLGXYV--YFYDIENKLPLGNATQVQH--LSDLLNXSDVVSL 203
Query: 103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
                P T +      +   KPG++LIN SRG +VD  AL D +A
Sbjct: 204 HVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALA 248

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 79  EADKRGAEHTNIDDLCKQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRG 134
           +A +   E  +++ L  ++D I + + L  D    T HL++  RL +++PG  L+N SRG
Sbjct: 150 QAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209
Query: 135 QLVDQEAL 142
            +VD +AL
Sbjct: 210 AVVDNQAL 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	7e-60
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	5e-59
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	7e-55
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-54
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-53
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-31
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	9e-53
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	3e-49
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-28
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	5e-49
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	2e-25
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	8e-49
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	4e-48
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	4e-48
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	2e-27
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	8e-47
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	8e-28
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	5e-45
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-44
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-40
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-39
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	5e-21
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	2e-39
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-21
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-39
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-20
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-37
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	6e-37
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-36
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	4e-36
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	3e-34
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-20
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	7e-34
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	6e-30
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	9e-29
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	4e-28
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-27
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-19
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	7e-27
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	3e-25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-12
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-25
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	9e-14
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	4e-04

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  194 bits (494), Expect = 7e-60
 Identities = 58/247 (23%), Positives = 90/247 (36%), Gaps = 63/247 (25%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
           +G W   A        L+   VG V  GRIGL+VL +L P+ V    YT R + PE    
Sbjct: 174 KGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEK 231

Query: 82  KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
           +     H   +D+    D + +   L P+T H+IN   L+  K GA ++NT+RG+L D++
Sbjct: 232 ELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRD 291

Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
           A+   +                             G +                      
Sbjct: 292 AVARALES---------------------------GRL---------------------- 302

Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
                     G   DV +P+P P D P   +    + PHI    +  +   A  T + + 
Sbjct: 303 ---------AGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILE 353

Query: 261 NTFHNKP 267
             F  +P
Sbjct: 354 CFFEGRP 360

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  189 bits (483), Expect = 5e-59
 Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 53/250 (21%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G+++ W P F  G  L N+TVG +G G IGL++ ++L  +  +   + +++   + ++R
Sbjct: 128 SGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR 186

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
            G       +L   SDFI++   L  DT HL+N   L  ++PGA+L+N  RG +VD+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246

Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
           +  +                             G +                     A+D
Sbjct: 247 LAALER---------------------------GQLGG------------------YAAD 261

Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
           V + +    A         L      L   N +  PHIGSA    R E+ R  AQNI+  
Sbjct: 262 VFEMEDWARADRPQQIDPAL------LAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQA 315

Query: 263 FHNKPMIYEV 272
              +  I  V
Sbjct: 316 LAGERPINAV 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  179 bits (456), Expect = 7e-55
 Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 64/253 (25%)

Query: 24  RGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
           RGEW+S A     F    +L    VGI+G G IG ++  +LIP+ V K  Y SR +K   
Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNV 183

Query: 81  DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
           +K   A + +ID+L ++SD +I+   LT DT+H+IN  R++ ++ G  L+N  RG LVD+
Sbjct: 184 EKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDE 242

Query: 140 EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199
           +A+ + I                             G +                     
Sbjct: 243 KAVTEAIKQ---------------------------GKLKG------------------- 256

Query: 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
                          DV   EP+            V+ PH     +E ++++     +N+
Sbjct: 257 ------------YATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENL 304

Query: 260 INTFHNKPMIYEV 272
           +     +     V
Sbjct: 305 LKVLRGEVPEDLV 317

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  177 bits (450), Expect = 2e-54
 Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 67/251 (26%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG++          P +Q   V ++G G IG  V + L      +    SR+ K      
Sbjct: 110 RGDYGRDVE----IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGP--- 161

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
                ++++  +++   +    L   T  L+    L  M   A+ +N  R +++D++ ++
Sbjct: 162 WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
             + +                                F                  ASDV
Sbjct: 222 RILKE---------------------------RPQFIF------------------ASDV 236

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETR--QEMARITAQNIIN 261
                                D+    L N V  P +       R  ++M     +N+I 
Sbjct: 237 WWG------------RNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLIT 284

Query: 262 TFHNKPMIYEV 272
                      
Sbjct: 285 YATGGRPRNIA 295

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  175 bits (447), Expect = 1e-53
 Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G W SW P ++CG  L  STVGI+G GRIG ++  +L P+ V +FLYT R  +PE    
Sbjct: 137 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 196

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
             AE  +  +L  QSDFI++  +LTP T  L N+   + MK  A+ IN SRG +V+Q+ L
Sbjct: 197 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL 256

Query: 143 ID 144
             
Sbjct: 257 YQ 258

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  118 bits (298), Expect = 1e-31
 Identities = 37/73 (50%), Positives = 45/73 (61%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L + KI  AGLDV  PEPLP + PLL L NCVILPHIGSA   TR  M+ + A N++ 
Sbjct: 258 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLA 317

Query: 262 TFHNKPMIYEVPL 274
               +PM  E+ L
Sbjct: 318 GLRGEPMPSELKL 330

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  174 bits (443), Expect = 9e-53
 Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 63/247 (25%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
           +GEW      +     L+  T+G VG GRIG  +L++L P+     LY  R +       
Sbjct: 147 KGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEK 204

Query: 82  KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
           + GA+   +++++  + D I+I   LT  T  + N+  +  +K G +++N +RG +++++
Sbjct: 205 ETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQ 264

Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
           A++D +                             GH+                      
Sbjct: 265 AVVDAVES---------------------------GHI---------------------- 275

Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
                     G   DV  P+P P D P   + N  + PH     I+ +   A  T   + 
Sbjct: 276 ---------GGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLE 326

Query: 261 NTFHNKP 267
             F  + 
Sbjct: 327 RYFKGED 333

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  164 bits (417), Expect = 3e-49
 Identities = 50/121 (41%), Positives = 80/121 (66%), Gaps = 5/121 (4%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G WK+W P  + G  LQ  T+G+VG GRIG +V ++ + + + + +Y +R+ KP     
Sbjct: 126 DGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPL---- 180

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
                ++++L K++D + + + LTP+TH L+NR RL +MK GAIL+NT+RG LVD EAL+
Sbjct: 181 PYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALV 240

Query: 144 D 144
           +
Sbjct: 241 E 241

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  109 bits (276), Expect = 1e-28
 Identities = 29/66 (43%), Positives = 36/66 (54%)

Query: 207 KKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNK 266
             + GAGLDV  PEPLP   PL  L N VI PHIGSA   TR+ MA +  +N++     +
Sbjct: 245 GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGR 304

Query: 267 PMIYEV 272
                V
Sbjct: 305 EPPNPV 310

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  164 bits (417), Expect = 5e-49
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G W  W P  + G  L    +GI G GRIG ++  +   + +    Y +R++   A + 
Sbjct: 155 SGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE 213

Query: 84  -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
               H  +D L   SD  +I +   P+    ++  R+  +  GA++IN SRG L++ +AL
Sbjct: 214 GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDAL 273

Query: 143 ID 144
           I+
Sbjct: 274 IE 275

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  102 bits (256), Expect = 2e-25
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
           + L++K +  AGLDV   EP  +D     LDN  + PHIGSA  ETR  M  +  Q I  
Sbjct: 275 EALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEA 333

Query: 262 TFHNKPMIYEV 272
              +      +
Sbjct: 334 LNQSDVPDNLI 344

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  163 bits (416), Expect = 8e-49
 Identities = 52/251 (20%), Positives = 82/251 (32%), Gaps = 66/251 (26%)

Query: 24  RGEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
            G                  ++  T+GI+G GR+G +V  +   +     L+        
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG 204

Query: 80  ADKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV 137
            ++  G +  + + DL   SD + +   L    HHLIN   ++ M+ GA L+NT+RG LV
Sbjct: 205 VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 264

Query: 138 DQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFI 197
           D++AL   + +                           G +                   
Sbjct: 265 DEKALAQALKE---------------------------GRI------------------- 278

Query: 198 FSASDVLKAKKIRGAGLDVMYPEPLPL-DSPLLQLDNCVILPHIGSAQIETRQEMARITA 256
                       RGA LDV   EP      PL    N +  PH      +   EM    A
Sbjct: 279 ------------RGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 326

Query: 257 QNIINTFHNKP 267
           + I      + 
Sbjct: 327 REIRRAITGRI 337

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  162 bits (412), Expect = 4e-48
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 67/257 (26%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
             +W+  A        ++  T+  +G GRIG  VLE+L+P+   + LY      P+   +
Sbjct: 147 NHDWE-VAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE 205

Query: 82  KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
           K GA    NI++L  Q+D + + + L   T  LIN+  L   K GA L+NT+RG +   E
Sbjct: 206 KVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAE 265

Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
            +   +                             G +                      
Sbjct: 266 DVAAALES---------------------------GQL---------------------- 276

Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDN-----CVILPHIGSAQIETRQEMARIT 255
                    RG G DV +P+P P D P   + N       + PH     ++ +   A+ T
Sbjct: 277 ---------RGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGT 327

Query: 256 AQNIINTFHNKPMIYEV 272
              + + F  K      
Sbjct: 328 VNILESFFTGKFDYRPQ 344

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  161 bits (410), Expect = 4e-48
 Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 6/126 (4%)

Query: 24  RGEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
            GEWK    +W P +  G  +   T+GI+G GRIG ++ ++   + + + LY SR++K E
Sbjct: 128 SGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEE 186

Query: 80  ADKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
            ++   AE   ++DL ++SDF+++   LT +T+HLIN  RL+ MK  AILIN +RG++VD
Sbjct: 187 VERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVD 246

Query: 139 QEALID 144
             AL+ 
Sbjct: 247 TNALVK 252

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  107 bits (269), Expect = 2e-27
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             LK   I GAGLDV   EP   +  L +LDN V+ PHIGSA    R+ MA + A+N+I 
Sbjct: 252 KALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310

Query: 262 TFHNKPMIYEV 272
               +     V
Sbjct: 311 FKRGEIPPTLV 321

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  158 bits (401), Expect = 8e-47
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP---EA 80
              W  W P  + G  L N T+GI G G IG ++ ++   + +    Y    +     EA
Sbjct: 128 TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEA 186

Query: 81  DKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
             +   H ++D L   S F  + +  TP+T +  N+A ++S+  GAI++NT+RG LVD E
Sbjct: 187 SYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE 246

Query: 141 ALID 144
            ++ 
Sbjct: 247 LVVA 250

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  108 bits (271), Expect = 8e-28
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L+A ++  AG DV   EP  ++     L N  + PHIGSA  + R++MA      I  
Sbjct: 250 AALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDA 308

Query: 262 TFHNKPMIYEV 272
            F    M Y +
Sbjct: 309 LFGGADMSYAL 319

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  152 bits (386), Expect = 5e-45
 Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 70/244 (28%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G ++           L    +GI+G G IG  V      + + + +  +RS   +     
Sbjct: 110 GIFRQSP-----TTLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ--NVD 161

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
               +  DL +QSDF++I   LT  T  ++N   L + +    ++N +R  +V +  +I 
Sbjct: 162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIG 221

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
           F+ +                                                        
Sbjct: 222 FLKE---------------------------RSDVW------------------------ 230

Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG-SAQIETRQEMARITAQNIINTF 263
                     DV + EP   ++    L N ++ PH+      E      ++  +N+ N F
Sbjct: 231 -------YLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF 280

Query: 264 HNKP 267
             + 
Sbjct: 281 EGEG 284

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  152 bits (386), Expect = 1e-44
 Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 60/235 (25%)

Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT 88
           WA     G  L+  T+GI+G GRIG  V +      +   L        E A +   +  
Sbjct: 130 WAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNEERAKEVNGKFV 188

Query: 89  NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
           +++ L K+SD + I   L   T+HLIN  RL+ MK  AILINTSRG +VD  AL+  + +
Sbjct: 189 DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE 248

Query: 149 IRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKK 208
                                      G ++                             
Sbjct: 249 ---------------------------GWIAG---------------------------- 253

Query: 209 IRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
              AGLDV   EPLP D PL + DN V+ PHIG++ +E ++      A+ ++   
Sbjct: 254 ---AGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL 305

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  139 bits (353), Expect = 1e-39
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
            G W +       G + +   +G++G G+IG ++  +   + +    Y +RS     D  
Sbjct: 154 EGRWAAGEQ-LPLGHSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSGVD-- 209

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              H +  DL + SD + +  A +  T ++++ + L+++ P  I++N +RG +VD++ALI
Sbjct: 210 WIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALI 269

Query: 144 D 144
           +
Sbjct: 270 E 270

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 89.6 bits (223), Expect = 5e-21
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           LK+  I GAGLDV   EP    S      N V++PH GSA +ETR  M ++   N+   F
Sbjct: 272 LKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHF 330

Query: 264 HNKPMIYEV 272
             +     V
Sbjct: 331 AGEKAPNTV 339

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  138 bits (351), Expect = 2e-39
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG WK     F          VGI+G GRIGL+V E+   +      Y SRSKKP  +  
Sbjct: 148 RGAWKFGD--FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPNTNYT 204

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
              + ++ +L   SD +++   LTP+T H+INR  ++++ P  +LIN  RG  VD+  L+
Sbjct: 205 --YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELV 262

Query: 144 D 144
            
Sbjct: 263 S 263

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           L   ++ GAGLDV   EP      L  L+N V+LPH+GS  +ETR+ MA +   N+   F
Sbjct: 265 LVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323

Query: 264 HNKPMIYEV 272
             KP++  V
Sbjct: 324 SGKPLLTPV 332

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  138 bits (349), Expect = 5e-39
 Identities = 51/249 (20%), Positives = 88/249 (35%), Gaps = 49/249 (19%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           R +   WAP  + G  +++  VG+VG G IG   ++ +  +  +K +     + PE +K+
Sbjct: 131 RHDL-RWAP-TI-GREVRDQVVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPELEKK 186

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
           G    ++DDL KQ+D I +     P   H+IN   +  MK   +++N SRG LVD +A+I
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246

Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
             +                             G +  +                  A DV
Sbjct: 247 RGLDS---------------------------GKIFGY------------------AMDV 261

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
            + +             P    + L+   N ++ P          + M      N +   
Sbjct: 262 YEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELV 321

Query: 264 HNKPMIYEV 272
             K     V
Sbjct: 322 EGKEAETPV 330

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  137 bits (346), Expect = 2e-38
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 13/131 (9%)

Query: 24  RGEWKSWAPNFMCGPAL----QNSTVGIVGCGRIGLSVLEKLIP---YKVSKFLYTSRSK 76
            G+ +++    +         +   +G VG G I   +  K +     K+   +Y   + 
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKL---VYYDVAP 197

Query: 77  KPEA--DKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR 133
                    GAE   ++++L ++SD + ++      THHLI+ A   +MKPG+ ++NT+R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257

Query: 134 GQLVDQEALID 144
           G ++ Q+ALI 
Sbjct: 258 GPVISQDALIA 268

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             LK+ K+  AGLDV   EP  +   L+++ +  +  HIG   IET  E  R+T  NI  
Sbjct: 268 AALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDR 326

Query: 262 TFHN-KPMIYEVP 273
                KP++    
Sbjct: 327 FLLQGKPLLTPAG 339

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  133 bits (337), Expect = 2e-37
 Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 65/247 (26%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G +K        G  L   T+GIVG GRIG  V        +    Y     + +A+K  
Sbjct: 130 GIFKKIE-----GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
           A+  ++++L K SD I +   ++ D   +I+  + E MK   I++NTSR   V+ +AL+D
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
           +I                             G V                          
Sbjct: 245 YIKK---------------------------GKVY------------------------- 252

Query: 205 KAKKIRGAGLDVMYPEPLP--LDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
                     DV + EP     +  LL+ +  ++  HIG+   E ++ +A +T QN++N 
Sbjct: 253 ------AYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNA 306

Query: 263 FHNKPMI 269
                MI
Sbjct: 307 MKELGMI 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  132 bits (335), Expect = 6e-37
 Identities = 52/243 (21%), Positives = 86/243 (35%), Gaps = 62/243 (25%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
           G+W+     FM G  L   T+GI+G GRIG  V  ++  + +    Y        +   G
Sbjct: 151 GKWER--KKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
            +   ++++    DFI + + L P T  L+N       K G  ++N +RG +VD+ AL+ 
Sbjct: 208 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 267

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
            +                             G  +                         
Sbjct: 268 ALQS---------------------------GQCA------------------------- 275

Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
                 GA LDV   EP P D  L+  +N +  PH+G++  E +       A   ++   
Sbjct: 276 ------GAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 328

Query: 265 NKP 267
            K 
Sbjct: 329 GKS 331

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  133 bits (338), Expect = 3e-36
 Identities = 67/248 (27%), Positives = 98/248 (39%), Gaps = 62/248 (25%)

Query: 25  GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
             WK    +F  G  +   TVG+VG GRIG  V +++  +      Y        A + G
Sbjct: 128 HTWKR--SSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLG 184

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
            E  ++DDL  ++DFI +    TP+T  LI++  L   KPG I++N +RG LVD+ AL D
Sbjct: 185 IELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALAD 244

Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
            I                             GHV                          
Sbjct: 245 AITG---------------------------GHV-------------------------- 251

Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
                R AGLDV   EP   DSPL +L   V+ PH+G++  E +       A+++     
Sbjct: 252 -----RAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALA 305

Query: 265 NKPMIYEV 272
            + +   V
Sbjct: 306 GEFVPDAV 313

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  130 bits (329), Expect = 4e-36
 Identities = 56/260 (21%), Positives = 89/260 (34%), Gaps = 71/260 (27%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSK 76
            G++   A  F+ G  L   TVG++G G IG   ++       K+I Y            
Sbjct: 129 AGDY-EKAGTFI-GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP---------Y 177

Query: 77  KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
             + D    ++ +++DL KQSD I +         H+IN A    MKPGAI+INT+R  L
Sbjct: 178 PMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 237

Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV---- 192
           +D +A++  +                             G ++          DT     
Sbjct: 238 IDTQAMLSNLKS---------------------------GKLAGVGI------DTYEYET 264

Query: 193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMA 252
                 +                       PL   LL + N V+ PHI          M 
Sbjct: 265 EDLLNLAKHGSF----------------KDPLWDELLGMPNVVLSPHIAYYTETAVHNMV 308

Query: 253 RITAQNIINTFHNKPMIYEV 272
             + Q++++         EV
Sbjct: 309 YFSLQHLVDFLTKGETSTEV 328

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  125 bits (316), Expect = 3e-34
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 26  EWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KRG 84
             + WA        L    + I G G+IG S+  K     +   +  + +  P       
Sbjct: 122 GARQWALPMT-TSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPADHFHET 179

Query: 85  AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
              T   D    ++FI+    LTP THHL +    +  K   +LIN  RG  VD  AL+ 
Sbjct: 180 VAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMT 239

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L   ++  A LDV  PEPLP D PL Q D+ +I PHI       R  +  I A N   
Sbjct: 239 TALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQ 298

Query: 262 TFHN-KPMIYEV 272
              +   +  +V
Sbjct: 299 FVKDGTLVRNQV 310

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  124 bits (313), Expect = 7e-34
 Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 72/261 (27%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSK 76
           +  +      FM    ++N TVG+VG GRIG    +        +I   V          
Sbjct: 130 KKNF-KVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDV---------F 178

Query: 77  KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
           + +  +      ++D++ ++SD I I +    +   ++ R  L+ MK GAIL+N +RGQL
Sbjct: 179 EIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL 238

Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF 196
           VD EA+I+ +                             G +  +               
Sbjct: 239 VDTEAVIEAVES---------------------------GKLGGY--------------- 256

Query: 197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQ-----LDNCVILPHIGSAQIETRQEM 251
                DVL  +    A +     E   L++PL +         +I PH+GS   E  + M
Sbjct: 257 ---GCDVLDGE----ASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309

Query: 252 ARITAQNIINTFHNKPMIYEV 272
             ++ QN+ +         ++
Sbjct: 310 VEVSYQNLKDLAETGDCPNKI 330

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  115 bits (289), Expect = 6e-30
 Identities = 57/261 (21%), Positives = 88/261 (33%), Gaps = 83/261 (31%)

Query: 24  RGEW-KSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLE-----KLIPYKVSKFLYTSRS 75
           RG   K            +   +GI+G G IG  L +L       +  Y +   L     
Sbjct: 130 RGVGNKL---AAG-SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL----- 180

Query: 76  KKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135
                     +  ++ DL   SD + +     P T +++    +  MKPG++LIN SRG 
Sbjct: 181 ----PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 236

Query: 136 LVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY 195
           +VD  AL D +A                             H++                
Sbjct: 237 VVDIPALADALAS---------------------------KHLA---------------- 253

Query: 196 FIFSASDVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIGSAQIETRQEM 251
                          GA +DV   EP     P  SPL + DN ++ PHIG +  E ++ +
Sbjct: 254 ---------------GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENI 298

Query: 252 ARITAQNIINTFHNKPMIYEV 272
               A  +I    N   +  V
Sbjct: 299 GLEVAGKLIKYSDNGSTLSAV 319

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  111 bits (280), Expect = 9e-29
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 71/237 (29%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP--EADKRGAEHTNIDDLC 94
           G  L   T G+VG G++G  ++E L        +       P  +A +   E  +++ L 
Sbjct: 111 GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCD-----PPRQAREPDGEFVSLERLL 165

Query: 95  KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150
            ++D I + + L  D    T HL++  RL +++PG  L+N SRG +VD +AL   +    
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLL---- 221

Query: 151 VISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIR 210
                                    G                                  
Sbjct: 222 -----------------------EGGADL------------------------------- 227

Query: 211 GAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP 267
              LDV   EP     P L     +  PHI    +E +        Q          
Sbjct: 228 EVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAE 282

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  110 bits (277), Expect = 4e-28
 Identities = 55/262 (20%), Positives = 88/262 (33%), Gaps = 85/262 (32%)

Query: 24  RGEW-KSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLE-----KLIPYKVSKFLYTSRS 75
            G W K+          ++  T+GIVG G IG  +  L       +  Y           
Sbjct: 141 AGGWEKT---AIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDT--------- 187

Query: 76  KKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRG 134
              +      +   ++D+L K SD + +    +  T  LI  A+L  MK GA LIN +RG
Sbjct: 188 -SDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246

Query: 135 QLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI 194
             VD EAL   + +                           GH++               
Sbjct: 247 SDVDLEALAKVLQE---------------------------GHLA--------------- 264

Query: 195 YFIFSASDVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIGSAQIETRQE 250
                           GA +DV   EP        +PL  L+N ++ PHIG +  E ++ 
Sbjct: 265 ----------------GAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQER 308

Query: 251 MARITAQNIINTFHNKPMIYEV 272
           +     + ++        +  V
Sbjct: 309 IGTEVTRKLVEYSDVGSTVGAV 330

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  108 bits (272), Expect = 1e-27
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 24  RGEWK-------SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK 76
            G W+       +  PNF  G  L+  T+GI G G+IG  V      + ++  ++   + 
Sbjct: 135 HGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS 194

Query: 77  KPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135
           K  A   G     + D L +QSD + +   L  +T  +I  A L  MKP A+ +NTSR +
Sbjct: 195 KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAE 254

Query: 136 LVDQEALID 144
           LV++  ++ 
Sbjct: 255 LVEENGMVT 263

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L   +   A +DV   EP+     LL+++NC+  PHIG  + E+ +    I  QNI++
Sbjct: 263 TALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILD 322

Query: 262 TFHNKP 267
                 
Sbjct: 323 ILQGNV 328

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  106 bits (267), Expect = 7e-27
 Identities = 47/237 (19%), Positives = 78/237 (32%), Gaps = 71/237 (29%)

Query: 37  GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP--EADKRGAEHTNIDDLC 94
           G +L++ T+GIVG G +G  +  +L    +   L       P   A     +   +D+L 
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC-----DPPRAARGDEGDFRTLDELV 168

Query: 95  KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150
           +++D +   + L  D    T HL +   +  +KPGAILIN  RG +VD  AL+  +    
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN--- 225

Query: 151 VISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIR 210
                                    G   +                              
Sbjct: 226 ------------------------AGQPLS------------------------------ 231

Query: 211 GAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP 267
              LDV   EP  L+  LL+  + +   HI    +E +        +        + 
Sbjct: 232 -VVLDVWEGEP-DLNVALLEAVD-IGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ 285

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  100 bits (252), Expect = 3e-25
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEAD 81
           +  WK            +  +VGI+G G +G  V E L    + +  +   SRS+K    
Sbjct: 126 QALWKPLPE-----YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCW---SRSRKSWPG 177

Query: 82  KR---GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
                G E   +     Q+  +I     T  T  +IN   L+ +  GA ++N +RG  V 
Sbjct: 178 VESYVGREE--LRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235

Query: 139 QEALID 144
           +  L+ 
Sbjct: 236 EADLLA 241

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
           L + K++GA LDV   EPLP +SPL +     + PHI +  +    E     ++ I    
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAA--VTRPAEAIDYISRTITQLE 300

Query: 264 HNKPMIYEV 272
             +P+  +V
Sbjct: 301 KGEPVTGQV 309

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  100 bits (252), Expect = 4e-25
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 17/127 (13%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEAD 81
           +  W+S          L+  T+ I+G G IG  +         KV      SRS +  A 
Sbjct: 127 QRLWQSHPY-----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVL---GVSRSGRERA- 177

Query: 82  KRGAEHT----NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV 137
             G +       ++ +  Q+D I+     T +THHL   +R E  KPGAIL N  RG  +
Sbjct: 178 --GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI 235

Query: 138 DQEALID 144
           ++  L+ 
Sbjct: 236 NEGDLLT 242

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
             L+  K+  A LDV   EPLP DSPL    N +I PH  +       ++A+I  +N I 
Sbjct: 242 TALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSA--YSFPDDVAQIFVRNYIR 299

Query: 262 TFHNKPMIYEV 272
               +P+  ++
Sbjct: 300 FIDGQPLDGKI 310

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYT-SRSKKPEADKRGAEHTNIDDL---CK 95
           +  + V ++G GR+G+SV  K         +            + G E  +I       +
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212

Query: 96  QSDFIIITSALTPDTHHLINRARLESMKPGAILINT-SRGQLVDQEA 141
             D  I T         ++    L  M     +I+  S+    D   
Sbjct: 213 DVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 41/291 (14%), Positives = 83/291 (28%), Gaps = 97/291 (33%)

Query: 46  GIVGCGRIGLSVL----------EKLIPYKVSKF-LYTSRSKKPEADKRGAEHTNIDDLC 94
           G++G G+   + +          +  + +K+  F L       PE          +  L 
Sbjct: 157 GVLGSGK---TWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLE-----MLQKLL 206

Query: 95  KQSDFIIITSALTPDTHHLIN-RARLESMK------------PGAILI--NTSRGQLVD- 138
            Q     I    T  + H  N + R+ S++               +L+  N    +  + 
Sbjct: 207 YQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 139 ------------QEALIDFIADIRVISISMVTNEKHL--------------HRVFTLGDS 172
                        + + DF++      IS+  +   L               R   L   
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 173 FHKGH------VSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDS 226
               +      ++  I   +   D     +     D  K   I  + L+V       L+ 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWD----NWKHVNCD--KLTTIIESSLNV-------LEP 368

Query: 227 PLLQ--LDNCVILPHIGSAQIETR------QEMARITAQNIINTFHNKPMI 269
              +   D   + P   SA I T        ++ +     ++N  H   ++
Sbjct: 369 AEYRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 40  LQNSTVGIVGC-GRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQ 96
           +   TV I+G  G++G  +  K+    + ++        +       G   T+ D    +
Sbjct: 9   VGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRD-RLQGMGIPLTDGDGWIDE 67

Query: 97  SDFIIITSALTPDTHHL-INRARLESMKPGAILI 129
           +D +++     PD     +    +  ++PG I++
Sbjct: 68  ADVVVL---ALPDNIIEKVAEDIVPRVRPGTIVL 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.95
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.95
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.83
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.81
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.69
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.68
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.66
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.65
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.61
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.59
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.59
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.58
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.57
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.56
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.54
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.51
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.51
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.48
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.47
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.46
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.44
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.44
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.41
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.41
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.37
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.35
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.33
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.32
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.32
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.3
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.29
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.29
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.28
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.26
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.26
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.26
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.25
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.25
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.25
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.22
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.18
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.17
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.17
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.16
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.16
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.1
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.1
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.09
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.05
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.05
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.04
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.02
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.55
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.94
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.93
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.91
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.9
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.86
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.84
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.83
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.82
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.82
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.8
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.79
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.74
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.74
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.73
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.73
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.73
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.69
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.68
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.67
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.65
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.63
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.6
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.58
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.58
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.56
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.56
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.55
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.55
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.54
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.51
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.51
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.51
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.5
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.5
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.49
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.48
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.46
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.44
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.44
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.43
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.43
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.42
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.41
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.41
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.4
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.39
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.38
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.37
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.36
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.36
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.35
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.33
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.31
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.26
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.25
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.25
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.25
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.25
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.23
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.21
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.15
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.14
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.14
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.07
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.07
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.06
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.05
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.98
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.96
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.95
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.93
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.91
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.91
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.9
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.9
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.9
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.88
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.86
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.86
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.85
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.84
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.84
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.83
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.81
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.8
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.79
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.78
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.78
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.76
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.74
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.74
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.72
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.71
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.7
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.69
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.68
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.64
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.64
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.64
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.63
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.6
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.6
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.53
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.51
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.51
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.5
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.5
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.49
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.47
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.47
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.46
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.43
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.43
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.43
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.41
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.39
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.38
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.38
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.37
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.37
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.37
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.36
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.34
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.33
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.33
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.32
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.3
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.27
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.25
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.25
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.21
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.21
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.21
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.2
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.2
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.18
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.18
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.17
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.15
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.14
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.14
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.13
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.12
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.1
4had_A	350	Probable oxidoreductase protein; structural genomi	97.07
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.07
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.07
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.05
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.05
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.05
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.04
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.04
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.03
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.03
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.03
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.02
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.01
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.99
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.92
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.91
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.91
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.89
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.87
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.84
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.84
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.83
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.81
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.79
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.78
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.77
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.76
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.76
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.74
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.73
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.73
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.73
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.72
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.72
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.71
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.71
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.71
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.71
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.68
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.68
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.68
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.68
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.68
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.68
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.67
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.67
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.67
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.67
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.65
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.64
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.64
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.63
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.62
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.62
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.61
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.61
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.6
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.6
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.6
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.6
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.6
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.59
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.59
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.56
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.56
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.55
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.55
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.55
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.55
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.53
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.52
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.52
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.5
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.49
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.48
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.48
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.48
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.47
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.47
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.46
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.45
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.43
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.42
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.41
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.4
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.38
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.38
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.37
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.35
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.35
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.33
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.32
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.32
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.31
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.28
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.28
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.27
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.27
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.23
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.2
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.2
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.19
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.19
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.18
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.17
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.16
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.16
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.16
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.15
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.15
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.14
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.14
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.13
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.13
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.12
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.11
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.09
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.09
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.08
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.06
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.05
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.05
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.04
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.99
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.99
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.99
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.98
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.97
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.97
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.97
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.96
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.95
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.92
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.91
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.9
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.88
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.86
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.85
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.85
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.84
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.82
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.8
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.79
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.78
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.78
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.76
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.74
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.74
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.74
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.72
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.72
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.71
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	95.69
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.69
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.69
1lnq_A	336	MTHK channels, potassium channel related protein;	95.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.65
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.64
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.64
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.64
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.63
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.62
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.61
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.61
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.59
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.56
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.56
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.55
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.53
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.53
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.52
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.51
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.49
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.48
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.43
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.43
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.41
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.4
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.38
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.38
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.38
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.36
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.35
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.35
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.35
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.34
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.32
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.31
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	95.3
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.28
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.27
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.27
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.24
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	95.24
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.24
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.22
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.22
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.21
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.21
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.18
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.18
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.17
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.15
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.12
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.09
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.07
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.04
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.03
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.02
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.99
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.98
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	94.97
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.95
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	94.94
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.92
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.91
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.9
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.9
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	94.89
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.89
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.88
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.87
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.86
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.85
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	94.85
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.85
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	94.84
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	94.81
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.8
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.79
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.77
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.76
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.75
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.74
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.74
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.74
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.72
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.71
3on5_A	362	BH1974 protein; structural genomics, joint center	94.71
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.7

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=9.5e-49  Score=368.98  Aligned_cols=205  Identities=28%  Similarity=0.489  Sum_probs=185.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+.|.+..+.|.+|+||||||||+|+||+++|++|++|||++++|+++...... ..++.
T Consensus       138 l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~g~~  216 (345)
T 4g2n_A          138 LVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHAL-EEGAI  216 (345)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHH-HTTCE
T ss_pred             HHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhh-hcCCe
Confidence            567777777  445567899998876556789999999999999999999999999999976666654433332 23777


Q ss_pred             cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ++ +++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       217 ~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~---------------------  275 (345)
T 4g2n_A          217 YHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIE---------------------  275 (345)
T ss_dssp             ECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHH---------------------
T ss_pred             EeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHH---------------------
Confidence            76 99999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++|| |.++|||++|||++|||+|++|.
T Consensus       276 -------------------------------------aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~  317 (345)
T 4g2n_A          276 -------------------------------------ALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATH  317 (345)
T ss_dssp             -------------------------------------HHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBH
T ss_pred             -------------------------------------HHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCH
Confidence                                                 9999999999999999999 88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      +++.+|+..+++||.+|+.|+++.|.|+
T Consensus       318 e~~~~~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          318 ETRDAMGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999999999999885

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.4e-49  Score=372.94  Aligned_cols=204  Identities=27%  Similarity=0.390  Sum_probs=180.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|.+.|.+  ......+|.|..|.  ...|.+|+|++|||||+|.||+.+|+++++|||++++|++. .+......++.
T Consensus       108 l~L~~~r~~~~~~~~~~~~~~~~~~--~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~-~~~~~~~~~~~  184 (334)
T 3kb6_A          108 MILTLVKRLKRIEDRVKKLNFSQDS--EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV-KREDLKEKGCV  184 (334)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCG--GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CCHHHHHTTCE
T ss_pred             HHHHHhhcccccccccccccccccc--ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCc-cchhhhhcCce
Confidence            567777776  33455678886543  35689999999999999999999999999999977776644 44445556777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      +.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++                      
T Consensus       185 ~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~----------------------  242 (334)
T 3kb6_A          185 YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYR----------------------  242 (334)
T ss_dssp             ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHH----------------------
T ss_pred             ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHH----------------------
Confidence            8899999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCC---------------ccccC
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDS---------------PLLQL  231 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~---------------~l~~~  231 (274)
                                                          ||++|+|+||+||||++||+|.++               |||.+
T Consensus       243 ------------------------------------aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~  286 (334)
T 3kb6_A          243 ------------------------------------AYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACK  286 (334)
T ss_dssp             ------------------------------------HHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTS
T ss_pred             ------------------------------------HHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccC
Confidence                                                999999999999999999998776               68899


Q ss_pred             CcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         232 DNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       232 ~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      |||++|||+|++|.+++++++..+++||.+|++|++....+|
T Consensus       287 ~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n  328 (334)
T 3kb6_A          287 DNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN  328 (334)
T ss_dssp             TTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred             CCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence            999999999999999999999999999999999998765554

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=7.5e-48  Score=360.62  Aligned_cols=206  Identities=31%  Similarity=0.540  Sum_probs=187.2

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|++.|.+  .....++|.|..|.+ ...|.+|+|+||||||+|+||+++|++|++||+++++|+++..... +...|+
T Consensus       111 ~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          111 LAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             HHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            567777777  445667899988876 3568999999999999999999999999999997777665543443 555677


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       190 ~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~---------------------  248 (330)
T 4e5n_A          190 RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLA---------------------  248 (330)
T ss_dssp             EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHH---------------------
T ss_pred             eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHH---------------------
Confidence            77799999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCC-------CCCCCCccccCCcEEEcc
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPE-------PLPLDSPLLQLDNCVILP  238 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~e-------p~~~~~~l~~~~nvi~tP  238 (274)
                                                           ||++|+|.||+||||++|       |+|.++|||++|||++||
T Consensus       249 -------------------------------------aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTP  291 (330)
T 4e5n_A          249 -------------------------------------ALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTP  291 (330)
T ss_dssp             -------------------------------------HHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECS
T ss_pred             -------------------------------------HHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECC
Confidence                                                 999999999999999999       999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         239 HIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       239 H~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      |+|++|.+++.++...+++||.+|++|+++.|.||
T Consensus       292 Hia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  326 (330)
T 4e5n_A          292 HIGSAVRAVRLEIERCAAQNILQALAGERPINAVN  326 (330)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHHHHHHTTSCCTTBSS
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            99999999999999999999999999999999987

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=5.9e-47  Score=359.11  Aligned_cols=204  Identities=23%  Similarity=0.357  Sum_probs=178.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCC-CCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPN-FMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG   84 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~-~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g   84 (274)
                      ++|++.|.+  .....+.|+|. |... ...|.+|+|+||||||+|.||+++|+++++|||++++|+++ .... +...|
T Consensus       141 l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~-~~~~~~~~~g  218 (365)
T 4hy3_A          141 FALALARGIVDADIAFQEGTEL-WGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPW-LPRSMLEENG  218 (365)
T ss_dssp             HHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSS-SCHHHHHHTT
T ss_pred             HHHHHHhchhHHHHHHHcCCcc-ccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCC-CCHHHHhhcC
Confidence            567777877  33344567753 3221 24679999999999999999999999999999977766655 4443 55678


Q ss_pred             CcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        85 ~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      +...+++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||++                    
T Consensus       219 ~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~--------------------  278 (365)
T 4hy3_A          219 VEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMA--------------------  278 (365)
T ss_dssp             CEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHH--------------------
T ss_pred             eeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHH--------------------
Confidence            887899999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+ |+||||++||+|.++|||.+|||++|||+|++|
T Consensus       279 --------------------------------------aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t  319 (365)
T 4hy3_A          279 --------------------------------------AVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGAL  319 (365)
T ss_dssp             --------------------------------------HHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCC
T ss_pred             --------------------------------------HHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCH
Confidence                                                  99999999 899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      .+++.+|+..+++||.+|+.|+|+.+.|+
T Consensus       320 ~e~~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          320 DSAFKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999999998876

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=3.6e-47  Score=358.99  Aligned_cols=205  Identities=28%  Similarity=0.457  Sum_probs=183.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCc-------cCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKS-------WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE   79 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~-------~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~   79 (274)
                      ++|++.|.+  .....++|.|+.       |.+....|++|+|+||||||+|.||+++|+++++||+++++|+++ .+..
T Consensus       118 l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~-~~~~  196 (352)
T 3gg9_A          118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRE-NSKE  196 (352)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSH-HHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCC-CCHH
Confidence            467777877  444556799975       333445689999999999999999999999999999977777654 3333


Q ss_pred             -HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240          80 -ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus        80 -a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                       +...|+..+ +++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++             
T Consensus       197 ~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~-------------  263 (352)
T 3gg9_A          197 RARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVT-------------  263 (352)
T ss_dssp             HHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHH-------------
T ss_pred             HHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHH-------------
Confidence             556788777 99999999999999999999999999999999999999999999999999999999             


Q ss_pred             cccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEc
Q psy3240         158 TNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVIL  237 (274)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~t  237 (274)
                                                                   ||++|+|+||+||||++||+|.++|||++|||++|
T Consensus       264 ---------------------------------------------aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  298 (352)
T 3gg9_A          264 ---------------------------------------------ALNRGRPGMAAIDVFETEPILQGHTLLRMENCICT  298 (352)
T ss_dssp             ---------------------------------------------HHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEEC
T ss_pred             ---------------------------------------------HHHhCCccEEEecccCCCCCCCCChhhcCCCEEEC
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         238 PHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       238 PH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ||+|+.|.++++++...+++||.+|+.|+|+ |.||
T Consensus       299 PHia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          299 PHIGYVERESYEMYFGIAFQNILDILQGNVD-SVAN  333 (352)
T ss_dssp             CSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-cccC
Confidence            9999999999999999999999999999875 7765

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=7.2e-47  Score=352.10  Aligned_cols=200  Identities=24%  Similarity=0.350  Sum_probs=174.2

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|++.|.+  .....++|.|+..     .+++|+|+||||||+|.||+++|++|++|||++++|+++..... .... .
T Consensus       109 ~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~  182 (315)
T 3pp8_A          109 QVLHWFRRFDDYQALKNQALWKPL-----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY-V  182 (315)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE-E
T ss_pred             HHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh-c
Confidence            345666666  3344567999753     35899999999999999999999999999998888876544322 1110 1


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...+++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       183 ~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~---------------------  241 (315)
T 3pp8_A          183 GREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLA---------------------  241 (315)
T ss_dssp             SHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHH---------------------
T ss_pred             ccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHH---------------------
Confidence            12479999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++||+|.++|||++|||++|||+|++|.
T Consensus       242 -------------------------------------aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~  284 (315)
T 3pp8_A          242 -------------------------------------ALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTR  284 (315)
T ss_dssp             -------------------------------------HHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCC
T ss_pred             -------------------------------------HHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccH
Confidence                                                 9999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      +  .++...+++||.+|++|+++.|.|+.
T Consensus       285 ~--~~~~~~~~~ni~~~~~G~~~~~~V~~  311 (315)
T 3pp8_A          285 P--AEAIDYISRTITQLEKGEPVTGQVDR  311 (315)
T ss_dssp             H--HHHHHHHHHHHHHHHHTCCCCCBCCC
T ss_pred             H--HHHHHHHHHHHHHHHcCCCCCceECc
Confidence            5  57999999999999999999999974

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=8.4e-47  Score=352.93  Aligned_cols=204  Identities=27%  Similarity=0.375  Sum_probs=177.5

Q ss_pred             HHHHHHhhhc---cchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC
Q psy3240           9 IYIDVIKYVS---TPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~~---~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~   85 (274)
                      ++|++.|.+.   ....++|.|+...    .+++|+|+||||||+|.||+++|++|++|||++++|+++...........
T Consensus       105 ~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~  180 (324)
T 3evt_A          105 AMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV  180 (324)
T ss_dssp             HHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEE
T ss_pred             HHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhcc
Confidence            4566677662   4455678997532    47899999999999999999999999999998777776544322111122


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       181 ~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~---------------------  239 (324)
T 3evt_A          181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMT---------------------  239 (324)
T ss_dssp             EGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             ccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHH---------------------
Confidence            34589999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++||+|.++|||++|||++|||+|+.|.
T Consensus       240 -------------------------------------aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~  282 (324)
T 3evt_A          240 -------------------------------------ALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIA  282 (324)
T ss_dssp             -------------------------------------HHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCC
T ss_pred             -------------------------------------HHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChH
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcC-CCCCCcccC
Q psy3240         246 ETRQEMARITAQNIINTFHN-KPMIYEVPL  274 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g-~~~~~~v~~  274 (274)
                      +++.+++..+++|+.+|++| +++.|.|+.
T Consensus       283 ~~~~~~~~~~~~nl~~~l~~~~~~~n~V~~  312 (324)
T 3evt_A          283 HFRATVFPIFAANFAQFVKDGTLVRNQVDL  312 (324)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCCCSCBCC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCceECc
Confidence            99999999999999999965 578898873

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=6.3e-47  Score=353.85  Aligned_cols=201  Identities=26%  Similarity=0.405  Sum_probs=175.2

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|...     .+.+|+|+||||||+|.||+++|++|++|||++++|+++............
T Consensus       110 ~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~  184 (324)
T 3hg7_A          110 HLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ  184 (324)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEEC
T ss_pred             HHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccc
Confidence            566777776  4445567899752     357999999999999999999999999999977777654432221111223


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..+++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                      
T Consensus       185 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~----------------------  242 (324)
T 3hg7_A          185 LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT----------------------  242 (324)
T ss_dssp             GGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHH----------------------
T ss_pred             cCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHH----------------------
Confidence            4589999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          ||++|+|+||+||||++||+|.++|||++|||++|||+|++|.+
T Consensus       243 ------------------------------------aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~  286 (324)
T 3hg7_A          243 ------------------------------------ALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP  286 (324)
T ss_dssp             ------------------------------------HHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH
T ss_pred             ------------------------------------HHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH
Confidence                                                99999999999999999999999999999999999999999975


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         247 TRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                        .++...+++|+.+|++|+++.|.|+.
T Consensus       287 --~~~~~~~~~nl~~~~~G~~~~~~V~~  312 (324)
T 3hg7_A          287 --DDVAQIFVRNYIRFIDGQPLDGKIDF  312 (324)
T ss_dssp             --HHHHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             --HHHHHHHHHHHHHHHcCCCCcceECh
Confidence              57999999999999999999999974

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.8e-46  Score=354.17  Aligned_cols=205  Identities=24%  Similarity=0.441  Sum_probs=180.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|++.|.+  .....++|+|..... ...+.+|+|++|||||+|+||+++|++|++|||++++|+++..... +...|+
T Consensus       130 l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          130 RILILMRNFVPGYNQVVKGEWNVAGI-AYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCCHHHH-HTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC
T ss_pred             HHHHHhhCcHHHHHHHHcCCCccccc-cCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC
Confidence            567777776  445567799974211 1246799999999999999999999999999997666665443443 556688


Q ss_pred             ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      ... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                    
T Consensus       209 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~--------------------  268 (351)
T 3jtm_A          209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD--------------------  268 (351)
T ss_dssp             EECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH--------------------
T ss_pred             eEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHH--------------------
Confidence            776 89999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            ||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus       269 --------------------------------------aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t  310 (351)
T 3jtm_A          269 --------------------------------------AVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT  310 (351)
T ss_dssp             --------------------------------------HHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGS
T ss_pred             --------------------------------------HHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCC
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC--CCCcc
Q psy3240         245 IETRQEMARITAQNIINTFHNKP--MIYEV  272 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~--~~~~v  272 (274)
                      .+++.+++..+++|+.+|++|++  +.|.|
T Consensus       311 ~ea~~~~~~~~~~nl~~~~~g~~~~~~~~i  340 (351)
T 3jtm_A          311 IDAQLRYAAGTKDMLERYFKGEDFPTENYI  340 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCGGGEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCceEE
Confidence            99999999999999999999996  44443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=3.2e-46  Score=351.55  Aligned_cols=204  Identities=27%  Similarity=0.382  Sum_probs=177.2

Q ss_pred             HHHHHHhhh--ccchhc-cCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC
Q psy3240           9 IYIDVIKYV--STPVSC-RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~-~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~   85 (274)
                      ++|++.|.+  .....+ +|+|. |.. ...|++|+|+||||||+|.||+++|+++++|||++++|+++.. .. ...++
T Consensus       114 l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~-~~~~~  189 (343)
T 2yq5_A          114 QAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYN-PE-FEPFL  189 (343)
T ss_dssp             HHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-GG-GTTTC
T ss_pred             HHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChh-hh-hhccc
Confidence            567777777  233333 67773 432 2468999999999999999999999999999997777765543 22 23345


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      .+.++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       190 ~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~---------------------  248 (343)
T 2yq5_A          190 TYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIK---------------------  248 (343)
T ss_dssp             EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             cccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHH---------------------
Confidence            66799999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCC--CCCC-----------CccccCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP--LPLD-----------SPLLQLD  232 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep--~~~~-----------~~l~~~~  232 (274)
                                                           ||++|+|+||+||||++||  +|.+           +|||++|
T Consensus       249 -------------------------------------aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~  291 (343)
T 2yq5_A          249 -------------------------------------ALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMP  291 (343)
T ss_dssp             -------------------------------------HHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCT
T ss_pred             -------------------------------------HHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCC
Confidence                                                 9999999999999999999  5665           5899999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ||++|||+|++|.+++++|...+++|+.+|+.|+++.|+|+.
T Consensus       292 nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~~  333 (343)
T 2yq5_A          292 NVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVNL  333 (343)
T ss_dssp             TEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC--
T ss_pred             CEEECCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceECC
Confidence            999999999999999999999999999999999999999873

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-45  Score=347.48  Aligned_cols=201  Identities=27%  Similarity=0.468  Sum_probs=151.4

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+.+. ....|.+|+||||||||+|+||+++|+++++||+++++|+++ ...   ..+..
T Consensus       137 l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~-~~~---~~~~~  211 (340)
T 4dgs_A          137 LMLAVLRRVGDGDRLVREGRWAAGE-QLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRS-TLS---GVDWI  211 (340)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS-CCT---TSCCE
T ss_pred             HHHHHHhChHHHHHHHhcCCccccc-CcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC-ccc---ccCce
Confidence            677888887  45566789997641 123578999999999999999999999999999976655544 332   12333


Q ss_pred             c-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 H-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      . .+++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||++                     
T Consensus       212 ~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~---------------------  270 (340)
T 4dgs_A          212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIE---------------------  270 (340)
T ss_dssp             ECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-------------------------------
T ss_pred             ecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHH---------------------
Confidence            3 489999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           ||++|+|+||+||||++||+|. +|||++|||++|||+|++|.
T Consensus       271 -------------------------------------aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~  312 (340)
T 4dgs_A          271 -------------------------------------ALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATV  312 (340)
T ss_dssp             -----------------------------------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCH
T ss_pred             -------------------------------------HHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCH
Confidence                                                 9999999999999999999986 49999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      +++.+++..+++|+.+|+.|+++.+.||
T Consensus       313 e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          313 ETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999999999999986

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=6.3e-45  Score=350.19  Aligned_cols=202  Identities=28%  Similarity=0.441  Sum_probs=173.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|.+.|.+  .....++|+|.++.   ..|.+|+||||||||+|.||+.+|+++++|||++++|++.....   ..++.
T Consensus       124 l~L~l~R~i~~~~~~~~~g~W~~~~---~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~---~~~~~  197 (416)
T 3k5p_A          124 EIIMLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ---YGNVK  197 (416)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCC---TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC---BTTBE
T ss_pred             HHHHHhcccHHHHHhhhcccccccC---CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc---ccCcE
Confidence            456677776  44456779997643   24689999999999999999999999999999877776543322   11233


Q ss_pred             c-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 H-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      . .+++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||++                     
T Consensus       198 ~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~---------------------  256 (416)
T 3k5p_A          198 PAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAK---------------------  256 (416)
T ss_dssp             ECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHH---------------------
T ss_pred             ecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHH---------------------
Confidence            3 489999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCC----CccccCCcEEEccCCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLD----SPLLQLDNCVILPHIG  241 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~----~~l~~~~nvi~tPH~~  241 (274)
                                                           ||++|+|+||+||||++||++.+    +|||.+|||++|||+|
T Consensus       257 -------------------------------------aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig  299 (416)
T 3k5p_A          257 -------------------------------------VLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG  299 (416)
T ss_dssp             -------------------------------------HHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCT
T ss_pred             -------------------------------------HHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCC
Confidence                                                 99999999999999999999875    7999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ++|.|++++++.++++|+.+|+.|++..+.||+
T Consensus       300 ~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~  332 (416)
T 3k5p_A          300 GSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNF  332 (416)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhCCCCceeeC
Confidence            999999999999999999999999999999885

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.5e-44  Score=338.28  Aligned_cols=203  Identities=26%  Similarity=0.374  Sum_probs=178.2

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|. |.  ...|.+|.|++|||||+|.||+.+|++++++|+++++|+++.. ....+ .+.
T Consensus       114 l~L~~~R~~~~~~~~~~~g~w~-~~--~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~-~~~~~-~~~  188 (333)
T 1j4a_A          114 QAARILRQDKAMDEKVARHDLR-WA--PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PELEK-KGY  188 (333)
T ss_dssp             HHHHHHHTHHHHHHHHHTTBCC-CT--TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHH-TTC
T ss_pred             HHHHHHcCHHHHHHHHHcCCCc-cC--CcccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-hhHHh-hCe
Confidence            567777777  34455678895 43  2457899999999999999999999999999997766665443 32322 355


Q ss_pred             cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      .. ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|++                     
T Consensus       189 ~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~---------------------  247 (333)
T 1j4a_A          189 YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIR---------------------  247 (333)
T ss_dssp             BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH---------------------
T ss_pred             ecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHH---------------------
Confidence            56 89999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCC--CCCCC-----------ccccCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP--LPLDS-----------PLLQLD  232 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep--~~~~~-----------~l~~~~  232 (274)
                                                           ||++|+|+||+||||++||  +|.++           |||++|
T Consensus       248 -------------------------------------aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~  290 (333)
T 1j4a_A          248 -------------------------------------GLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARP  290 (333)
T ss_dssp             -------------------------------------HHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCT
T ss_pred             -------------------------------------HHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCC
Confidence                                                 9999999999999999999  56654           699999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ||++|||+|++|.+++.++...+++|+.+|+.|+++.|.|++
T Consensus       291 nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  332 (333)
T 1j4a_A          291 NVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVKV  332 (333)
T ss_dssp             TEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCCC
T ss_pred             CEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence            999999999999999999999999999999999999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.1e-44  Score=346.65  Aligned_cols=206  Identities=26%  Similarity=0.447  Sum_probs=181.5

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|++.|.+  .....++|.|+... ....+.+|+|++|||||+|.||+.+|+++++|||++++|+++..... +...|+
T Consensus       157 liL~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          157 MILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHhccHHHHHHHHcCCCCccc-cccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            567777766  34455679996421 11246799999999999999999999999999997776665544433 555677


Q ss_pred             cc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      .. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                    
T Consensus       236 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~--------------------  295 (393)
T 2nac_A          236 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVAR--------------------  295 (393)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHH--------------------
T ss_pred             eecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHH--------------------
Confidence            66 489999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            +|++|+|.||+||||++||+|.++|||++|||++|||+|+.|
T Consensus       296 --------------------------------------aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T  337 (393)
T 2nac_A          296 --------------------------------------ALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT  337 (393)
T ss_dssp             --------------------------------------HHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCS
T ss_pred             --------------------------------------HHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCc
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      .+++.+++..+++||.+|+.|+++.|.|.
T Consensus       338 ~e~~~~~~~~~~~nl~~~~~G~~~~~~~~  366 (393)
T 2nac_A          338 LTAQARYAAGTREILECFFEGRPIRDEYL  366 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcceeE
Confidence            99999999999999999999999998764

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=1.5e-44  Score=346.69  Aligned_cols=202  Identities=28%  Similarity=0.446  Sum_probs=169.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|+|+++.   ..|.+|+|||+||||+|+||+.+|+++++|||++++|++.....   ..++.
T Consensus       113 ~~L~~~R~i~~~~~~~~~g~W~~~~---~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~  186 (404)
T 1sc6_A          113 ELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---LGNAT  186 (404)
T ss_dssp             HHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC---CTTCE
T ss_pred             HHHHHHhChHHHHHHHHcCCccccC---CCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc---cCCce
Confidence            567777777  44556679997543   34789999999999999999999999999999877776543321   11344


Q ss_pred             cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      .. +++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||++                     
T Consensus       187 ~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~---------------------  245 (404)
T 1sc6_A          187 QVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALAD---------------------  245 (404)
T ss_dssp             ECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHH---------------------
T ss_pred             ecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHH---------------------
Confidence            44 89999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCC----CCccccCCcEEEccCCC
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPL----DSPLLQLDNCVILPHIG  241 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~----~~~l~~~~nvi~tPH~~  241 (274)
                                                           +|++|+++||+||||++||+|.    ++|||.+|||++|||+|
T Consensus       246 -------------------------------------aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~  288 (404)
T 1sc6_A          246 -------------------------------------ALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG  288 (404)
T ss_dssp             -------------------------------------HHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCS
T ss_pred             -------------------------------------HHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCC
Confidence                                                 9999999999999999999875    57999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ++|.|++++++.++++|+.+|+.|+++.+.||+
T Consensus       289 ~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~vn~  321 (404)
T 1sc6_A          289 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF  321 (404)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSSS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCcceecc
Confidence            999999999999999999999999999999885

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.3e-44  Score=342.77  Aligned_cols=205  Identities=26%  Similarity=0.470  Sum_probs=178.9

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRG   84 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g   84 (274)
                      ++|++.|.+  .....++|.|+.... ...+.+|+|++|||||+|+||+.+|++|++||++ +++|+++..... +.+.|
T Consensus       130 ~~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g  208 (364)
T 2j6i_A          130 TMLVLVRNFVPAHEQIINHDWEVAAI-AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG  208 (364)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHH-HTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT
T ss_pred             HHHHHHhChHHHHHHHHhCCCCcCcc-cCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC
Confidence            567777776  445566799963110 1246899999999999999999999999999997 777765544444 55667


Q ss_pred             Cccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          85 AEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        85 ~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      +... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                   
T Consensus       209 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~-------------------  269 (364)
T 2j6i_A          209 ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAA-------------------  269 (364)
T ss_dssp             EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHH-------------------
T ss_pred             cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHH-------------------
Confidence            6655 89999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccC--C---cEEEcc
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQL--D---NCVILP  238 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~--~---nvi~tP  238 (274)
                                                             +|++|+|+||+||||++||+|.++|||.+  |   ||++||
T Consensus       270 ---------------------------------------aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTP  310 (364)
T 2j6i_A          270 ---------------------------------------ALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTP  310 (364)
T ss_dssp             ---------------------------------------HHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECC
T ss_pred             ---------------------------------------HHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECC
Confidence                                                   99999999999999999999999999999  9   999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCC---CCCCcc
Q psy3240         239 HIGSAQIETRQEMARITAQNIINTFHNK---PMIYEV  272 (274)
Q Consensus       239 H~~~~t~~~~~~~~~~~~~ni~~~~~g~---~~~~~v  272 (274)
                      |+|++|.+++.+++..+++|+.+|+.|+   ++.|.|
T Consensus       311 Hia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v  347 (364)
T 2j6i_A          311 HYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDII  347 (364)
T ss_dssp             SCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEE
T ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCcee
Confidence            9999999999999999999999999999   445544

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=4e-44  Score=335.11  Aligned_cols=203  Identities=28%  Similarity=0.405  Sum_probs=176.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|. |.. ...|.+|.|++|||||+|.||+.+|+++++||+++++|+++.... .. ..+.
T Consensus       113 l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~  188 (331)
T 1xdw_A          113 QAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG-IE-DYCT  188 (331)
T ss_dssp             HHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS-CT-TTCE
T ss_pred             HHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH-HH-hccc
Confidence            456677776  34455678885 422 245789999999999999999999999999999877776554332 21 2244


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|++                      
T Consensus       189 ~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~----------------------  246 (331)
T 1xdw_A          189 QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIE----------------------  246 (331)
T ss_dssp             ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHH----------------------
T ss_pred             cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHH----------------------
Confidence            5689999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC--CCC-----------CccccC-C
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL--PLD-----------SPLLQL-D  232 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~--~~~-----------~~l~~~-~  232 (274)
                                                          +|++|+|+||+||||++||+  |.+           +|||++ |
T Consensus       247 ------------------------------------aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~  290 (331)
T 1xdw_A          247 ------------------------------------AVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYP  290 (331)
T ss_dssp             ------------------------------------HHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTT
T ss_pred             ------------------------------------HHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCC
Confidence                                                99999999999999999994  333           379999 9


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      ||++|||+|++|.+++.++...+++|+.+|+.|+++.|.||
T Consensus       291 nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          291 RVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             TEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             CEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999886

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=332.91  Aligned_cols=200  Identities=26%  Similarity=0.471  Sum_probs=172.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+..   ...|.+|.|++|||||+|.||+++|+++++||+++++|+++.....+...|+.
T Consensus       133 l~L~~~R~~~~~~~~~~~g~W~~~---~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~  209 (335)
T 2g76_A          133 MIMCLARQIPQATASMKDGKWERK---KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQ  209 (335)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCCTG---GGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCE
T ss_pred             HHHHHHhchHHHHHHHHcCCCCcc---CCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce
Confidence            467777777  4445567999642   23578999999999999999999999999999987777655443225567777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                      
T Consensus       210 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~----------------------  267 (335)
T 2g76_A          210 QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR----------------------  267 (335)
T ss_dssp             ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHH----------------------
T ss_pred             eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHH----------------------
Confidence            7799999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          +|++|+|+||+||||+.|| +.++|||++|||++|||++++|.+
T Consensus       268 ------------------------------------aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~~~~t~e  310 (335)
T 2g76_A          268 ------------------------------------ALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKE  310 (335)
T ss_dssp             ------------------------------------HHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSCTTCBHH
T ss_pred             ------------------------------------HHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcCCCCCHH
Confidence                                                9999999999999999999 578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCC
Q psy3240         247 TRQEMARITAQNIINTFHNKPMIY  270 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g~~~~~  270 (274)
                      ++.+++..+++|+.+|+.|+++.|
T Consensus       311 ~~~~~~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          311 AQSRCGEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=4.9e-43  Score=325.38  Aligned_cols=200  Identities=40%  Similarity=0.679  Sum_probs=179.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+.|.+..+.|.++.|++|||||+|.||+.+|++++++|+++++|+++.... .    +.
T Consensus       109 ~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~----~~  183 (311)
T 2cuk_A          109 LLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPL-P----YP  183 (311)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-S----SC
T ss_pred             HHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCccc-c----cc
Confidence            567777777  4455677999766544456789999999999999999999999999999776666544332 1    34


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.+                      
T Consensus       184 ~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~----------------------  241 (311)
T 2cuk_A          184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE----------------------  241 (311)
T ss_dssp             BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH----------------------
T ss_pred             cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHH----------------------
Confidence            5589999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          +|+ |+|.||+||||++||++.++|||++|||++|||++++|.+
T Consensus       242 ------------------------------------aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~  284 (311)
T 2cuk_A          242 ------------------------------------ALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRT  284 (311)
T ss_dssp             ------------------------------------HHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHH
T ss_pred             ------------------------------------HHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHH
Confidence                                                999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240         247 TRQEMARITAQNIINTFHNKPMIYEV  272 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g~~~~~~v  272 (274)
                      ++.++...+++|+.+|+.|+++.|.|
T Consensus       285 ~~~~~~~~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          285 TRERMAEVAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence            99999999999999999999998876

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.5e-44  Score=335.13  Aligned_cols=204  Identities=27%  Similarity=0.392  Sum_probs=176.9

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|. |.. ...|.+|.|++|||||+|.||+.+|+++++||+++++|+++.... .. ..+.
T Consensus       112 l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~  187 (333)
T 1dxy_A          112 DTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-DH-PDFD  187 (333)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-CC-TTCE
T ss_pred             HHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hccc
Confidence            567777777  44455678884 411 235789999999999999999999999999999877776554432 21 2244


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                      
T Consensus       188 ~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~----------------------  245 (333)
T 1dxy_A          188 YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLS----------------------  245 (333)
T ss_dssp             ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHH----------------------
T ss_pred             cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHH----------------------
Confidence            5689999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC--CC--------C---CccccCCc
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL--PL--------D---SPLLQLDN  233 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~--~~--------~---~~l~~~~n  233 (274)
                                                          +|++|+|+||+||||++||+  |.        +   +|||++||
T Consensus       246 ------------------------------------aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~n  289 (333)
T 1dxy_A          246 ------------------------------------NLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN  289 (333)
T ss_dssp             ------------------------------------HHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTT
T ss_pred             ------------------------------------HHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCC
Confidence                                                99999999999999999993  21        1   58999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         234 CVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       234 vi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      |++|||+|++|.+++.+++..+++|+.+|+.|+++.|.|++
T Consensus       290 vi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (333)
T 1dxy_A          290 VVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG  330 (333)
T ss_dssp             EEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEECC
T ss_pred             EEECCccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeCC
Confidence            99999999999999999999999999999999999999874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8.1e-43  Score=324.93  Aligned_cols=202  Identities=28%  Similarity=0.528  Sum_probs=179.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeC-CCCChhHhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTS-RSKKPEADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~-r~~~~~a~~~g~   85 (274)
                      ++|++.|.+  .....++|.|+.|.+....|.+|.|++|||||+|.||+++|++++++|+++++|++ +.....+.+.|+
T Consensus       111 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~  190 (320)
T 1gdh_A          111 LLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQA  190 (320)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCc
Confidence            567777777  45566789997665444567899999999999999999999999999997777765 443322455677


Q ss_pred             ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      ... ++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.+                    
T Consensus       191 ~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~--------------------  250 (320)
T 1gdh_A          191 TFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVA--------------------  250 (320)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHH--------------------
T ss_pred             EEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHH--------------------
Confidence            776 89999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ  244 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t  244 (274)
                                                            +|++|+|.||+|||+++|| |.++|||++|||++|||++++|
T Consensus       251 --------------------------------------aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t  291 (320)
T 1gdh_A          251 --------------------------------------ALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAA  291 (320)
T ss_dssp             --------------------------------------HHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCB
T ss_pred             --------------------------------------HHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCc
Confidence                                                  9999999999999999999 8899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3240         245 IETRQEMARITAQNIINTFHNKPMIY  270 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~~~~  270 (274)
                      .+++.++...+ +|+.+|+.|+++..
T Consensus       292 ~~~~~~~~~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          292 TQAREDMAHQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHTTSCCT
T ss_pred             HHHHHHHHHHH-HHHHHHHcCCCCcc
Confidence            99999999999 99999999988653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.8e-43  Score=324.47  Aligned_cols=198  Identities=17%  Similarity=0.221  Sum_probs=176.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-   85 (274)
                      ++|++.|.+  .....++|.|+...    .+.+|.|++|||||+|.||+++|++|+++|+++++|+++.. ..    +. 
T Consensus        93 ~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~----~~~  163 (303)
T 1qp8_A           93 LLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG----PWR  163 (303)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS----SSC
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc----Ccc
Confidence            567777777  44556779996431    23589999999999999999999999999997766665443 21    33 


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|++                     
T Consensus       164 ~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~---------------------  222 (303)
T 1qp8_A          164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLR---------------------  222 (303)
T ss_dssp             CBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             cCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHH---------------------
Confidence            33589999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccC-CCCCCCCCCccccCCcEEEccCCCCC-
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVM-YPEPLPLDSPLLQLDNCVILPHIGSA-  243 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~-~~ep~~~~~~l~~~~nvi~tPH~~~~-  243 (274)
                                                           +|++|+|.||+|||| ++||+|+++|||++|||++|||+++. 
T Consensus       223 -------------------------------------aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~  265 (303)
T 1qp8_A          223 -------------------------------------ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY  265 (303)
T ss_dssp             -------------------------------------HHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSS
T ss_pred             -------------------------------------HHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCC
Confidence                                                 999999999999999 88999999999999999999999998 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         244 -QIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       244 -t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                       |.++++++...+++|+.+|+.|+++.|.|+
T Consensus       266 ~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          266 GNERVWRQMVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence             999999999999999999999999999886

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.9e-43  Score=323.29  Aligned_cols=196  Identities=36%  Similarity=0.576  Sum_probs=175.4

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+..   ...|.+|.|++|||||+|.||+++|++++++|+++++|+++..+..+.+.|+.
T Consensus       110 ~~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~  186 (307)
T 1wwk_A          110 LMFSVARKIAFADRKMREGVWAKK---EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGK  186 (307)
T ss_dssp             HHHHHHTTHHHHHHHHTTTCCCTT---TCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCcc---CcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcc
Confidence            567777777  4445567899642   23578999999999999999999999999999987777665443225566777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|++                      
T Consensus       187 ~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~----------------------  244 (307)
T 1wwk_A          187 FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVK----------------------  244 (307)
T ss_dssp             ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHH----------------------
T ss_pred             ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHH----------------------
Confidence            7799999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          +|++|+|.||+||||++||+|.++|||++|||++|||++++|.+
T Consensus       245 ------------------------------------aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~  288 (307)
T 1wwk_A          245 ------------------------------------ALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVE  288 (307)
T ss_dssp             ------------------------------------HHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHH
T ss_pred             ------------------------------------HHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHH
Confidence                                                99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q psy3240         247 TRQEMARITAQNIINTFHN  265 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g  265 (274)
                      ++.++...+++|+.+|+.|
T Consensus       289 ~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          289 AQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999976

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=9.9e-43  Score=323.41  Aligned_cols=197  Identities=29%  Similarity=0.468  Sum_probs=176.3

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+.     ..|.++.|++|||||+|.||+++|++++++|+++++|+++.....+...|+.
T Consensus       112 ~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~  186 (313)
T 2ekl_A          112 LMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK  186 (313)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCce
Confidence            567777777  445566799962     3468999999999999999999999999999977777655443225566777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.+                      
T Consensus       187 ~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~----------------------  244 (313)
T 2ekl_A          187 AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD----------------------  244 (313)
T ss_dssp             ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHH----------------------
T ss_pred             ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHH----------------------
Confidence            6799999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCC---ccccCCcEEEccCCCCC
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDS---PLLQLDNCVILPHIGSA  243 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~---~l~~~~nvi~tPH~~~~  243 (274)
                                                          +|++|+|.||+|||+++||++ ++   |||++|||++|||++++
T Consensus       245 ------------------------------------aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~  287 (313)
T 2ekl_A          245 ------------------------------------YIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQ  287 (313)
T ss_dssp             ------------------------------------HHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTC
T ss_pred             ------------------------------------HHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcC
Confidence                                                999999999999999999998 56   99999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy3240         244 QIETRQEMARITAQNIINTFHNKPMI  269 (274)
Q Consensus       244 t~~~~~~~~~~~~~ni~~~~~g~~~~  269 (274)
                      |.++.+++...+++|+.+|+.|+|++
T Consensus       288 t~~~~~~~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          288 TKEAQKRVAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=7.2e-42  Score=319.26  Aligned_cols=208  Identities=44%  Similarity=0.768  Sum_probs=187.8

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|++.|.+  .....++|.|.+|.+..+.|.+|.|++|||||+|.||+.+|++++++|+++++|+++..... ....++
T Consensus       120 ~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          120 LLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTC
T ss_pred             HHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCc
Confidence            566777776  44556679998766555668999999999999999999999999999998888887665444 445566


Q ss_pred             cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      ...++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||+++|+++|.+                     
T Consensus       200 ~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~---------------------  258 (330)
T 2gcg_A          200 EFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQ---------------------  258 (330)
T ss_dssp             EECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             eeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHH---------------------
Confidence            66699999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           +|++|++.||+||||.+||++.++|||.++||++|||+|+.|.
T Consensus       259 -------------------------------------aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~  301 (330)
T 2gcg_A          259 -------------------------------------ALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATH  301 (330)
T ss_dssp             -------------------------------------HHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBH
T ss_pred             -------------------------------------HHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcH
Confidence                                                 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      ++..++...+++|+.+|++|+++.|.||+
T Consensus       302 ~~~~~~~~~~~~n~~~~~~g~~~~~~v~~  330 (330)
T 2gcg_A          302 RTRNTMSLLAANNLLAGLRGEPMPSELKL  330 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCTTEECC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999986

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.1e-41  Score=320.97  Aligned_cols=207  Identities=27%  Similarity=0.404  Sum_probs=177.8

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCC---CCCCC-CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAP---NFMCG-PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK   82 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~---~~~~g-~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~   82 (274)
                      ++|++.|.+  .....++|.|.....   .+..| .+|+|++|||||+|.||+.+|++|+++|+++++|+++..+..+..
T Consensus       129 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~  208 (347)
T 1mx3_A          129 HILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA  208 (347)
T ss_dssp             HHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH
T ss_pred             HHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhh
Confidence            677777877  344556788843110   00113 689999999999999999999999999998777765544332445


Q ss_pred             cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccc
Q psy3240          83 RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK  161 (274)
Q Consensus        83 ~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~  161 (274)
                      .|+... +++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                 
T Consensus       209 ~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~-----------------  271 (347)
T 1mx3_A          209 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQ-----------------  271 (347)
T ss_dssp             HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHH-----------------
T ss_pred             cCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHH-----------------
Confidence            677654 89999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCC-CCCccccCCcEEEccCC
Q psy3240         162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLP-LDSPLLQLDNCVILPHI  240 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~-~~~~l~~~~nvi~tPH~  240 (274)
                                                               +|++|+|.||+|||++.||++ .++||+.+||+++|||+
T Consensus       272 -----------------------------------------aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHi  310 (347)
T 1mx3_A          272 -----------------------------------------ALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHA  310 (347)
T ss_dssp             -----------------------------------------HHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSC
T ss_pred             -----------------------------------------HHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchH
Confidence                                                     999999999999999999987 47999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCC---Cccc
Q psy3240         241 GSAQIETRQEMARITAQNIINTFHNKPMI---YEVP  273 (274)
Q Consensus       241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~~~---~~v~  273 (274)
                      +++|.+++.+|...+++|+.+|+.|+++.   |.|+
T Consensus       311 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~  346 (347)
T 1mx3_A          311 AWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN  346 (347)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCC
Confidence            99999999999999999999999998654   7775

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5e-42  Score=316.31  Aligned_cols=189  Identities=23%  Similarity=0.338  Sum_probs=165.4

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|+..|.+  .....++|+|... +    .++|+|+||||||+|.||+++|++|++||+++++|+++.....    ...
T Consensus        92 ~~L~~~R~~~~~~~~~~~g~w~~~-~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~~~  162 (290)
T 3gvx_A           92 LLLAHAKNILENNELMKAGIFRQS-P----TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN----VDV  162 (290)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCC-C----CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT----CSE
T ss_pred             HHHHHHHhhhhhhhHhhhcccccC-C----ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc----ccc
Confidence            456677776  4455667999753 1    2789999999999999999999999999998777765543322    133


Q ss_pred             cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                      .. +++|++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++                     
T Consensus       163 ~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~---------------------  221 (290)
T 3gvx_A          163 ISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIG---------------------  221 (290)
T ss_dssp             ECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             ccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhh---------------------
Confidence            44 89999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC-CCc
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG-SAQ  244 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~-~~t  244 (274)
                                                           +|++|++.||+||||++||+   +|||++|||++|||+| ++|
T Consensus       222 -------------------------------------aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t  261 (290)
T 3gvx_A          222 -------------------------------------FLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMS  261 (290)
T ss_dssp             -------------------------------------HHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBT
T ss_pred             -------------------------------------hhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCcc
Confidence                                                 99999999999999999998   8999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Q psy3240         245 IETRQEMARITAQNIINTFHNKP  267 (274)
Q Consensus       245 ~~~~~~~~~~~~~ni~~~~~g~~  267 (274)
                      .++.+++..++++||.+|++|+-
T Consensus       262 ~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          262 GEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TBCCHHHHHHHHHHHHHHTC---
T ss_pred             chHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999999999999874

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=4.8e-41  Score=314.95  Aligned_cols=200  Identities=33%  Similarity=0.597  Sum_probs=177.3

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|+. . ....|.+|.|++|||||+|.||+.+|++++++|+++++|+++....    .++.
T Consensus       131 l~L~~~R~~~~~~~~~~~g~w~~-~-~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~----~g~~  204 (333)
T 3ba1_A          131 LILAVLRRICECDKYVRRGAWKF-G-DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN----TNYT  204 (333)
T ss_dssp             HHHHHHTTHHHHHHHHHTTGGGG-C-CCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT----CCSE
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCc-c-ccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc----cCce
Confidence            567777777  445566799963 2 2235789999999999999999999999999999877766544322    2444


Q ss_pred             -ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240          87 -HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR  165 (274)
Q Consensus        87 -~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~  165 (274)
                       ..++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.++|+++|++                     
T Consensus       205 ~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~---------------------  263 (333)
T 3ba1_A          205 YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVS---------------------  263 (333)
T ss_dssp             EESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHH---------------------
T ss_pred             ecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHH---------------------
Confidence             3489999999999999999999999999999999999999999999999999999999                     


Q ss_pred             eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240         166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~  245 (274)
                                                           +|++|+++||+||||++||+|. +|||.+|||++|||+++.|.
T Consensus       264 -------------------------------------aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~  305 (333)
T 3ba1_A          264 -------------------------------------ALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTV  305 (333)
T ss_dssp             -------------------------------------HHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSH
T ss_pred             -------------------------------------HHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCH
Confidence                                                 9999999999999999999877 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         246 ETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      +++.+++..+++|+.+|+.|+++.|.||
T Consensus       306 e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          306 ETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999986

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=4.4e-41  Score=316.48  Aligned_cols=207  Identities=28%  Similarity=0.425  Sum_probs=180.7

Q ss_pred             HHHHHHhhh--ccchhccCC---CCccCC-CCCCCCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-H
Q psy3240           9 IYIDVIKYV--STPVSCRGE---WKSWAP-NFMCGPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-A   80 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~---w~~~~~-~~~~g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a   80 (274)
                      ++|++.|.+  .....++|.   |..... ....|.+|+|++|||||+|.||+.+|++++ ++|+++++|+++..... +
T Consensus       124 l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~  203 (348)
T 2w2k_A          124 LILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE  203 (348)
T ss_dssp             HHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH
T ss_pred             HHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH
Confidence            567788877  445566788   842110 113468999999999999999999999999 99997776665544443 4


Q ss_pred             hhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcc
Q psy3240          81 DKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTN  159 (274)
Q Consensus        81 ~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~  159 (274)
                      .+.|+... ++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||+++|+++|.+               
T Consensus       204 ~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~---------------  268 (348)
T 2w2k_A          204 KALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIA---------------  268 (348)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHH---------------
T ss_pred             hhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHH---------------
Confidence            44577766 89999999999999999999999999999999999999999999999999999999               


Q ss_pred             cccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccC
Q psy3240         160 EKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPH  239 (274)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH  239 (274)
                                                                 +|++|+|.||++|||++|| +.++||+.+|||++|||
T Consensus       269 -------------------------------------------aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH  304 (348)
T 2w2k_A          269 -------------------------------------------ALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTH  304 (348)
T ss_dssp             -------------------------------------------HHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCS
T ss_pred             -------------------------------------------HHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCc
Confidence                                                       9999999999999999999 67889999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         240 IGSAQIETRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       240 ~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      +++.|.+++.+++..+++||.+|+.|+++.|.|+.
T Consensus       305 ~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~~  339 (348)
T 2w2k_A          305 IGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAG  339 (348)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSBCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHcCCCCcceecc
Confidence            99999999999999999999999999999999874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=8e-41  Score=312.80  Aligned_cols=206  Identities=37%  Similarity=0.611  Sum_probs=182.4

Q ss_pred             HHHHHHhhh--ccchhccCCCC----ccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK   82 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~----~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~   82 (274)
                      ++|++.|.+  .....++|.|.    .|.+..+.|.+|.|++|||||+|.||+.+|++++++|+++++|+++.....+..
T Consensus       111 ~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~  190 (334)
T 2dbq_A          111 LLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERE  190 (334)
T ss_dssp             HHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhh
Confidence            567777877  44556678996    454444557899999999999999999999999999997777665544322445


Q ss_pred             cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240          83 RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus        83 ~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                      .|+...++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.++|+++|.+                  
T Consensus       191 ~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~------------------  252 (334)
T 2dbq_A          191 LNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVK------------------  252 (334)
T ss_dssp             HCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHH------------------
T ss_pred             cCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHH------------------
Confidence            57766789999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                                                              +|++|+++||++|||.+|| +.++||+.+|||++|||+++
T Consensus       253 ----------------------------------------aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~  291 (334)
T 2dbq_A          253 ----------------------------------------ALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGS  291 (334)
T ss_dssp             ----------------------------------------HHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTT
T ss_pred             ----------------------------------------HHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCC
Confidence                                                    8999999999999999999 88999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         243 AQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       243 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      .|.++..++...+++|+.+|+.|+++.+.|+
T Consensus       292 ~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          292 ASFGAREGMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCccccC
Confidence            9999999999999999999999999999886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=9e-41  Score=312.65  Aligned_cols=204  Identities=28%  Similarity=0.531  Sum_probs=179.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCC----CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCG----PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK   82 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g----~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~   82 (274)
                      ++|++.|.+  .....++|.|+.|. ....|    .+|.|++|||||+|.||+.+|++++++|+++++|+++.....+..
T Consensus       108 ~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~  186 (333)
T 2d0i_A          108 LIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKE  186 (333)
T ss_dssp             HHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhh
Confidence            567777777  44556679996532 11235    799999999999999999999999999997777665544322445


Q ss_pred             cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240          83 RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus        83 ~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                      .|+...++++++++||+|++|+|.+++|+++++++.++.||+| ++||+|||.++|+++|++                  
T Consensus       187 ~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~------------------  247 (333)
T 2d0i_A          187 LKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTE------------------  247 (333)
T ss_dssp             HTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHH------------------
T ss_pred             cCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHH------------------
Confidence            5666668999999999999999999999999999999999999 999999999999999999                  


Q ss_pred             ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCC-cEEEccCCC
Q psy3240         163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLD-NCVILPHIG  241 (274)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~-nvi~tPH~~  241 (274)
                                                              +|++|++.||++|||.+||+| ++||+.+| ||++|||++
T Consensus       248 ----------------------------------------aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~  286 (333)
T 2d0i_A          248 ----------------------------------------AIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYA  286 (333)
T ss_dssp             ----------------------------------------HHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCT
T ss_pred             ----------------------------------------HHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccC
Confidence                                                    999999999999999999998 99999999 999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240         242 SAQIETRQEMARITAQNIINTFHNKPMIYEVP  273 (274)
Q Consensus       242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  273 (274)
                      +.|.++..++...+++|+.+|+.|+++.|.|+
T Consensus       287 ~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v~  318 (333)
T 2d0i_A          287 GLALEAQEDVGFRAVENLLKVLRGEVPEDLVN  318 (333)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCcCccC
Confidence            99999999999999999999999999999886

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=3.5e-39  Score=307.16  Aligned_cols=168  Identities=27%  Similarity=0.398  Sum_probs=151.7

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcc----cHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPD----THH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~----T~~  112 (274)
                      |.+|+||||||||+|+||+++|++|++|||++++|++. .  .....+....+++|++++||+|++|+|++++    |++
T Consensus       114 g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~-~--~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~  190 (381)
T 3oet_A          114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPP-R--AARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLH  190 (381)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHH-H--HHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTT
T ss_pred             CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC-h--HHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchh
Confidence            46899999999999999999999999999977777542 1  1122344567999999999999999999999    999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                      +++++.|++||+|++|||+|||++||++||++                                                
T Consensus       191 li~~~~l~~mk~gailIN~aRG~vvde~aL~~------------------------------------------------  222 (381)
T 3oet_A          191 LADETLIRRLKPGAILINACRGPVVDNAALLA------------------------------------------------  222 (381)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCGGGBCHHHHHH------------------------------------------------
T ss_pred             hcCHHHHhcCCCCcEEEECCCCcccCHHHHHH------------------------------------------------
Confidence            99999999999999999999999999999999                                                


Q ss_pred             ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240         193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP  267 (274)
Q Consensus       193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~  267 (274)
                                ||++|++.||+||||++||+|. ++||.++ +++|||+|++|.|++.++..++++|+.+|+.+.+
T Consensus       223 ----------aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          223 ----------RLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             ----------HHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ----------HHHhCCCeEEEeeccccCCCCc-chhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence                      9999999999999999999875 5688765 8999999999999999999999999999998854

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=9.5e-38  Score=308.20  Aligned_cols=204  Identities=30%  Similarity=0.523  Sum_probs=181.4

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|++.|.+  .....++|.|++..   +.|.+|.|++|||||+|+||+++|++|+++|+++++|+++.....+.+.|+.
T Consensus       110 ~~l~~~R~~~~~~~~~~~g~w~~~~---~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~  186 (529)
T 1ygy_A          110 LLLAASRQIPAADASLREHTWKRSS---FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE  186 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCGGG---CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCE
T ss_pred             HHHHHHhhhHHHHHHHHhCCCcccC---cCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcE
Confidence            567777777  44556779997532   3578999999999999999999999999999987777665432225566877


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|.+                      
T Consensus       187 ~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~----------------------  244 (529)
T 1ygy_A          187 LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALAD----------------------  244 (529)
T ss_dssp             ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHH----------------------
T ss_pred             EcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHH----------------------
Confidence            7799999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE  246 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~  246 (274)
                                                          +|++|+++||++||+..||+ +++|||+++|+++|||+++.|.+
T Consensus       245 ------------------------------------al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~e  287 (529)
T 1ygy_A          245 ------------------------------------AITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAE  287 (529)
T ss_dssp             ------------------------------------HHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHH
T ss_pred             ------------------------------------HHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHH
Confidence                                                99999999999999999996 68999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240         247 TRQEMARITAQNIINTFHNKPMIYEVPL  274 (274)
Q Consensus       247 ~~~~~~~~~~~ni~~~~~g~~~~~~v~~  274 (274)
                      +.++++..+++|+.+++.|+++.+.|++
T Consensus       288 a~~~~~~~~~~~l~~~l~~~~~~~~v~~  315 (529)
T 1ygy_A          288 AQDRAGTDVAESVRLALAGEFVPDAVNV  315 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence            9999999999999999999998877763

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.1e-38  Score=299.22  Aligned_cols=170  Identities=27%  Similarity=0.396  Sum_probs=152.8

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcc----cHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPD----THH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~----T~~  112 (274)
                      |.+|+|++|||||+|+||+++|++|+++|+++++|+++..   ....+....++++++++||+|++|+|++++    |++
T Consensus       111 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~  187 (380)
T 2o4c_A          111 GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ---AREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRH  187 (380)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH---HHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTT
T ss_pred             hcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChh---hhccCcccCCHHHHHHhCCEEEEeccCccccccchhh
Confidence            4689999999999999999999999999997777654321   122344556999999999999999999999    999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                      +++++.|+.||+|+++||+|||+++|+++|++                                                
T Consensus       188 li~~~~l~~mk~gailIN~sRG~vvd~~aL~~------------------------------------------------  219 (380)
T 2o4c_A          188 LLDEPRLAALRPGTWLVNASRGAVVDNQALRR------------------------------------------------  219 (380)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHH------------------------------------------------
T ss_pred             hcCHHHHhhCCCCcEEEECCCCcccCHHHHHH------------------------------------------------
Confidence            99999999999999999999999999999999                                                


Q ss_pred             ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy3240         193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMI  269 (274)
Q Consensus       193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~  269 (274)
                                +|++|+|.||+||||++||+| +++|+. +||++|||+|++|.++..++..++++|+.+|+.|++..
T Consensus       220 ----------aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~  284 (380)
T 2o4c_A          220 ----------LLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERV  284 (380)
T ss_dssp             ----------HHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ----------HHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence                      999999999999999999975 456776 59999999999999999999999999999999998644

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.95  E-value=2.3e-29  Score=246.49  Aligned_cols=170  Identities=14%  Similarity=0.163  Sum_probs=147.6

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .|.++.|++|||||+|.||+.+|++|+++|+++++++++.... .+...|+...++++++++||+|++|+    .|+++|
T Consensus       271 ~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI  346 (494)
T 3d64_A          271 TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVI  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSB
T ss_pred             cccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----Cccccc
Confidence            4678999999999999999999999999999877776544332 23455777779999999999999997    688999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccc
Q psy3240         115 NRARLESMKPGAILINTSRGQL-VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVG  193 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  193 (274)
                      +++.|+.||+|++|||+|||++ ||+++| +                                                 
T Consensus       347 ~~~~l~~MK~gAilINvgrg~veID~~aL-~-------------------------------------------------  376 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHFDSEIDVAST-R-------------------------------------------------  376 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSSSCSBCCGGG-T-------------------------------------------------
T ss_pred             CHHHHhhCCCCcEEEEcCCCcchhchHHH-H-------------------------------------------------
Confidence            9999999999999999999999 599999 9                                                 


Q ss_pred             eeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccC--CcEEEccCCC-CCcHH-HHHHHHHHHHHHHHHHHcCCCCC
Q psy3240         194 IYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQL--DNCVILPHIG-SAQIE-TRQEMARITAQNIINTFHNKPMI  269 (274)
Q Consensus       194 ~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~--~nvi~tPH~~-~~t~~-~~~~~~~~~~~ni~~~~~g~~~~  269 (274)
                               ||++|+|+ +++|   .||+|.++|||.+  |||++| |+| +.+.+ +..+++.++++|+.+|++|+++.
T Consensus       377 ---------AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~  442 (494)
T 3d64_A          377 ---------QYQWENIK-PQVD---HIIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQTLAQIELFTRGGEYA  442 (494)
T ss_dssp             ---------TSEEEEEE-TTEE---EEECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             ---------hhhcCccc-eeEE---EEECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence                     89999998 5555   4588889999999  999999 999 55644 67789999999999999999998


Q ss_pred             Cccc
Q psy3240         270 YEVP  273 (274)
Q Consensus       270 ~~v~  273 (274)
                      +.|.
T Consensus       443 n~V~  446 (494)
T 3d64_A          443 NKVY  446 (494)
T ss_dssp             SSEE
T ss_pred             Ccee
Confidence            8873

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.95  E-value=2.2e-28  Score=238.74  Aligned_cols=173  Identities=14%  Similarity=0.176  Sum_probs=149.5

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .|.++.|++|||||+|.||+.+|++++++|+++++++++.... .+...|+...++++++++||+|++|+    .|+++|
T Consensus       251 ~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI  326 (479)
T 1v8b_A          251 TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVI  326 (479)
T ss_dssp             HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSB
T ss_pred             cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----Chhhhc
Confidence            4578999999999999999999999999999877776554332 24456777779999999999999995    788999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccc
Q psy3240         115 NRARLESMKPGAILINTSRGQL-VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVG  193 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  193 (274)
                      +++.|+.||+|++|||+|||++ ||+++|.+..                                               
T Consensus       327 ~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~-----------------------------------------------  359 (479)
T 1v8b_A          327 KLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYK-----------------------------------------------  359 (479)
T ss_dssp             CHHHHTTCCTTCEEEECSSTTTSBCHHHHHTST-----------------------------------------------
T ss_pred             CHHHHhhcCCCcEEEEeCCCCccccchhhhccc-----------------------------------------------
Confidence            9999999999999999999999 8999998811                                               


Q ss_pred             eeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccC--CcEEEccCCC-CCcHH-HHHHHHHHHHHHHHHHHcCC--C
Q psy3240         194 IYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQL--DNCVILPHIG-SAQIE-TRQEMARITAQNIINTFHNK--P  267 (274)
Q Consensus       194 ~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~--~nvi~tPH~~-~~t~~-~~~~~~~~~~~ni~~~~~g~--~  267 (274)
                               ||++|+|+ +++||+   |+|.++|||.+  ||+++| |+| +.+.+ ....++.++++|+..|++|+  +
T Consensus       360 ---------AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~  425 (479)
T 1v8b_A          360 ---------GIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL-GCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNK  425 (479)
T ss_dssp             ---------TCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             ---------cceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE-eccCCCCchhHHHHHHHHHHHHHHHHHcCCCCc
Confidence                     67889998 899998   66778999999  999999 999 56755 67788889999999999999  8


Q ss_pred             CCCccc
Q psy3240         268 MIYEVP  273 (274)
Q Consensus       268 ~~~~v~  273 (274)
                      +.|.|.
T Consensus       426 l~n~V~  431 (479)
T 1v8b_A          426 YENKVY  431 (479)
T ss_dssp             CCSSEE
T ss_pred             CCcceE
Confidence            888653

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.83  E-value=8e-22  Score=189.83  Aligned_cols=156  Identities=15%  Similarity=0.270  Sum_probs=126.2

Q ss_pred             CCCC-CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCE-EEEcCCCCcccHH
Q psy3240          36 CGPA-LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF-IIITSALTPDTHH  112 (274)
Q Consensus        36 ~g~~-L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDv-Vil~lPlt~~T~~  112 (274)
                      .|.+ |+|+||+|+|+|+||+.+|++|++ ||++++.++++.... ..   ....+++++++.+|. .++ +|+ ++|++
T Consensus       205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~-~~---~~gvdl~~L~~~~d~~~~l-~~l-~~t~~  278 (419)
T 1gtm_A          205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI-YN---PDGLNADEVLKWKNEHGSV-KDF-PGATN  278 (419)
T ss_dssp             TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-EE---EEEECHHHHHHHHHHHSSS-TTC-TTSEE
T ss_pred             hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc-cC---ccCCCHHHHHHHHHhcCEe-ecC-ccCee
Confidence            4677 999999999999999999999999 999877776554321 11   112367777765553 222 465 57778


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV  192 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  192 (274)
                       ++.+.|..||+ .++||++||.+||+++ ++                                                
T Consensus       279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~------------------------------------------------  307 (419)
T 1gtm_A          279 -ITNEELLELEV-DVLAPAAIEEVITKKN-AD------------------------------------------------  307 (419)
T ss_dssp             -ECHHHHHHSCC-SEEEECSCSCCBCTTG-GG------------------------------------------------
T ss_pred             -eCHHHHHhCCC-CEEEECCCcccCCHHH-HH------------------------------------------------
Confidence             78888999988 6999999999999999 57                                                


Q ss_pred             ceeeehhhhHHHhcCceeEEEeccCCCCCCCCC-CccccCCcEEEccCC----C-----------------CCcHHHHHH
Q psy3240         193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLD-SPLLQLDNCVILPHI----G-----------------SAQIETRQE  250 (274)
Q Consensus       193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~-~~l~~~~nvi~tPH~----~-----------------~~t~~~~~~  250 (274)
                                +|+++.|.+++     +||++++ ++|+..+||++|||+    |                 |.+.++..+
T Consensus       308 ----------aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~  372 (419)
T 1gtm_A          308 ----------NIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRER  372 (419)
T ss_dssp             ----------GCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             ----------HhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHH
Confidence                      88999999887     8998764 799999999999999    6                 667888999


Q ss_pred             HHHHHHHHHHHHH
Q psy3240         251 MARITAQNIINTF  263 (274)
Q Consensus       251 ~~~~~~~ni~~~~  263 (274)
                      +..++.+|+.+++
T Consensus       373 l~~~m~~~~~~~~  385 (419)
T 1gtm_A          373 LDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999889988887

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.81  E-value=2.2e-20  Score=183.13  Aligned_cols=171  Identities=16%  Similarity=0.111  Sum_probs=136.5

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..+.|++|+|+|+|.||+.+|++++++|++++++++...+.. +.+.|+...+++++++.+|+|+.|++    +.++++
T Consensus       269 ~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~  344 (494)
T 3ce6_A          269 DALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIM  344 (494)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBC
T ss_pred             CCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHH
Confidence            3578999999999999999999999999997666665443333 56678877789999999999999975    445788


Q ss_pred             HHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240         116 RARLESMKPGAILINTSRGQL-VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI  194 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  194 (274)
                      .+.++.||+|++++|+||++. +|.++|.+.                                                 
T Consensus       345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~~-------------------------------------------------  375 (494)
T 3ce6_A          345 LEHIKAMKDHAILGNIGHFDNEIDMAGLERS-------------------------------------------------  375 (494)
T ss_dssp             HHHHHHSCTTCEEEECSSSGGGBCHHHHHHT-------------------------------------------------
T ss_pred             HHHHHhcCCCcEEEEeCCCCCccCHHHHHHh-------------------------------------------------
Confidence            889999999999999999998 899988770                                                 


Q ss_pred             eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEE----EccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3240         195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCV----ILPHIGSAQIETRQEMARITAQNIINTFHNKPMIY  270 (274)
Q Consensus       195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi----~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  270 (274)
                              +|++++|. +++|+++.++....-.++..+|++    +|||+++.+.++   +...+++++..+.+|+++.+
T Consensus       376 --------aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~~qa~~ai~~~~~g~~~~~  443 (494)
T 3ce6_A          376 --------GATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FANQTIAQIELWTKNDEYDN  443 (494)
T ss_dssp             --------TCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HHHHHHHHHHHHHTGGGCCS
T ss_pred             --------hhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HHHHHHHHHHHHHcCCCCCC
Confidence                    45667777 567887654322222367788998    999999887754   46778999999999988766


Q ss_pred             cc
Q psy3240         271 EV  272 (274)
Q Consensus       271 ~v  272 (274)
                      .|
T Consensus       444 ~V  445 (494)
T 3ce6_A          444 EV  445 (494)
T ss_dssp             SE
T ss_pred             EE
Confidence            55

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.69  E-value=3.1e-16  Score=148.39  Aligned_cols=130  Identities=17%  Similarity=0.304  Sum_probs=104.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCc-------ccCHHHHhcccCEEEEcC--CC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAE-------HTNIDDLCKQSDFIIITS--AL  106 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~-------~~sl~ell~~aDvVil~l--Pl  106 (274)
                      .++.|++|+|+|+|.||+.+|+.++++|+++++++++..+.+ +.+ .|..       ..+++++++++|+|+.++  |.
T Consensus       164 ~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          164 PGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            479999999999999999999999999997777776544333 332 4543       236778899999999977  54


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeec
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHM  186 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (274)
                      + ++.++++++.++.||+|+++||+|.          .                                          
T Consensus       244 ~-~t~~li~~~~l~~mk~g~~iV~va~----------~------------------------------------------  270 (377)
T 2vhw_A          244 A-KAPKLVSNSLVAHMKPGAVLVDIAI----------D------------------------------------------  270 (377)
T ss_dssp             S-CCCCCBCHHHHTTSCTTCEEEEGGG----------G------------------------------------------
T ss_pred             C-CCcceecHHHHhcCCCCcEEEEEec----------C------------------------------------------
Confidence            4 6888999999999999999999982          1                                          


Q ss_pred             ccCCccceeeehhhhHHHhcCceeEEEeccCCC-CCCCCCCccccCCcEE--EccCCCCCcHH
Q psy3240         187 IMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP-EPLPLDSPLLQLDNCV--ILPHIGSAQIE  246 (274)
Q Consensus       187 i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~-ep~~~~~~l~~~~nvi--~tPH~~~~t~~  246 (274)
                                         .|   |    |++. ||++.++|++..+||+  +|||+++.+..
T Consensus       271 -------------------~G---g----v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          271 -------------------QG---G----CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             -------------------TT---C----SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             -------------------CC---C----ccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence                               11   0    5666 8888899999999998  99999999865

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.68  E-value=4.7e-17  Score=157.36  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+|.||+|+|+|+|.||+.+|+++++|||++++++..+.... +...|+...++++++++||+|+++.    .|+++|+
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~  317 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVIT  317 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBC
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccC
Confidence            5789999999999999999999999999997766654332222 4456777789999999999999864    4678999


Q ss_pred             HHHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      ++.|+.||+|++|||+|||.+ +|.++|.+
T Consensus       318 ~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          318 IDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             HHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             HHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            999999999999999999998 89988875

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.66  E-value=1.3e-16  Score=154.02  Aligned_cols=104  Identities=14%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.|++|+|+|+|.||+.+|++|+++|++++++++...... +...|+...+++|++++||+|++    ++.|+++++
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~  281 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIIT  281 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBC
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccC
Confidence            5789999999999999999999999999997776665433322 45678777899999999999997    447888999


Q ss_pred             HHHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      ++.|+.||+|++|||+|||.+ +|.++|.+
T Consensus       282 ~e~l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          282 SEHFPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             TTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             HHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            999999999999999999997 89999987

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.65  E-value=1.7e-15  Score=140.05  Aligned_cols=172  Identities=17%  Similarity=0.133  Sum_probs=112.6

Q ss_pred             ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc--c-cCHH
Q psy3240          18 STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE--H-TNID   91 (274)
Q Consensus        18 ~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~--~-~sl~   91 (274)
                      +.....++.|.+...+.+  .++..++|||||+|.||+++|+.|+..|.  ++++|+++....+ +.+.|+.  . .+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~--~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~   88 (314)
T 3ggo_A           11 SSGLVPRGSHMKNIIKIL--KSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA   88 (314)
T ss_dssp             --------------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT
T ss_pred             ccCccccccCcCcCCchh--hhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH
Confidence            444566788865332222  34556899999999999999999999998  7777765543333 5556662  2 4788


Q ss_pred             H-HhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecC
Q psy3240          92 D-LCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLG  170 (274)
Q Consensus        92 e-ll~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~  170 (274)
                      + ++++||+|++|+|.. .+..++ ++..+.++++++++|+++.+....+++.+.+.                       
T Consensus        89 ~~~~~~aDvVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~-----------------------  143 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILG-----------------------  143 (314)
T ss_dssp             GGGGGCCSEEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG-----------------------
T ss_pred             HHhhccCCEEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcC-----------------------
Confidence            8 899999999999965 345555 46677799999999999887655556555221                       


Q ss_pred             CCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHH
Q psy3240         171 DSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQE  250 (274)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~  250 (274)
                              ..|++.||++|.+             .+|.-.             +...|+....+++||+-+. +.++.+.
T Consensus       144 --------~~~v~~hPm~G~e-------------~sG~~~-------------A~~~Lf~g~~~il~~~~~~-~~~~~~~  188 (314)
T 3ggo_A          144 --------KRFVGGHPIAGTE-------------KSGVEY-------------SLDNLYEGKKVILTPTKKT-DKKRLKL  188 (314)
T ss_dssp             --------GGEECEEECCCCC-------------CCSGGG-------------CCTTTTTTCEEEECCCTTS-CHHHHHH
T ss_pred             --------CCEEecCcccCCc-------------ccchhh-------------hhhhhhcCCEEEEEeCCCC-CHHHHHH
Confidence                    2689999999987             344332             3467889999999998443 4444444


Q ss_pred             H
Q psy3240         251 M  251 (274)
Q Consensus       251 ~  251 (274)
                      +
T Consensus       189 v  189 (314)
T 3ggo_A          189 V  189 (314)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.61  E-value=5.6e-16  Score=142.70  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=98.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH--HH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR--AR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~--~~  118 (274)
                      ++||+||+|.||..||++|.+.|.++++|+++..+.+ ..+.|+..+ ++.|+++.||+|++|+|..++++.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            6899999999999999999999997777765444433 556788765 8999999999999999999998888742  47


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.+++|.++||+++..+-+...+.+.++++|+.|+|+
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEec
Confidence            88899999999999999999999999999999999994

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.60  E-value=1.1e-15  Score=147.39  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=87.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..+.|++|+|+|+|.||+.+|++|+++|+++++++.+..+.. +...|+...++++++++||+|++|    +.|+++|+
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~  290 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVT  290 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBC
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCC
Confidence            4689999999999999999999999999997666654432222 456677777999999999999995    46788999


Q ss_pred             HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q psy3240         116 RARLESMKPGAILINTSRGQL-VDQEALI  143 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~i-Vde~aL~  143 (274)
                      ++.|+.||+|+++||+|||++ +|.++|.
T Consensus       291 ~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          291 REHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             HHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             HHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            999999999999999999998 6777664

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.59  E-value=3.3e-15  Score=136.56  Aligned_cols=114  Identities=15%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc---cCHHHHhcccCEEEEcCCCCcccH
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH---TNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|.++.|++|||||+|.||+.+|++|+++|+++++++++..+.. ..+.|+..   .++++++++||+|++|+|.     
T Consensus       151 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----  225 (300)
T 2rir_A          151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----  225 (300)
T ss_dssp             CSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----
T ss_pred             cCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----
Confidence            46799999999999999999999999999997777776543322 33456542   4789999999999999997     


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                      ++++++.++.||+++++||++||..-..  + +..+..|+.++|+.
T Consensus       226 ~~i~~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~p  268 (300)
T 2rir_A          226 MILNQTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAP  268 (300)
T ss_dssp             CCBCHHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred             hhhCHHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECC
Confidence            6788889999999999999999754321  2 33344566555443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.59  E-value=1.8e-15  Score=138.85  Aligned_cols=115  Identities=15%  Similarity=0.158  Sum_probs=98.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      +||||||+|.||..||++|...|.++++|+++..+.+ ..+.|+..+ ++.|+++.||+|++|+|..+..+.++..+.++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            6899999999999999999999998777776555444 556677765 89999999999999999888888888888999


Q ss_pred             cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         121 SMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       121 ~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                      .++++.++||+++..+-..+.+.+.++++|+.|+|+-
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldap  122 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAP  122 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCC
Confidence            9999999999999999999999999999999999953

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.58  E-value=3.8e-15  Score=135.91  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=85.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc---cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH---TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      |.++.|++|||||+|.||+.+|++|+++|+++++++++..+.. ..+.|+..   .++++++++||+|++|+|.     +
T Consensus       150 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  224 (293)
T 3d4o_A          150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----L  224 (293)
T ss_dssp             SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----C
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----H
Confidence            5689999999999999999999999999997777765543322 34456653   3788999999999999996     6


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhhhheee
Q psy3240         113 LINRARLESMKPGAILINTSRGQL-VDQEALIDFIADIRVISI  154 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~~i~~~  154 (274)
                      +++++.++.||+++++||++||.. ++.    +..+..|+.++
T Consensus       225 ~i~~~~l~~mk~~~~lin~ar~~~~~~~----~~a~~~Gv~~~  263 (293)
T 3d4o_A          225 VVTANVLAEMPSHTFVIDLASKPGGTDF----RYAEKRGIKAL  263 (293)
T ss_dssp             CBCHHHHHHSCTTCEEEECSSTTCSBCH----HHHHHHTCEEE
T ss_pred             HhCHHHHHhcCCCCEEEEecCCCCCCCH----HHHHHCCCEEE
Confidence            788899999999999999999754 333    33344455544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.57  E-value=2.7e-15  Score=141.23  Aligned_cols=158  Identities=18%  Similarity=0.342  Sum_probs=107.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCc-------ccCHHHHhcccCEEEEcCCCCc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAE-------HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~-------~~sl~ell~~aDvVil~lPlt~  108 (274)
                      .++.+++|+|+|.|.||+.+|+.++++|+++++++++..+.+ ..+ .+..       ..+++++++.+|+|+.+++...
T Consensus       162 ~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          162 PGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             TBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            479999999999999999999999999998777776544333 222 4442       2257788899999999999765


Q ss_pred             -ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecc
Q psy3240         109 -DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMI  187 (274)
Q Consensus       109 -~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  187 (274)
                       .+..++.++.++.||+|+++||++.          .                                           
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~----------~-------------------------------------------  268 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAV----------D-------------------------------------------  268 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC-------------------------------------------------------
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEec----------C-------------------------------------------
Confidence             5777889999999999999999982          1                                           


Q ss_pred             cCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEE---------EccCCCCC--cHHHHHHHHHHHH
Q psy3240         188 MGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCV---------ILPHIGSA--QIETRQEMARITA  256 (274)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi---------~tPH~~~~--t~~~~~~~~~~~~  256 (274)
                                        .|   |+ +||+  ||.+.+.|++..+++.         +|||.++.  +.+....+..++.
T Consensus       269 ------------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~  324 (369)
T 2eez_A          269 ------------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAE  324 (369)
T ss_dssp             -----------------------------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHh
Confidence                              11   33 7887  7777788999999999         88998885  4566778888888


Q ss_pred             HHHHHHHcCCCCCCcc
Q psy3240         257 QNIINTFHNKPMIYEV  272 (274)
Q Consensus       257 ~ni~~~~~g~~~~~~v  272 (274)
                      +++..+..++++.+.+
T Consensus       325 ~g~~~~~~~~~l~~~~  340 (369)
T 2eez_A          325 KGLDALLEDAALLKGL  340 (369)
T ss_dssp             HTTHHHHSCHHHHTTE
T ss_pred             cChhhhhcChHHhcCE
Confidence            8887777776555443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.56  E-value=8.2e-15  Score=134.41  Aligned_cols=121  Identities=14%  Similarity=0.133  Sum_probs=96.2

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ...+....++|||||+|.||..+|+.|...|.++++|+++..+.. ..+.|+... +++++++.||+|++|+|....++.
T Consensus        14 ~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           14 LVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             ----CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHH
T ss_pred             cCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHH
Confidence            444566778999999999999999999999997777765544444 456677654 899999999999999998777777


Q ss_pred             hc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 LI--NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ++  ..+.++.+++|+++||+++..+...+.+.+.+++.|+.|+|
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~  138 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE  138 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            66  24567789999999999999999999999888776666555

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=2e-14  Score=134.80  Aligned_cols=142  Identities=16%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcc----cCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQ----SDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~----aDvVil~lPlt~~T~~li~  115 (274)
                      -++|||||+|+||+++|+.|+..|.++++|+++..... +.+.|+.. .++++++++    ||+|++|+|. ..+..++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence            35799999999999999999999998777765443333 55677754 378888765    6999999995 46666663


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY  195 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  195 (274)
                       + +..++++++++|+++.+....+++.+.                            +.  ...|++.||++|.+    
T Consensus        87 -~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~----------------------------~~--~~~~v~~HPmaG~e----  130 (341)
T 3ktd_A           87 -A-VHTHAPNNGFTDVVSVKTAVYDAVKAR----------------------------NM--QHRYVGSHPMAGTA----  130 (341)
T ss_dssp             -H-HHHHCTTCCEEECCSCSHHHHHHHHHT----------------------------TC--GGGEECEEECCSCC----
T ss_pred             -H-HHccCCCCEEEEcCCCChHHHHHHHHh----------------------------CC--CCcEecCCcccccc----
Confidence             3 333589999999998776555555551                            11  25799999999997    


Q ss_pred             eehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         196 FIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       196 ~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                               ++|.-.             .+..|+...++++||+-..
T Consensus       131 ---------~sG~~a-------------a~~~Lf~g~~~iltp~~~~  155 (341)
T 3ktd_A          131 ---------NSGWSA-------------SMDGLFKRAVWVVTFDQLF  155 (341)
T ss_dssp             ----------CCGGG-------------CCSSTTTTCEEEECCGGGT
T ss_pred             ---------ccchhh-------------hhhHHhcCCeEEEEeCCCC
Confidence                     455443             3467999999999997543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.52  E-value=8.9e-15  Score=134.06  Aligned_cols=119  Identities=12%  Similarity=0.106  Sum_probs=98.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      .++..++|||||+|.||+.+|+.|...|.++++|+++..+.+ ..+.|+... ++++++++||+|++++|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            456778999999999999999999999997777755443333 444577654 899999999999999998777888875


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .+.+..+++|.++||++++.+.+.+++.+.+++.|+.|+|+
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            32355678999999999999999999999999889988885

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.51  E-value=1.4e-13  Score=123.47  Aligned_cols=148  Identities=17%  Similarity=0.143  Sum_probs=106.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc---ccCHHHHhc-ccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE---HTNIDDLCK-QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~-~aDvVil~lPlt~~T~~li~  115 (274)
                      ++|+|||+|.||+.+|+.|+..|.  ++++++++..... ..+.|+.   ..+++++++ +||+|++++|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999887  7777665433333 4455664   237888999 999999999964 5556664


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY  195 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  195 (274)
                       +..+.++++++++|++++.....+.+.+.+.+                               .|++.||+.|.+    
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-------------------------------~~v~~~p~~~~~----  124 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGK-------------------------------RFVGGHPIAGTE----  124 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-------------------------------GEECEEEECCCS----
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-------------------------------cceeeccccCCc----
Confidence             45667899999999999886666666663321                               278888888875    


Q ss_pred             eehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHH
Q psy3240         196 FIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQE  250 (274)
Q Consensus       196 ~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~  250 (274)
                               .+|             |.....+++...+++++||.+.. .+..+.
T Consensus       125 ---------~~g-------------p~~a~~~l~~g~~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A          125 ---------KSG-------------VEYSLDNLYEGKKVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             ---------CCS-------------GGGCCSSTTTTCEEEECCCSSSC-HHHHHH
T ss_pred             ---------cCC-------------hhhhhhHHhCCCCEEEecCCCCC-HHHHHH
Confidence                     233             22244678888889999997654 334433

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.51  E-value=2.4e-14  Score=131.93  Aligned_cols=118  Identities=10%  Similarity=0.200  Sum_probs=96.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ....++|||||+|.||+.+|+.|...|.++++|+++..+.+ ..+.|+... ++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            34567999999999999999999999997777655443333 444577654 8999999999999999987777777643


Q ss_pred             -HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         117 -ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       117 -~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                       +.++.++++.++||++++.+...+.+.+.+++.|+.++|+
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~  148 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDT  148 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence             5667799999999999999999999999998888888874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.50  E-value=1e-13  Score=126.26  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=96.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      .++|||||+|.||+.+|+.|...|.++++|+++..+.+ ..+.|+... +++++++ ||+|++|+|....++.++ .+.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999998888876655544 556677665 8999999 999999999877778777 6778


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      +.++++.++||++++.+...+.+.+.+++.|+.|+|.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~  129 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDA  129 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            8899999999999999999999999888888887774

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.48  E-value=1e-13  Score=130.59  Aligned_cols=115  Identities=13%  Similarity=0.298  Sum_probs=96.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhccc---CEEEEcCCCCcccHHhc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQS---DFIIITSALTPDTHHLI  114 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~a---DvVil~lPlt~~T~~li  114 (274)
                      +++++|||||+|.||+.+|+.|...|.++++|+++..+.. ..+.|+... +++|+++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            5678999999999999999999999997777765443333 445576654 899999999   9999999987 777777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                       .+.++.+++|.++||++++...+...+.+.++++|+.|+|+
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vda  139 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDV  139 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeC
Confidence             56788899999999999999999999999999999999985

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.47  E-value=1.6e-13  Score=126.07  Aligned_cols=131  Identities=11%  Similarity=0.117  Sum_probs=91.8

Q ss_pred             ccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCC--CChh-HhhcCCccc-CHHHHhccc
Q psy3240          23 CRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRS--KKPE-ADKRGAEHT-NIDDLCKQS   97 (274)
Q Consensus        23 ~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~--~~~~-a~~~g~~~~-sl~ell~~a   97 (274)
                      +.+.|.++.+...+ .....++|||||+|.||..+|+.|...|. ++++|+++.  ...+ ..+.|+... ++.|++++|
T Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~a   84 (312)
T 3qsg_A            6 HHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGEC   84 (312)
T ss_dssp             --------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHC
T ss_pred             ccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcC
Confidence            45667665443221 34456899999999999999999999998 777766542  2222 455677664 899999999


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhh--hheeehh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI--RVISISM  156 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~--~i~~~D~  156 (274)
                      |+|++++|.....+ .+ .+..+.+++++++||+++..+....++.+.+.++  |+.|+|.
T Consensus        85 DvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~  143 (312)
T 3qsg_A           85 DVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV  143 (312)
T ss_dssp             SEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            99999999766554 33 5677889999999999999999999999988887  7887774

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.46  E-value=1.5e-13  Score=124.19  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||+.+|+.|...|.++++|+++..+.+ ..+.|+... +++|++++||+|++|+|....++.++.  .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            6899999999999999999999997777765544443 455677664 899999999999999997777777762  456


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ++.+++++++||+++..+...+.+.+.+++.|+.++|
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~  118 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE  118 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            7789999999999999999999999988876666665

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.44  E-value=3.1e-13  Score=121.73  Aligned_cols=146  Identities=17%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      -++|||||+|.||+.+|+.|...  |.++++++++..... ..+.|..   ..+++++++++|+|++++|... .+.++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~   84 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK   84 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH
Confidence            36899999999999999999865  676666654433222 3345652   2378888999999999999643 355653


Q ss_pred             HHHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240         116 RARLES-MKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI  194 (274)
Q Consensus       116 ~~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  194 (274)
                       +..+. ++++++++|++++.....+.+.+.+.                            .++..|++.||++|.+   
T Consensus        85 -~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~----------------------------~~~~~~v~~~P~~g~~---  132 (290)
T 3b1f_A           85 -ILADLDLKEDVIITDAGSTKYEIVRAAEYYLK----------------------------DKPVQFVGSHPMAGSH---  132 (290)
T ss_dssp             -HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHT----------------------------TSSCEEEEEEEC-------
T ss_pred             -HHHhcCCCCCCEEEECCCCchHHHHHHHHhcc----------------------------ccCCEEEEeCCcCCCC---
Confidence             45667 89999999999887766666666332                            1245689999999876   


Q ss_pred             eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240         195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA  243 (274)
Q Consensus       195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~  243 (274)
                                .+|             |......++..++++++||.+..
T Consensus       133 ----------~~g-------------~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A          133 ----------KSG-------------AVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             -----------CC-------------TTSCCTTTTTTSEEEEEECTTCC
T ss_pred             ----------cch-------------HHHhhHHHhCCCeEEEecCCCCC
Confidence                      222             22233467777778888876543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.44  E-value=1.3e-13  Score=124.50  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=94.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||..+|+.|...|.++++|+++..+.+ ..+.|+... +++|++++||+|++++|..+.++.++.  .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            5799999999999999999999998777765544444 445577664 899999999999999998767777662  456


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.++++.++||++++.+...+.+.+.+++.|+.|+|.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~  119 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA  119 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            77899999999999999999999999888878777774

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.42  E-value=1.5e-13  Score=125.30  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=92.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--cCHHHHhcccCEEEEcCCCCcccHHhcc--
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--TNIDDLCKQSDFIIITSALTPDTHHLIN--  115 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--~sl~ell~~aDvVil~lPlt~~T~~li~--  115 (274)
                      ..++|||||+|.||..+|+.|...|.++++|+++..+.+ ..+.|...  .+++|+++.||+|++++|....++.++.  
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            347899999999999999999999997777755433333 44556654  4889999999999999998767777663  


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ++.++.+++++++||+++..+...+.+.+.+++.|+.++|
T Consensus        86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            3566789999999999999998889998888776666665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.41  E-value=1.7e-12  Score=118.44  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=82.3

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      .++|+||| +|.||+++|+.|+..|.++++++++ ..          .++.+++++||+|++++|.. .+..++. +..+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~-~~----------~~~~~~~~~aDvVilavp~~-~~~~vl~-~l~~   87 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRE-DW----------AVAESILANADVVIVSVPIN-LTLETIE-RLKP   87 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT-CG----------GGHHHHHTTCSEEEECSCGG-GHHHHHH-HHGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECC-cc----------cCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHHh
Confidence            46899999 9999999999999999977777543 21          15678889999999999965 4677764 4566


Q ss_pred             cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         121 SMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       121 ~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                      .++++++++|+++.+....+++.+.                               .+..|++.||++|.+
T Consensus        88 ~l~~~~iv~~~~svk~~~~~~~~~~-------------------------------~~~~~v~~hP~~g~~  127 (298)
T 2pv7_A           88 YLTENMLLADLTSVKREPLAKMLEV-------------------------------HTGAVLGLHPMFGAD  127 (298)
T ss_dssp             GCCTTSEEEECCSCCHHHHHHHHHH-------------------------------CSSEEEEEEECSCTT
T ss_pred             hcCCCcEEEECCCCCcHHHHHHHHh-------------------------------cCCCEEeeCCCCCCC
Confidence            7999999999998776555555541                               124689999998876

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.37  E-value=1.2e-12  Score=120.87  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=91.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCC-------Chh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSK-------KPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~-------~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .++|||||+|.||..+|+.|...| .++++|+++..       ... ..+.|+ .. ++++++++||+|++++|.....+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~~~~~  102 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGAATKA  102 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence            378999999999999999999999 87777765431       111 234566 66 88999999999999999766655


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .+  .+..+.+++++++||+++..+...+.+.+.+++.|+.++|+
T Consensus       103 ~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~  145 (317)
T 4ezb_A          103 VA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEG  145 (317)
T ss_dssp             HH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEE
T ss_pred             HH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            44  67788899999999999999999999999888888887773

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.35  E-value=7.5e-12  Score=111.88  Aligned_cols=99  Identities=17%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++++++..+.. ..+.|..   ..+++++ +++|+|++++|. ..+..++. +.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~~-~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTLE-KL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHHH-HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHHH-HH
Confidence            4799999999999999999999997666654433222 3445553   2378888 999999999994 35555653 55


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      .+.+++++++||+++.+....+.+.+
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~  103 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQ  103 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHH
Confidence            67789999999998877665555555

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.33  E-value=9e-13  Score=116.95  Aligned_cols=105  Identities=14%  Similarity=0.199  Sum_probs=65.0

Q ss_pred             CCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------------hh--HhhcCC-cc
Q psy3240          25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------------PE--ADKRGA-EH   87 (274)
Q Consensus        25 ~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------------~~--a~~~g~-~~   87 (274)
                      +.|+.|.+......++.+++|||||+|.||+.+|+.|...|.++++|+++..+              ..  ....+. ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3dtt_A            2 GSDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL   81 (245)
T ss_dssp             -----------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEE
T ss_pred             CcccccccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceec
Confidence            45666655555678999999999999999999999999999987777655433              11  112233 33


Q ss_pred             cCHHHHhcccCEEEEcCCCCcccHHhccHHH-HhcCCCCcEEEEcC
Q psy3240          88 TNIDDLCKQSDFIIITSALTPDTHHLINRAR-LESMKPGAILINTS  132 (274)
Q Consensus        88 ~sl~ell~~aDvVil~lPlt~~T~~li~~~~-l~~mk~gailINv~  132 (274)
                      .++.|++++||+|++++|..... ..+. +. .+.+ +++++||++
T Consensus        82 ~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           82 AAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             EEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECC
T ss_pred             cCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECC
Confidence            48899999999999999965443 3332 22 2334 899999999

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.32  E-value=2.9e-12  Score=120.84  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             CC-CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHh
Q psy3240          37 GP-ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        37 g~-~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~l  113 (274)
                      |. +|.||+|+|+|+|+||+.+|++|+++|++++++|....+.. ....+++..+.++++. .||+++.|     ++.++
T Consensus       169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~  243 (355)
T 1c1d_A          169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV  243 (355)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence            55 79999999999999999999999999998775554322222 4456777778889888 89999853     57789


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      |+++.++.|| ..+++|.+++.++++++ .+.|+++|+.++
T Consensus       244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv~  282 (355)
T 1c1d_A          244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILYA  282 (355)
T ss_dssp             BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEEC
T ss_pred             cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEEE
Confidence            9999999998 78999999999998777 577888777543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.32  E-value=4.4e-12  Score=124.00  Aligned_cols=114  Identities=10%  Similarity=0.197  Sum_probs=93.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---CCc---ccCHHHHhc---ccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---GAE---HTNIDDLCK---QSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---g~~---~~sl~ell~---~aDvVil~lPlt~~T~  111 (274)
                      .++|||||+|.||+.+|++|...|.++++|+++..+.+ ..+.   +..   ..+++|+++   .+|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            36799999999999999999999998777765544333 2222   222   248888876   5999999999887888


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++ .+.++.|++|.++||++++...+...+.+.++++|+.|+|+
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~  127 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS  127 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC
Confidence            887 57888999999999999999999999999999999999885

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.30  E-value=4.6e-12  Score=123.54  Aligned_cols=117  Identities=12%  Similarity=0.149  Sum_probs=93.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc----CCccc-CHHHHhcc---cCEEEEcCCCCcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR----GAEHT-NIDDLCKQ---SDFIIITSALTPD  109 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~----g~~~~-sl~ell~~---aDvVil~lPlt~~  109 (274)
                      .+..++|||||+|.||+.+|++|...|.++++|+++..+.+ ..+.    |+... +++|+++.   +|+|++++|....
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            45677899999999999999999999997777655433333 2222    55543 88898877   9999999998888


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.++. +..+.+++|.++||++.|...+.+.+.+.+++.|+.++|+
T Consensus        92 v~~vl~-~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~  137 (480)
T 2zyd_A           92 TDAAID-SLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT  137 (480)
T ss_dssp             HHHHHH-HHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC
Confidence            888884 6778899999999999999888888888888888888774

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.29  E-value=3.6e-12  Score=121.24  Aligned_cols=124  Identities=18%  Similarity=0.246  Sum_probs=95.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--------------------------CHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--------------------------NID   91 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--------------------------sl~   91 (274)
                      .+.+++|+|||+|.||..+|+.++++|+++++++++..+.+ +.+.|..+.                          +++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            47899999999999999999999999998777776665544 455555432                          467


Q ss_pred             HHhcccCEEEEcC--CCCcccHHhccHHHHhcCCCCcEEEEcC--CCchhcHHHHHhhhhhhhheeehhhccccccccee
Q psy3240          92 DLCKQSDFIIITS--ALTPDTHHLINRARLESMKPGAILINTS--RGQLVDQEALIDFIADIRVISISMVTNEKHLHRVF  167 (274)
Q Consensus        92 ell~~aDvVil~l--Plt~~T~~li~~~~l~~mk~gailINv~--RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~  167 (274)
                      ++++++|+|+.++  |. ..+..+++++.++.||||+++||+|  +|+.+.                        ++++ 
T Consensus       261 e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e------------------------~t~~-  314 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE------------------------LTEP-  314 (381)
T ss_dssp             HHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT------------------------TCCT-
T ss_pred             HHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc------------------------cccC-
Confidence            8999999999886  53 2356789999999999999999998  444322                        1122 


Q ss_pred             ecCCCcccCccceeeeeecccCCc
Q psy3240         168 TLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                         ++.+..++..+|++.++||.-
T Consensus       315 ---~~~~~~~gV~~~~v~nlP~~v  335 (381)
T 3p2y_A          315 ---GRTIVHHGVTITSPLNLPATM  335 (381)
T ss_dssp             ---TCEEEETTEEEECCSCTGGGS
T ss_pred             ---CCeEEECCEEEEeeCCCchhh
Confidence               123566889999999999874

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.29  E-value=4.2e-12  Score=114.09  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=90.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH--HH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR--AR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~--~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++++ +..+.. ..+.|+... +++++++++|+|++++|....++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999877776 544433 344466543 7899999999999999976666666642  44


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .+.+++++++|+++++...+.+.+.+.+.+.++.+++.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~  120 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDA  120 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            56789999999999998888888999888777777764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.28  E-value=4.9e-12  Score=114.00  Aligned_cols=114  Identities=21%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++++++..+.. ..+.|+... +++++++.+|+|++++|....++.++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            5899999999999999999999997666654433323 344466554 888999999999999997767777763  345


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .+.+++++++||++++...+.+.+.+.+.+.|+.++|.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~  123 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA  123 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence            57789999999999999888888999888878887774

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.26  E-value=6.8e-12  Score=113.19  Aligned_cols=113  Identities=16%  Similarity=0.249  Sum_probs=89.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++++++..+.. ..+.|+... +++++++++|+|++++|....++.++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            6899999999999999999999997666654333222 333466544 788999999999999998777777774  355


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .+.+++++++|++++|...+.+.+.+.+.+.++.+++
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~  121 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD  121 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            6778999999999999877888888888877777776

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.1e-11  Score=121.42  Aligned_cols=114  Identities=11%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----cCCccc-CHHHHhcc---cCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----RGAEHT-NIDDLCKQ---SDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----~g~~~~-sl~ell~~---aDvVil~lPlt~~T~  111 (274)
                      ..+|||||+|.||+.+|+.|...|.++++|+++..+.+ ..+     .|+... +++++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            45799999999999999999999997777765544333 333     355443 88898876   999999999877888


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++ .+..+.+++|.++||++.+...+.+.+.+.+++.|+.++|+
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~  133 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGS  133 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCC
Confidence            888 46778899999999999999888888989888888888875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.26  E-value=8.9e-13  Score=122.77  Aligned_cols=94  Identities=18%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ..|.+++|+|||+|.||+++|+.|+..|+++++++++... .. +.+.|+...++++++++||+|++++|... ...++.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            3578899999999999999999999999977777665443 22 45567765588899999999999999654 366665


Q ss_pred             HHHHhcCCCCcEEEEcC
Q psy3240         116 RARLESMKPGAILINTS  132 (274)
Q Consensus       116 ~~~l~~mk~gailINv~  132 (274)
                      ++..+.+++++++++++
T Consensus        91 ~~i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH  107 (338)
T ss_dssp             HHTGGGCCTTCEEEESC
T ss_pred             HHHHhhCCCCCEEEEcC
Confidence            46667899999999885

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.25  E-value=8.7e-12  Score=111.50  Aligned_cols=112  Identities=12%  Similarity=0.199  Sum_probs=87.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      ++|+|||+|.||+.+|+.|.. |.++++++++..+.. ..+.|+...+++++++.+|+|++++|....++.++ ++..+.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY   79 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence            479999999999999999999 997766655433332 33335544347788889999999999766677666 456677


Q ss_pred             CCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         122 MKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       122 mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      +++++++|+++++...+.+.+.+.+++.++.++++
T Consensus        80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~  114 (289)
T 2cvz_A           80 LREGTYWVDATSGEPEASRRLAERLREKGVTYLDA  114 (289)
T ss_dssp             CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            89999999999998888888998888777777764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.25  E-value=9.7e-12  Score=111.91  Aligned_cols=113  Identities=17%  Similarity=0.264  Sum_probs=86.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH--HH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR--AR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~--~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++|+++..+.. ..+.|+... +++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            4799999999999999999999997776655433333 344566554 8899999999999999987777776643  24


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ++.+++++++|++++..+.+.+.+.+.+.+.++.++|
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~  117 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMD  117 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            5678999999998888877777777777666666665

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.25  E-value=2.6e-12  Score=122.46  Aligned_cols=139  Identities=19%  Similarity=0.318  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh--h-HhhcCCcc---cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP--E-ADKRGAEH---TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~--~-a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++.|++|+|||+|.||+.+++.|+.+|++.+.+.+++...  . +...|+..   .++.++++.+|+|+.|+|.+   ..
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~---~~  240 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP  240 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC---Cc
Confidence            5899999999999999999999999999444444444322  2 44556543   36778889999999998754   34


Q ss_pred             hccHHHHhc--CC----CCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeec
Q psy3240         113 LINRARLES--MK----PGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHM  186 (274)
Q Consensus       113 li~~~~l~~--mk----~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (274)
                      +++++.++.  ||    ++.++||+                                                       
T Consensus       241 ~~~~~~l~~~~lk~r~~~~~v~vdi-------------------------------------------------------  265 (404)
T 1gpj_A          241 VIHVDDVREALRKRDRRSPILIIDI-------------------------------------------------------  265 (404)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEEC-------------------------------------------------------
T ss_pred             eecHHHHHHHHHhccCCCCEEEEEc-------------------------------------------------------
Confidence            455555554  22    33344443                                                       


Q ss_pred             ccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEE--ccCCCCCcHHHHH----------HHHHH
Q psy3240         187 IMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVI--LPHIGSAQIETRQ----------EMARI  254 (274)
Q Consensus       187 i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~--tPH~~~~t~~~~~----------~~~~~  254 (274)
                                                    .+  |.+.+++++.+|||.+  +||+++.+.++.+          .+...
T Consensus       266 ------------------------------a~--P~~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q  313 (404)
T 1gpj_A          266 ------------------------------AN--PRDVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEE  313 (404)
T ss_dssp             ------------------------------CS--SCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ------------------------------cC--CCCCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                          22  4445678999999999  9999998887654          56666


Q ss_pred             HHHHHHHHHcCCC
Q psy3240         255 TAQNIINTFHNKP  267 (274)
Q Consensus       255 ~~~ni~~~~~g~~  267 (274)
                      .++++..|+.+++
T Consensus       314 ~~~~f~~w~~~~~  326 (404)
T 1gpj_A          314 ELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            7778888876543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.25  E-value=1.3e-11  Score=117.74  Aligned_cols=100  Identities=22%  Similarity=0.337  Sum_probs=80.3

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----------------------------C
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----------------------------N   89 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----------------------------s   89 (274)
                      ++.|++|+|+|+|.||..+++.++++|+++++++.+..+.. +...|....                            +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            58899999999999999999999999997666665554433 455565533                            2


Q ss_pred             HHHHhcccCEEEEc--CCCCcccHHhccHHHHhcCCCCcEEEEcC--CCchhcH
Q psy3240          90 IDDLCKQSDFIIIT--SALTPDTHHLINRARLESMKPGAILINTS--RGQLVDQ  139 (274)
Q Consensus        90 l~ell~~aDvVil~--lPlt~~T~~li~~~~l~~mk~gailINv~--RG~iVde  139 (274)
                      ++++++.+|+|+.+  +|. ..+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       249 l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            67788899999999  553 2356788999999999999999999  8887765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=111.27  Aligned_cols=114  Identities=14%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH--HH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR--AR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~--~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.++++++++..+.. ..+.|+... +++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999997777765544333 344566544 7889999999999999976667666643  23


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.+++++++||++++.....+.+.+.+...++.++++
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~  148 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEA  148 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            56789999999999988777888888777666666663

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.21  E-value=7.9e-11  Score=106.47  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-----------C--------------Ccc-cCHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-----------G--------------AEH-TNIDDLCK   95 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-----------g--------------~~~-~sl~ell~   95 (274)
                      ++|+|||+|.||+.+|+.+...|+++++|+.+....+ ..+.           +              +.. .+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            7999999999999999999999998777765443322 2111           1              222 37888999


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +||+|+.++|.+.+.+..+-++..+.+++++++++.+++-  ...++.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~  131 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVG  131 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHH
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHh
Confidence            9999999999877677766677888899999999655443  3455555

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.18  E-value=3.7e-11  Score=115.06  Aligned_cols=124  Identities=19%  Similarity=0.281  Sum_probs=94.3

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc------------------------------
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH------------------------------   87 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~------------------------------   87 (274)
                      .+.+.+|+|+|+|.||..+|+.++++|++++++|.+..+.+ +.+.|..+                              
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            47899999999999999999999999998777777665444 44455532                              


Q ss_pred             cCHHHHhcccCEEEEcC--CCCcccHHhccHHHHhcCCCCcEEEEcC--CCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          88 TNIDDLCKQSDFIIITS--ALTPDTHHLINRARLESMKPGAILINTS--RGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        88 ~sl~ell~~aDvVil~l--Plt~~T~~li~~~~l~~mk~gailINv~--RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                      .++++++++||+|+.++  |.. ....+++++.++.||||+++||+|  +|+.++..                       
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t-----------------------  322 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA-----------------------  322 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC-----------------------
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc-----------------------
Confidence            14678899999999885  532 456788999999999999999998  55543321                       


Q ss_pred             cceeecCCCcccCccceeeeeecccCCc
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                       ++   ++.| ..++..+|++.++||.-
T Consensus       323 -~~---~~~~-~~~GV~~~gv~nlP~~v  345 (405)
T 4dio_A          323 -EA---GKVT-EVGGVRIVGHLNVAGRI  345 (405)
T ss_dssp             -CT---TEEE-EETTEEEEECSSGGGGG
T ss_pred             -CC---CCeE-EECCEEEEEeCCCCccC
Confidence             11   1123 34788999999999973

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.17  E-value=7.6e-11  Score=111.47  Aligned_cols=99  Identities=20%  Similarity=0.308  Sum_probs=78.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---C------------------------
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---N------------------------   89 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---s------------------------   89 (274)
                      .++.|++|+|+|+|.||+.+++.++++|+++++++.+..+.+ +...|....   .                        
T Consensus       168 ~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          168 GTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            378999999999999999999999999997666665555444 445665432   1                        


Q ss_pred             ---HHHHhcccCEEEEcC--CCCcccHHhccHHHHhcCCCCcEEEEcC--CCchh
Q psy3240          90 ---IDDLCKQSDFIIITS--ALTPDTHHLINRARLESMKPGAILINTS--RGQLV  137 (274)
Q Consensus        90 ---l~ell~~aDvVil~l--Plt~~T~~li~~~~l~~mk~gailINv~--RG~iV  137 (274)
                         ++++++.+|+|+.++  |..+ +.++++++.++.||+|+++||++  ||+.+
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence               677889999999888  4432 45678899999999999999999  77654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.17  E-value=1.4e-11  Score=120.48  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             hccCCCCccCCCCCCCCCCCC-CEEEEEccChHHHHHHHHHccC------CCeEEEEeCCCCChh--HhhcCCcc-----
Q psy3240          22 SCRGEWKSWAPNFMCGPALQN-STVGIVGCGRIGLSVLEKLIPY------KVSKFLYTSRSKKPE--ADKRGAEH-----   87 (274)
Q Consensus        22 ~~~~~w~~~~~~~~~g~~L~g-ktVGIIGlG~IG~~iA~~L~~~------G~~vv~~~~r~~~~~--a~~~g~~~-----   87 (274)
                      -.+|.|...    ...+.|+| ++|||||+|+||.++|+.|+..      |+++++++++..+..  +.+.|+..     
T Consensus        37 ~~~~~w~~~----~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta  112 (525)
T 3fr7_A           37 VRGGRNLFP----LLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTL  112 (525)
T ss_dssp             EECCGGGGG----GHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCE
T ss_pred             Eeccccccc----cChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCC
Confidence            345666531    12367999 9999999999999999999987      997776766544332  56678764     


Q ss_pred             cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          88 TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        88 ~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .++.|++++||+|++++|..... .++. +.++.||+|++| -.+.|-.
T Consensus       113 ~s~aEAa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaIL-s~AaGf~  158 (525)
T 3fr7_A          113 GDIWETVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSIL-GLSHGFL  158 (525)
T ss_dssp             EEHHHHHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCEE-EESSSHH
T ss_pred             CCHHHHHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCeE-EEeCCCC
Confidence            48999999999999999986553 4665 688999999995 5556643

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.16  E-value=4.4e-11  Score=116.22  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc----CCcc-cCHHHHhcc---cCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR----GAEH-TNIDDLCKQ---SDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~----g~~~-~sl~ell~~---aDvVil~lPlt~~T~~l  113 (274)
                      ++|||||+|.||+.+|+.|...|.++.+|+++..+.+ ..+.    ++.. .+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5799999999999999999999997766654433322 2222    5544 388898876   99999999987778877


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      + .+..+.+++|.++|+++.+...+.+.+.+.+++.|+.++++
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~  127 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGT  127 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECC
Confidence            7 46677899999999999998888888888887777777764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.16  E-value=8.2e-11  Score=114.49  Aligned_cols=113  Identities=10%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----cCCcc-cCHHHHhc---ccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----RGAEH-TNIDDLCK---QSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----~g~~~-~sl~ell~---~aDvVil~lPlt~~T~~  112 (274)
                      ++|||||+|.||+.+|+.|...|.++.+|+++..+.. ..+     .++.. .+++++++   .+|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            4799999999999999999999997776665443333 333     45544 37888874   89999999998777888


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++. +..+.+++|.++|+++.|...+...+.+.+++.|+.++++
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~  125 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS  125 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCC
Confidence            774 5677899999999999998888888888888777777764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.14  E-value=6.8e-11  Score=104.78  Aligned_cols=101  Identities=13%  Similarity=0.133  Sum_probs=77.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ++|+|||+|.||+.+|+.|...|.+++++ ++.....    ..+.|+. .++++++++||+|++++|.....+.+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~-~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTS-LEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEC-CTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEe-CCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999999976664 4421211    2334666 67888999999999999976655554  456


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADI  149 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~  149 (274)
                      .+.+++  ++||++++.+.+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677776  99999988887788888866543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.10  E-value=1.3e-10  Score=113.12  Aligned_cols=113  Identities=16%  Similarity=0.229  Sum_probs=88.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcC-------Ccc-cCHHHHhcc---cCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRG-------AEH-TNIDDLCKQ---SDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g-------~~~-~sl~ell~~---aDvVil~lPlt~~  109 (274)
                      ++|||||+|.||+.+|+.|...|.++.+|+++..+.+ . ...|       +.. .+++++++.   +|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            4799999999999999999999997766654433322 2 2224       333 378888874   9999999998777


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++.++ ++..+.+++|.++|+++.|...+.+.+.+.+++.|+.++++
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~  127 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM  127 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEe
Confidence            78777 45667789999999999998888888888888878887764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.10  E-value=6.4e-11  Score=108.84  Aligned_cols=93  Identities=23%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-------CCccc-CHHHHhcccCEEEEcCCCCccc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-------GAEHT-NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-------g~~~~-sl~ell~~aDvVil~lPlt~~T  110 (274)
                      -+.|+|||||+|.||..+|+.+. .|.++++|+.+....+ +.+.       ++... ++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            46799999999999999999999 9998777766544333 3332       34333 6766 89999999999998887


Q ss_pred             HHhccHHHHhcCCCCcEE-EEcCCCch
Q psy3240         111 HHLINRARLESMKPGAIL-INTSRGQL  136 (274)
Q Consensus       111 ~~li~~~~l~~mk~gail-INv~RG~i  136 (274)
                      +..+-.+ ++.+ +++++ .|+|+.++
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~  112 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV  112 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH
Confidence            7766444 5667 99998 48888554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.09  E-value=1.9e-10  Score=102.84  Aligned_cols=112  Identities=9%  Similarity=0.140  Sum_probs=81.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCc--ccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTP--DTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~--~T~~  112 (274)
                      |.+++| +++|||+|.||+++|+.|...|+++.+++++..+..  +...+....+++++ +++|+|++++|...  .+..
T Consensus       112 ~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          112 GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            457899 999999999999999999999985555544332222  23345444478888 99999999999862  2323


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .+.   .+.+++|++++|++.+. .+. .+.+.++++|+.++|
T Consensus       190 ~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~~~v~  227 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGLKVQT  227 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred             CCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcCEEEC
Confidence            343   46689999999999874 343 477777777777665

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.05  E-value=2.8e-10  Score=111.19  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=78.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..|.||+++|+|+|.||+.+|++|+++|+++++++.+..+.. +...++...+++++++.+|+|+.+.    .+.++++
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~  335 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIM  335 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBC
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhh
Confidence            4679999999999999999999999999997666654433222 4556776678999999999999754    4567888


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.++.||++++++|+|++.
T Consensus       336 ~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          336 LDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             HHHHTTSCTTEEEEESSSTT
T ss_pred             HHHHHhcCCCeEEEEcCCCC
Confidence            88999999999999999973

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.05  E-value=2e-10  Score=103.53  Aligned_cols=91  Identities=15%  Similarity=0.251  Sum_probs=70.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      ++|+|||+ |.||+.+|+.|...|.++++++++..... ..+.|+...++.+++++||+|++++|... ++.++ ++..+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~   89 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVP   89 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHH
Confidence            68999999 99999999999999997666654433222 33456555577888999999999999644 56666 45667


Q ss_pred             cCCCCcEEEEcCCCc
Q psy3240         121 SMKPGAILINTSRGQ  135 (274)
Q Consensus       121 ~mk~gailINv~RG~  135 (274)
                      .+++++++|+++.|.
T Consensus        90 ~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           90 RVRPGTIVLILDAAA  104 (286)
T ss_dssp             GSCTTCEEEESCSHH
T ss_pred             hCCCCCEEEECCCCc
Confidence            789999999988876

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.04  E-value=2.7e-10  Score=107.65  Aligned_cols=113  Identities=13%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHhcc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~li~  115 (274)
                      +|.||+|+|+|+|+||+.+|++|..+|++++++|....+..  +.+.+++..+.++++. +||+++.|.     +.++++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~  244 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN  244 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence            79999999999999999999999999998775543322222  3344777777788776 899999874     455788


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      .+.++.|+ ..++++.+++.+.+++ ..+.|+++|+.++ |...
T Consensus       245 ~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~~~Pd~~~  286 (364)
T 1leh_A          245 DFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIVYAPDYVI  286 (364)
T ss_dssp             TTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCEECCHHHH
T ss_pred             HHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCEEecceee
Confidence            77788884 5789999999887755 5567888887554 4444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.02  E-value=2.8e-10  Score=102.76  Aligned_cols=111  Identities=15%  Similarity=0.270  Sum_probs=79.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCcc--c
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPD--T  110 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~--T  110 (274)
                      |.++.|++++|||.|.||+++|+.|...|++++++ +|+... .  +...++... +++++++++|+|++++|....  +
T Consensus       124 ~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~-~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~  202 (275)
T 2hk9_A          124 IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLW-NRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDED  202 (275)
T ss_dssp             CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEE-CSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTC
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEE-ECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCC
Confidence            45788999999999999999999999999954444 444322 2  223344444 788889999999999997642  2


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ...++   ++.++++++++|++.    ....+.+..++.|+.++|
T Consensus       203 ~~~i~---~~~l~~g~~viDv~~----~~t~ll~~a~~~g~~~v~  240 (275)
T 2hk9_A          203 PEIFN---YDLIKKDHVVVDIIY----KETKLLKKAKEKGAKLLD  240 (275)
T ss_dssp             CCSSC---GGGCCTTSEEEESSS----SCCHHHHHHHHTTCEEEC
T ss_pred             CCCCC---HHHcCCCCEEEEcCC----ChHHHHHHHHHCcCEEEC
Confidence            22343   456899999999998    234456656666766665

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.55  E-value=4.1e-11  Score=103.90  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      +.+++|+|||+|+||+.+|+.|...|.++++++++.........++...+++++++++|+|++++|.. .++.++  + +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~--~-l   92 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA--E-L   92 (201)
Confidence            77889999999999999999999999876666554331112334555457888999999999999974 566666  2 4


Q ss_pred             hcCCCCcEEEEcCCCchh
Q psy3240         120 ESMKPGAILINTSRGQLV  137 (274)
Q Consensus       120 ~~mk~gailINv~RG~iV  137 (274)
                      ..+++++++||+++|-..
T Consensus        93 ~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           93 ADSLKGRVLIDVSNNQKM  110 (201)
Confidence            456789999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.97  E-value=4.5e-10  Score=99.73  Aligned_cols=100  Identities=14%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .+.+.+++|+|||+|.||+.+|+.|...|.+ +.+++++..+..  ....++... +++++++++|+|++++|.. ..+.
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence            3556678999999999999999999988987 445544322222  223366543 7889999999999999965 4455


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      ++ ++..+.+++++++|++++|...+
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchH
Confidence            55 35566788999999999987654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.94  E-value=2.4e-09  Score=104.07  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh---------hHhhcCC-------------cc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP---------EADKRGA-------------EH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~---------~a~~~g~-------------~~-~sl~ell~~aDv   99 (274)
                      ++|+|||+|.||..+|..+...|.++++++.+..+.         ...+.|.             .. .+++ .+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            799999999999999999999999888877654411         0112232             12 2564 6899999


Q ss_pred             EEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240         100 IIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus       100 Vil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      |+.++|...+.+..+-++..+.++++++|+ |+|.   +....+.+
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs---l~i~~ia~  176 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS---LDLNEISS  176 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHHT
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC---hhHHHHHH
Confidence            999999877766655567778899999996 5554   33355555

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.93  E-value=2.1e-09  Score=95.87  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=73.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      .-++|+|||+|+||.++|+.|+..|.++++|+++                ++ ++.||  ++++|.. ....++ .+..+
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~   63 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSA   63 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHT
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHH
Confidence            3468999999999999999999999976666542                12 56799  8888975 666666 45667


Q ss_pred             cCCCCcEEEEcC-CCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240         121 SMKPGAILINTS-RGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY  195 (274)
Q Consensus       121 ~mk~gailINv~-RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  195 (274)
                      .+++|+++++++ +-+.-..+.+.+                                ++..|+..||+.|..-+++
T Consensus        64 ~l~~g~ivvd~sgs~~~~vl~~~~~--------------------------------~g~~fvg~HPm~g~~~~i~  107 (232)
T 3dfu_A           64 FARRGQMFLHTSLTHGITVMDPLET--------------------------------SGGIVMSAHPIGQDRWVAS  107 (232)
T ss_dssp             TCCTTCEEEECCSSCCGGGGHHHHH--------------------------------TTCEEEEEEEEETTEEEEE
T ss_pred             hcCCCCEEEEECCcCHHHHHHHHHh--------------------------------CCCcEEEeeeCCCCceeee
Confidence            789999999974 322222222222                                3467999999998764444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.91  E-value=2.8e-09  Score=103.18  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=76.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChhHhh--------------------cCCcc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADK--------------------RGAEH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~a~~--------------------~g~~~-~sl~ell~~aDv   99 (274)
                      ++|+|||+|.||..+|..|...  |.++++++.+..+.+...                    .++.. .++++.++.||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999877  787777765433222110                    12333 377888999999


Q ss_pred             EEEcCCCCcccHH-----------hc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         100 IIITSALTPDTHH-----------LI--NRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       100 Vil~lPlt~~T~~-----------li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      |++|+|......+           +.  -++..+.+++++++||.|+..+-..+.+.+.+++
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~  147 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA  147 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH
Confidence            9999986443322           22  2345667899999999999888777777776654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=100.55  Aligned_cols=110  Identities=20%  Similarity=0.235  Sum_probs=80.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--HhhcC--Ccc-cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--ADKRG--AEH-TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~~~g--~~~-~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ...++|||||+|.||+.+++.|.. +|.+.+.++++.... +  ....+  +.. .+++++++++|+|++++|..   ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence            457899999999999999999875 477444444444332 2  23334  444 38999999999999999953   45


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      ++..   +.+++|++++++++...- ...+.+.+.++++.++|.
T Consensus       210 v~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~~~vD~  249 (312)
T 2i99_A          210 ILFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAVLYVDS  249 (312)
T ss_dssp             CBCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSEEEESC
T ss_pred             ccCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCEEEECC
Confidence            5554   568999999999887663 355666667778888883

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.86  E-value=2.2e-09  Score=93.29  Aligned_cols=94  Identities=18%  Similarity=0.246  Sum_probs=69.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      .+++|+|||+|.||+.+|+.|...|.++++++++..+.. ..+.++...+++++++++|+|++++|. ...+.++.   +
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l  102 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L  102 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence            457899999999999999999999997777765433222 223355555888999999999999995 45566663   3


Q ss_pred             hcCCCCcEEEEcCCCchhc
Q psy3240         120 ESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVd  138 (274)
                      +.+.+++++|++++|...+
T Consensus       103 ~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          103 SDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             HHHHTTCEEEECCCCCHHH
T ss_pred             HHhcCCCEEEEeCCCcccc
Confidence            3333799999999987654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.84  E-value=7.7e-09  Score=91.24  Aligned_cols=87  Identities=14%  Similarity=0.233  Sum_probs=62.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .++|+|||+|.||+.+|+.|...|    .++++|+++..+     .|+... ++.++++++|+|++++| ....+.++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~-   76 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN-   76 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence            468999999999999999998878    566666654433     466554 78899999999999999 456666653 


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q psy3240         117 ARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~  135 (274)
                      +..+.++++.++.+++.-+
T Consensus        77 ~l~~~l~~~~vv~~~~gi~   95 (262)
T 2rcy_A           77 NIKPYLSSKLLISICGGLN   95 (262)
T ss_dssp             HSGGGCTTCEEEECCSSCC
T ss_pred             HHHHhcCCCEEEEECCCCC
Confidence            3445565444555555433

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.83  E-value=8.2e-09  Score=99.59  Aligned_cols=114  Identities=19%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc-------------------CCcc-cCHHHHhc
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-------------------GAEH-TNIDDLCK   95 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~-------------------g~~~-~sl~ell~   95 (274)
                      ++++..-++|+|||+|.||..+|..|.. |.++++|+....+.+....                   ++.. .+++++++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4577777899999999999999999988 9987777655433221111                   2333 37889999


Q ss_pred             ccCEEEEcCCCCcc-------cHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240          96 QSDFIIITSALTPD-------THHLI--NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus        96 ~aDvVil~lPlt~~-------T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      .||+|++++|....       +..+.  -+...+ +++|+++|+.|+..+-..+.+.+.+.+.++
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999997521       22232  134566 899999999999888788888887665443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.82  E-value=8.4e-09  Score=94.84  Aligned_cols=104  Identities=12%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCC--Chh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSK--KPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~--~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      +..++|+|||+|+||..+|+.|...|    .++++++++..  +.+ ..+.|+... +..++++.||+|++++| ....+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            34568999999999999999999888    56666655443  222 345577654 78899999999999999 55666


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      .++. +..+.+++++++|+++.|-.  .+.+.+.+.
T Consensus        99 ~vl~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~  131 (322)
T 2izz_A           99 FILD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLS  131 (322)
T ss_dssp             HHHH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHH
T ss_pred             HHHH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHh
Confidence            6663 45567889999999976643  334555443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.82  E-value=5.7e-09  Score=84.62  Aligned_cols=91  Identities=19%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      +++|+|||.|.||+.+++.|+..|+++++++++..+..  +...+..   ..+++++++++|+|+.++|...   .++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~---~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT---PIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS---CSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC---cEeeH
Confidence            89999999999999999999999998555554433322  3344543   2378899999999999999753   33443


Q ss_pred             HHHhcCCCCcEEEEcCCCchhc
Q psy3240         117 ARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVd  138 (274)
                         +.+++|.+++|++...-++
T Consensus        98 ---~~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             ---GGCCTTCEEEECCSSCSBC
T ss_pred             ---HHcCCCCEEEEccCCccCC
Confidence               4578999999998754333

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.81  E-value=6.1e-09  Score=91.91  Aligned_cols=98  Identities=20%  Similarity=0.396  Sum_probs=70.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh-H-hhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE-A-DKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~-a-~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ++|+|||+|+||+.+|+.|...|.    ++++|+++..+.+ . ...|+... ++.+++++||+|++++|. ...+.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            689999999999999999999997    7777765544333 2 34577654 889999999999999974 4455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++..+.+++++++|.+..|--  .+.+.+
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi~--~~~l~~  107 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGKS--IESTEN  107 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCSC--HHHHHH
T ss_pred             HHHHhhcCCCCEEEEecCCCC--HHHHHH
Confidence            455566889999996655433  344444

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.80  E-value=7.6e-09  Score=93.89  Aligned_cols=100  Identities=9%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----------hcC------------------Ccc-cCHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----------KRG------------------AEH-TNID   91 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----------~~g------------------~~~-~sl~   91 (274)
                      ++|+|||+|.||..+|..|...|.++++++.+....+ ..           +.|                  +.. .+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999997777765433221 10           122                  122 3778


Q ss_pred             HHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          92 DLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        92 ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +.++.||+|++++|...+.+.-+-++..+.++++++++..+.+-  ....+.+
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~  146 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIAN  146 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHT
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHH
Confidence            88999999999999765544434345556788999998544443  2344554

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.79  E-value=6.7e-09  Score=89.95  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .++.+++|+|||+|.||+.+|+.|...|.++++++++ ..               .+++||+|++++| .+.++.++. +
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~-~~---------------~~~~aD~vi~av~-~~~~~~v~~-~   76 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK-DQ---------------ATTLGEIVIMAVP-YPALAALAK-Q   76 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT-CC---------------CSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC-HH---------------HhccCCEEEEcCC-cHHHHHHHH-H
Confidence            4688999999999999999999999999976666543 21               4678999999999 666776664 3


Q ss_pred             HHhcCCCCcEEEEcCCCch
Q psy3240         118 RLESMKPGAILINTSRGQL  136 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~i  136 (274)
                      ..+.++ ++++|++++|-.
T Consensus        77 l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           77 YATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             THHHHT-TSEEEECCCCBC
T ss_pred             HHHhcC-CCEEEEECCCCC
Confidence            344567 999999999764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.74  E-value=8.1e-09  Score=96.75  Aligned_cols=129  Identities=12%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCCCc-
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSALTP-  108 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPlt~-  108 (274)
                      .+++++|+|+|.|.+|+.+++.++.+|+++++++++..+.+ ..+.+...        .++.+.++.+|+|+.+++... 
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            47889999999999999999999999997677766544333 32222211        245667788999999997533 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC--CchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeec
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR--GQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHM  186 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R--G~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (274)
                      .+..++.++.++.|+++.+++|++.  |+.+      +                  +++.++++.+.+..+...++++.+
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~------e------------------~~~~~~~~~~~~~~~~v~~~~~~~  299 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAVDQGGCV------E------------------TLHPTSHTQPTYEVFGVVHYGVPN  299 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTTCCSB------T------------------TCCCCCSSSCEEEETTEEEECCSC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEecCCCCCC------c------------------cccCCCCCCCEEEECCEEEEEeCC
Confidence            2334567788999999999999984  3322      1                  234566777777777777888888


Q ss_pred             ccCCc
Q psy3240         187 IMGDT  191 (274)
Q Consensus       187 i~~~~  191 (274)
                      +++.-
T Consensus       300 lp~~~  304 (361)
T 1pjc_A          300 MPGAV  304 (361)
T ss_dssp             GGGGC
T ss_pred             cchhh
Confidence            88764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.74  E-value=6.4e-08  Score=93.61  Aligned_cols=108  Identities=14%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC---------------------Ccc-cCHHHHhcccCE
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG---------------------AEH-TNIDDLCKQSDF   99 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g---------------------~~~-~sl~ell~~aDv   99 (274)
                      .-+++|||+|.||..+|..|...|.++++|+.+..+.+....+                     +.. .++.++++.||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            3589999999999999999999999888887766554421112                     223 378899999999


Q ss_pred             EEEcCCCCcc----------cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         100 IIITSALTPD----------THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       100 Vil~lPlt~~----------T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      |++|+|....          .+..+ .+..+.+++|+++|+.|+..+-..+.+.+.+.+.+
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~  147 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVA  147 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHS
T ss_pred             EEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhC
Confidence            9999985432          33343 46778899999999999877666777777666643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.73  E-value=1.9e-08  Score=88.90  Aligned_cols=94  Identities=16%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|+|||+|.||+.+|+.|...|..+.+++++..+.. . ...|+... +++++++++|+|++++| .....     +.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH
Confidence            5899999999999999999998986555554333222 2 23466654 78999999999999999 44443     344


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ..+++|.++|++..|-..  +.+.+
T Consensus        78 ~~l~~~~~vv~~~~~~~~--~~l~~  100 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGISL--QRLAT  100 (259)
T ss_dssp             TTSCCCSCEEECCTTCCH--HHHHH
T ss_pred             HHhccCCEEEEeCCCCCH--HHHHH
Confidence            556789999999765433  34444

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.73  E-value=2.2e-08  Score=95.89  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=76.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------------------cC-Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------------------RG-AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------------------~g-~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||+|.||..+|..|...|.++++++.+..+.. ..+                   .+ +.. .+++++++.||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            4799999999999999999999997777765433222 111                   22 222 3788889999999


Q ss_pred             EEcCCCCcc---------cHHhccHHHHhcCCC---CcEEEEcCCCchhc-HHHHHhhhhhh
Q psy3240         101 IITSALTPD---------THHLINRARLESMKP---GAILINTSRGQLVD-QEALIDFIADI  149 (274)
Q Consensus       101 il~lPlt~~---------T~~li~~~~l~~mk~---gailINv~RG~iVd-e~aL~~~L~~~  149 (274)
                      ++|+|....         .+..+ ++..+.+++   ++++|+.|+..+-. .+.+.+.+++.
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~  141 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDC  141 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHh
Confidence            999996544         44444 345556788   99999998877655 66677766653

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.73  E-value=6.5e-09  Score=99.17  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCC---eEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKV---SKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~---~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ...+|.|||. |..|+..++.++++|+   .+.++|.+...     .|..   + +.++++|+|+.++........++++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~-----~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~  283 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS-----RGGP---F-DEIPQADIFINCIYLSKPIAPFTNM  283 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT-----TCSC---C-THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc-----cCCc---h-hhHhhCCEEEECcCcCCCCCcccCH
Confidence            4678999999 9999999999999998   77777654311     1222   2 3456899999999987777789999


Q ss_pred             HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCcc-----ceeeeeecccCC
Q psy3240         117 ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHV-----SAFIFIHMIMGD  190 (274)
Q Consensus       117 ~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~  190 (274)
                      +.++.| |||+++||++-    |.---.+        .+      .-+.+.+|+++|+|..++     ..+|++.++||.
T Consensus       284 e~v~~m~k~gsVIVDVA~----D~GG~~e--------t~------~f~~~~Tt~~~P~~~~~g~~~~~V~~~~v~nlP~~  345 (394)
T 2qrj_A          284 EKLNNPNRRLRTVVDVSA----DTTNPHN--------PI------PIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSL  345 (394)
T ss_dssp             HHHCCTTCCCCEEEETTC----CTTCTTC--------SS------CSCCCCCBTTBCCEEECCSSSSCEEEECCTTGGGG
T ss_pred             HHHhcCcCCCeEEEEEec----CCCCCcC--------cc------cccccCCccCCCEEEECCCCCCCEEEEEeCChhhh
Confidence            999999 99999999972    2111111        00      012379999999999998     999999999997


Q ss_pred             c
Q psy3240         191 T  191 (274)
Q Consensus       191 ~  191 (274)
                      -
T Consensus       346 l  346 (394)
T 2qrj_A          346 L  346 (394)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.71  E-value=1.1e-08  Score=99.88  Aligned_cols=99  Identities=22%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----------cCC-------------cc-cCHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----------RGA-------------EH-TNIDDLCK   95 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----------~g~-------------~~-~sl~ell~   95 (274)
                      -++|||||+|.||..+|+.+...|.++++++.+....+ +.+           .|.             .. .+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            46899999999999999999999998888775543322 111           221             12 2554 688


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHh
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVDQEALID  144 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVde~aL~~  144 (274)
                      +||+|+.++|...+.+.-+-++..+.++++++| .|+|.-.+   ..+.+
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~  130 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAA  130 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHH
Confidence            999999999987666554545677788999999 57876543   44544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.69  E-value=5.5e-08  Score=94.01  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------------------cC-Ccc-cCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------------------RG-AEH-TNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------------------~g-~~~-~sl~ell~~aDvV  100 (274)
                      ++|+|||+|.||..+|..|...|.++++++.+..+.+ ..+                   .+ +.. .+++++++.||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            6899999999999999999999998777765543322 111                   11 222 3788899999999


Q ss_pred             EEcCCCCc---------ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240         101 IITSALTP---------DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       101 il~lPlt~---------~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~  150 (274)
                      ++|+|...         ..+.++ ++..+.+++++++|+.|+..+-..+.+.+.+++.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~  140 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEEL  140 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhc
Confidence            99999653         334443 45667799999999999866656667777666543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.68  E-value=1.1e-08  Score=90.30  Aligned_cols=104  Identities=17%  Similarity=0.327  Sum_probs=69.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-H-hhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-A-DKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a-~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ++|+|||+|.||+.+|+.|...| .++.+++++..+.. . ...|+... ++++++ .+|+|++++| ....+.++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            47999999999999999999888 86666654433322 2 23476654 677788 9999999999 55555444    


Q ss_pred             HhcCC-CCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMK-PGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk-~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                       ..++ +++++|+++.|-..  +.+.+.+.. +..++++
T Consensus        75 -~~l~~~~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~  109 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLSV--GTLSRYLGG-TRRIVRV  109 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCCH--HHHHHHTTS-CCCEEEE
T ss_pred             -HHhccCCCEEEEecCCCCH--HHHHHHcCC-CCcEEEE
Confidence             3332 28999999655433  556665443 3344444

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.67  E-value=4.4e-08  Score=88.58  Aligned_cols=101  Identities=12%  Similarity=0.180  Sum_probs=73.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC---eEEEEeCCCCChh-Hh-hcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRSKKPE-AD-KRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~~~~~-a~-~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      .++|||||+|+||+.+|+.|...|.   ++++++++..+.. .. ..|+... +..+++++||+|++++|. ...+.++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~   81 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE   81 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH
Confidence            4789999999999999999998887   6777765544333 22 3477654 889999999999999984 44555553


Q ss_pred             HHHHhc-CCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         116 RARLES-MKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       116 ~~~l~~-mk~gailINv~RG~iVde~aL~~~L  146 (274)
                       +..+. +++++++|.++-|-.  .+.+.+.+
T Consensus        82 -~l~~~~l~~~~iiiS~~agi~--~~~l~~~l  110 (280)
T 3tri_A           82 -ELKDILSETKILVISLAVGVT--TPLIEKWL  110 (280)
T ss_dssp             -HHHHHHHTTTCEEEECCTTCC--HHHHHHHH
T ss_pred             -HHHhhccCCCeEEEEecCCCC--HHHHHHHc
Confidence             34444 688889998776543  34555543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.65  E-value=6.1e-08  Score=79.38  Aligned_cols=105  Identities=13%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             CCCCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          40 LQNSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        40 L~gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      ++-++|+|||+    |.||..++++|+..|++++.++++. ..   -.|.... +++|+....|++++++| .+....++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~-~~---i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~   86 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY-DE---IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA   86 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC-SE---ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC-Ce---ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence            46789999999    9999999999999999644444432 11   1455544 89999999999999999 56777777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      . +..+ +..++++++++.    ..+++.+..++.|+.++|
T Consensus        87 ~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~~ig  121 (138)
T 1y81_A           87 K-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVEYSF  121 (138)
T ss_dssp             H-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCEEEC
T ss_pred             H-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCEEEc
Confidence            4 3444 566778887754    368888889999999988

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.63  E-value=1.2e-07  Score=86.97  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-CC--------------c-ccCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-GA--------------E-HTNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-g~--------------~-~~sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||+|.||..+|..|...|.++++++++..... ..+. +.              . ..+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999999999997666654433222 2222 21              1 2378888899999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ... +..++ ++..+.+++++++|+. -|.......+.+.+.+
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            654 45555 4566778999999998 3311233334454544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.60  E-value=1.1e-07  Score=86.97  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh--HhhcCC---ccc---CHHHHhcccCEEEEcCCCCc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGA---EHT---NIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~g~---~~~---sl~ell~~aDvVil~lPlt~  108 (274)
                      .++.+++++|+|.|.+|+++|..|...|++.+...+|+. +.+  +...+.   ...   ++.+.++++|+|+.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            468899999999999999999999999984444444443 322  333333   222   45667889999999999754


Q ss_pred             cc--HH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         109 DT--HH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       109 ~T--~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ..  .. .++   .+.++++++++|++.. +... .|.+..+++|+.++|
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~  261 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQN  261 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEEC
Confidence            31  11 122   3457899999999985 3333 477778888887776

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.58  E-value=5e-08  Score=83.34  Aligned_cols=91  Identities=13%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcC-------CcccCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRG-------AEHTNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g-------~~~~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++|+|+| .|.||+.+|+.|...|.++++++++..+.. . ...+       +...+++++++++|+|++++|. ..++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            4799999 999999999999999997777765433222 1 1112       3334788889999999999994 44555


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCch
Q psy3240         113 LINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ++. +..+.+ +++++|++++|--
T Consensus        80 ~~~-~l~~~~-~~~~vi~~~~g~~  101 (212)
T 1jay_A           80 TAR-DLKNIL-REKIVVSPLVPVS  101 (212)
T ss_dssp             HHH-HTHHHH-TTSEEEECCCCEE
T ss_pred             HHH-HHHHHc-CCCEEEEcCCCcC
Confidence            543 233344 4899999998654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.58  E-value=7.5e-08  Score=87.66  Aligned_cols=114  Identities=10%  Similarity=0.089  Sum_probs=77.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhHhhcCCcc---cCHHHHhcccCEEEEcCCCC--ccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEADKRGAEH---TNIDDLCKQSDFIIITSALT--PDT  110 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~~~g~~~---~sl~ell~~aDvVil~lPlt--~~T  110 (274)
                      +.+++|+++.|+|.|.+|++++..|...|+ ++++++++..+.+........   .++.++++++|+|+.++|..  +..
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~  191 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNT  191 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence            457899999999999999999999999998 555554433322221122222   24566788999999999974  222


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ...++   .+.++++++++|+..... . ..+.+..+++|+..+|
T Consensus       192 ~~~l~---~~~l~~~~~V~D~vY~P~-~-T~ll~~A~~~G~~~~~  231 (277)
T 3don_A          192 DSVIS---LNRLASHTLVSDIVYNPY-K-TPILIEAEQRGNPIYN  231 (277)
T ss_dssp             CCSSC---CTTCCSSCEEEESCCSSS-S-CHHHHHHHHTTCCEEC
T ss_pred             cCCCC---HHHcCCCCEEEEecCCCC-C-CHHHHHHHHCcCEEeC
Confidence            11232   456789999999987643 3 3577778888887766

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.56  E-value=7e-08  Score=87.66  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH-
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL-  119 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l-  119 (274)
                      ++++.|||.|.+|++++..|...|.++.+++++..+.+ ..+.++...+++++- ++|+|+.++|..-.....++.+.+ 
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH
Confidence            89999999999999999999999965555544444433 224555544555543 899999999986432233555533 


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +.++++.+++|+....   +..+.+..+++|+..+|
T Consensus       197 ~~l~~~~~v~D~vY~P---~T~ll~~A~~~G~~~~~  229 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF---LTPFLSLAKELKTPFQD  229 (269)
T ss_dssp             HHHHHCSEEEESCCSS---CCHHHHHHHHTTCCEEC
T ss_pred             hhCCCCCEEEEeCCCC---chHHHHHHHHCcCEEEC
Confidence            2567899999999875   34477778888887766

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.56  E-value=1.7e-07  Score=82.28  Aligned_cols=100  Identities=19%  Similarity=0.195  Sum_probs=71.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHh-cccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLC-KQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      ++|||||+|.||+.+++.+...|++++...++..+.  ..   .+.++++++ .++|+|++++|..... .    .....
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~--~~---~~~~~~~l~~~~~DvVv~~~~~~~~~-~----~~~~~   70 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH--EK---MVRGIDEFLQREMDVAVEAASQQAVK-D----YAEKI   70 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC--TT---EESSHHHHTTSCCSEEEECSCHHHHH-H----HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch--hh---hcCCHHHHhcCCCCEEEECCCHHHHH-H----HHHHH
Confidence            479999999999999999988888765455544322  11   345899999 6999999999953222 2    22345


Q ss_pred             CCCCcEEEEcCCCchhcH---HHHHhhhhhhhhe
Q psy3240         122 MKPGAILINTSRGQLVDQ---EALIDFIADIRVI  152 (274)
Q Consensus       122 mk~gailINv~RG~iVde---~aL~~~L~~~~i~  152 (274)
                      ++.|..+|+.+.+..-+.   +.|.+..+++|+.
T Consensus        71 l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           71 LKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            678999999988876655   5677766665554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.55  E-value=8.3e-08  Score=83.45  Aligned_cols=90  Identities=20%  Similarity=0.338  Sum_probs=62.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      -++|+|||+|+||+.+|+.|...|.++++..+|.... +  ....+.... +..+.++++|+|++++|. ...+.++.. 
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~-  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ-  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence            3689999999999999999999999777634544432 2  234465443 556678999999999993 333333321 


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q psy3240         118 RLESMKPGAILINTSRGQ  135 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~  135 (274)
                       +.. .++.++|+++-|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             222 3588999998654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.55  E-value=2.4e-07  Score=89.50  Aligned_cols=95  Identities=25%  Similarity=0.290  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-----Ch--hHhhcCCcccCHHHHhcccCEEEEcCCCCccc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-----KP--EADKRGAEHTNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-----~~--~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .-|+||+|+|||+|+-|.+-|.+|+..|.++++.-+...     +.  .+.+.|....+.+|+++.||+|++.+|.. ..
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~-~q  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-QH  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGG-GH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChh-hH
Confidence            358999999999999999999999999997776654211     11  16678888889999999999999999964 34


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      ..++ ++..+.||+|+.|. .|.|=
T Consensus       112 ~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            4455 46999999999987 55654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.54  E-value=1.3e-07  Score=85.98  Aligned_cols=90  Identities=11%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeC--CCCChh-HhhcCC-----------cc-c--CHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTS--RSKKPE-ADKRGA-----------EH-T--NIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~--r~~~~~-a~~~g~-----------~~-~--sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||+|.||..+|..|...|.+++++++  +....+ ..+.+.           .. .  ++.+.++.+|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988987766665  332222 223332           22 2  56778899999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .. .+..++ .+..+ +++++++|+++.|-
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~  107 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGL  107 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSE
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcC
Confidence            64 555555 34556 88999999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.51  E-value=1.2e-07  Score=84.82  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-------------cCHHHHhc---ccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-------------TNIDDLCK---QSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-------------~sl~ell~---~aDvVil~lP  105 (274)
                      ++|+|||+|.||..+|..|...|.++++++++..... ..+.|...             .+.+++.+   .+|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999997777655433222 22223211             13444444   8999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      . ..++.++ ++..+.+++++++|+++.|- -..+.+.+.+.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~  122 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVP  122 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSC
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcC
Confidence            4 4555555 34566788999999997653 23355555443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.51  E-value=2.6e-07  Score=87.73  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=73.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC------------------cc-cCHHHHhcccCEEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA------------------EH-TNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~------------------~~-~sl~ell~~aDvVil  102 (274)
                      ++|+|||+|.||..+|..|.. |.++++++.+..+.. ..+.+.                  .. .++.+.++.||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999998 987777765433322 222222                  22 257788899999999


Q ss_pred             cCCCCc----------ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         103 TSALTP----------DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       103 ~lPlt~----------~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ++|...          .++.++ ++..+ +++++++|+.++..+-..+.+.+.+.+
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~  133 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT  133 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC
Confidence            999753          244444 34555 899999999888776667777775543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.51  E-value=2.7e-07  Score=89.78  Aligned_cols=107  Identities=17%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-------C-------------Ccc-cCHHHHhcccC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-------G-------------AEH-TNIDDLCKQSD   98 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-------g-------------~~~-~sl~ell~~aD   98 (274)
                      ..++|+|||+|.||..+|..|...|.++++++.+..+.+ ..+.       +             +.. .++++.++.||
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            357999999999999999999999998777765433322 1111       1             122 26778889999


Q ss_pred             EEEEcCCCC---------cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240          99 FIIITSALT---------PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus        99 vVil~lPlt---------~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      +|++|+|..         ...+.++ ++..+.+++++++|+.|...+-..+.+.+.+.+
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            999999963         2333343 345667999999999986544445555555544

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.50  E-value=2.8e-07  Score=89.18  Aligned_cols=100  Identities=19%  Similarity=0.260  Sum_probs=67.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----------cC-----------Cc-ccCHHHHhccc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----------RG-----------AE-HTNIDDLCKQS   97 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----------~g-----------~~-~~sl~ell~~a   97 (274)
                      -++|+|||+|.||..+|..|...|.++++++.+..... ..+           .|           .. ..++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            46899999999999999999999998777765433221 111           01           01 1255 568899


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      |+|+.++|...+.+.-+-.+..+.++++++|+.. +..+ ....+.+
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~~-~~~~la~  160 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSAL-NVDDIAS  160 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSS-CHHHHHT
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCCc-CHHHHHH
Confidence            9999999975444443434566678999999873 3332 3345665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.50  E-value=7.9e-08  Score=97.86  Aligned_cols=91  Identities=14%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcCC-------------cc-cCHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRGA-------------EH-TNIDDLCK   95 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g~-------------~~-~sl~ell~   95 (274)
                      =++|||||+|.||..+|..+...|.++++++.+..... .           .+.|.             .. .++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            35799999999999999999999998888776543221 1           11221             11 245 6788


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCC
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSR  133 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~R  133 (274)
                      +||+|+.++|...+.+..+-.+..+.++++++++ |+|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt  431 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST  431 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence            9999999999877666555456777889999997 4543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.49  E-value=4.7e-08  Score=90.75  Aligned_cols=92  Identities=8%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC--------------Ccc-cCHHHHhcccCEEEEcCCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG--------------AEH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g--------------~~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      +|+|||+|.||..+|..|...|.++++|+++....+ ..+.+              +.. .+++++++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999988987666654432222 22211              222 3688889999999999994 


Q ss_pred             cccHHhccHH---HHhcCCC-CcEEEEcCCCch
Q psy3240         108 PDTHHLINRA---RLESMKP-GAILINTSRGQL  136 (274)
Q Consensus       108 ~~T~~li~~~---~l~~mk~-gailINv~RG~i  136 (274)
                      ..++.++...   ..+.+++ ++++|+++.|-.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            5556665431   4455678 899999986643

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.49  E-value=2.6e-07  Score=89.83  Aligned_cols=105  Identities=14%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChhHhhc--------------------CCcc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKR--------------------GAEH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~a~~~--------------------g~~~-~sl~ell~~aDv   99 (274)
                      ++|+|||+|.||..+|..|...  |.++++++.+..+.+....                    ++.. .++.+.++.||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  7877777654332221111                    1222 256788899999


Q ss_pred             EEEcCCCCcc--------------cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         100 IIITSALTPD--------------THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       100 Vil~lPlt~~--------------T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      |++|+|....              .+..+ ++..+.+++++++|+.|+..+-..+.+.+.+++
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999986432              22222 456677999999999988776566667776665

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.48  E-value=1.9e-07  Score=87.65  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC--------------Ccc-cCHHHHhcccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG--------------AEH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g--------------~~~-~sl~ell~~aDvVil~l  104 (274)
                      ..++|+|||.|.||..+|..|...|.++.+|+++....+ ..+.+              +.. .+++++++.||+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            347899999999999999999999997777765433222 22222              122 37889999999999999


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      |. ...+.++ ++..+.+++++++|+++.|-..+
T Consensus       108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            95 3555555 45667789999999998765544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.47  E-value=3.3e-07  Score=81.25  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---CC----c-ccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---GA----E-HTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---g~----~-~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      ++|+|||+|.||..+|..|...|.++++++++..+.. ....   +.    . ..+..+.++.+|+|++++|.. .++.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence            4799999999999999999999997777765544322 1111   21    0 123346778899999999965 45666


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q psy3240         114 INRARLESMKPGAILINTSRG  134 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG  134 (274)
                      + ++..+.+++++++|++..|
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HHHHhhCCCCCEEEEecCC
Confidence            5 3566778899999998655

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.46  E-value=6.2e-07  Score=86.43  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=74.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc---cCHHHH---------------hcccCEE
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH---TNIDDL---------------CKQSDFI  100 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~---~sl~el---------------l~~aDvV  100 (274)
                      .-+|.++.|||+|.||..+|..|...|.++++||.+..+.+....+...   ..++|+               +++||+|
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             cccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            3578999999999999999999999999877777655443322222211   133433               3579999


Q ss_pred             EEcCCCCcc--------cHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         101 IITSALTPD--------THHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       101 il~lPlt~~--------T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                      ++|+|....        ...+..  +...+.|++|+++|+.|+..+-..+.+.+.+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence            999996542        223432  4677889999999999988877777776654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.46  E-value=2.4e-07  Score=85.18  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC-------CeEEEEeCCCC-----Chh-Hhhc--------------CCcc-cCHHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK-------VSKFLYTSRSK-----KPE-ADKR--------------GAEH-TNIDDL   93 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G-------~~vv~~~~r~~-----~~~-a~~~--------------g~~~-~sl~el   93 (274)
                      .++|+|||+|.||..+|..|...|       .++++++++..     ... ..+.              ++.. .+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998877       76666655443     222 1111              1222 367888


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ++.||+|++++|. ..++.++ ++..+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 4555555 345567889999999988654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.44  E-value=4.4e-07  Score=88.53  Aligned_cols=102  Identities=22%  Similarity=0.250  Sum_probs=75.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CC-eEEEEeCCCC----ChhHhh----------------------cC-CcccCHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KV-SKFLYTSRSK----KPEADK----------------------RG-AEHTNIDDL   93 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~-~vv~~~~r~~----~~~a~~----------------------~g-~~~~sl~el   93 (274)
                      ++|+|||+|.||..+|..|... |. ++++|+.+..    +.+...                      .+ ....+-.+.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea   98 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR   98 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence            6899999999999999999999 99 9988887665    222111                      12 122222678


Q ss_pred             hcccCEEEEcCCCC--------cccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          94 CKQSDFIIITSALT--------PDTHHLIN--RARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        94 l~~aDvVil~lPlt--------~~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++.||+|++|+|..        +++..+..  ....+.+++|+++|+.|+..+-..+.+.+
T Consensus        99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            89999999999975        34444442  45777899999999999877766666665

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.44  E-value=2e-07  Score=87.11  Aligned_cols=91  Identities=10%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCC-------CeEEEEeCCCC-----Chh-Hhhc--------------CCcc-cCHHHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK-------VSKFLYTSRSK-----KPE-ADKR--------------GAEH-TNIDDLC   94 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G-------~~vv~~~~r~~-----~~~-a~~~--------------g~~~-~sl~ell   94 (274)
                      ++|+|||+|.||..+|..|...|       .++++|+++..     ..+ ..+.              ++.. .++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998777       77777765544     222 1111              1222 2678889


Q ss_pred             cccCEEEEcCCCCcccHHhccHHHHh----cCCCCcEEEEcCCCc
Q psy3240          95 KQSDFIIITSALTPDTHHLINRARLE----SMKPGAILINTSRGQ  135 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~~~l~----~mk~gailINv~RG~  135 (274)
                      +.+|+|++++|. ...+.++. +..+    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999994 55665553 3445    688999999998763

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.43  E-value=2.4e-07  Score=83.13  Aligned_cols=108  Identities=14%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhH--hhcCC-cccCHHHHhcccCEEEEcCCCC--cccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEA--DKRGA-EHTNIDDLCKQSDFIIITSALT--PDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a--~~~g~-~~~sl~ell~~aDvVil~lPlt--~~T~~  112 (274)
                      +++| +++|||.|.+|++++..|...|+ ++.+++++..+.+.  ...+. ...++.+.++++|+|++++|..  ++ ..
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~  183 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-EL  183 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CC
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CC
Confidence            4678 99999999999999999999998 55555544332221  11121 2236778899999999999964  22 12


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe-eeh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI-SIS  155 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~-~~D  155 (274)
                      .++.+.   ++++.+++|+..+    +..+++..+++|+. .+|
T Consensus       184 ~i~~~~---l~~~~~V~Divy~----~T~ll~~A~~~G~~~~~~  220 (253)
T 3u62_A          184 PVSDDS---LKNLSLVYDVIYF----DTPLVVKARKLGVKHIIK  220 (253)
T ss_dssp             SCCHHH---HTTCSEEEECSSS----CCHHHHHHHHHTCSEEEC
T ss_pred             CCCHHH---hCcCCEEEEeeCC----CcHHHHHHHHCCCcEEEC
Confidence            344444   4789999999988    45566666667776 655

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.43  E-value=2.4e-07  Score=85.16  Aligned_cols=99  Identities=12%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC-----------Ccc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG-----------AEH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g-----------~~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      -.+|+|||+|.||..+|..|...|.++.+++++..+.+ ..+.|           +.. .++++ ++.+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            46899999999999999999999997666655433322 22333           233 36778 8899999999994 6


Q ss_pred             ccHHhccHHHHhcCC-CCcEEEEcCCCchh-cHHHHHhhhh
Q psy3240         109 DTHHLINRARLESMK-PGAILINTSRGQLV-DQEALIDFIA  147 (274)
Q Consensus       109 ~T~~li~~~~l~~mk-~gailINv~RG~iV-de~aL~~~L~  147 (274)
                      .++.++     ..++ +++++|+++.|--. ..+.+.+.+.
T Consensus        92 ~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           92 YIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             GHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             HHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            665554     3343 78999999876322 2334444443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.42  E-value=4.5e-07  Score=75.83  Aligned_cols=111  Identities=11%  Similarity=0.137  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCccc-----C---HHHH--hcccCEEEEcCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEHT-----N---IDDL--CKQSDFIIITSA  105 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~~-----s---l~el--l~~aDvVil~lP  105 (274)
                      .++.+++|+|+|+|.||+.+|+.|+.. |.++++++++..+.. ....|+...     +   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            467889999999999999999999998 998888876554333 344565421     2   3334  678999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ..+.+..++  ..+..+.+...+|..+.+     ..-.+.|++.|+.++.
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~~~-----~~~~~~l~~~G~~~vi  157 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIAEY-----PDQLEGLLESGVDAAF  157 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEESS-----HHHHHHHHHHTCSEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEECC-----HHHHHHHHHcCCCEEE
Confidence            755554443  355666766666654432     1223345555655443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.41  E-value=4.5e-07  Score=83.14  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=66.1

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++|+++.|||.|. +|+.+|+.|...|+++.+.++++            .++.+.+++||+|+.+++..    +++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~p----~lI~  217 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGKP----GFIP  217 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCCT----TCBC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCCc----CcCC
Confidence            5689999999999997 59999999999999877765443            36889999999999999832    2576


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.   +|||+++||+|.-.
T Consensus       218 ~~~---vk~GavVIDVgi~r  234 (288)
T 1b0a_A          218 GDW---IKEGAIVIDVGINR  234 (288)
T ss_dssp             TTT---SCTTCEEEECCCEE
T ss_pred             HHH---cCCCcEEEEccCCc
Confidence            655   49999999999644

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.41  E-value=2.2e-07  Score=76.52  Aligned_cols=105  Identities=10%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      -++|+|||+    |++|..+++.|+..|++++.+++......  -.|.... +++|+....|++++++| .+....++..
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~--i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~   89 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT--LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE   89 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE--ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc--cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH
Confidence            578999999    89999999999999987544444321011  1355543 78888889999999999 4677777743


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       ..+ ...++++++.+.-    ++++.+.+++.|+.++.
T Consensus        90 -~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           90 -AIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             -HHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred             -HHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence             333 4667788876432    78888889998998874

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.40  E-value=6.1e-07  Score=82.16  Aligned_cols=80  Identities=16%  Similarity=0.319  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++||++.|||.|. +|+.+|+.|...|+++.+.++++            .++++.+++||+|+.+++.    .+++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~  218 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLR  218 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcCC
Confidence            4689999999999988 69999999999999776665432            2688999999999999984    24566


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.   +|||+++||++.-.
T Consensus       219 ~~~---vk~GavVIDVgi~~  235 (285)
T 3p2o_A          219 SDM---VKEGVIVVDVGINR  235 (285)
T ss_dssp             GGG---SCTTEEEEECCCEE
T ss_pred             HHH---cCCCeEEEEeccCc
Confidence            544   59999999999643

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.39  E-value=6.5e-07  Score=81.94  Aligned_cols=79  Identities=19%  Similarity=0.311  Sum_probs=64.6

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+|+||++.|||.|. +|+.+|+.|...|+++.+.++++            .++++.+++||+|+.+++.    .+++.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I~  219 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFIT  219 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCCC
Confidence            4689999999999988 69999999999999766665432            2688999999999999984    23466


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .+.   +|||+++||++.-
T Consensus       220 ~~~---vk~GavVIDvgi~  235 (285)
T 3l07_A          220 ADM---VKEGAVVIDVGIN  235 (285)
T ss_dssp             GGG---SCTTCEEEECCCE
T ss_pred             HHH---cCCCcEEEEeccc
Confidence            544   5999999999853

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.38  E-value=5.7e-07  Score=81.98  Aligned_cols=77  Identities=18%  Similarity=0.357  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          40 LQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        40 L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      ++|+++.|||.|. +|+.+|+.|...|+++.+.++++            .++++.+++||+|+.+++.    .+++..+.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGR----PGFLNREM  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSC----TTCBCGGG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCC----CccccHhh
Confidence            9999999999986 79999999999999877765432            3688999999999999985    23566654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q psy3240         119 LESMKPGAILINTSRGQ  135 (274)
Q Consensus       119 l~~mk~gailINv~RG~  135 (274)
                         +|+|+++||+|.-.
T Consensus       212 ---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 ---VTPGSVVIDVGINY  225 (276)
T ss_dssp             ---CCTTCEEEECCCEE
T ss_pred             ---ccCCcEEEEeccCc
Confidence               59999999999643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.37  E-value=6.7e-07  Score=81.88  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++||++.|||.|. +|+.+|+.|...|+++.+..+++            .++++.+++||+|+.+++.    .+++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I~  219 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLVK  219 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCCC
Confidence            5689999999999987 79999999999999777665443            2688999999999999984    24566


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.   +|||+++||++.-.
T Consensus       220 ~~~---vk~GavVIDvgi~~  236 (286)
T 4a5o_A          220 GEW---IKEGAIVIDVGINR  236 (286)
T ss_dssp             GGG---SCTTCEEEECCSCS
T ss_pred             HHH---cCCCeEEEEecccc
Confidence            654   49999999998643

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.36  E-value=1e-06  Score=81.15  Aligned_cols=80  Identities=18%  Similarity=0.391  Sum_probs=66.2

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.|+++.|||.|. +|+.+|+.|...|+++.+.++++            .++.+.+++||+|+.+++..    +++.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~p----~~I~  223 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQP----EMVK  223 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCCT----TCBC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCCc----ccCC
Confidence            5689999999999996 69999999999999777765432            36889999999999999852    3566


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q psy3240         116 RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~  135 (274)
                      .+.   +|||+++||+|.-.
T Consensus       224 ~~~---vk~GavVIDVgi~~  240 (301)
T 1a4i_A          224 GEW---IKPGAIVIDCGINY  240 (301)
T ss_dssp             GGG---SCTTCEEEECCCBC
T ss_pred             HHH---cCCCcEEEEccCCC
Confidence            655   48999999999754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.36  E-value=9.1e-07  Score=80.81  Aligned_cols=80  Identities=19%  Similarity=0.357  Sum_probs=65.2

Q ss_pred             CCCCCCCEEEEEccChH-HHHHHHHHccC--CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          37 GPALQNSTVGIVGCGRI-GLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        37 g~~L~gktVGIIGlG~I-G~~iA~~L~~~--G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +.+++|+++.|||.|.| |+.+|+.|...  |+++.+.++++            .++.+.+++||+|+.+++..    ++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~p----~~  216 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGVA----HL  216 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCCT----TC
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCCC----cc
Confidence            56899999999999986 99999999998  88766665433            36889999999999999842    24


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCc
Q psy3240         114 INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~  135 (274)
                      +..+.   +|+|+++||+|.-.
T Consensus       217 I~~~~---vk~GavVIDVgi~r  235 (281)
T 2c2x_A          217 LTADM---VRPGAAVIDVGVSR  235 (281)
T ss_dssp             BCGGG---SCTTCEEEECCEEE
T ss_pred             cCHHH---cCCCcEEEEccCCC
Confidence            76655   48999999999644

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.35  E-value=6.7e-07  Score=82.44  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=65.1

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHH--HHhcccCEEEEcCCCCcccHHh
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNID--DLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~--ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +.+++|+++.|||.|. +|+.+|+.|...|+++.+.++++.            +++  +.+++||+|+.++|.    .++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~~  223 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PGY  223 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CCC
Confidence            4689999999999988 799999999999997777665433            355  899999999999985    235


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCc
Q psy3240         114 INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~  135 (274)
                      +..+.   +|+|+++||++.-.
T Consensus       224 I~~~~---vk~GavVIDvgi~~  242 (300)
T 4a26_A          224 VKGEW---IKEGAAVVDVGTTP  242 (300)
T ss_dssp             BCGGG---SCTTCEEEECCCEE
T ss_pred             CcHHh---cCCCcEEEEEeccC
Confidence            66544   59999999999644

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.33  E-value=4.3e-07  Score=92.61  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----------hcCC-------------cc-cCHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----------KRGA-------------EH-TNIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----------~~g~-------------~~-~sl~ell~~   96 (274)
                      ++|+|||+|.||..+|..+...|.++++++.+..... ..           +.|.             .. .++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            6899999999999999999999998888776543221 10           1121             11 255 57889


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEE-cCC
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILIN-TSR  133 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailIN-v~R  133 (274)
                      ||+|+.++|...+.+.-+-.+..+.++++++++. +|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt  429 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST  429 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence            9999999998766555454566777899999864 543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.31  E-value=5.2e-06  Score=76.62  Aligned_cols=90  Identities=19%  Similarity=0.356  Sum_probs=66.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh-Hhh----cCCc--ccCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE-ADK----RGAE--HTNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~-a~~----~g~~--~~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ..++++|||.|.||+.+++.|.. ++.+.+.+++|+.... +.+    .|+.  ..++++++++||+|++|+|...   .
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~---p  196 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTT---P  196 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSS---C
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCC---c
Confidence            46899999999999999999875 4565555555553322 222    3553  2399999999999999999743   4


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCch
Q psy3240         113 LINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ++..   +.++||+.++++|...+
T Consensus       197 vl~~---~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          197 LFAG---QALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             SSCG---GGCCTTCEEEECCCSST
T ss_pred             ccCH---HHcCCCcEEEECCCCCC
Confidence            5543   45899999999998654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.26  E-value=8.5e-07  Score=83.08  Aligned_cols=113  Identities=11%  Similarity=0.097  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCCh-h--Hhhc----CC--cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKP-E--ADKR----GA--EH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~-~--a~~~----g~--~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      ...++++|||+|.||+.+++.+. ..+.+.+.+++|+... +  +...    ++  .. .++++++++||+|++|+|...
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~  206 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  206 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence            35689999999999999998875 3555555555555432 2  2222    43  22 389999999999999999752


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                       ...++..   +.+++|+.++++|...+- ...|-..+..++..++|..
T Consensus       207 -~~pvl~~---~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~  250 (350)
T 1x7d_A          207 -YATIITP---DMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE  250 (350)
T ss_dssp             -EEEEECG---GGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred             -CCceecH---HHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence             2345543   467999999999975542 1111112222355788843

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.25  E-value=5.4e-07  Score=83.77  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             CCCCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChh--HhhcC---Ccc--------cCHHHHhcccCEEE
Q psy3240          36 CGPALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG---AEH--------TNIDDLCKQSDFII  101 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g---~~~--------~sl~ell~~aDvVi  101 (274)
                      .|.++.|+++.|||.|.| |+.+|+.|.+.|+++.+.+++.....  +...+   ...        .++.+.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            356899999999999976 99999999999997665543311110  11111   111        36889999999999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .+++..   .-+|..+.   +|+|+++||+|.-.
T Consensus       251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          251 TGVPSE---NYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             ECCCCT---TCCBCTTT---SCTTEEEEECSSSC
T ss_pred             ECCCCC---cceeCHHH---cCCCeEEEEcCCCc
Confidence            999852   12366655   48999999998643

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.25  E-value=2.8e-06  Score=78.87  Aligned_cols=101  Identities=19%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC--------------Ccc-cCHHHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG--------------AEH-TNIDDL   93 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g--------------~~~-~sl~el   93 (274)
                      .-.+|+|||.|.||+.+|..+...|++|++||....... +           .+.|              +.. .++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            346899999999999999999999999988886543211 0           0111              111 278889


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      ++.||+|+=++|-.-+.+.-+-++.=+.++++++|- |+|.   +....+.+
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs---l~is~ia~  133 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC---LLPSKLFT  133 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS---CCHHHHHT
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh---ccchhhhh
Confidence            999999999999888877766666777789999884 4444   44456666

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.25  E-value=3.6e-06  Score=68.73  Aligned_cols=97  Identities=10%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc-----C---HHHH-hcccCEEEEcCC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT-----N---IDDL-CKQSDFIIITSA  105 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~-----s---l~el-l~~aDvVil~lP  105 (274)
                      ...+.+++|.|+|+|.+|+.+|+.|+..|.++++++++..+.. .. ..|....     +   +.+. +..+|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            3677899999999999999999999999998777776554333 22 3444321     2   2222 678999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .......+  ......+.+...+|-..++.
T Consensus        94 ~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            64433322  23444455556666655554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.25  E-value=5.4e-07  Score=82.09  Aligned_cols=114  Identities=17%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--HhhcC----CcccCHHHHhcccCEEEEcCCCCcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--ADKRG----AEHTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~~~g----~~~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      |.+++|+++.|+|.|.+|++++..|...|+ ++.+++++..+.+  +...+    +...+++++.+++|+|+.++|..-.
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~  200 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD  200 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence            567899999999999999999999999997 5555554433322  22222    2334667766889999999998643


Q ss_pred             cH-HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe-eeh
Q psy3240         110 TH-HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI-SIS  155 (274)
Q Consensus       110 T~-~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~-~~D  155 (274)
                      .. ..+..   +.++++++++|+.-.. .. ..+.+..+++|+. .+|
T Consensus       201 ~~~~~l~~---~~l~~~~~V~DlvY~P-~~-T~ll~~A~~~G~~~~~~  243 (281)
T 3o8q_A          201 GELPAIDP---VIFSSRSVCYDMMYGK-GY-TVFNQWARQHGCAQAID  243 (281)
T ss_dssp             ---CSCCG---GGEEEEEEEEESCCCS-SC-CHHHHHHHHTTCSEEEC
T ss_pred             CCCCCCCH---HHhCcCCEEEEecCCC-cc-CHHHHHHHHCCCCEEEC
Confidence            21 12332   3467899999998764 33 3466777777876 655

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.23  E-value=6e-07  Score=80.80  Aligned_cols=101  Identities=10%  Similarity=0.065  Sum_probs=67.8

Q ss_pred             CEEEEEccChHHHHHHHHHccC-----C-CeEEEEeCCCCChh-Hhh-cCCccc--------------CHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-----K-VSKFLYTSRSKKPE-ADK-RGAEHT--------------NIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-----G-~~vv~~~~r~~~~~-a~~-~g~~~~--------------sl~ell~~aDvV  100 (274)
                      ++|+|||+|.||..+|..|...     | .+++++++ ..+.+ ..+ .|+...              +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999887     8 76666654 32222 233 444321              334567889999


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      ++++|... ++.++ ++..+.+++++++|++.-| +-..+.+.+.+.
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~  131 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLP  131 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSC
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCC
Confidence            99999654 55555 3455567789999998766 222345555443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.21  E-value=2.5e-07  Score=82.99  Aligned_cols=86  Identities=13%  Similarity=0.123  Sum_probs=53.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|||||+|+||+.+|+.|... .+++ +++++..+..  ....+....+++++++++|+|++++|... ..     +.+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~~-----~v~   75 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IK-----TVA   75 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HH-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-HH-----HHH
Confidence            4799999999999999999876 6553 4543322222  22345522367788889999999999743 33     333


Q ss_pred             hcC-CCCcEEEEcCCCc
Q psy3240         120 ESM-KPGAILINTSRGQ  135 (274)
Q Consensus       120 ~~m-k~gailINv~RG~  135 (274)
                      ..+ ++++++||++.+-
T Consensus        76 ~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           76 NHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             TTTCCSSCCEEECCSSS
T ss_pred             HHhccCCCEEEECCCCC
Confidence            344 6889999998553

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.15  E-value=2e-06  Score=77.26  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC----CcccCHHHHhc-ccCEEEEcCCCCcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG----AEHTNIDDLCK-QSDFIIITSALTPD  109 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g----~~~~sl~ell~-~aDvVil~lPlt~~  109 (274)
                      |.++.+++++|+|.|.+|+++|..|...|.++++++++..+.+  +...+    +...+++++.+ ++|+|+.++|....
T Consensus       114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC
Confidence            4578999999999999999999999999986666655433322  22211    22234555444 89999999997543


Q ss_pred             cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe-eeh
Q psy3240         110 THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI-SIS  155 (274)
Q Consensus       110 T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~-~~D  155 (274)
                      ..- -+..+.+   +++.+++|+......+.. +.+..+++|+. .+|
T Consensus       194 ~~~~~i~~~~l---~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~  237 (272)
T 1p77_A          194 GGTASVDAEIL---KLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD  237 (272)
T ss_dssp             ----CCCHHHH---HHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred             CCCCCCCHHHc---CCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence            210 1343433   578999999986544344 55556666765 554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.14  E-value=4.3e-06  Score=76.56  Aligned_cols=103  Identities=17%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC-------------cc-cCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA-------------EH-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~-------------~~-~sl~ell~~aDvVil~  103 (274)
                      ....++|+|||.|.||..+|..|...|.++.++ .+....+ ..+.|.             .. .++++ ++.+|+|+++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vila   93 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFC   93 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEEC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEE
Confidence            456789999999999999999999999977766 5433222 222232             11 24444 5889999999


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI  146 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L  146 (274)
                      +|.. .++.++ ++..+.+++++++|.+.-|= -.++.+.+.+
T Consensus        94 vk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~  133 (318)
T 3hwr_A           94 VKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLL  133 (318)
T ss_dssp             CCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHC
T ss_pred             cccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHc
Confidence            9965 566665 34556778999999987663 2234555533

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.11  E-value=3.4e-06  Score=77.85  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhhc-----CCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKR-----GAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~-----g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      ..++++|||+|.+|+.+++.|.. .+.+.+..++|+....   +...     .+...++++++ ++|+|++++|...   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~---  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRK---  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCC---
Confidence            56799999999999999999876 4555565566654332   2221     12334889999 9999999999643   


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         112 HLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      .++..   +.+++|+.++++|.-.+
T Consensus       200 pv~~~---~~l~~G~~V~~ig~~~p  221 (322)
T 1omo_A          200 PVVKA---EWVEEGTHINAIGADGP  221 (322)
T ss_dssp             CCBCG---GGCCTTCEEEECSCCST
T ss_pred             ceecH---HHcCCCeEEEECCCCCC
Confidence            44542   46799999999976544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.07  E-value=3.3e-06  Score=77.69  Aligned_cols=89  Identities=15%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-------------c-cCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-------------H-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-------------~-~sl~ell~~aDvVil~lPl  106 (274)
                      .++|+|||.|.||..+|..|...|.++.++++. ...+ ..+.|..             . .++++ ++.+|+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            468999999999999999999999877777653 2222 3333432             1 25665 5889999999996


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                       ..++.++. +..+.+++++++|.+.-|
T Consensus        81 -~~~~~~~~-~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 -PALESVAA-GIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             -HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred             -hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence             45555542 334457789999998888

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.07  E-value=5.3e-06  Score=74.44  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC----CcccCHHHHh-cccCEEEEcCCCCcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG----AEHTNIDDLC-KQSDFIIITSALTPD  109 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g----~~~~sl~ell-~~aDvVil~lPlt~~  109 (274)
                      |.++.|++++|+|.|.||+++|+.|...|.++++++++..+..  +...+    +...+++++. .++|+|+.++|....
T Consensus       114 ~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          114 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC
Confidence            4578899999999999999999999999986555544332222  22222    1123444444 589999999997543


Q ss_pred             cHHh--ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240         110 THHL--INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       110 T~~l--i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                      . .+  +..   ..++++.+++|+......  ..+.+..+++|+.
T Consensus       194 ~-~~~~i~~---~~l~~~~~v~D~~y~p~~--t~~~~~a~~~G~~  232 (271)
T 1nyt_A          194 G-DIPAIPS---SLIHPGIYCYDMFYQKGK--TPFLAWCEQRGSK  232 (271)
T ss_dssp             T-CCCCCCG---GGCCTTCEEEESCCCSSC--CHHHHHHHHTTCC
T ss_pred             C-CCCCCCH---HHcCCCCEEEEeccCCcC--CHHHHHHHHcCCC
Confidence            1 11  222   236789999999886422  2355556666665

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.07  E-value=1.7e-05  Score=62.12  Aligned_cols=89  Identities=17%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCcc-----cCHHH---H-hcccCEEEEcCCCCccc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEH-----TNIDD---L-CKQSDFIIITSALTPDT  110 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~-----~sl~e---l-l~~aDvVil~lPlt~~T  110 (274)
                      +++|+|+|+|.+|+.+|+.|...|.++++++++..... .. ..+...     .+.+.   . +..+|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            47899999999999999999999998777776543322 22 235432     12222   2 57899999999864332


Q ss_pred             HHhccHHHHhcCCCCcEEEEcC
Q psy3240         111 HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~  132 (274)
                      .  .-....+.++++.+++-+.
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEECS
T ss_pred             H--HHHHHHHHcCCCEEEEEec
Confidence            2  2224455577777766443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.06  E-value=5.4e-06  Score=66.75  Aligned_cols=89  Identities=18%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----C---HHHH-hcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----N---IDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----s---l~el-l~~aDvVil~lPlt~~T~  111 (274)
                      ..+|.|+|+|.+|+.+|+.|+..|.++++++.+..... ..+.|+...     +   +.++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            35799999999999999999999998888887655443 444565421     2   2221 468999999999766554


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                      .++  ..+..+.++..+|-..
T Consensus        87 ~~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEEE
Confidence            443  3445555666665433

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.05  E-value=8.6e-06  Score=73.74  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=76.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcC---CcccCHHHHh-cccCEEEEcCCCCcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRG---AEHTNIDDLC-KQSDFIIITSALTPD  109 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g---~~~~sl~ell-~~aDvVil~lPlt~~  109 (274)
                      |.+++|+++.|+|.|.+|++++..|...|+..+...+|+... +  +...+   +...+++++- .++|+|+.++|..-.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~  194 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT  194 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence            457899999999999999999999999997445445555432 2  22222   2233555554 789999999997422


Q ss_pred             cH-HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe-eeh
Q psy3240         110 TH-HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI-SIS  155 (274)
Q Consensus       110 T~-~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~-~~D  155 (274)
                      .. ..+..   +.++++++++|+.-.. .. ..+.+..+++|+. .+|
T Consensus       195 ~~~~~i~~---~~l~~~~~V~DlvY~P-~~-T~ll~~A~~~G~~~~~~  237 (272)
T 3pwz_A          195 ADLPPLPA---DVLGEAALAYELAYGK-GL-TPFLRLAREQGQARLAD  237 (272)
T ss_dssp             TCCCCCCG---GGGTTCSEEEESSCSC-CS-CHHHHHHHHHSCCEEEC
T ss_pred             CCCCCCCH---HHhCcCCEEEEeecCC-CC-CHHHHHHHHCCCCEEEC
Confidence            11 12333   3468999999998764 22 3466667777876 655

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.98  E-value=3.7e-05  Score=69.44  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=72.1

Q ss_pred             CCEEEEEccChHHHH-HHHHHcc-CCCeEEEEeCCCCCh-h--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLS-VLEKLIP-YKVSKFLYTSRSKKP-E--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~-iA~~L~~-~G~~vv~~~~r~~~~-~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      ..+|||||+|.||+. .++.++. -+++++.+.++.... .  +...|+.. .+++++++++|+|++++|........  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            478999999999996 8888876 467666555554432 2  34456653 58999999999999999964433222  


Q ss_pred             HHHHhcCCCCcEEEE-cCCCchhcHHHHHhhhhhhhheee
Q psy3240         116 RARLESMKPGAILIN-TSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       116 ~~~l~~mk~gailIN-v~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ...++.=|  .+++. ...-.+-+.++|.+..++.|+.+.
T Consensus        84 ~~al~~gk--~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~  121 (308)
T 3uuw_A           84 KILLNLGV--HVYVDKPLASTVSQGEELIELSTKKNLNLM  121 (308)
T ss_dssp             HHHHHTTC--EEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHCCC--cEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            23333222  25554 233455577788888888776443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.96  E-value=2.5e-05  Score=71.18  Aligned_cols=113  Identities=12%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHH--hcccCEEEEcCCCC--cccH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDL--CKQSDFIIITSALT--PDTH  111 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~el--l~~aDvVil~lPlt--~~T~  111 (274)
                      |.++.|+++.|+|.|.+|++++..|...|++.+...+|+.... .........+++++  + ++|+|+.++|..  +...
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~~~  195 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNL-KGDVIINCTPKGMYPKEG  195 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTSTT
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhc-cCCEEEECCccCccCCCc
Confidence            5678999999999999999999999999984444444443322 22222222233332  4 899999999973  2211


Q ss_pred             -HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         112 -HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       112 -~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       -.+..+.+   +++.+++|+.-...  +..|++.-+++|+..+|
T Consensus       196 ~~pi~~~~l---~~~~~v~DlvY~P~--~T~ll~~A~~~G~~~~~  235 (282)
T 3fbt_A          196 ESPVDKEVV---AKFSSAVDLIYNPV--ETLFLKYARESGVKAVN  235 (282)
T ss_dssp             CCSSCHHHH---TTCSEEEESCCSSS--SCHHHHHHHHTTCEEEC
T ss_pred             cCCCCHHHc---CCCCEEEEEeeCCC--CCHHHHHHHHCcCeEeC
Confidence             12455554   68899999975442  35666667777887666

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.95  E-value=4.7e-05  Score=72.40  Aligned_cols=96  Identities=14%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCC----CCCh--------h--HhhcCC--cccCHHHHhcccC
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSR----SKKP--------E--ADKRGA--EHTNIDDLCKQSD   98 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r----~~~~--------~--a~~~g~--~~~sl~ell~~aD   98 (274)
                      .|..+...+|.|+|.|.+|..+|+.|.+.|. +++++|++    ..+.        .  +...+.  ...+|+|+++.+|
T Consensus       186 ~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD  265 (388)
T 1vl6_A          186 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD  265 (388)
T ss_dssp             HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred             hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence            4678999999999999999999999999998 45666665    3221        1  222221  1237999999999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      +++-+..     .++++++.++.|+++++++.+|+-..
T Consensus       266 VlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          266 FFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            9988632     28899999999999999999997543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.95  E-value=1.4e-05  Score=73.08  Aligned_cols=101  Identities=11%  Similarity=0.105  Sum_probs=69.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC---------------cc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA---------------EH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~---------------~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|||.|.||..+|..|...|.++.+++++. .....+.|+               .. .+++++.+.+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            689999999999999999999998777766543 222222221               11 2566666689999999996


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA  147 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~  147 (274)
                      .. ++.++ +...+.+++++++|.+.-|= -.++.+.+.+.
T Consensus        82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~  119 (320)
T 3i83_A           82 VE-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFP  119 (320)
T ss_dssp             CT-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHST
T ss_pred             CC-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCC
Confidence            54 34444 34556678899999887652 23456666444

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.93  E-value=1.8e-05  Score=72.00  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc-----CCc--c---cCHHHHhcccCEEEEc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR-----GAE--H---TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~-----g~~--~---~sl~ell~~aDvVil~  103 (274)
                      +.+++|+++.|+|.|.+|++++..|...|++.+...+|+... +  +...     +..  .   .++++.++++|+|+.+
T Consensus       122 ~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          122 LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEEC
T ss_pred             CcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEEC
Confidence            357899999999999999999999999999544444554332 2  1111     111  1   2677888999999999


Q ss_pred             CCCCcccH--HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         104 SALTPDTH--HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       104 lPlt~~T~--~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|..-...  -.+.   .+.++++.+++|+.-...  +..|++.-+++|+..+|
T Consensus       202 Tp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P~--~T~ll~~A~~~G~~~~~  250 (283)
T 3jyo_A          202 TPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMPI--ETELLKAARALGCETLD  250 (283)
T ss_dssp             SSTTSTTSCSCSSC---GGGCCTTCEEEECCCSSS--SCHHHHHHHHHTCCEEC
T ss_pred             CCCCCCCCCCCCCC---HHHhCCCCEEEEecCCCC--CCHHHHHHHHCcCeEeC
Confidence            99642111  1133   345788999999976542  34566666777876665

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.91  E-value=4.4e-05  Score=69.98  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~  115 (274)
                      .+|||||+|.||+..++.++.. +++++.+.++.....   +...|... .+++++++  ++|+|++++|........  
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   82 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI--   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH--
Confidence            5899999999999999999876 676665555544332   34456543 48999998  899999999964433322  


Q ss_pred             HHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         116 RARLESMKPGAILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       116 ~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ...++.=|  .+++.-- .-.+-+.++|.+..++.|+.+
T Consensus        83 ~~al~~gk--~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  119 (344)
T 3euw_A           83 TRAVERGI--PALCEKPIDLDIEMVRACKEKIGDGASKV  119 (344)
T ss_dssp             HHHHHTTC--CEEECSCSCSCHHHHHHHHHHHGGGGGGE
T ss_pred             HHHHHcCC--cEEEECCCCCCHHHHHHHHHHHHhcCCeE
Confidence            23333222  3555432 334456667777777777643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.91  E-value=2.9e-05  Score=61.82  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=57.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-----cCHHHH----hcccCEEEEcCCCCcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-----TNIDDL----CKQSDFIIITSALTPD  109 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-----~sl~el----l~~aDvVil~lPlt~~  109 (274)
                      ..++++.|+|+|.+|+.+|+.|...|.++++++++..... ....+...     .+.+.+    +.++|+|++++|..+.
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence            3467899999999999999999999998888887554333 33445432     122222    4679999999994333


Q ss_pred             cHHhccHHHHhcCCCCcEEEEc
Q psy3240         110 THHLINRARLESMKPGAILINT  131 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv  131 (274)
                        .+.-...++.+....+++-+
T Consensus        84 --n~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           84 --NLKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             --HHHHHHHHHHHCCCCEEEEE
T ss_pred             --HHHHHHHHHHhCCceEEEEE
Confidence              23333444444544444433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.90  E-value=3.5e-05  Score=70.30  Aligned_cols=107  Identities=17%  Similarity=0.221  Sum_probs=71.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCCh-h--HhhcCCcccCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGAEHTNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+..++.++.. +++++.+.++.... .  +...++.+.+++++++  ++|+|++++|........  .
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--~   81 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTDTHADLI--E   81 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGGGHHHHH--H
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCchhHHHHH--H
Confidence            5899999999999999999875 67666555554432 2  4456777558999998  799999999964433322  2


Q ss_pred             HHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         117 ARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ..++   .|. +++.- -.-.+-+.++|.+..++.|+.+.
T Consensus        82 ~al~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (331)
T 4hkt_A           82 RFAR---AGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM  118 (331)
T ss_dssp             HHHH---TTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHH---cCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            3333   333 44432 23444566777777777776443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.90  E-value=2.6e-05  Score=61.31  Aligned_cols=95  Identities=13%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-----cCHH---HH-hcccCEEEEcCCCCc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-----TNID---DL-CKQSDFIIITSALTP  108 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-----~sl~---el-l~~aDvVil~lPlt~  108 (274)
                      .+.+++|+|+|+|.+|+.+++.|...|.++++++++..... ....+...     .+.+   ++ +..+|+|+.++|...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   82 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence            35678999999999999999999999998777776433222 22223321     1222   22 568999999998642


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      ++ .+.-......+.+. .+|-.+++.
T Consensus        83 ~~-~~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           83 QA-STLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HH-HHHHHHHHHHTTCS-EEEEECCSH
T ss_pred             HH-HHHHHHHHHHcCCC-eEEEEeCCH
Confidence            22 22223444556666 455444443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.90  E-value=4.6e-05  Score=70.25  Aligned_cols=106  Identities=15%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHh--cccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLC--KQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell--~~aDvVil~lPlt~~T~~li~  115 (274)
                      .+|||||+|.||+..++.++.. +++++.+.++.....   +...|+.. .++++++  .+.|+|++++|........  
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   83 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI--   83 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH--
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH--
Confidence            5899999999999999999887 776665555544322   34456654 4899999  5699999999975443322  


Q ss_pred             HHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         116 RARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       116 ~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ...++   .|. +++.-- .-.+-+.++|.+..++.|+.+
T Consensus        84 ~~al~---~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~  120 (354)
T 3db2_A           84 EQCAR---SGKHIYVEKPISVSLDHAQRIDQVIKETGVKF  120 (354)
T ss_dssp             HHHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHHCCCE
T ss_pred             HHHHH---cCCEEEEccCCCCCHHHHHHHHHHHHHcCCeE
Confidence            23333   333 444432 334456677777777766643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.89  E-value=3.2e-05  Score=70.32  Aligned_cols=101  Identities=15%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc--------------c-cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE--------------H-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~--------------~-~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||..+|..|...|.++.+++++. .....+.|..              . .+.++ ++.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC
Confidence            579999999999999999999998777776543 2223333321              1 14444 67899999999964


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                       .++.++ ++..+.+++++++|.+.-|= -.++.+.+.+..
T Consensus        81 -~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~  118 (312)
T 3hn2_A           81 -ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGA  118 (312)
T ss_dssp             -GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCG
T ss_pred             -CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCC
Confidence             344444 34556688999999987662 234556665543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.88  E-value=1.5e-05  Score=60.64  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=56.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCCCccc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPlt~~T  110 (274)
                      .+++|+|+|.|.||+.+++.|...| .++++++++..+.. ....++..        .++.++++.+|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4679999999999999999999999 66666665433322 22334321        135567889999999997432 2


Q ss_pred             HHhccHHHHhcCCCCcEEEEcC
Q psy3240         111 HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~  132 (274)
                      ..++.. .   .+.|.-.++++
T Consensus        83 ~~~~~~-~---~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKA-A---KAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHH-H---HHTTCEEECCC
T ss_pred             HHHHHH-H---HHhCCCEEEec
Confidence            222221 1   24566777765

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.86  E-value=3e-05  Score=71.46  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=63.8

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +-++.||++.|||-++ +|+.+|..|...++.+.+..+++.            ++.+..++||+|+.++.-    .+++.
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~------------dl~~~~~~ADIvV~A~G~----p~~i~  237 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQ------------NLPELVKQADIIVGAVGK----AELIQ  237 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHHTCSEEEECSCS----TTCBC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCC------------CHHHHhhcCCeEEeccCC----CCccc
Confidence            5689999999999864 699999999999997777665543            688899999999998753    24676


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q psy3240         116 RARLESMKPGAILINTSR  133 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R  133 (274)
                      .++   .|+|+++||+|-
T Consensus       238 ~d~---vk~GavVIDVGi  252 (303)
T 4b4u_A          238 KDW---IKQGAVVVDAGF  252 (303)
T ss_dssp             GGG---SCTTCEEEECCC
T ss_pred             ccc---ccCCCEEEEece
Confidence            654   599999999984

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.86  E-value=2.7e-05  Score=73.04  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---H-hh-cC---------C---------c-c-cCHHHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---A-DK-RG---------A---------E-H-TNIDDLCKQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a-~~-~g---------~---------~-~-~sl~ell~~   96 (274)
                      ++|+|||.|.||..+|..|.. .|.++++++.+.+..+   . .. .+         .         . . .+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            489999999999999999976 5887777762222111   1 11 11         1         1 2 267888999


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEc
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv  131 (274)
                      +|+|++++|.. ..+.++ ++..+.+++++++|..
T Consensus        83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999954 345554 3455667889999985

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.85  E-value=5.2e-05  Score=68.85  Aligned_cols=108  Identities=15%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CEEEEEccChHHHHH-HHHHccCCCeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCGRIGLSV-LEKLIPYKVSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~~i-A~~L~~~G~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||+|.||+.+ ++.++..+++++.+.++.....   +...++.  +.+++++++  ++|+|++++|........ 
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~-   79 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQT-   79 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHH-
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHH-
Confidence            379999999999998 7777667787665555544322   3445663  348999987  499999999953322211 


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheeeh
Q psy3240         115 NRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       115 ~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                          ...++.|. +++.- .....-+.+.|.+..++.|+.+..
T Consensus        80 ----~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~  118 (332)
T 2glx_A           80 ----LAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGT  118 (332)
T ss_dssp             ----HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             ----HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence                22244565 55542 233445667788877777775544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.84  E-value=9e-05  Score=67.19  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             CEEEEEccChHHHH-HHHHHcc-CCCeEEEEeCCCC-Chh--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIP-YKVSKFLYTSRSK-KPE--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~-~G~~vv~~~~r~~-~~~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+. +++.++. -+++++.+.++.. +..  +...|+.. .+++++..++|+|++++|........  .
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~--~   83 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV--S   83 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH--H
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHH--H
Confidence            58999999999997 8888865 4676664444444 333  34456654 37777767899999999964332222  1


Q ss_pred             HHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ..   ++.|. +++.- ....+-+.++|.+..++.|+.+..
T Consensus        84 ~a---l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           84 TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HH---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            22   34554 56652 334455677888888888876654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.83  E-value=1.8e-05  Score=71.36  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC----------CcccCHHHHhcccCEEEEcC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG----------AEHTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g----------~~~~sl~ell~~aDvVil~l  104 (274)
                      +.++.|+++.|+|.|.||+++|+.|...| ++++++++..+..  +...+          +...++.+.+.++|+|+.++
T Consensus       123 ~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          123 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT  201 (287)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECC
Confidence            34689999999999999999999999999 7766654433222  11111          11123356678899999999


Q ss_pred             CCCccc--HH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         105 ALTPDT--HH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       105 Plt~~T--~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      |.....  .. .+.  ..+.++++++++|++... ... .+.+..++.|+.+++
T Consensus       202 g~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~~~~~  251 (287)
T 1nvt_A          202 PIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNAKTIN  251 (287)
T ss_dssp             CTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTCEEEC
T ss_pred             CCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCCEEeC
Confidence            865321  00 120  135678999999998753 222 455666666766554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.81  E-value=2.2e-05  Score=72.63  Aligned_cols=115  Identities=11%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCC---Chh--Hhh----cCC--ccc---C---HHHHhcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSK---KPE--ADK----RGA--EHT---N---IDDLCKQSD   98 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~---~~~--a~~----~g~--~~~---s---l~ell~~aD   98 (274)
                      |.+++||++.|+|.|.+|+++|..|...|+ ++++++++..   +.+  +.+    .+.  ...   +   +.+.++++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            567999999999999999999999999999 4555554421   111  111    121  111   2   456678999


Q ss_pred             EEEEcCCCC--cccH-HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240          99 FIIITSALT--PDTH-HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus        99 vVil~lPlt--~~T~-~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|+.++|..  +... ..+.  ..+.++++.+++|+.-...  +..|++.-+++|+..+|
T Consensus       229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~--~T~ll~~A~~~G~~~~~  284 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT--KTRLLEIAEEQGCQTLN  284 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS--SCHHHHHHHHTTCEEEC
T ss_pred             EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC--CCHHHHHHHHCCCeEeC
Confidence            999999964  2111 1121  2345688999999976543  34566666777877666

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.80  E-value=5.9e-05  Score=61.68  Aligned_cols=103  Identities=10%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      -++|+|||.    |.+|..+++.|+..|++++-.++.  ...  -.|.... +++|+....|++++++|. +....++. 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~--~~~--i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK--YEE--VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT--CSE--ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCC--CCe--ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-
Confidence            689999999    799999999999999963333332  211  1355443 899998899999999996 55666664 


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +..+. ...++++..+.    .++++.+..++.|+.++.
T Consensus        96 ~~~~~-gi~~i~~~~g~----~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           96 QAIKK-GAKVVWFQYNT----YNREASKKADEAGLIIVA  129 (144)
T ss_dssp             HHHHH-TCSEEEECTTC----CCHHHHHHHHHTTCEEEE
T ss_pred             HHHHc-CCCEEEECCCc----hHHHHHHHHHHcCCEEEc
Confidence            33332 33456655432    378888888888887763

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.79  E-value=0.0001  Score=67.54  Aligned_cols=106  Identities=20%  Similarity=0.287  Sum_probs=69.7

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||+|.||+..++.++.. +++++.+.++.... .  +...++.  +.+++++++  ++|+|++++|........ 
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~-   81 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV-   81 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH-
Confidence            4899999999999999999875 66666555554432 2  3445653  358999998  799999999964332222 


Q ss_pred             cHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         115 NRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       115 ~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                       ...+   +.|. +++.-- .-.+-+.++|.+..++.|+.+
T Consensus        82 -~~al---~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~  118 (344)
T 3ezy_A           82 -IACA---KAKKHVFCEKPLSLNLADVDRMIEETKKADVIL  118 (344)
T ss_dssp             -HHHH---HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred             -HHHH---hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence             2333   3343 555532 344456677777777776643

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.78  E-value=2.9e-05  Score=63.34  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          41 QNSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        41 ~gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      .-++|+|||.    |++|..+++.|+..|++++-.++.  +....-.|.... +++|+....|++++++|. +....+++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~--~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~   88 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR--FQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP   88 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG--GTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCC--cccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence            4578999999    899999999999999963333222  101111355443 899998899999999996 55556664


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       +..+. ...+++++.+..    ++++.+..++.|+.++.
T Consensus        89 -~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           89 -EVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             -HHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred             -HHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence             33332 334666665432    57888888888887764

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.78  E-value=8.6e-05  Score=67.91  Aligned_cols=108  Identities=18%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      -.+|||||+|.||+..++.++.. +++++.+.++.....   +...++.  +.+++++++  ++|+|++++|........
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   84 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA   84 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHH
Confidence            36899999999999999999875 666665555554332   3455663  348999997  799999999965433222


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhheee
Q psy3240         114 INRARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       114 i~~~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~~~  154 (274)
                        ...++   .| .+++.-- .-.+-+.++|.+..++.|+.+.
T Consensus        85 --~~al~---~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~  122 (330)
T 3e9m_A           85 --KLALS---QGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM  122 (330)
T ss_dssp             --HHHHH---TTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             --HHHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence              23333   33 3555432 3444566777777777776544

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.76  E-value=6.5e-05  Score=69.23  Aligned_cols=107  Identities=14%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCCh-h--HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKP-E--ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~-~--a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      -.+|||||+|.||+..++.++..  +++++.+.++.... .  +...++.. .+++++++  ++|+|++++|........
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   92 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQS   92 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHH
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            46899999999999999999876  67666555554433 2  34557644 48999997  799999999964332222


Q ss_pred             ccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         114 INRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       114 i~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                        ...+   +.|. +++.- -...+-+.++|.+..++.|+.+
T Consensus        93 --~~al---~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~  129 (354)
T 3q2i_A           93 --IECS---EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHL  129 (354)
T ss_dssp             --HHHH---HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             --HHHH---HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence              2333   3343 33332 2334456667777777777654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.74  E-value=0.00012  Score=67.94  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh--HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~  115 (274)
                      ..+|||||+|.||+..++.++.. +++++.+.++.....  +...|+.. .+++++++  +.|+|++++|........  
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~--   82 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA--   82 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH--
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH--
Confidence            46899999999999999999876 676665555544332  44566654 48999997  789999999964332222  


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         116 RARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       116 ~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ...+   +.|. +++.- -.-.+-+.++|++..++.|+.+
T Consensus        83 ~~al---~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           83 ISAL---EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             HHHH---HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             HHHH---HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            2333   3343 44442 1234456667777777766643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.74  E-value=6.3e-05  Score=72.73  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh--------------------cC-Ccc-cCHHHHhccc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK--------------------RG-AEH-TNIDDLCKQS   97 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~--------------------~g-~~~-~sl~ell~~a   97 (274)
                      -+-++|+|||+|-+|..+|..+...|.+++++|....+-+...                    .| ..+ .+.++.++.|
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a   98 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT   98 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence            3557999999999999999999999998888876543221111                    11 122 2678889999


Q ss_pred             CEEEEcCCCC------cccHHhcc--HHHHhcC---CCCcEEEEcCCCchhcHHHHH
Q psy3240          98 DFIIITSALT------PDTHHLIN--RARLESM---KPGAILINTSRGQLVDQEALI  143 (274)
Q Consensus        98 DvVil~lPlt------~~T~~li~--~~~l~~m---k~gailINv~RG~iVde~aL~  143 (274)
                      |++++|+|.-      +....+..  +...+.|   .++.++|.-|+..+=-.+.+.
T Consensus        99 d~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~  155 (444)
T 3vtf_A           99 DATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLV  155 (444)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHH
T ss_pred             CceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHH
Confidence            9999999842      12222322  1222334   468899999987664444433

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.72  E-value=8.5e-05  Score=67.83  Aligned_cols=107  Identities=18%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CEEEEEccChHHHHHHHHHc-c-CCCeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLI-P-YKVSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~-~-~G~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      .+|||||+|.||+..++.++ . -+++++.+.++.....   +...|+.  +.+++++++  ++|+|++++|........
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   88 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT   88 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence            58999999999999999987 5 4676555555544322   3445663  348999986  699999999964332222


Q ss_pred             ccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhh-hheee
Q psy3240         114 INRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADI-RVISI  154 (274)
Q Consensus       114 i~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~-~i~~~  154 (274)
                           .+.++.|. +++.- .....-+.++|.+..++. |+.+.
T Consensus        89 -----~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~  127 (346)
T 3cea_A           89 -----IYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ  127 (346)
T ss_dssp             -----HHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred             -----HHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence                 22234554 44431 122334555677776776 66543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.71  E-value=7e-05  Score=68.15  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CEEEEEccChHHH-HHHHHHccC-CCeEEEEeCCCCC-hh--HhhcCCc--ccCHHHHh-cccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCGRIGL-SVLEKLIPY-KVSKFLYTSRSKK-PE--ADKRGAE--HTNIDDLC-KQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~-~iA~~L~~~-G~~vv~~~~r~~~-~~--a~~~g~~--~~sl~ell-~~aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||+|.||+ .+++.++.. +.+++ +.++... ..  +...++.  +.+..+++ .++|+|++++|...... ++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~-~~   80 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST-LA   80 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH-HH
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH-HH
Confidence            4799999999999 499988764 66666 4444432 22  3445665  34555566 67999999999533222 11


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheeeh
Q psy3240         115 NRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       115 ~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       ...   ++.|. +++.- ..-.+-+.+.|.+..++.|+.+..
T Consensus        81 -~~a---l~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v  119 (323)
T 1xea_A           81 -AFF---LHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV  119 (323)
T ss_dssp             -HHH---HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             -HHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence             123   34443 66653 223445666788877777775544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.70  E-value=0.00011  Score=67.80  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=71.0

Q ss_pred             CCCEEEEEccChHHH-HHHHHHccC-CCeEEEEeCCCCC-hh--HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGL-SVLEKLIPY-KVSKFLYTSRSKK-PE--ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~-~iA~~L~~~-G~~vv~~~~r~~~-~~--a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~  112 (274)
                      +-.+|||||+|.||+ .+++.++.. +++++.+.++... ..  +...|+.. .+++|+++  +.|+|++++|.......
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~  105 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEW  105 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHH
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            446899999999999 789988876 6766655444432 22  34557755 48999997  58999999996433222


Q ss_pred             hccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhheee
Q psy3240         113 LINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       113 li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      .  ...++   .|. +++.-- ...+-+.++|++..++.|+.+.
T Consensus       106 ~--~~al~---aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~  144 (350)
T 3rc1_A          106 I--DRALR---AGKHVLAEKPLTTDRPQAERLFAVARERGLLLM  144 (350)
T ss_dssp             H--HHHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             H--HHHHH---CCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            2  23333   332 555432 3345577778887777776443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.69  E-value=5.7e-05  Score=68.24  Aligned_cols=108  Identities=16%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCccc----HH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDT----HH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T----~~  112 (274)
                      .++++.|||.|.+|++++..|...|++.+.+.+|+... +  +...+.... ++.  +.++|+|+.++|..-..    ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            57899999999999999999999998545555555432 2  333343332 222  46899999999975421    11


Q ss_pred             -hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 -LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 -li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                       .+..+.+   +++.+++|+.... .. ..|.+.-+++|+.++|
T Consensus       196 ~~~~~~~l---~~~~~v~DlvY~P-~~-T~ll~~A~~~G~~~i~  234 (271)
T 1npy_A          196 LAFPKAFI---DNASVAFDVVAMP-VE-TPFIRYAQARGKQTIS  234 (271)
T ss_dssp             CSSCHHHH---HHCSEEEECCCSS-SS-CHHHHHHHHTTCEEEC
T ss_pred             CCCCHHHc---CCCCEEEEeecCC-CC-CHHHHHHHHCCCEEEC
Confidence             1343444   5688999998744 22 3777777888888777

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.68  E-value=0.00015  Score=66.12  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      -.+|||||+|.||+..++.++.. +++++.+.++.... .  +...++.  +.+++++++  +.|+|++++|........
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   84 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVA   84 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            35899999999999999998764 45556555544432 2  4455664  358999998  799999999964332222


Q ss_pred             ccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         114 INRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       114 i~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                        ...+   +.|. +++.- -.-.+-+.++|++..++.|+.+
T Consensus        85 --~~al---~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~  121 (329)
T 3evn_A           85 --KAAL---LAGKHVLVEKPFTLTYDQANELFALAESCNLFL  121 (329)
T ss_dssp             --HHHH---HTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred             --HHHH---HCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence              2233   3333 44442 2334456667777777777644

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.64  E-value=7.2e-05  Score=69.08  Aligned_cols=114  Identities=9%  Similarity=0.140  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC----hh--Hhh----cCCc--c---cCH---HHHhcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK----PE--ADK----RGAE--H---TNI---DDLCKQSD   98 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~----~~--a~~----~g~~--~---~sl---~ell~~aD   98 (274)
                      |.+++|+++.|+|.|.+|++++..|...|++.+...+|+.+    .+  +.+    .+..  .   .++   .+.++++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            46789999999999999999999999999954444444422    11  111    1221  1   243   55688999


Q ss_pred             EEEEcCCCCc--ccHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240          99 FIIITSALTP--DTHHLI--NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus        99 vVil~lPlt~--~T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|+.++|..-  .....+  +   .+.++++.+++|+.-...  +..|++.-+++|+..+|
T Consensus       223 iIINaTp~Gm~~~~~~~~~~~---~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~  278 (312)
T 3t4e_A          223 ILTNGTKVGMKPLENESLIGD---VSLLRPELLVTECVYNPH--MTKLLQQAQQAGCKTID  278 (312)
T ss_dssp             EEEECSSTTSTTSTTCCSCCC---GGGSCTTCEEEECCCSSS--SCHHHHHHHHTTCEEEC
T ss_pred             EEEECCcCCCCCCCCCcccCC---HHHcCCCCEEEEeccCCC--CCHHHHHHHHCCCeEEC
Confidence            9999999752  111111  2   234678999999976543  34666667778887766

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.64  E-value=9.8e-05  Score=67.15  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=45.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhhc---------CCcc--cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADKR---------GAEH--TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~~---------g~~~--~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||..+|..|...|  .++++++.+..+..  ....         ....  .++ +.++.||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998777  55666665433222  1111         1222  356 7789999999999964


Q ss_pred             c
Q psy3240         108 P  108 (274)
Q Consensus       108 ~  108 (274)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.64  E-value=8.8e-05  Score=67.79  Aligned_cols=103  Identities=15%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhHh--h---------cC--Ccc-cCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEAD--K---------RG--AEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~--~---------~g--~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      .++|+|||.|.||..+|..|...|. ++++++.+.......  .         ..  +.. .++ +.++.||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988787 777777654322210  0         01  122 356 778999999999942


Q ss_pred             Cc-----------ccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhh
Q psy3240         107 TP-----------DTHHLIN--RARLESMKPGAILINTSRGQLVDQEALIDF  145 (274)
Q Consensus       107 t~-----------~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~  145 (274)
                      ..           .+..++.  .+.+....|++++++++-..-+....+.+.
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~  134 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKV  134 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHh
Confidence            21           1111111  012233357999999986554545555553

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.63  E-value=5.2e-05  Score=69.03  Aligned_cols=96  Identities=18%  Similarity=0.258  Sum_probs=60.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----------CH-HHHhcccCEEEEcCCCCccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----------NI-DDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----------sl-~ell~~aDvVil~lPlt~~T  110 (274)
                      ++|+|||.|.||..+|..|. .|.++.+++++....+ ..+.|....          +. ++....+|+|++++|.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 8987666654432222 333343221          11 34567899999999953 44


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ..++  +.++.+.+++ +|.+.-|=- .++.+.+
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~  110 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKD  110 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHT
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHH
Confidence            4444  3344455666 777765532 2334444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.60  E-value=2e-05  Score=71.13  Aligned_cols=91  Identities=18%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc---c-cCHHHHh-cccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE---H-TNIDDLC-KQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~---~-~sl~ell-~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ++|+|||.|.||..+|..|...|.++.+++++..... ....|..   . .+..+.+ +.+|+|++++|.. .++.++. 
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~-   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP-   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence            6899999999999999999988887777776533221 1122321   1 1334444 7899999999964 4555553 


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q psy3240         117 ARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~  135 (274)
                      +..+.+++++++|.+.-|=
T Consensus        81 ~l~~~l~~~~~iv~~~nGi   99 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGY   99 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSC
T ss_pred             HHHHhhCCCCEEEEeccCc
Confidence            3334467888999887764

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.60  E-value=5.4e-05  Score=68.66  Aligned_cols=107  Identities=13%  Similarity=0.202  Sum_probs=67.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh--HhhcCCc-ccCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKRGAE-HTNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g~~-~~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+.+++.++.. +.+++.+.++.....  ..+. +. +.+++++++  ++|+|++++|.......+  .
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--~   87 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEIT--L   87 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHH--H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHH--H
Confidence            5899999999999999999875 565554444433221  1111 33 348899986  799999999964332211  1


Q ss_pred             HHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +   .++.|. +++.- ..-.+-+.++|.+..++.|+.+..
T Consensus        88 ~---al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~  125 (315)
T 3c1a_A           88 A---AIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWV  125 (315)
T ss_dssp             H---HHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             H---HHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            2   244554 56662 233445667788877777775543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.55  E-value=9.5e-05  Score=75.65  Aligned_cols=100  Identities=22%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh---------------cC---C----cccCHHHHhcccC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK---------------RG---A----EHTNIDDLCKQSD   98 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~---------------~g---~----~~~sl~ell~~aD   98 (274)
                      =++|||||.|.||..+|..+...|+.|+++|....... ..+               ..   .    ...+..+.+++||
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD  395 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVD  395 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCS
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCC
Confidence            37999999999999999999999998888876543211 000               00   0    1122234578999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID  144 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~  144 (274)
                      +|+=++|-.-+.+.-+-++.=+.++++++|- |+|+   +....|.+
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs---l~i~~ia~  439 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA---LNVDDIAS  439 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHHT
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc---CChHHHHh
Confidence            9999999888887766667777789999884 4554   44455555

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.53  E-value=0.00029  Score=67.97  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=69.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCC---eEEEEe----CC----CCCh---h-------HhhcCC--cccCHHHH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYT----SR----SKKP---E-------ADKRGA--EHTNIDDL   93 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~----~r----~~~~---~-------a~~~g~--~~~sl~el   93 (274)
                      |.+++++++.|+|.|..|+++++.|...|+   ++++++    ++    ....   .       +...+.  ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            567899999999999999999999999998   566666    43    1111   1       000111  12368899


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ++.+|+|+.+.|..+   +++.++.++.|+++.++++++.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLyn  297 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLAN  297 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCS
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCC
Confidence            999999999998632   3344567788999999999954

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.51  E-value=0.00034  Score=63.86  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=69.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~  112 (274)
                      .+|||||+|.||+..++.++...   ++++.+.++.....   +...++.  +.+++++++  +.|+|++++|.......
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            48999999999999999998653   45666655554322   4456663  358999997  69999999996433222


Q ss_pred             hccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         113 LINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       113 li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                        -...++   .|. +++.- -.-.+-+.++|++..+++|+.+.
T Consensus        83 --~~~al~---~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~  121 (334)
T 3ohs_X           83 --VMLCLA---AGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM  121 (334)
T ss_dssp             --HHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred             --HHHHHh---cCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence              223333   332 45542 23344566777777777776443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.51  E-value=0.00027  Score=65.62  Aligned_cols=106  Identities=11%  Similarity=0.197  Sum_probs=66.4

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChhHhhc-CCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPEADKR-GAEH-TNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~a~~~-g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+. .++.++.. +++++.+.++......... +... .+++++++  +.|+|++++|........  .
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~--~   85 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA--R   85 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH--H
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH--H
Confidence            58999999999997 77777765 6766666665543322233 3433 48999998  789999999964333222  2


Q ss_pred             HHHhcCCCCcEEEEcC--CCchhcHHHHHhhhhhhhhee
Q psy3240         117 ARLESMKPGAILINTS--RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       117 ~~l~~mk~gailINv~--RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ..   ++.|.-++---  .-.+-+.++|++..++.|+.+
T Consensus        86 ~a---l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  121 (364)
T 3e82_A           86 LA---LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLL  121 (364)
T ss_dssp             HH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             HH---HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            23   33444333322  234456667777777766643

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.50  E-value=0.00046  Score=63.84  Aligned_cols=109  Identities=20%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHc-c-CCCeEEEEeCCCCCh-h--HhhcC--Cc-ccCHHHHhc--ccCEEEEcCCCCcc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLI-P-YKVSKFLYTSRSKKP-E--ADKRG--AE-HTNIDDLCK--QSDFIIITSALTPD  109 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~-~-~G~~vv~~~~r~~~~-~--a~~~g--~~-~~sl~ell~--~aDvVil~lPlt~~  109 (274)
                      ....+|||||+|.||+..++.++ . -+++++.+.++.... .  +...+  .. +.+++++++  +.|+|++++|....
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            34468999999999999999997 4 467666555554433 2  44556  33 348999987  48999999996443


Q ss_pred             cHHhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         110 THHLINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       110 T~~li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ....  ...+   +.|. +++.- -.-.+-+.++|++..++.|+.+
T Consensus       101 ~~~~--~~al---~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  141 (357)
T 3ec7_A          101 ADVA--VAAL---NANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM  141 (357)
T ss_dssp             HHHH--HHHH---HTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred             HHHH--HHHH---HCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence            3222  2333   3343 44432 2334456677888777777643

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.50  E-value=0.00041  Score=63.53  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             CEEEEEccChHHHHHHHHHc-c-CCCeEEEEeCCCCCh-h--HhhcC--Cc-ccCHHHHhcc--cCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLI-P-YKVSKFLYTSRSKKP-E--ADKRG--AE-HTNIDDLCKQ--SDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~-~-~G~~vv~~~~r~~~~-~--a~~~g--~~-~~sl~ell~~--aDvVil~lPlt~~T~~  112 (274)
                      .+|||||+|.||+..++.++ . -+++++.+.++.... .  +...+  .. +.++++++++  .|+|++++|.......
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            48999999999999999998 5 467666555554432 2  34556  33 3489999976  8999999996443322


Q ss_pred             hccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         113 LINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       113 li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      .  ...+   +.|. +++.-- .-.+-+.++|++..++.|+.+
T Consensus        83 ~--~~al---~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           83 V--LKAI---KAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             H--HHHH---HTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             H--HHHH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            2  2333   3443 444322 334456677888777777744

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.49  E-value=0.00049  Score=62.72  Aligned_cols=106  Identities=10%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             CEEEEEccChHHH-HHHHHHccCCCeEEEEeCCCC-Chh--Hhhc-CCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCGRIGL-SVLEKLIPYKVSKFLYTSRSK-KPE--ADKR-GAEH-TNIDDLCK--QSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG~IG~-~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~-g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||+|.+|. .+++.++..+++++.+.++.. +..  +... +... .+++++++  +.|+|++++|........ 
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~-   83 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA-   83 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH-
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH-
Confidence            5899999999996 677777766887665555444 333  3444 3433 48999997  689999999964332222 


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         115 NRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       115 ~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                          ...++.|. +++.- ..-.+-+.++|++..++.|+.+
T Consensus        84 ----~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (336)
T 2p2s_A           84 ----LRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKF  120 (336)
T ss_dssp             ----HHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred             ----HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence                22334454 56653 2334456667777777777644

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.47  E-value=0.00013  Score=66.89  Aligned_cols=90  Identities=24%  Similarity=0.344  Sum_probs=56.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hc------CCc--ccCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KR------GAE--HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~------g~~--~~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+|||.|.||..+|..|...|.  ++++++....+..  ..  ..      ...  ..+ .+.++.||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999987777  7777776533222  11  10      111  124 456789999999999643


Q ss_pred             c---cH--------HhccHH---HHhcCCCCcEEEEcCCC
Q psy3240         109 D---TH--------HLINRA---RLESMKPGAILINTSRG  134 (274)
Q Consensus       109 ~---T~--------~li~~~---~l~~mk~gailINv~RG  134 (274)
                      .   ++        .++ .+   .+....|++++|+++-+
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp  118 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNP  118 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCc
Confidence            2   11        111 12   22222578899887543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.47  E-value=0.00029  Score=57.01  Aligned_cols=89  Identities=8%  Similarity=0.050  Sum_probs=57.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-h-h-H--hhcCCcc-----c---CHHHH-hcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-P-E-A--DKRGAEH-----T---NIDDL-CKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~-~-a--~~~g~~~-----~---sl~el-l~~aDvVil~lPl  106 (274)
                      ..+++.|+|+|.+|+.+++.|...|.++++.+++... . . .  ...++..     .   .+.++ +..+|.|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            3568999999999999999999999988888875321 1 1 1  1223322     1   24444 7889999999987


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEc
Q psy3240         107 TPDTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv  131 (274)
                      .+.+  +.-....+.+.+...+|..
T Consensus        82 d~~n--~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           82 DADN--AFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHH--HHHHHHHHHHTSSSCEEEE
T ss_pred             hHHH--HHHHHHHHHHCCCCEEEEE
Confidence            5433  3323445555444444443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.47  E-value=0.00038  Score=64.22  Aligned_cols=107  Identities=16%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCCh-h--HhhcCC----c-ccCHHHHhc--ccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGA----E-HTNIDDLCK--QSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~----~-~~sl~ell~--~aDvVil~lPlt~~T~  111 (274)
                      .+|||||+|.||+..++.++.. +++++.+.++.... .  +...++    . +.+++++++  ++|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            5899999999999999998865 56655555554432 2  344453    2 348999986  5999999999543222


Q ss_pred             HhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         112 HLINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       112 ~li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                       +    ....++.|. +++.- -.-.+-+.++|.+..++.|+.+.
T Consensus        87 -~----~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           87 -W----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             -H----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             -H----HHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEE
Confidence             1    122345555 44442 12334466788887778787654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.46  E-value=0.00024  Score=67.79  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CCEEEEEccChHHH-HHHHHHccC-CCeEEEEeCCCCCh-h--HhhcCCc------ccCHHHHhc--ccCEEEEcCCCCc
Q psy3240          42 NSTVGIVGCGRIGL-SVLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGAE------HTNIDDLCK--QSDFIIITSALTP  108 (274)
Q Consensus        42 gktVGIIGlG~IG~-~iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~~------~~sl~ell~--~aDvVil~lPlt~  108 (274)
                      -.+|||||+|.||+ .+++.++.. +++++.+.++.... .  +...|+.      +.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988765 56555555554432 2  3445653      348999987  7999999999643


Q ss_pred             ccHHhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         109 DTHHLINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      .....  ...   ++.|. +++.- -.-.+-+.++|.+..++.|+.+.
T Consensus       163 h~~~~--~~a---l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          163 HAEFA--IRA---FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             HHHHH--HHH---HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHH--HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence            32222  223   34444 55542 22334456677777777776554

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.43  E-value=0.00036  Score=63.53  Aligned_cols=103  Identities=19%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChhHhhcCCcc---cCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEH---TNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      -.+|||||+|+||+.+++.++. -+++++...++..... ...|+.+   .++.+. .++|+|++|+|......     .
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~-----~   81 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-PFELQPFRVVSDIEQL-ESVDVALVCSPSREVER-----T   81 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC--------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH-----H
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-HHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHH-----H
Confidence            4589999999999999999986 4666664444443322 2245442   245444 68999999999533222     1


Q ss_pred             HHhcCCCCcEEEEcCC--C-chhcHHHHHhhhhhhhh
Q psy3240         118 RLESMKPGAILINTSR--G-QLVDQEALIDFIADIRV  151 (274)
Q Consensus       118 ~l~~mk~gailINv~R--G-~iVde~aL~~~L~~~~i  151 (274)
                      ....++.|.-+++..-  + ...+.+.|.+..++.|+
T Consensus        82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            2233566777777532  2 22355677777777664

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.43  E-value=0.00057  Score=62.07  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhccHH
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ..+|+|+|+ |+||+..++.++..|++.+...++... .....|+.. .+++|+..  ..|++++++|.. ....++. +
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~~-e   83 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-GTTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSIL-E   83 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TCEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHHH-H
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-cceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHHH-H
Confidence            468999999 999999999998889864433333211 011245543 48999988  899999999953 3444443 2


Q ss_pred             HHhcCCCCcEEEEcCCCc-hhcHHHHHhhhhhhhheeeh
Q psy3240         118 RLESMKPGAILINTSRGQ-LVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~-iVde~aL~~~L~~~~i~~~D  155 (274)
                      .++. ... .+|..+.|- .-+.+.|.+..++.|+.++.
T Consensus        84 a~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~liG  120 (288)
T 2nu8_A           84 AIDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGVRMIG  120 (288)
T ss_dssp             HHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             HHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            3332 222 344455543 33566888888888886653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.43  E-value=0.00036  Score=66.52  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCC-------CChh------HhhcCC--cccCHHHHhcccC
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRS-------KKPE------ADKRGA--EHTNIDDLCKQSD   98 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~-------~~~~------a~~~g~--~~~sl~ell~~aD   98 (274)
                      ..|..+...+|.|+|.|..|..+|+.+.++|. +++++|++-       ....      +.....  ...+|+|+++.+|
T Consensus       181 l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD  260 (398)
T 2a9f_A          181 LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD  260 (398)
T ss_dssp             TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred             HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence            45778999999999999999999999999999 667777642       1000      111111  1237999999999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      +++=+-     ..++++++.++.|+++++++.+|.-..
T Consensus       261 V~IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          261 IFIGVS-----APGVLKAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             SEEECC-----STTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             EEEecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence            988752     248899999999999999999998653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.41  E-value=0.00032  Score=60.06  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=57.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcc-----c---CHHHH-hcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH-----T---NIDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~-----~---sl~el-l~~aDvVil~lPlt~~T~  111 (274)
                      ++|.|+|+|.+|+.+|+.|...|.++++++.+.....  ....+...     .   .+.++ +.++|+|++++|....+ 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN-   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence            4799999999999999999999998888886544332  22334432     1   23443 67899999999875433 


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                       ++-......+.+...+|-..
T Consensus        80 -~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           80 -LFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             -HHHHHHHHHTSCCCEEEECC
T ss_pred             -HHHHHHHHHHcCCCeEEEEE
Confidence             23233444444444454433

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.39  E-value=0.00034  Score=64.18  Aligned_cols=100  Identities=15%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      .+|+|||+|+||+.+++.+... +++.+...++....... .++.. .++++++.++|+|++++|......     ....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~-----~~~~   77 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK-TPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAP   77 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHH-----HHHH
Confidence            4799999999999999999876 56655444333221211 34432 377888888999999998643322     2233


Q ss_pred             cCCCCcEEEEcCCCch--hcH-HHHHhhhhh
Q psy3240         121 SMKPGAILINTSRGQL--VDQ-EALIDFIAD  148 (274)
Q Consensus       121 ~mk~gailINv~RG~i--Vde-~aL~~~L~~  148 (274)
                      .++.|.-+|...-..+  -+. +.|.+..++
T Consensus        78 al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~  108 (320)
T 1f06_A           78 KFAQFACTVDTYDNHRDIPRHRQVMNEAATA  108 (320)
T ss_dssp             HHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEECCCCcCCHHHHHHHHHHHHHh
Confidence            4566776666544332  222 345554443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.38  E-value=0.00084  Score=62.04  Aligned_cols=107  Identities=15%  Similarity=0.216  Sum_probs=67.7

Q ss_pred             CCEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChhHhhc-CCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPEADKR-GAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~a~~~-g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~  115 (274)
                      -.+|||||+|.||+. .+..++.. +++++.+.++.....+... +... .+++++++.  .|+|++++|.......  -
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~--~   82 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEY--A   82 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHH--H
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH--H
Confidence            358999999999997 77777665 6766666665554433334 3433 489999987  8999999996433222  2


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         116 RARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       116 ~~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ...++   .| .+++.-- .-.+-+.++|++..++.|+.+
T Consensus        83 ~~al~---aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (362)
T 3fhl_A           83 GMALE---AGKNVVVEKPFTSTTKQGEELIALAKKKGLML  119 (362)
T ss_dssp             HHHHH---TTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHH---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence            23333   33 3444422 234456667777776666643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.38  E-value=0.00055  Score=63.25  Aligned_cols=92  Identities=17%  Similarity=0.275  Sum_probs=59.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhH--h---h----cC--C--cc-cCHHHHhcccCEEEEcC--
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEA--D---K----RG--A--EH-TNIDDLCKQSDFIIITS--  104 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a--~---~----~g--~--~~-~sl~ell~~aDvVil~l--  104 (274)
                      .++|+|||.|.+|..+|..|...|. +++.+|....+.+.  .   .    .+  .  .. .++++.++.||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4689999999999999999987776 76677665432221  1   0    11  1  12 37888899999999999  


Q ss_pred             CCCccc------HH--------hcc--HHHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPDT------HH--------LIN--RARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~T------~~--------li~--~~~l~~mk~gailINv~R  133 (274)
                      |..+..      +-        ++.  .+.+....|.+++|+++-
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            644322      11        111  012333358899998753

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.37  E-value=0.00035  Score=67.59  Aligned_cols=116  Identities=13%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-------------------HhhcCCcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-------------------ADKRGAEHTN   89 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-------------------a~~~g~~~~s   89 (274)
                      |.+|+|+||.|=|+|++|..+|+.|...|+++++.++....        .+                   +...++.+.+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            56899999999999999999999999999988776543310        00                   1112333333


Q ss_pred             HHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCCCC--cEEEEcCCCchhcHHHHHhhhhhhhheee-hhhcc
Q psy3240          90 IDDLC-KQSDFIIITSALTPDTHHLINRARLESMKPG--AILINTSRGQLVDQEALIDFIADIRVISI-SMVTN  159 (274)
Q Consensus        90 l~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk~g--ailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~~  159 (274)
                      -++++ ..|||.+-|.     +.+.|+.+..++++.+  .++++-+-+.+-.+ | .+.|.++||.++ |.+.|
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl~~PD~~aN  376 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVLFAPGKAAN  376 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCEEECHHHHT
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCEEEChHHhc
Confidence            33333 3699988765     3456888877777643  57888777775433 3 356788888766 55443

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.37  E-value=0.00049  Score=63.16  Aligned_cols=106  Identities=12%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             CEEEEEccChHHHH-HHH-HHcc-CCCeEEEEeCCCCCh-h-H-hhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLS-VLE-KLIP-YKVSKFLYTSRSKKP-E-A-DKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~-~L~~-~G~~vv~~~~r~~~~-~-a-~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~l  113 (274)
                      .+|||||+|.||+. .+. .++. -+++++.+.++.... . . ...++.. .+++++++.  .|+|++++|........
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   82 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence            47999999999996 455 3343 467666555554433 2 2 2234443 489999986  89999999964433222


Q ss_pred             ccHHHHhcCCCCcEEEEcC--CCchhcHHHHHhhhhhhhhee
Q psy3240         114 INRARLESMKPGAILINTS--RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~--RG~iVde~aL~~~L~~~~i~~  153 (274)
                           ...++.|.-++.--  .-.+-+.++|++..++.|+.+
T Consensus        83 -----~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (345)
T 3f4l_A           83 -----KRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV  119 (345)
T ss_dssp             -----HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             -----HHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence                 22344555555432  234456667777777777644

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.36  E-value=0.00044  Score=60.94  Aligned_cols=89  Identities=15%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc--C-HHHHhcccCEEEEcCCCCcccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT--N-IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~--s-l~ell~~aDvVil~lPlt~~T~  111 (274)
                      -+|.|++|.|||.|.+|...++.|...|++++++++......   +...++...  + .++.+..+|+|+.++.. ++. 
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d-~~~-  104 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND-QAV-  104 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC-THH-
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC-HHH-
Confidence            589999999999999999999999999998888876544221   122233322  2 23457789999887543 333 


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                         |.......+ -.++||+.
T Consensus       105 ---N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          105 ---NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             ---HHHHHHHSC-TTCEEEC-
T ss_pred             ---HHHHHHHHh-CCCEEEEe
Confidence               333333345 45778874

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00022  Score=69.11  Aligned_cols=114  Identities=13%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh--HhhcCCcc-----c---CHHHHhcccCEEEEcC
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKRGAEH-----T---NIDDLCKQSDFIIITS  104 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g~~~-----~---sl~ell~~aDvVil~l  104 (274)
                      .+.++.+++|+|+|.|.+|+.+++.|... |.++++++++..+..  +...++..     .   ++.++++.+|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            34678899999999999999999999877 676556655433322  11223321     1   3556788999999999


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      |.... .. +....   +++|..+++++--. -+..++.+..++.|+.+++
T Consensus        97 p~~~~-~~-v~~a~---l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aGv~~i~  141 (467)
T 2axq_A           97 PYTFH-PN-VVKSA---IRTKTDVVTSSYIS-PALRELEPEIVKAGITVMN  141 (467)
T ss_dssp             CGGGH-HH-HHHHH---HHHTCEEEECSCCC-HHHHHHHHHHHHHTCEEEC
T ss_pred             chhhh-HH-HHHHH---HhcCCEEEEeecCC-HHHHHHHHHHHHcCCEEEe
Confidence            96422 11 22222   35677888875411 2356777777777876655

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.34  E-value=0.00019  Score=68.41  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----C---HHHH-hcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----N---IDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----s---l~el-l~~aDvVil~lPlt~~T~  111 (274)
                      +.+|.|+|+|.+|+.+|+.|+..|..+++.+.+..... ....|....     +   |.++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            45799999999999999999999998888887655443 445565321     2   2333 678999999999755444


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                      .++  .....+.|...+|--+
T Consensus        84 ~i~--~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           84 QLT--EMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HHH--HHHHHHCTTCEEEEEE
T ss_pred             HHH--HHHHHhCCCCeEEEEE
Confidence            333  4555566665554433

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.33  E-value=0.00095  Score=61.37  Aligned_cols=105  Identities=14%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChhHhhc-CCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPEADKR-GAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~a~~~-g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+. .++.++.. +++++.+.++......... +... .+++++++.  .|+|++++|........  .
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~--~   85 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA--Q   85 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH--H
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH--H
Confidence            58999999999997 78877765 6766656655443222222 3333 489999976  89999999975443322  2


Q ss_pred             HHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         117 ARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      ..+   +.|. +++.-- .-.+-+.++|++..++.|+.
T Consensus        86 ~al---~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~  120 (352)
T 3kux_A           86 SAL---AAGKHVVVDKPFTVTLSQANALKEHADDAGLL  120 (352)
T ss_dssp             HHH---HTTCEEEECSSCCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHH---HCCCcEEEECCCcCCHHHHHHHHHHHHHcCCe
Confidence            233   3343 454432 23444666777766666653

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.33  E-value=0.00066  Score=62.84  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             CCEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChh---HhhcC-Cc-ccCHHHHhccc--CEEEEcCCCCcccHH
Q psy3240          42 NSTVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPE---ADKRG-AE-HTNIDDLCKQS--DFIIITSALTPDTHH  112 (274)
Q Consensus        42 gktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g-~~-~~sl~ell~~a--DvVil~lPlt~~T~~  112 (274)
                      ..+|||||+|.||+. .++.++.. +++++.+.++.....   +...+ .. +.++++++++.  |+|++++|...... 
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~-   83 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE-   83 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH-
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHH-
Confidence            468999999999995 88888775 676665555544322   23332 33 34899999854  99999999533222 


Q ss_pred             hccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         113 LINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       113 li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                       +-...+   +.|. +++.-- .-.+-+.++|++..++.|+.
T Consensus        84 -~~~~al---~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~  121 (359)
T 3m2t_A           84 -MGLLAM---SKGVNVFVEKPPCATLEELETLIDAARRSDVV  121 (359)
T ss_dssp             -HHHHHH---HTTCEEEECSCSCSSHHHHHHHHHHHHHHTCC
T ss_pred             -HHHHHH---HCCCeEEEECCCcCCHHHHHHHHHHHHHcCCE
Confidence             122333   3343 444421 23444666777777776663

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.32  E-value=0.0011  Score=61.22  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChhHhhc-CCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPEADKR-GAEH-TNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~a~~~-g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+. .++.++.. +++++.+.++.....+... +... .+++++++  +.|+|++++|........  .
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~--~   83 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT--M   83 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH--H
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH--H
Confidence            58999999999997 67878765 6766666665543323333 4433 48999998  689999999975443322  2


Q ss_pred             HHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         117 ARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ..+   +.|. +++.-- .-.+-+.++|++..++.|+.+
T Consensus        84 ~al---~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  119 (358)
T 3gdo_A           84 ACI---QAGKHVVMEKPMTATAEEGETLKRAADEKGVLL  119 (358)
T ss_dssp             HHH---HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             HHH---HcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence            333   3343 444421 233456667777777766643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.30  E-value=0.00042  Score=64.18  Aligned_cols=89  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc----C---HHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT----N---IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|++|.|+|.|.||..+++.++.+|+++++.+.+..+.. +. +.|+..+    +   +.++...+|+|+.++...... 
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~-  265 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL-  265 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHH-
Confidence            789999999999999999999999997777765554443 34 6676432    2   223345689999998754333 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCC
Q psy3240         112 HLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG  134 (274)
                          ...++.|+++..+|+++..
T Consensus       266 ----~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          266 ----LPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ----HHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHhcCCEEEEEccC
Confidence                3556778999999999863

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.27  E-value=0.0015  Score=60.00  Aligned_cols=106  Identities=13%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             CEEEEEccChHHH-HHHHHHccC-CCeEEEEeCCCCChh-Hhh---cCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGL-SVLEKLIPY-KVSKFLYTSRSKKPE-ADK---RGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~-~iA~~L~~~-G~~vv~~~~r~~~~~-a~~---~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~l  113 (274)
                      .+|||||+|.||+ ..+..++.. +++++.+.++..... +..   .++.. .+++++++.  .|+|++++|........
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDLA   82 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHHH
Confidence            4899999999999 577777665 676665655553333 333   34443 489999986  89999999964332222


Q ss_pred             ccHHHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         114 INRARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       114 i~~~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                        ...+   +.| .+++.-- .-.+-+.++|++..++.|+.+
T Consensus        83 --~~al---~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (349)
T 3i23_A           83 --KQAI---LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV  119 (349)
T ss_dssp             --HHHH---HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             --HHHH---HcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence              2333   334 3444422 233456667777777766644

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00038  Score=66.18  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             EEEEEccChHHHHHHHHHccCC--------CeEEEEeCCCCC--h-hHh---h--c------CC------cc-cCHHHHh
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYK--------VSKFLYTSRSKK--P-EAD---K--R------GA------EH-TNIDDLC   94 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G--------~~vv~~~~r~~~--~-~a~---~--~------g~------~~-~sl~ell   94 (274)
                      ||+|||.|..|.++|..|...|        .++..|.++...  . ...   .  .      ++      .. .++++++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999997544        235555443221  0 000   0  0      11      12 2789999


Q ss_pred             cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240          95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      +.||+|++++|. ...+.++ ++..+.++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999994 5555555 34556778999999998774

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.25  E-value=0.00065  Score=63.04  Aligned_cols=105  Identities=17%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-----cc---cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-----EH---TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-----~~---~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      +.++|+|+|.|.+|+.+|+.|+.. .++.+++....+.+.....+     ..   .++.++++++|+|+.++|..- ...
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~-~~~   92 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL-GFK   92 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG-HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc-cch
Confidence            345799999999999999999764 45666665433322111111     11   246778999999999999642 111


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                       +-+..   ++.|.-++|++ ...-...+|.+..++.|+.
T Consensus        93 -v~~~~---~~~g~~yvD~s-~~~~~~~~l~~~a~~~g~~  127 (365)
T 3abi_A           93 -SIKAA---IKSKVDMVDVS-FMPENPLELRDEAEKAQVT  127 (365)
T ss_dssp             -HHHHH---HHHTCEEEECC-CCSSCGGGGHHHHHHTTCE
T ss_pred             -HHHHH---HhcCcceEeee-ccchhhhhhhhhhccCCce
Confidence             22222   35677888876 3333444555555555553

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.21  E-value=0.00043  Score=63.05  Aligned_cols=109  Identities=16%  Similarity=0.217  Sum_probs=62.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--cC------Cccc-CHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--RG------AEHT-NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~g------~~~~-sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|+|||.|.||..+|..|...|.  +++.+|....+..  ...  ..      .... +..+.++.||+|+++++....
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~   80 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK   80 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            489999999999999999988887  7777776543222  111  11      1111 223578899999999954321


Q ss_pred             -----------cHHhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 -----------THHLINR--ARLESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 -----------T~~li~~--~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                                 +..++..  +.+....|++++|+++-..-+....+.+.....++
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rv  135 (304)
T 2v6b_A           81 PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPV  135 (304)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCE
T ss_pred             CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcE
Confidence                       1112110  22333368999999754433333444444433344

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.21  E-value=0.0008  Score=62.08  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=45.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhH--hh-------c--C--Ccc-cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEA--DK-------R--G--AEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a--~~-------~--g--~~~-~sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||.|.||..+|..+...|. +++.+|......+.  ..       .  .  +.. .++ +.++.||+|+++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            699999999999999999988887 77777765432221  00       0  1  122 356 78899999999983

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.21  E-value=0.00076  Score=61.75  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+..+  +.+++.+..|+|+-++.....     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            589999999999999999999999997766666555555 677787543  334444478999998875422     235


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q psy3240         118 RLESMKPGAILINTSRGQ  135 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~  135 (274)
                      .++.++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            677899999999997543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.20  E-value=0.0016  Score=62.80  Aligned_cols=110  Identities=15%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh-----HhhcC-------CcccCHHHHhc-
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE-----ADKRG-------AEHTNIDDLCK-   95 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~-----a~~~g-------~~~~sl~ell~-   95 (274)
                      |.+++|++|.|.|+|++|+.+|+.|...|++++...++..        ...     ....+       .+..+.++++. 
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            5689999999999999999999999999998875655431        111     11111       23345667664 


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      .||+++-|...     +.++.+....++ -.+++-.+-+.+- .+ ..+.|.++|+.++
T Consensus       310 ~~DIlvPcA~~-----n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~~~  360 (440)
T 3aog_A          310 PVEFLVPAALE-----KQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVLVV  360 (440)
T ss_dssp             CCSEEEECSSS-----SCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCEEE
T ss_pred             CCcEEEecCCc-----CccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCEEE
Confidence            69999998763     345566666663 5677777777754 33 3456778887655

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.20  E-value=0.0012  Score=56.38  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=50.3

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC-cc------cCHHHHhcccCEEEEcCCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA-EH------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~-~~------~sl~ell~~aDvVil~lPlt  107 (274)
                      ..+.||+|.|.|. |.||+.+++.|...|.++++.+++..+.. ....++ ..      .++.+.+..+|+|+.+....
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            5799999999997 99999999999999998877776654433 223344 32      24567888999999988754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.18  E-value=0.00076  Score=62.79  Aligned_cols=69  Identities=22%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc----CCcccC---HHHHhcccCEEEEc
Q psy3240          35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR----GAEHTN---IDDLCKQSDFIIIT  103 (274)
Q Consensus        35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~----g~~~~s---l~ell~~aDvVil~  103 (274)
                      |...-+.||+|+|||.|.+|+.+++.++.+|++++++++....+.....    -..+.+   +.++++++|+|+..
T Consensus         7 m~~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A            7 MTRIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCCCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             ccccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            4456689999999999999999999999999988888765433221100    011223   66788899998653

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.18  E-value=0.0016  Score=58.55  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      -+.++|+++|+|+||+.+++.  . +++.+.++.  .+..  +.|+.. .+++++++++|+|+=|.+. +    -+.+..
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~g--elgv~a~~d~d~lla~pD~VVe~A~~-~----av~e~~   77 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISK--DIPGVVRLDEFQVPSDVSTVVECASP-E----AVKEYS   77 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCC--CCSSSEECSSCCCCTTCCEEEECSCH-H----HHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cccc--ccCceeeCCHHHHhhCCCEEEECCCH-H----HHHHHH
Confidence            456899999999999999998  4 777666655  2221  225544 3799998899999998743 1    233335


Q ss_pred             HhcCCCCcEEEEcCCCchhcHH
Q psy3240         119 LESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~  140 (274)
                      .+.|+.|.-+|-+|-|.+.|.+
T Consensus        78 ~~iL~aG~dvv~~S~gaLad~~   99 (253)
T 1j5p_A           78 LQILKNPVNYIIISTSAFADEV   99 (253)
T ss_dssp             HHHTTSSSEEEECCGGGGGSHH
T ss_pred             HHHHHCCCCEEEcChhhhcCHH
Confidence            5668899999999999888864

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.17  E-value=0.0011  Score=61.83  Aligned_cols=106  Identities=12%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             CEEEEEccC-hHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGCG-RIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGlG-~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||+| .||+..++.++.. +++++.+.++.....   +.+.|+.. .+++|++++  .|+|++++|......  +
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~--~   80 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCE--H   80 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHH--H
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHH--H
Confidence            489999999 9999999998765 566665555544322   44557754 489999975  999999999643322  2


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         115 NRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       115 ~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      -...++   .|. +++.- -.-.+-+.++|++..++.|+.+
T Consensus        81 ~~~al~---aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  118 (387)
T 3moi_A           81 VVQASE---QGLHIIVEKPLTLSRDEADRMIEAVERAGVHL  118 (387)
T ss_dssp             HHHHHH---TTCEEEECSCCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHH---CCCceeeeCCccCCHHHHHHHHHHHHHhCCeE
Confidence            223333   333 34332 1234456667777777766643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.15  E-value=0.001  Score=61.32  Aligned_cols=61  Identities=20%  Similarity=0.305  Sum_probs=44.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh--h-----c--CC--cc-cCHHHHhcccCEEEEcC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD--K-----R--GA--EH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~--~-----~--g~--~~-~sl~ell~~aDvVil~l  104 (274)
                      ++|+|||.|.||..+|..|...|. +++.+|....+.+  ..  .     .  ..  .. .++ +.++.||+|++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            689999999999999999988787 7666765543222  10  1     1  11  12 366 7889999999998

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.14  E-value=0.00076  Score=64.72  Aligned_cols=111  Identities=12%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-------------C-hh---H-hhcC-------CcccCH
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-------------K-PE---A-DKRG-------AEHTNI   90 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-------------~-~~---a-~~~g-------~~~~sl   90 (274)
                      .|.+|+|++|.|.|+|++|+.+|+.|...|++++...+...             . ..   . ...+       .+..+.
T Consensus       206 ~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~  285 (421)
T 2yfq_A          206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITD  285 (421)
T ss_dssp             TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCc
Confidence            35689999999999999999999999999998875555441             0 11   1 1111       122233


Q ss_pred             HHHhc-ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          91 DDLCK-QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        91 ~ell~-~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ++++. .||+++-|.+.     +.|+.+....+ ...+++-.+-+.+. .+ ..+.|.++|+.++
T Consensus       286 ~~~~~~~~DIliP~A~~-----n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~~~  342 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAALE-----NVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGINLT  342 (421)
T ss_dssp             ---------CEEECSCS-----SCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCEEE
T ss_pred             cchhcCCccEEEEcCCc-----CcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCEEE
Confidence            44443 69999988653     44777777777 46777777777764 33 3455777787655

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.14  E-value=0.0038  Score=59.76  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=75.8

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCC--------Chh----H-hhcC-------CcccCHHHHh
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSK--------KPE----A-DKRG-------AEHTNIDDLC   94 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~--------~~~----a-~~~g-------~~~~sl~ell   94 (274)
                      .|.+++|++|.|.|+|++|+.+|+.|.. .|++++...+...        ...    . ...+       .+..+.++++
T Consensus       203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil  282 (415)
T 2tmg_A          203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  282 (415)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred             cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence            4678999999999999999999999998 9998875655431        111    1 1111       2333566766


Q ss_pred             c-ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          95 K-QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        95 ~-~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      . .||+++-|...     +.++.+..+.++ -.+++-.+-+.+- .+ -.+.|.++|+.++
T Consensus       283 ~~~~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~t-~~-a~~~l~~~Gi~~~  335 (415)
T 2tmg_A          283 ELDVDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPTT-PE-ADEILSRRGILVV  335 (415)
T ss_dssp             TCSCSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCBC-HH-HHHHHHHTTCEEE
T ss_pred             cCCCcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCcccC-HH-HHHHHHHCCCEEE
Confidence            4 79999998764     346777777774 5577777777653 33 3355777777654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.13  E-value=0.0014  Score=59.53  Aligned_cols=109  Identities=15%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhccHH
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .++|+|+|+ |++|+.+++.++..|++.+...++.. ......|... .+++|+.+  ..|++++++|. +.+..++.+ 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~-~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~e-   83 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGK-GGMEVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAALE-   83 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTC-TTCEETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCC-CCceECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHHH-
Confidence            478999998 99999999999988996442333322 1111245544 38999988  89999999995 344444432 


Q ss_pred             HHhcCCCCcEEEEcCCCc-hhcHHHHHhhhhhhhheeeh
Q psy3240         118 RLESMKPGAILINTSRGQ-LVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~-iVde~aL~~~L~~~~i~~~D  155 (274)
                      ..+. +-. .+|..+.|= ..+++.+.+..++.++.++.
T Consensus        84 a~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~vig  120 (288)
T 1oi7_A           84 AAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (288)
T ss_dssp             HHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            2222 222 244455553 23567888888888886663

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.12  E-value=0.00095  Score=60.88  Aligned_cols=63  Identities=21%  Similarity=0.348  Sum_probs=45.1

Q ss_pred             CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCChhHh----hc-------C--Ccc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEAD----KR-------G--AEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~~a~----~~-------g--~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|||.|.||..+|..|..  +|.++++++....+.+..    ..       .  +.. .++++ ++.||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            489999999999999999976  577777777654433211    11       1  112 35666 8999999999984

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.10  E-value=0.0011  Score=60.86  Aligned_cols=70  Identities=16%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccC--------CCeEEEEeCCCCC-hh--HhhcCCc--ccCHHHHhc--ccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPY--------KVSKFLYTSRSKK-PE--ADKRGAE--HTNIDDLCK--QSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~--------G~~vv~~~~r~~~-~~--a~~~g~~--~~sl~ell~--~aDvVil~  103 (274)
                      ..+--+|||||+|.||+.-++.++..        +++++.+.++... .+  +.+.++.  +.+++|+++  +.|+|+++
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia  101 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT  101 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence            34456899999999999877776542        5666666555443 33  5566774  348999996  47999999


Q ss_pred             CCCCc
Q psy3240         104 SALTP  108 (274)
Q Consensus       104 lPlt~  108 (274)
                      +|..-
T Consensus       102 tP~~~  106 (393)
T 4fb5_A          102 TPNQF  106 (393)
T ss_dssp             SCGGG
T ss_pred             CChHH
Confidence            99643

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.07  E-value=0.00066  Score=62.03  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      .+|||||+|.||+. .+..++.. +++++.+.++.....   +.+.|+.  +.+++|+++  +.|+|++++|..-...  
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~--  101 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIE--  101 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHH--
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHH--
Confidence            48999999999986 56677654 676666666554322   4566774  359999985  4799999999633222  


Q ss_pred             ccHHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhh
Q psy3240         114 INRARLESMKPGAILINTS-RGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i  151 (274)
                      +-...++.=|  .+++-=- --.+-+.++|++..++.|+
T Consensus       102 ~~~~al~aGk--hVl~EKPla~~~~ea~~l~~~a~~~~~  138 (350)
T 4had_A          102 WSIKAADAGK--HVVCEKPLALKAGDIDAVIAARDRNKV  138 (350)
T ss_dssp             HHHHHHHTTC--EEEECSCCCSSGGGGHHHHHHHHHHTC
T ss_pred             HHHHHHhcCC--EEEEeCCcccchhhHHHHHHHHHHcCC
Confidence            2233333221  2333311 1223455566665555554

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.07  E-value=0.00049  Score=63.10  Aligned_cols=97  Identities=16%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChhHhhc----C-------Ccc-cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADKR----G-------AEH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~~----g-------~~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      -++|+|||.|.||.++|..++..|.  +++.+|....+......    .       ... .+..+.++.||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999976553  56677655332211110    0       111 13456789999999998754


Q ss_pred             ccc-----------HHhcc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         108 PDT-----------HHLIN--RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       108 ~~T-----------~~li~--~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ..-           ..++.  .+.+....|++++++++-  ++|.-
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~  129 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDIL  129 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHH
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHH
Confidence            311           01111  012333358889999753  55443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.07  E-value=0.00046  Score=60.43  Aligned_cols=65  Identities=14%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             CCEEEEEccChHHHHHHHH--HccCCCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEK--LIPYKVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~--L~~~G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPl  106 (274)
                      .++|+|||+|++|+.+|+.  ....|++++++.++.+... ....++.   ..++++++++.|+|++++|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            3579999999999999994  3456787776655444332 2122322   23788988777999999996

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.05  E-value=0.0015  Score=58.05  Aligned_cols=81  Identities=15%  Similarity=0.057  Sum_probs=52.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      .+|+|+|+|+||+.+++.+...+-+.+...++....   ..++... ++++++ ++|+|+-..+. ..+.     +.+. 
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~---~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~-   72 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA---TTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD-   72 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-----CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT-
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc---cCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH-
Confidence            689999999999999999987765555545544332   3455443 788888 99998843321 1222     2333 


Q ss_pred             CCCCcEEEEcCCC
Q psy3240         122 MKPGAILINTSRG  134 (274)
Q Consensus       122 mk~gailINv~RG  134 (274)
                      ++.|.-+|-...|
T Consensus        73 l~~g~~vVigTTG   85 (243)
T 3qy9_A           73 EDFHLPLVVATTG   85 (243)
T ss_dssp             SCCCCCEEECCCS
T ss_pred             HhcCCceEeCCCC
Confidence            6777666655555

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.05  E-value=0.00045  Score=63.82  Aligned_cols=91  Identities=16%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC---CChh-HhhcCCccc---CHHHHh----cccCEEEEcCCCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS---KKPE-ADKRGAEHT---NIDDLC----KQSDFIIITSALT  107 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~---~~~~-a~~~g~~~~---sl~ell----~~aDvVil~lPlt  107 (274)
                      .+.|++|.|+|.|.||..+++.++.+|+++++.+.+.   .+.+ +.+.|+..+   ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5779999999999999999999999999777766554   3333 455666432   111222    3589999988753


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...   + ...++.|+++..+|+++.
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            322   1 456778899999999875

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.05  E-value=0.0015  Score=59.85  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=74.2

Q ss_pred             CCCCCEEEEE-cc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240          39 ALQNSTVGIV-GC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCK--QSDFIIITSALTPDTHHL  113 (274)
Q Consensus        39 ~L~gktVGII-Gl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~--~aDvVil~lPlt~~T~~l  113 (274)
                      -+..++++|| |+ |++|+.+++.++..|++ +++.-++.+....-.|.... +++|+.+  ..|++++++|. +....+
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~   87 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAA   87 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHH
Confidence            4667889999 99 99999999999999997 44332222111112455543 8999988  89999999995 334444


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhh-hheeeh
Q psy3240         114 INRARLESMKPGAILINTSRGQL-VDQEALIDFIADI-RVISIS  155 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~-~i~~~D  155 (274)
                      +.+ ..+. .- ..+|+.+.|-. -++..+.+..++. |+..+.
T Consensus        88 ~~e-~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG  128 (305)
T 2fp4_A           88 INE-AIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG  128 (305)
T ss_dssp             HHH-HHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred             HHH-HHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence            433 2221 21 24566776643 3556888988888 887664

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.05  E-value=0.0011  Score=63.68  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H---h-hcC------CcccCHHHHh-cc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A---D-KRG------AEHTNIDDLC-KQ   96 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a---~-~~g------~~~~sl~ell-~~   96 (274)
                      |.+|+|+||.|-|+|++|+.+|+.|...|++++...+....        .. .   . +.+      .+..+.++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            67899999999999999999999999999987766555421        11 1   1 112      2334566655 46


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ||+++-|...     +.|+.+..+.++ -.+++-.+-+.+- .+ ..+.|.++||.++
T Consensus       296 ~DIliPcA~~-----n~I~~~~a~~l~-ak~V~EgAN~p~t-~e-A~~iL~~rGI~~~  345 (424)
T 3k92_A          296 CDILVPAAIS-----NQITAKNAHNIQ-ASIVVERANGPTT-ID-ATKILNERGVLLV  345 (424)
T ss_dssp             CSEEEECSCS-----SCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHTTCEEE
T ss_pred             ccEEeecCcc-----cccChhhHhhcC-ceEEEcCCCCCCC-HH-HHHHHHHCCCEEE
Confidence            9999887653     457777677773 5677777777753 33 3466777777544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.04  E-value=0.0011  Score=57.10  Aligned_cols=88  Identities=14%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----C---HHHH-hcccCEEEEcCCCCccc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----N---IDDL-CKQSDFIIITSALTPDT  110 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----s---l~el-l~~aDvVil~lPlt~~T  110 (274)
                      ..+++.|+|+|.+|+.+|+.|...|. +++.+++..... .. .++...     +   ++++ +.++|.|++++|.... 
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-   84 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE-   84 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH-
Confidence            35689999999999999999999898 777765443322 22 444321     2   3333 6789999999986433 


Q ss_pred             HHhccHHHHhcCCCC-cEEEEcC
Q psy3240         111 HHLINRARLESMKPG-AILINTS  132 (274)
Q Consensus       111 ~~li~~~~l~~mk~g-ailINv~  132 (274)
                       ++.-....+.+.++ .+++.+.
T Consensus        85 -n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           85 -TIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             -HHHHHHHHHHHCSSSEEEEECS
T ss_pred             -HHHHHHHHHHHCCCCeEEEEEC
Confidence             33334455666777 4555443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.04  E-value=0.00034  Score=62.05  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~   75 (274)
                      ..|++++|.|||+|.+|..+|+.|...|.. .+++|+..
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            468999999999999999999999998974 45555544

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.03  E-value=0.0028  Score=57.08  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=68.8

Q ss_pred             CEEEEEccChHHHHHHHHHcc----CCCeEEEEeCCCCChhHhhcCCcccCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP----YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCK--QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~----~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.||+..++.+..    -+++++...++...  +...++.+.+++|+++  +.|+|++++|......  +-.
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~--a~~~g~~~~~~~ell~~~~vD~V~i~tp~~~H~~--~~~   83 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL--GSLDEVRQISLEDALRSQEIDVAYICSESSSHED--YIR   83 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC--CEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH--HHH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH--HHHcCCCCCCHHHHhcCCCCCEEEEeCCcHhHHH--HHH
Confidence            589999999999999998865    35655655554322  2234555568999986  6899999999643322  222


Q ss_pred             HHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         117 ARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       117 ~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ..+   +.|. +++.- -.-.+-+.++|++..+++|+.+.
T Consensus        84 ~al---~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~  120 (294)
T 1lc0_A           84 QFL---QAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLH  120 (294)
T ss_dssp             HHH---HTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHH---HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            344   3444 66663 22344566788887777777644

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.03  E-value=0.00086  Score=60.56  Aligned_cols=95  Identities=15%  Similarity=0.343  Sum_probs=57.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hcCC------cc--cCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KRGA------EH--TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~g~------~~--~sl~ell~~aDvVil~lPl  106 (274)
                      ..++|+|||.|.||..+|..|...|.  ++++++.+.....  +.  ..+.      ..  .+-.+.++.||+|+++++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   85 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence            34799999999999999999988887  7777765432221  11  1111      11  1123567899999999964


Q ss_pred             Ccc---cH--------Hhcc--HHHHhcCCCCcEEEEcCCCc
Q psy3240         107 TPD---TH--------HLIN--RARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       107 t~~---T~--------~li~--~~~l~~mk~gailINv~RG~  135 (274)
                      ...   ++        .++.  .+.+....+++++|+++-|-
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            321   11        1110  11222236889999986543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.03  E-value=0.00093  Score=64.27  Aligned_cols=109  Identities=12%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC-Cc-----cc---CHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG-AE-----HT---NIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g-~~-----~~---sl~ell~~aDvVil~lPlt~~  109 (274)
                      .+++|+|+|.|.||+.+|+.|...|.++++++++..+..  +...+ +.     ..   ++.++++.+|+|+.++|....
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence            478999999999999999999999987666665433222  11111 11     11   355778899999999986432


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .  -+....+   ++|..+++.+.-. -....+.+..++.|+.+++
T Consensus        82 ~--~i~~a~l---~~g~~vvd~~~~~-~~~~~l~~aA~~aGv~~i~  121 (450)
T 1ff9_A           82 A--TVIKSAI---RQKKHVVTTSYVS-PAMMELDQAAKDAGITVMN  121 (450)
T ss_dssp             H--HHHHHHH---HHTCEEEESSCCC-HHHHHTHHHHHHTTCEEEC
T ss_pred             h--HHHHHHH---hCCCeEEEeeccc-HHHHHHHHHHHHCCCeEEe
Confidence            1  1222223   4456666664211 1245666666666766554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.02  E-value=0.00066  Score=64.73  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCc----ccCHHHHhc--ccCEEEEcCCC
Q psy3240          42 NSTVGIVGC----GRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAE----HTNIDDLCK--QSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGl----G~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~----~~sl~ell~--~aDvVil~lPl  106 (274)
                      -.+|||||+    |.||+..++.++..  +++++.+.++.....   +...|+.    +.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999876  676666655554322   3455664    348999996  58999999995


Q ss_pred             CcccHHhccHHHHhcCCCC-------cEEEEc-CCCchhcHHHHHhhhhhhhheee
Q psy3240         107 TPDTHHLINRARLESMKPG-------AILINT-SRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~g-------ailINv-~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      .......  ...+   +.|       .+++.- -.-.+-+.++|++..++.|+.+.
T Consensus       100 ~~H~~~~--~~al---~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~  150 (438)
T 3btv_A          100 ASHYEVV--MPLL---EFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI  150 (438)
T ss_dssp             HHHHHHH--HHHH---HHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHH--HHHH---HCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence            4332222  1223   333       567762 22344566778877777776544

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.01  E-value=0.0031  Score=60.27  Aligned_cols=114  Identities=11%  Similarity=0.154  Sum_probs=74.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--hh---HhhcCCccc---CHHHHhcc-cCEEEEcCCCCc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--PE---ADKRGAEHT---NIDDLCKQ-SDFIIITSALTP  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--~~---a~~~g~~~~---sl~ell~~-aDvVil~lPlt~  108 (274)
                      .++.||+|.|||+|..|.++|+.|+..|+++.++|.+...  +.   ..+.|+...   ..++++.. +|+|++.--..+
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~   84 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPY   84 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCT
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCC
Confidence            4688999999999999999999999999988888875421  11   345677542   34456676 899988533322


Q ss_pred             ccHH----------hccH-HHHhcCCCCcEE-EEcCCCchhcHHHHHhhhhhhhh
Q psy3240         109 DTHH----------LINR-ARLESMKPGAIL-INTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       109 ~T~~----------li~~-~~l~~mk~gail-INv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ....          ++.+ +.+..+.+..++ |--+.|+.-...-+...|+..|.
T Consensus        85 ~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           85 NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             TSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             CChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            2211          2222 334333334444 33445887777777777877664

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.99  E-value=0.0013  Score=63.76  Aligned_cols=104  Identities=10%  Similarity=0.167  Sum_probs=69.4

Q ss_pred             CCEEEEEcc----ChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCc----ccCHHHHhc--ccCEEEEcCCC
Q psy3240          42 NSTVGIVGC----GRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAE----HTNIDDLCK--QSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGl----G~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~----~~sl~ell~--~aDvVil~lPl  106 (274)
                      -.+|||||+    |.||+..++.|+..  +++++.+.++.....   +...|+.    +.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999    99999999999876  676665655554322   3455664    348999996  68999999995


Q ss_pred             CcccHHhccHHHHhcCCCC-------cEEEEc-CCCchhcHHHHHhhhhhhh
Q psy3240         107 TPDTHHLINRARLESMKPG-------AILINT-SRGQLVDQEALIDFIADIR  150 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~g-------ailINv-~RG~iVde~aL~~~L~~~~  150 (274)
                      .......  ...+   +.|       .+++.- -.-.+-+.++|++..++.|
T Consensus       119 ~~H~~~~--~~al---~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          119 PEHYEVV--KNIL---EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             HHHHHHH--HHHH---HHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             HHHHHHH--HHHH---HCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            3332222  2233   334       477774 2234456677888777777

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.92  E-value=0.0025  Score=59.21  Aligned_cols=86  Identities=22%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCccc------------------CHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAEHT------------------NIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~~~------------------sl~ell~~aDvV  100 (274)
                      .+|||+|+|.||+.+++.|... +++++...++.....   +...++...                  ++++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999999754 566666666543322   222233211                  334556689999


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.|+|.... .... ...   ++.|+.+|+.|.
T Consensus        82 ~~aTp~~~s-~~~a-~~~---~~aG~kvV~~sa  109 (340)
T 1b7g_O           82 VDTTPNGVG-AQYK-PIY---LQLQRNAIFQGG  109 (340)
T ss_dssp             EECCSTTHH-HHHH-HHH---HHTTCEEEECTT
T ss_pred             EECCCCchh-HHHH-HHH---HHcCCeEEEeCC
Confidence            999985322 2111 222   245666666653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.91  E-value=0.0014  Score=60.41  Aligned_cols=96  Identities=23%  Similarity=0.312  Sum_probs=60.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--h-------cCCcc--cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--K-------RGAEH--TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~-------~g~~~--~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||.++|..+...|.  +++.+|....+..  +.  .       .....  .+..+.++.||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999876665  6777776554322  11  0       11221  25578899999999998643


Q ss_pred             cc---cH-Hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         108 PD---TH-HLI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       108 ~~---T~-~li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ..   +| .++  |.       +.+....|++++++++  .++|.-
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  124 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVM  124 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHH
Confidence            21   11 111  11       2344557899999998  445443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.91  E-value=0.0016  Score=59.98  Aligned_cols=89  Identities=26%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------CHHHHh-cccCEEEEcCCC--Ccc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------NIDDLC-KQSDFIIITSAL--TPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------sl~ell-~~aDvVil~lPl--t~~  109 (274)
                      .|++|.|+|.|.+|..+++.++.+|+++++.+.+..+.+ +++.|+..+       ++.+.+ ...|+|+.++..  .+.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  258 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  258 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence            589999999999999999999999998777776555555 666776532       222223 368999999875  222


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         110 THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      .     ...++.++++..++.++..
T Consensus       259 ~-----~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          259 F-----NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             T-----TTGGGGEEEEEEEEECCCC
T ss_pred             H-----HHHHHHhcCCCEEEEecCC
Confidence            2     2456678899999998754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.89  E-value=0.0015  Score=60.67  Aligned_cols=89  Identities=22%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----C---HHHHhcccCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~~  112 (274)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +.+.|+..+    +   .+++....|+|+-++......  
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~--  271 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL--  271 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCH--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHH--
Confidence            589999999999999999999999998666665555444 566776532    2   122334689999988753222  


Q ss_pred             hccHHHHhcCCCCcEEEEcCCC
Q psy3240         113 LINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG  134 (274)
                         ...++.++++..++.++..
T Consensus       272 ---~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          272 ---DDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             ---HHHHTTEEEEEEEEECCCC
T ss_pred             ---HHHHHHhccCCEEEEeccC
Confidence               3567788999999998753

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.87  E-value=0.0037  Score=57.55  Aligned_cols=98  Identities=21%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc-------
Q psy3240          39 ALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP-------  108 (274)
Q Consensus        39 ~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~-------  108 (274)
                      .+.|++|+++|=|   ++..+++..+..+|+++.+..+..-.+.....| ...+++|+++.+|+|..-.--.+       
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~~  222 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAVS  222 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSCC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcC-ccCCHHHHhCCCCEEEeccchhhccccchh
Confidence            5899999999964   799999999999999766665543222211223 34589999999999998532111       


Q ss_pred             --c--cHHhccHHHHhcCCCCcEEEEcC---CCchh
Q psy3240         109 --D--THHLINRARLESMKPGAILINTS---RGQLV  137 (274)
Q Consensus       109 --~--T~~li~~~~l~~mk~gailINv~---RG~iV  137 (274)
                        +  ...-++.+.++.+|++++|.-+.   ||.=|
T Consensus       223 ~~~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI  258 (304)
T 3r7f_A          223 QEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEI  258 (304)
T ss_dssp             STTHHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTB
T ss_pred             HHHHhCCCccCHHHHhhcCCCCEEECCCCCCCCcee
Confidence              1  12347899999999999999886   55433

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.84  E-value=0.0041  Score=57.33  Aligned_cols=101  Identities=13%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCc--c-cCHHHHhcccCEEEEcC----CC
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAE--H-TNIDDLCKQSDFIIITS----AL  106 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~--~-~sl~ell~~aDvVil~l----Pl  106 (274)
                      .+.|++|++|| .+++..+.+..+..+|+++.+..+..-.+.    +.+.|..  . .+++|+++.+|+|..-+    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            58999999999 578999999999999997766665432221    1122332  2 38999999999999854    00


Q ss_pred             ---Cc---c--cHHhccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         107 ---TP---D--THHLINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       107 ---t~---~--T~~li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                         .+   +  ...-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~  274 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTA  274 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCH
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecH
Confidence               00   0  12447999999999999999986   5654443

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.84  E-value=0.0023  Score=59.05  Aligned_cols=65  Identities=25%  Similarity=0.287  Sum_probs=46.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCC------------------cc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGA------------------EH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~------------------~~-~sl~ell~~aDv   99 (274)
                      .+|||+|+|.||+.+++.+... +++++...++.....   +...|+                  .. .++++++..+|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999999764 455555554443322   223332                  11 378888889999


Q ss_pred             EEEcCCCC
Q psy3240         100 IIITSALT  107 (274)
Q Consensus       100 Vil~lPlt  107 (274)
                      |+.|+|..
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999964

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.0039  Score=57.73  Aligned_cols=106  Identities=8%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             CCCEEEEEccChHHH-HHHHHHccCCCeEEEEeCCCCChh---HhhcCC-c-ccCHHHHhcc--cCEEEEcCCCCcccHH
Q psy3240          41 QNSTVGIVGCGRIGL-SVLEKLIPYKVSKFLYTSRSKKPE---ADKRGA-E-HTNIDDLCKQ--SDFIIITSALTPDTHH  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~-~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~-~-~~sl~ell~~--aDvVil~lPlt~~T~~  112 (274)
                      +-.+|||||+|.+|. .++..++.-+++++.+.++.....   +.+.+. . +.+++++++.  .|+|++++|...... 
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~-  103 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE-  103 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH-
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH-
Confidence            346899999999995 567777777887776666654332   445553 3 3599999975  899999999533222 


Q ss_pred             hccHHHHhcCCCC-cEEEEc-CCCchhcHHHHHhhhhhhhh
Q psy3240         113 LINRARLESMKPG-AILINT-SRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 li~~~~l~~mk~g-ailINv-~RG~iVde~aL~~~L~~~~i  151 (274)
                       +-...++   .| .+++.- -.-.+-+.++|++..++.|+
T Consensus       104 -~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  140 (361)
T 3u3x_A          104 -LAIRAMQ---HGKDVLVDKPGMTSFDQLAKLRRVQAETGR  140 (361)
T ss_dssp             -HHHHHHH---TTCEEEEESCSCSSHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence             1223333   33 244432 12233455666666666555

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.81  E-value=0.0078  Score=56.21  Aligned_cols=102  Identities=20%  Similarity=0.215  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh------H----hhcCCcc---cCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------A----DKRGAEH---TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a----~~~g~~~---~sl~ell~~aDvVil~l  104 (274)
                      .+.|++|++|| .+++..+++..+..+|+++.+..+..-.+.      +    .+.|...   .+++|+++.+|||..-.
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence            48999999999 478999999999999998777766543321      1    1345432   38999999999998855


Q ss_pred             CCCc------c-----cHHhccHHHHhcCCCCcEEEEcC---CCchhcHH
Q psy3240         105 ALTP------D-----THHLINRARLESMKPGAILINTS---RGQLVDQE  140 (274)
Q Consensus       105 Plt~------~-----T~~li~~~~l~~mk~gailINv~---RG~iVde~  140 (274)
                      =...      +     ...-++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  305 (340)
T 4ep1_A          256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGE  305 (340)
T ss_dssp             C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            3211      0     01246889999999999999987   67544443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.79  E-value=0.001  Score=62.41  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC---------CCeEEEEeCCCCChh---HhhcCCc--ccCHHHHhc--ccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY---------KVSKFLYTSRSKKPE---ADKRGAE--HTNIDDLCK--QSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~---------G~~vv~~~~r~~~~~---a~~~g~~--~~sl~ell~--~aDvVil~lPl  106 (274)
                      .+|||||+|.||+.-++.++..         +++++.+.++.....   +.+.++.  +.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988888653         455666655554322   4566764  348999996  57999999996


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      .....  +-...++.=|  .+++--- --.+-+.++|++..++.|+.
T Consensus       107 ~~H~~--~~~~al~aGk--hVl~EKP~a~~~~ea~~l~~~a~~~g~~  149 (412)
T 4gqa_A          107 HLHYT--MAMAAIAAGK--HVYCEKPLAVNEQQAQEMAQAARRAGVK  149 (412)
T ss_dssp             GGHHH--HHHHHHHTTC--EEEEESCSCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHH--HHHHHHHcCC--CeEeecCCcCCHHHHHHHHHHHHHhCCe
Confidence            43322  2223333222  2333321 12334555666665555553

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.78  E-value=0.0049  Score=59.11  Aligned_cols=114  Identities=10%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh-----HhhcC-Cc--ccCHHHHh-cccCE
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE-----ADKRG-AE--HTNIDDLC-KQSDF   99 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~-----a~~~g-~~--~~sl~ell-~~aDv   99 (274)
                      |.+|+|++|.|.|+|++|+.+|+.|...|++++...++..        ...     ....+ +.  ..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            5689999999999999999999999999998874544321        111     11112 11  12223443 37999


Q ss_pred             EEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240         100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus       100 Vil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      ++-|..     .+.++.+..+.++ =.+++..+-+.+- .+ ..+.|.++||.++ |...
T Consensus       293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~-A~~~L~~~Gi~~~PD~~a  344 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PE-AEAYLLGKGALVVPDLLS  344 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HH-HHHHHHHHTCEEECHHHH
T ss_pred             EEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HH-HHHHHHHCCCEEECHHHH
Confidence            998864     3456777777775 3588888887754 33 3466888888765 4444

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.77  E-value=0.003  Score=57.65  Aligned_cols=94  Identities=19%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh--hc-------CC--cc-cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD--KR-------GA--EH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~--~~-------g~--~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|+|||.|.||..+|..+...|. +++.+|....+.+  ..  ..       ..  .. .+. +.++.||+|+++++..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999988885 7666665443222  11  11       11  12 355 6789999999998542


Q ss_pred             cc-----------cHHhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         108 PD-----------THHLIN--RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       108 ~~-----------T~~li~--~~~l~~mk~gailINv~RG~iVde  139 (274)
                      ..           +..++.  .+.+....|++++++++  .++|.
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t--NPv~~  124 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDA  124 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC--SSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC--CchHH
Confidence            21           011111  12233345899999974  34443

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.76  E-value=0.005  Score=56.83  Aligned_cols=89  Identities=21%  Similarity=0.184  Sum_probs=63.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58999999999999999999999999 5556554444444 666776431        2333332     4899999886


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSRG  134 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~RG  134 (274)
                      ..+.     -...++.++++ ..++.++-.
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSCC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcCC
Confidence            4221     24567888998 899988753

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.76  E-value=0.0056  Score=58.20  Aligned_cols=106  Identities=16%  Similarity=0.200  Sum_probs=66.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---Hh---hcC---Cc-cc----CHHHHhc--ccCEEEEcC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---AD---KRG---AE-HT----NIDDLCK--QSDFIIITS  104 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~---~~g---~~-~~----sl~ell~--~aDvVil~l  104 (274)
                      -.+|||||+|.||+..++.++.. +++++.+.++.....   +.   +.|   .. +.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            45899999999999999998875 666666665554322   11   234   22 34    8999997  589999999


Q ss_pred             CCCcccHHhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhe
Q psy3240         105 ALTPDTHHLINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~  152 (274)
                      |........  ...   |+.|. +++.- ..-.+-+.++|++..++.|+.
T Consensus       100 p~~~h~~~~--~~a---l~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~  144 (444)
T 2ixa_A          100 PWEWHHEHG--VAA---MKAGKIVGMEVSGAITLEECWDYVKVSEQTGVP  144 (444)
T ss_dssp             CGGGHHHHH--HHH---HHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCC
T ss_pred             CcHHHHHHH--HHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence            964332222  223   34454 44442 122344666777777776654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.74  E-value=0.0038  Score=60.13  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=71.7

Q ss_pred             CCCCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhhc-CCccc-CHHHHhcccCEEEEcC
Q psy3240          37 GPALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-GAEHT-NIDDLCKQSDFIIITS  104 (274)
Q Consensus        37 g~~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~-g~~~~-sl~ell~~aDvVil~l  104 (274)
                      |..++|++|+|+|+-          .-...+++.|...|+++.+||+.......... ++..+ ++++.++.+|+|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            457899999999997          67899999999999988888876532112222 45554 7899999999999988


Q ss_pred             CCCcccHHhccHHHH-hcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         105 ALTPDTHHLINRARL-ESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       105 Plt~~T~~li~~~~l-~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +-. +-+. ++.+.+ +.|+ +.+++|+ |+- .|.+.+.+
T Consensus       397 ~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~~-~~~~~~~~  432 (446)
T 4a7p_A          397 EWD-AFRA-LDLTRIKNSLK-SPVLVDL-RNI-YPPAELER  432 (446)
T ss_dssp             CCT-TTTS-CCHHHHHTTBS-SCBEECS-SCC-SCHHHHHH
T ss_pred             CCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CCC-CCHHHHHh
Confidence            753 2222 344444 4455 4678886 543 56665544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.73  E-value=0.0049  Score=51.41  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--cCHH----HHhcccCEEEEcCCCCcccHH---
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--TNID----DLCKQSDFIIITSALTPDTHH---  112 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--~sl~----ell~~aDvVil~lPlt~~T~~---  112 (274)
                      ++|.|.| .|.||+.+++.|...|.++++.+++..+......++..  .++.    +.+..+|+|+.+.........   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            4799999 59999999999999999877777654332211133332  1222    678899999998876433211   


Q ss_pred             hccHHHHhcCCC--CcEEEEcCCCch
Q psy3240         113 LINRARLESMKP--GAILINTSRGQL  136 (274)
Q Consensus       113 li~~~~l~~mk~--gailINv~RG~i  136 (274)
                      ......++.|++  ...+|++|+...
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS~~~  106 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGGAAS  106 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECCCC-
T ss_pred             HHHHHHHHHHHhcCCceEEEEecceE
Confidence            112344555543  367777776543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.73  E-value=0.0068  Score=49.82  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=46.5

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHh-hcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KRGAEH--------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-~~g~~~--------~sl~ell~~aDvVil~lPlt  107 (274)
                      +++|.|.|. |.||+.+++.|...|.++++.+++..+.... ..++..        .++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999997 9999999999999999777776654321110 112221        14556788899999988654

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.73  E-value=0.0065  Score=57.37  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             CCCEEEEEccCh---HHHHHHHHHccCC-CeEEE-EeCCCCCh-h--HhhcCCc----ccCHHHHhcc-------cCEEE
Q psy3240          41 QNSTVGIVGCGR---IGLSVLEKLIPYK-VSKFL-YTSRSKKP-E--ADKRGAE----HTNIDDLCKQ-------SDFII  101 (274)
Q Consensus        41 ~gktVGIIGlG~---IG~~iA~~L~~~G-~~vv~-~~~r~~~~-~--a~~~g~~----~~sl~ell~~-------aDvVi  101 (274)
                      +-.+|||||+|.   ||+..+..++..+ ++++. +.++.... .  +.+.|+.    +.+++++++.       .|+|+
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~  115 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVA  115 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEE
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEE
Confidence            345899999999   9999988887665 55553 44444322 2  4556773    3489999976       89999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      +++|......  +-...+   +.|. +++.-- .-.+-+.++|++..++.|+.+
T Consensus       116 I~tp~~~H~~--~~~~al---~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  164 (417)
T 3v5n_A          116 IVTPNHVHYA--AAKEFL---KRGIHVICDKPLTSTLADAKKLKKAADESDALF  164 (417)
T ss_dssp             ECSCTTSHHH--HHHHHH---TTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred             ECCCcHHHHH--HHHHHH---hCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999743322  222333   4443 444421 234446667777666666643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.72  E-value=0.005  Score=56.80  Aligned_cols=88  Identities=19%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|.|.+|..+++.++.+|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            58999999999999999999999999 5556554444444 666776431        2333332     4899999886


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ..+.     -...++.++++ ..++.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence            4221     13567778998 88888874

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.72  E-value=0.0036  Score=56.92  Aligned_cols=106  Identities=16%  Similarity=0.042  Sum_probs=67.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCc-ccCHHHHh----------cccCEEEEcCCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAE-HTNIDDLC----------KQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~-~~sl~ell----------~~aDvVil~lPlt  107 (274)
                      .+|||||+ |.||+..++.++..+.+++.+.++.....  +... +.. +.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 78999999999988887776665554333  2222 233 24888887          5789999999963


Q ss_pred             cccHHhccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         108 PDTHHLINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      ..  .-+-...++   .|. +++.-- --.+-+.++|++..+++|+.+
T Consensus        84 ~H--~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  126 (312)
T 3o9z_A           84 LH--YPQIRMALR---LGANALSEKPLVLWPEEIARLKELEARTGRRV  126 (312)
T ss_dssp             GH--HHHHHHHHH---TTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred             hh--HHHHHHHHH---CCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE
Confidence            32  222233443   333 444321 223446667777766666643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.71  E-value=0.0056  Score=56.50  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            58999999999999999999999999 5556555444444 667776432        2333332     4899999886


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ..+.     -...++.++++ ..++.++-
T Consensus       275 ~~~~-----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQT-----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHhhcCCCEEEEECC
Confidence            4221     23567888998 88888875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.71  E-value=0.0024  Score=58.71  Aligned_cols=88  Identities=23%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc----CH---HHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT----NI---DDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~----sl---~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +. +.|+..+    +.   .++....|+|+-++...... 
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~-  258 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL-  258 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHH-
Confidence            789999999999999999999999997777776555444 44 6776532    22   22334589999988753322 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                          ...++.++++..++.++.
T Consensus       259 ----~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          259 ----EPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ----HHHHTTEEEEEEEEECSC
T ss_pred             ----HHHHHHhccCCEEEEeCC
Confidence                355678899999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.71  E-value=0.0027  Score=55.54  Aligned_cols=90  Identities=14%  Similarity=0.060  Sum_probs=58.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHHHhcccCEEEEcCCCCcc----cH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDLCKQSDFIIITSALTPD----TH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~ell~~aDvVil~lPlt~~----T~  111 (274)
                      .++|.|.|.|.||+.+++.|...|.++++.+++..+.. ....+++..     +++  +..+|+|+.+......    ++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~~~~~~   82 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPDSGGDPVLA   82 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCBTTBCHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCccccccHHHH
Confidence            47999999999999999999999998777776554333 223344321     333  7889999998875432    33


Q ss_pred             HhccHHHHhcCC-CCcEEEEcCCCc
Q psy3240         112 HLINRARLESMK-PGAILINTSRGQ  135 (274)
Q Consensus       112 ~li~~~~l~~mk-~gailINv~RG~  135 (274)
                      .+++.  +...+ .-..||.+|+..
T Consensus        83 ~l~~a--~~~~~~~~~~~v~~Ss~~  105 (286)
T 3ius_A           83 ALGDQ--IAARAAQFRWVGYLSTTA  105 (286)
T ss_dssp             HHHHH--HHHTGGGCSEEEEEEEGG
T ss_pred             HHHHH--HHhhcCCceEEEEeecce
Confidence            44422  22221 224677777644

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.71  E-value=0.0011  Score=60.58  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             CEEEEEccChHHHHHHHHHccC--------CCeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhcc--cCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--------KVSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCKQ--SDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--------G~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~~--aDvVil~lPlt  107 (274)
                      -+|||||+|.||+.-++.++..        +++++.+.++.... .  +.+.|+.  +.+++++++.  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            5899999999999888776542        23555555554432 2  4556764  3489999964  79999999964


Q ss_pred             c
Q psy3240         108 P  108 (274)
Q Consensus       108 ~  108 (274)
                      -
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.69  E-value=0.0048  Score=57.67  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCC-CeEEEEeCCCCChh--Hhh----cC-----CcccCHHHHhcccCEEEEcCCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--ADK----RG-----AEHTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~~----~g-----~~~~sl~ell~~aDvVil~lPlt  107 (274)
                      ...+|+|+| .|.||+.+++.|.... ++++...++.....  ...    .+     ....+ ++.+..+|+|+.|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 8999999999998654 45555554432211  111    11     11113 45567899999999964


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..      .+.....+.|+.+|+.+.
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            32      222223377899999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.68  E-value=0.0041  Score=57.08  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc---C---HHH----Hh----cccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT---N---IDD----LC----KQSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~---s---l~e----ll----~~aDvVil~l  104 (274)
                      .|.+|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+   +   .++    +.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            58899999999999999999999999 6666665444434 666777431   2   122    21    2489999988


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      .....    + ...++.++++..++.++..
T Consensus       251 g~~~~----~-~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEAS----I-QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHH----H-HHHHHHSCTTCEEEECSCC
T ss_pred             CChHH----H-HHHHHHhcCCCEEEEEecC
Confidence            64221    1 3567788999999998753

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.68  E-value=0.0034  Score=58.36  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC-C---ccc---CHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-A---EHT---NIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g-~---~~~---sl~ell~~aDvVil  102 (274)
                      ..+.+++|+|+|.|.+|+.+++.++.+|++++++++....+...-.. .   .+.   .+.++++++|+|+.
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            45789999999999999999999999999888888654433211100 0   111   35667888999865

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.68  E-value=0.0013  Score=60.21  Aligned_cols=89  Identities=17%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHHHHhc------ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK------QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~------~aDvVil~lPl  106 (274)
                      .|++|.|+|.|.+|..+++.++.+|+ ++++.+.+..+.+ +.+.|+...      ++.+.+.      ..|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 7776665443333 556666421      3333322      48999998874


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      .+.     -...++.++++..++.++..
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEccC
Confidence            222     13556778899999998753

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.68  E-value=0.0012  Score=57.45  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=44.6

Q ss_pred             CCEEEEEccChHHHHHHHH--HccCCCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhc-ccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEK--LIPYKVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCK-QSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~--L~~~G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~-~aDvVil~lPlt  107 (274)
                      .++|+|||+|.+|+.+|+.  ... |++++++.+..+... ....|+.   ..+++++++ +.|+|++++|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            3689999999999999996  334 787666554433322 1122322   237888886 589999999963

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.68  E-value=0.0051  Score=56.71  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=62.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58999999999999999999999999 5555554444444 667777532        2333332     4899999886


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ..+.     -...++.++++ ..++.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIET-----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHHhcCCCEEEEEcc
Confidence            4221     24567888998 88988874

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.68  E-value=0.003  Score=60.58  Aligned_cols=114  Identities=17%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC---------ChhHh----hcCC------------ccc-CH
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK---------KPEAD----KRGA------------EHT-NI   90 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~---------~~~a~----~~g~------------~~~-sl   90 (274)
                      |.+++|++|.|.|+|++|+.+|+.|...|++++...+...         .....    ..+.            ... +.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            5689999999999999999999999999998875555421         11111    1111            222 33


Q ss_pred             HHHhc-ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          91 DDLCK-QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        91 ~ell~-~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      ++++. .||+++-|.-.     +.|+.+..+.++ =.+++--+-+.+- .++ .+.|.++|+.++ |...
T Consensus       285 ~~~~~~~~Dil~P~A~~-----~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~~~PD~~a  346 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAAIE-----NVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVVVVPDILA  346 (421)
T ss_dssp             TGGGGCCCSEEEECSCS-----SCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCEEECHHHH
T ss_pred             hhhhcCCccEEEecCcC-----CccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCEEeChHHh
Confidence            55553 69999887732     345666666664 3567777766653 333 356777777655 4443

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.0043  Score=57.42  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=67.3

Q ss_pred             CEEEEEccChHHHHHHHHHcc---------CCCeEEEEeCCCCCh------h---Hh--hcCCccc--CHHHHhc--ccC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP---------YKVSKFLYTSRSKKP------E---AD--KRGAEHT--NIDDLCK--QSD   98 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~---------~G~~vv~~~~r~~~~------~---a~--~~g~~~~--sl~ell~--~aD   98 (274)
                      .+|||||+|.||+.+++.++.         .+.+++...++....      .   ..  ..+..+.  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            479999999999999999975         466666665554321      0   00  1122222  8899886  489


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhee
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVIS  153 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~~  153 (274)
                      +|+.++|....... .-.-....|+.|.-+|-..-+.+. ..+.|.+..+++|+.+
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~  137 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRL  137 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcE
Confidence            99999996432111 112234456777777766444443 4567777666666643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.67  E-value=0.0042  Score=58.19  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lP  105 (274)
                      -.|.+|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+      ++.+.+      ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            468999999999999999999999999 5555554443434 667776532      333322      14899999887


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ....+...+..-....++++..++.++-
T Consensus       292 ~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            5322221111111133489999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.67  E-value=0.0026  Score=58.41  Aligned_cols=96  Identities=19%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hcCC------cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KRGA------EH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~g~------~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      .++|+|||.|.+|.++|..|...|.  +++.+|....+.+  +.  ....      .. .+..+.++.||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999987776  6788876543322  11  1111      11 123567899999999997532


Q ss_pred             ccHHh------------cc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         109 DTHHL------------IN--RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       109 ~T~~l------------i~--~~~l~~mk~gailINv~RG~iVde~  140 (274)
                       ..+.            +.  .+.+....|++++|+++  .++|.-
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  129 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDII  129 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHH
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHH
Confidence             1111            10  11233336899999973  445443

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.67  E-value=0.0046  Score=56.97  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=62.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 5555554444444 566776431        2333332     4899999886


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ..+.     -...++.++++ ..++.++-
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEec
Confidence            4221     24567888998 89998874

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.65  E-value=0.0071  Score=55.48  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCcc---cCHHHHhcccCEEEEcCCCCc
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAEH---TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~~---~sl~ell~~aDvVil~lPlt~  108 (274)
                      .+.|++|+++|=   +++..+++..+..+ |+++.+..+..-.+.   ..+.|...   .+++|+++.+|+|..-.--.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            589999999996   69999999999999 997777666443222   23445542   389999999999998654331


Q ss_pred             c------c-----HHhccHHHHhcCCCCcEEEEcC
Q psy3240         109 D------T-----HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       109 ~------T-----~~li~~~~l~~mk~gailINv~  132 (274)
                      .      .     ..-++.+.++.+||+++|.-+.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            1      1     2346889999999999999986

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.64  E-value=0.0042  Score=56.61  Aligned_cols=107  Identities=10%  Similarity=-0.008  Sum_probs=66.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCcc-cCHHHHh-----------cccCEEEEcCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAEH-TNIDDLC-----------KQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~~-~sl~ell-----------~~aDvVil~lPl  106 (274)
                      .+|||||+ |.||+..++.++..+.+++.+.++.....  +... +... .++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 79999999999988887776665554333  2222 3332 4888887           568999999996


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhhee
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTS-RGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i~~  153 (274)
                      .....  +-...++.=|  .+++.-- --.+-+.++|++..+++|+.+
T Consensus        84 ~~H~~--~~~~al~aGk--hVl~EKPla~~~~ea~~l~~~a~~~g~~~  127 (318)
T 3oa2_A           84 YLHYP--HIAAGLRLGC--DVICEKPLVPTPEMLDQLAVIERETDKRL  127 (318)
T ss_dssp             GGHHH--HHHHHHHTTC--EEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHH--HHHHHHHCCC--eEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence            43322  2233443322  2444321 223446667777666666643

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.64  E-value=0.013  Score=54.40  Aligned_cols=124  Identities=20%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             hhhccchhccCCCCccCCCC----------CCCCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--H-
Q psy3240          15 KYVSTPVSCRGEWKSWAPNF----------MCGPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-   80 (274)
Q Consensus        15 r~~~~~~~~~~~w~~~~~~~----------~~g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-   80 (274)
                      +|..-|+...|. ...+|..          ..| .+.|++|++|| .+++..+.+..+..+|+++.+..+..-.+.  . 
T Consensus       122 ~~~~vPVINag~-~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~  199 (323)
T 3gd5_A          122 HYAGIPVINALT-DHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVS  199 (323)
T ss_dssp             HHHCSCEEEEEC-SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHH
T ss_pred             HhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHH
Confidence            455666666665 3344421          013 58999999999 579999999999999997777766543221  1 


Q ss_pred             -------hhcCCc--c-cCHHHHhcccCEEEEcCCCCc-------cc-----HHhccHHHHhcCCCCcEEEEcC---CCc
Q psy3240          81 -------DKRGAE--H-TNIDDLCKQSDFIIITSALTP-------DT-----HHLINRARLESMKPGAILINTS---RGQ  135 (274)
Q Consensus        81 -------~~~g~~--~-~sl~ell~~aDvVil~lPlt~-------~T-----~~li~~~~l~~mk~gailINv~---RG~  135 (274)
                             .+.|..  . .+++|+++.+|+|..-.=-..       +-     ..-++.+.++.+||+++|.-+.   ||.
T Consensus       200 ~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~  279 (323)
T 3gd5_A          200 ARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGE  279 (323)
T ss_dssp             HHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTT
T ss_pred             HHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCc
Confidence                   123433  2 389999999999988542111       11     1246899999999999999875   665


Q ss_pred             hhcHH
Q psy3240         136 LVDQE  140 (274)
Q Consensus       136 iVde~  140 (274)
                      =|+.+
T Consensus       280 EI~~e  284 (323)
T 3gd5_A          280 EITDE  284 (323)
T ss_dssp             TBCHH
T ss_pred             eeCHH
Confidence            44433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.63  E-value=0.0081  Score=50.35  Aligned_cols=92  Identities=9%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--cCHH----HHhcccCEEEEcCCCC--cc--c
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--TNID----DLCKQSDFIIITSALT--PD--T  110 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--~sl~----ell~~aDvVil~lPlt--~~--T  110 (274)
                      ++|.|.|. |.||+.+++.|...|.++++.+++..+.. ....++..  .++.    +.+..+|+|+.+....  +.  .
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47999997 99999999999999998777765533222 11123332  1222    6788999999988653  11  1


Q ss_pred             HHh-ccHHHHhcCC-CCcEEEEcCCC
Q psy3240         111 HHL-INRARLESMK-PGAILINTSRG  134 (274)
Q Consensus       111 ~~l-i~~~~l~~mk-~gailINv~RG  134 (274)
                      .++ .....++.|+ .+..+|++|+.
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            111 1244566665 34778888764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.62  E-value=0.0023  Score=59.26  Aligned_cols=100  Identities=18%  Similarity=0.159  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hc------CCcc-cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KR------GAEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~------g~~~-~sl~ell~~aDvVil~lP  105 (274)
                      .-.+++|+|||.|.||.++|..|...|.  +++++|....+..  +.  ..      .... .+..+.++.||+|+++..
T Consensus         6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG   85 (326)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence            3467899999999999999999986665  5677775433222  11  11      1111 244678999999999875


Q ss_pred             CCcc---cHH-hc--c-------HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         106 LTPD---THH-LI--N-------RARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       106 lt~~---T~~-li--~-------~~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ....   ++. ++  |       .+.+....|++++++++  .++|.-
T Consensus        86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~  131 (326)
T 3vku_A           86 APQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDIL  131 (326)
T ss_dssp             CC----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHH
Confidence            3211   121 22  1       12344456899999996  455543

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.62  E-value=0.015  Score=53.47  Aligned_cols=100  Identities=17%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh--H----h----hcCCc---ccCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE--A----D----KRGAE---HTNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a----~----~~g~~---~~sl~ell~~aDvVil~  103 (274)
                      .+.|.+|+++|=|  ++..+++..+..+|+++.+..+..-.+.  .    .    +.|..   ..+++|+++.+|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            5899999999975  9999999999999998777766543221  1    1    44543   24899999999999994


Q ss_pred             CCC-------Ccc-----cHHhccHHHHhcCCCCcEEEEcC---CCchhc
Q psy3240         104 SAL-------TPD-----THHLINRARLESMKPGAILINTS---RGQLVD  138 (274)
Q Consensus       104 lPl-------t~~-----T~~li~~~~l~~mk~gailINv~---RG~iVd  138 (274)
                      .=.       .++     ...-++.+.++.+||+++|.-+.   ||.=|+
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~  274 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEIT  274 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBC
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccC
Confidence            420       011     12456899999999999999986   455333

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.61  E-value=0.003  Score=55.99  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~   73 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+ ++|.
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~   60 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD   60 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            46899999999999999999999999998554 4443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.61  E-value=0.0026  Score=58.12  Aligned_cols=91  Identities=13%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-Hh---hc---CCcc-cCHHHHhcccCEEEEcCCCCc---
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-AD---KR---GAEH-TNIDDLCKQSDFIIITSALTP---  108 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~---~~---g~~~-~sl~ell~~aDvVil~lPlt~---  108 (274)
                      .++|+|||.|.||..+|..+...|.  +++.+|....... +.   ..   .+.. .++ +.++.||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            4799999999999999999876666  7788876543111 11   11   1222 366 67899999999873311   


Q ss_pred             -------ccHHhcc--HHHHhcCCCCcEEEEcCC
Q psy3240         109 -------DTHHLIN--RARLESMKPGAILINTSR  133 (274)
Q Consensus       109 -------~T~~li~--~~~l~~mk~gailINv~R  133 (274)
                             .+..++.  .+.+....|++++++++-
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence                   1111111  012233348999999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.60  E-value=0.0029  Score=56.56  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-C------HHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-N------IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-s------l~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|++|.|+|. |.+|..+++.++..|+++++.+++..+.+ +.+.|+... +      +.+.+..+|+|+. +.. +.  
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~--  200 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KE--  200 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TT--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HH--
Confidence            5889999998 99999999999999997777776554444 556776532 2      2223357899998 764 22  


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                         -...++.|+++..++.++.
T Consensus       201 ---~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          201 ---VEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             ---HHHHHTTEEEEEEEEEC--
T ss_pred             ---HHHHHHhhccCCEEEEEeC
Confidence               2467788899999998875

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.60  E-value=0.0023  Score=58.70  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=65.7

Q ss_pred             CCEEEEEccC-hHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCC-c-ccCHHHHhc--ccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCG-RIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGA-E-HTNIDDLCK--QSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG-~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~-~-~~sl~ell~--~aDvVil~lPlt~~T~  111 (274)
                      -.+|||||+| .+|+..++.++..  +++++.+.++.....   +...+. . +.+++++++  +.|+|++++|......
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   97 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP   97 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence            3589999999 8999999999876  466655655554322   344565 3 348999986  5899999999633222


Q ss_pred             HhccHHHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         112 HLINRARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       112 ~li~~~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                        +-...++   .| .+++.-- .-.+-+.++|++..++.|+.
T Consensus        98 --~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  135 (340)
T 1zh8_A           98 --FIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT  135 (340)
T ss_dssp             --HHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             --HHHHHHH---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence              2223333   33 3445421 12334555666666666653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.60  E-value=0.0019  Score=58.90  Aligned_cols=89  Identities=16%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh----cccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC----KQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell----~~aDvVil~lPlt~~  109 (274)
                      .|++|.|+|.|.||..+++.++.+|+++++.+.+..+.+ +.+.|+...      ++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            588999999999999999999999997666554433333 556666421      232222    458999998864222


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         110 THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG  134 (274)
                           -...++.|+++..++.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 24567778999999998764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.60  E-value=0.002  Score=58.66  Aligned_cols=89  Identities=13%  Similarity=0.110  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhc----ccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK----QSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~----~aDvVil~lPlt~  108 (274)
                      -.|++|.|+|.|.+|...++.++..|+++++.+.+..+.+ +++.|+...      ++.+.+.    ..|+|+.++...+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~  244 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK  244 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH
Confidence            3689999999999999999999999997777666554444 666776431      3333332    5799998875322


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .     -...++.++++..++.++-
T Consensus       245 ~-----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          245 A-----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             H-----HHHHHHHEEEEEEEEECSC
T ss_pred             H-----HHHHHHHhccCCEEEEeCC
Confidence            2     2356677899999999874

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.60  E-value=0.0052  Score=57.46  Aligned_cols=88  Identities=14%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCC------CeEEEEeC-CCCChhHh-------h-cCCcc--cCHHHHhcccCEEEEc
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYK------VSKFLYTS-RSKKPEAD-------K-RGAEH--TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G------~~vv~~~~-r~~~~~a~-------~-~g~~~--~sl~ell~~aDvVil~  103 (274)
                      .++|+|+| .|.+|+.+.+.|...+      .+++...+ ++......       . .....  .+. +.++.+|+|++|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~a   87 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLA   87 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEEC
Confidence            36899999 9999999999998765      34444443 22211111       0 11111  233 345689999999


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      +|... +     .+..+.++.|+.+|+.|.---
T Consensus        88 lg~~~-s-----~~~~~~~~~G~~vIDlSa~~R  114 (352)
T 2nqt_A           88 LPHGH-S-----AVLAQQLSPETLIIDCGADFR  114 (352)
T ss_dssp             CTTSC-C-----HHHHHHSCTTSEEEECSSTTT
T ss_pred             CCCcc-h-----HHHHHHHhCCCEEEEECCCcc
Confidence            99653 2     333333467899999875433

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.59  E-value=0.01  Score=54.43  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--H-hhcCCcc-cCHHHHhcccCEEEEcCCCC------
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-DKRGAEH-TNIDDLCKQSDFIIITSALT------  107 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-~~~g~~~-~sl~ell~~aDvVil~lPlt------  107 (274)
                      .+.|.+|+++|= +++.++.+..+..+|+++.+..+..-.+.  . ....+.. .+++|+++.+|+|..-.=..      
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            589999999995 89999999999999998777766554332  1 1223443 48999999999999844211      


Q ss_pred             ccc------HHhccHHHHhcCCCCcEEEEcC---CCchhcHH
Q psy3240         108 PDT------HHLINRARLESMKPGAILINTS---RGQLVDQE  140 (274)
Q Consensus       108 ~~T------~~li~~~~l~~mk~gailINv~---RG~iVde~  140 (274)
                      ...      ..-++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            111      1346889999999999999987   66544443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0052  Score=56.84  Aligned_cols=88  Identities=26%  Similarity=0.235  Sum_probs=63.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~lP  105 (274)
                      .|.+|.|+|.|.+|...++.++..|+ ++++.+.+..+.+ +++.|+..+        ++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58999999999999999999999999 5666655555544 677777532        2333332     3899999887


Q ss_pred             CCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPG-AILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~g-ailINv~R  133 (274)
                      ..+.     -...++.++++ ..++.++-
T Consensus       273 ~~~~-----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NVSV-----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhccCCEEEEEcc
Confidence            4221     23567788996 88888874

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.56  E-value=0.002  Score=60.51  Aligned_cols=65  Identities=18%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      -.+|||||+| +|+.-++.++..  +++.++..++.....   +.+.|+.. .++++++++.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4689999999 799888888765  576676666555332   56778864 48999999999999999964

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.56  E-value=0.0054  Score=56.53  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh--hc-------CCcc--cCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD--KR-------GAEH--TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~--~~-------g~~~--~sl~ell~~aDvVil~lPl  106 (274)
                      ..++|+|||.|.||.++|..|...|. +++.+|....+..  +.  ..       ....  .+..+.++.||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            45799999999999999999976665 7777776654332  11  11       1211  2335788999999999753


Q ss_pred             Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 TP---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 t~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ..   .++. ++  |.       +.+....|++++++++  .++|.-
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  128 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIM  128 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            21   1221 11  11       1233335899999995  555543

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.55  E-value=0.0038  Score=60.62  Aligned_cols=115  Identities=10%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-------CC-h-h------Hhhc-------------CCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-------KK-P-E------ADKR-------------GAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-------~~-~-~------a~~~-------------g~~~~   88 (274)
                      |.+|+|++|.|-|+|++|+.+|+.|...|++++...+..       .- . +      .+..             ++++.
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            568999999999999999999999999999877444421       00 0 0      0000             22322


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      +.++++ ..||+.+-|...     +.|+.+..+.+.  .=.+++-.+-+.+ ..+| .+.|.++||.++ |...
T Consensus       327 ~~~~~~~~~~DI~iPcA~~-----~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl~~PD~~a  393 (470)
T 2bma_A          327 PNEKPWGVPCTLAFPCATQ-----NDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNIIYCPSKAA  393 (470)
T ss_dssp             SSCCTTSSCCSEEEECSST-----TCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCEEECHHHH
T ss_pred             cCcCeeecCccEEEecccc-----CcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcEEEChHHh
Confidence            223333 368998887632     445555444441  2236666666664 4444 577888887655 4433

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.55  E-value=0.0046  Score=57.21  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChhH----hhc-------CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPEA----DKR-------GAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a----~~~-------g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ..++|+|||.|.||.++|..|...|.  +++.+|....+...    ...       ++.. .+..+.++.||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35789999999999999999987665  56777754332221    111       1111 1334678999999999864


Q ss_pred             Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         107 TP---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       107 t~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                      ..   .++. ++  |.       +.+....|++++++++  .++|.
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd~  127 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVDI  127 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHHH
Confidence            21   1221 12  11       2344456899999998  44543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.55  E-value=0.0057  Score=55.93  Aligned_cols=89  Identities=20%  Similarity=0.230  Sum_probs=62.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------C-HHHH---h-----cccCEEEEc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------N-IDDL---C-----KQSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------s-l~el---l-----~~aDvVil~  103 (274)
                      .|++|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+..+       + .+++   .     ...|+|+.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            589999999999999999999999998666654443333 556676421       1 1222   2     248999998


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      +.....     -...++.++++..++.++..
T Consensus       248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC-----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEecC
Confidence            864221     13567788999999998753

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.55  E-value=0.0034  Score=57.48  Aligned_cols=104  Identities=15%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCCCEEEEEccChHHH-HHHHHHccC-CCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcc---cCEEEEcCCCCcccHHh
Q psy3240          40 LQNSTVGIVGCGRIGL-SVLEKLIPY-KVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQ---SDFIIITSALTPDTHHL  113 (274)
Q Consensus        40 L~gktVGIIGlG~IG~-~iA~~L~~~-G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~---aDvVil~lPlt~~T~~l  113 (274)
                      .+-.+|||||+|.||+ ..++.++.. +++++.+.++....    .++. +.+++++++.   .|+|++++|....  .-
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~----~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H--~~   96 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV----EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYR--YE   96 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC----TTSEEESSHHHHHHHCTTCCEEEECSCHHHH--HH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh----cCCCccCCHHHHHhCCCCCCEEEEeCCcHHH--HH
Confidence            3456999999999999 788888765 67666666655432    3554 3489999876   8999999994322  21


Q ss_pred             ccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         114 INRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       114 i~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      +-...+   +.|. +++.-- --.+-+.++|++..++.|+.
T Consensus        97 ~~~~al---~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  134 (330)
T 4ew6_A           97 AAYKAL---VAGKHVFLEKPPGATLSEVADLEALANKQGAS  134 (330)
T ss_dssp             HHHHHH---HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHH---HcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence            222333   3333 333321 12334555666666665553

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.53  E-value=0.0083  Score=54.54  Aligned_cols=108  Identities=13%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhccHHH
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLINRAR  118 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~~~~  118 (274)
                      .+++|+|. |++|+.+++.++..|++ +++.-.+.+....-.|+.. .+++|+..  ..|++++++|. +.+...+. +.
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v~-ea   90 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAVF-EA   90 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHHH-HH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHHH-HH
Confidence            35778898 99999999999988987 3333222211111135543 48999988  89999999995 33444442 23


Q ss_pred             HhcCCCCcEEEEcCCC-chhcHHHHHhhhhhhhheeeh
Q psy3240         119 LESMKPGAILINTSRG-QLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       119 l~~mk~gailINv~RG-~iVde~aL~~~L~~~~i~~~D  155 (274)
                      ++. +... +|..+.| ...+++.|.+..++.|+.++.
T Consensus        91 ~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~viG  126 (294)
T 2yv1_A           91 IDA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGVKIIG  126 (294)
T ss_dssp             HHT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             HHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            332 2222 4444444 234667888888888886663

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.52  E-value=0.0041  Score=53.34  Aligned_cols=95  Identities=16%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcCCc--------ccCHHHHhcccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRGAE--------HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g~~--------~~sl~ell~~aDvVil~lPlt~  108 (274)
                      ...|+|.|.| .|.||+.+++.|...| .++++.+++..+.. ....++.        ..+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4468999999 6999999999999999 77777665543221 1111211        1145678899999998876432


Q ss_pred             ccHHhccHHHHhcCCC--CcEEEEcCCCch
Q psy3240         109 DTHHLINRARLESMKP--GAILINTSRGQL  136 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~--gailINv~RG~i  136 (274)
                      ..  ......++.|++  ...||++|+...
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112234444432  247888887554

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.52  E-value=0.0023  Score=51.15  Aligned_cols=101  Identities=15%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             CEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ++|+|||.    +..|..+.+.|+..|++++-++++...    -.|.. +.++.++-. .|++++++|. +.+..++.+ 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~e-   77 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYNY-   77 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHHH-
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHHH-
Confidence            68999998    579999999999989876666654332    13443 337777777 9999999994 445555543 


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .. .+...+++++.|.    .++++.+..++.|+..+.
T Consensus        78 ~~-~~g~k~v~~~~G~----~~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           78 IL-SLKPKRVIFNPGT----ENEELEEILSENGIEPVI  110 (122)
T ss_dssp             HH-HHCCSEEEECTTC----CCHHHHHHHHHTTCEEEE
T ss_pred             HH-hcCCCEEEECCCC----ChHHHHHHHHHcCCeEEC
Confidence            22 2344467765543    457788888888887663

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.50  E-value=0.022  Score=52.52  Aligned_cols=101  Identities=16%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--H----h----hcCCc---ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A----D----KRGAE---HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a----~----~~g~~---~~sl~ell~~aDvVil~l  104 (274)
                      .+.|.+|+++|= +++..+++..+..+|+++.+..+..-.+.  .    .    +.|..   ..+++|+++.+|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            589999999995 89999999999999998777766543221  1    1    44543   248999999999999944


Q ss_pred             CC-------Ccc-----cHHhccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         105 AL-------TPD-----THHLINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       105 Pl-------t~~-----T~~li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                      =.       .++     ...-++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~  281 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTD  281 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCH
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCH
Confidence            31       111     12346899999999999999986   4554443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.49  E-value=0.002  Score=56.35  Aligned_cols=66  Identities=23%  Similarity=0.264  Sum_probs=46.2

Q ss_pred             CCEEEEEccChHHHHHHHHH--ccCCCeEEEEeCCCCC-hh-H-hhcCCcc---cCHHHHhcc--cCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKL--IPYKVSKFLYTSRSKK-PE-A-DKRGAEH---TNIDDLCKQ--SDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L--~~~G~~vv~~~~r~~~-~~-a-~~~g~~~---~sl~ell~~--aDvVil~lPlt  107 (274)
                      .++|+|+|+|++|+.+++.+  ...|++.+++.+..+. .. . .-.|+..   .++++++++  .|++++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999984  4567877765544443 32 2 2235543   267788764  89999999964

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.48  E-value=0.0023  Score=59.30  Aligned_cols=88  Identities=23%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHHHHhc--------ccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK--------QSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~--------~aDvVil~l  104 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+..+      ++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            58999999999999999999999999 4555544433333 566777532      4444443        389999987


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...+.     -...++.++++..++.++.
T Consensus       262 G~~~~-----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVAET-----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCHHH-----HHHHHHHEEEEEEEEECSC
T ss_pred             CCHHH-----HHHHHHHhccCCEEEEEec
Confidence            63221     2356677899999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.48  E-value=0.011  Score=54.07  Aligned_cols=110  Identities=11%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             CCEEEEEccChHHHH-HHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHh-cccCEEEEcCCCCcccHH-
Q psy3240          42 NSTVGIVGCGRIGLS-VLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLC-KQSDFIIITSALTPDTHH-  112 (274)
Q Consensus        42 gktVGIIGlG~IG~~-iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell-~~aDvVil~lPlt~~T~~-  112 (274)
                      .++|.|||+|.+|.+ +|+.|+..|+++.++|.+...+.   ..+.|+...   +.+++. ..+|+|+..--..+...- 
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999996 99999999998888887654322   345677543   455555 579999985322222211 


Q ss_pred             ---------hcc-HHHHhc-C-CCCc-EEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 ---------LIN-RARLES-M-KPGA-ILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 ---------li~-~~~l~~-m-k~ga-ilINv~RG~iVde~aL~~~L~~~~i  151 (274)
                               ++. .+++.. + +... +-|--+.|+.--..-+...|+..|.
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence                     222 233443 3 3323 3344456887777777777887664

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.48  E-value=0.006  Score=55.58  Aligned_cols=95  Identities=20%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh---h----c--CC--ccc-CHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD---K----R--GA--EHT-NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~---~----~--g~--~~~-sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|||.|.+|.++|..|...|.  +++.+|.+..+.+  +.   .    .  ..  ... + .+.++.||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            489999999999999999987666  6677775543321  10   0    1  11  112 5 7889999999999864


Q ss_pred             Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 TP---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 t~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ..   .++. ++  |.       +.+....|++++++++  .++|.-
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~  124 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVM  124 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHH
Confidence            32   1221 12  11       2345567999999998  566654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0058  Score=55.78  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=63.2

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-------cCHHHHhc-----ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-------TNIDDLCK-----QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-------~sl~ell~-----~aDvVil~lPl  106 (274)
                      .|++|.|+|. |.||..+++.++..|+++++.+++..+.+ +.+.|...       .++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            5899999999 89999999999999997777765544433 45556532       13444433     47999998763


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      .+.     -...++.|+++..+|+++..
T Consensus       249 ~~~-----~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAA-----IEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHH-----HHHHTTSEEEEEEEEECCCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEeCC
Confidence            221     24567788999999998753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.47  E-value=0.0027  Score=52.96  Aligned_cols=88  Identities=16%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHH-H---h--cccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDD-L---C--KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~e-l---l--~~aDvVil~lPl  106 (274)
                      .|++|.|+| .|.||+.+++.++..|+++++.+++..+.+ +.+.|....      +..+ +   .  ...|+|+.++. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            588999999 699999999999999997776665433322 334454211      2212 1   1  13788887663 


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                       ..    .-...++.|+++..+|+++..
T Consensus       117 -~~----~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          117 -GE----AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             -TH----HHHHHHHTEEEEEEEEECSCG
T ss_pred             -hH----HHHHHHHHhccCCEEEEEcCC
Confidence             11    124566778888888888753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.46  E-value=0.009  Score=55.16  Aligned_cols=93  Identities=17%  Similarity=0.330  Sum_probs=59.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--H---hh------cCCc--c-cCHHHHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--A---DK------RGAE--H-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a---~~------~g~~--~-~sl~ell~~aDvVil~l  104 (274)
                      .+.++|+|||.|.+|..+|..|...|. +++.+|....+.+  +   ..      ....  . .+. +.++.||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            356799999999999999999987776 7778876654332  1   11      1222  1 244 7899999999997


Q ss_pred             CCCcc---cHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPD---THH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~---T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                      +....   ++. ++  |.       +.+....|++++++++-
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            53211   111 11  11       12333358999999983

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.45  E-value=0.0026  Score=61.51  Aligned_cols=116  Identities=15%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             CCCEEEEEccChH--HHHHHHHHcc----CCCeEEEEeCCCCChh-Hh--h--c-----CCcc-cCHHHHhcccCEEEEc
Q psy3240          41 QNSTVGIVGCGRI--GLSVLEKLIP----YKVSKFLYTSRSKKPE-AD--K--R-----GAEH-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIGlG~I--G~~iA~~L~~----~G~~vv~~~~r~~~~~-a~--~--~-----g~~~-~sl~ell~~aDvVil~  103 (274)
                      +.++|+|||.|.+  |..+++.+..    .| +++.||......+ ..  .  .     .+.. .+++++++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999998  5788877653    35 6777776543321 11  0  0     1122 3889999999999999


Q ss_pred             CCCC-----------cccHHh----------------------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         104 SALT-----------PDTHHL----------------------IN--RARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       104 lPlt-----------~~T~~l----------------------i~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      ++..           |.-.++                      +.  .+.+....|++++||++----+-..++.+.+..
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~  162 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG  162 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence            9642           211222                      10  123334468999999986555555666654432


Q ss_pred             -hhheeehhh
Q psy3240         149 -IRVISISMV  157 (274)
Q Consensus       149 -~~i~~~D~~  157 (274)
                       +=++.+|+.
T Consensus       163 ~rviG~C~~~  172 (450)
T 3fef_A          163 IKAIGCCHEV  172 (450)
T ss_dssp             CEEEECCSHH
T ss_pred             CCEEEeCCcH
Confidence             334555543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.43  E-value=0.007  Score=55.98  Aligned_cols=105  Identities=14%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             CEEEEEc-cChHHHH-HH----HHHccCCCeE-----------EEEeCCCCChh--HhhcCCc--ccCHHHHhcc--cCE
Q psy3240          43 STVGIVG-CGRIGLS-VL----EKLIPYKVSK-----------FLYTSRSKKPE--ADKRGAE--HTNIDDLCKQ--SDF   99 (274)
Q Consensus        43 ktVGIIG-lG~IG~~-iA----~~L~~~G~~v-----------v~~~~r~~~~~--a~~~g~~--~~sl~ell~~--aDv   99 (274)
                      .+||||| +|.||+. .+    +.++..+.-.           .+++++..+..  +...++.  +.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6665444211           14444433333  4566774  3589999975  899


Q ss_pred             EEEcCCCCcccHHhccHHHHhcCCCCc-EEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         100 IIITSALTPDTHHLINRARLESMKPGA-ILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       100 Vil~lPlt~~T~~li~~~~l~~mk~ga-ilINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      |++++|........  ...+   +.|. +++.-- --.+-+.++|++..++.|+.
T Consensus        87 V~i~tp~~~h~~~~--~~al---~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~  136 (383)
T 3oqb_A           87 FFDAATTQARPGLL--TQAI---NAGKHVYCEKPIATNFEEALEVVKLANSKGVK  136 (383)
T ss_dssp             EEECSCSSSSHHHH--HHHH---TTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCchHHHHHH--HHHH---HCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCe
Confidence            99999974433222  2333   4443 444321 22334566777766666653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.42  E-value=0.0014  Score=61.98  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCChh--Hhhc------CCc--------ccCHHHHhcc--cCEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKPE--ADKR------GAE--------HTNIDDLCKQ--SDFII  101 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~~--a~~~------g~~--------~~sl~ell~~--aDvVi  101 (274)
                      ++|+|+|.|.||+.+|+.|...|   ..+++++++..+..  +...      .+.        ..++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999998877   35666665443322  1111      121        1246677877  89999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhc--------HHHHHhhhhhhhheee
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD--------QEALIDFIADIRVISI  154 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVd--------e~aL~~~L~~~~i~~~  154 (274)
                      .++|... ...++ ...+   +.|.-++|++.-...+        ..++.+..++.|+.++
T Consensus        82 n~ag~~~-~~~v~-~a~l---~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i  137 (405)
T 4ina_A           82 NIALPYQ-DLTIM-EACL---RTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMAL  137 (405)
T ss_dssp             ECSCGGG-HHHHH-HHHH---HHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEE
T ss_pred             ECCCccc-ChHHH-HHHH---HhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEE
Confidence            9988532 12222 2222   4566677775432221        1356666666666543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.41  E-value=0.011  Score=52.80  Aligned_cols=70  Identities=16%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh----cCCcc--c------CHHHHhcccCEEE
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK----RGAEH--T------NIDDLCKQSDFII  101 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~----~g~~~--~------sl~ell~~aDvVi  101 (274)
                      +.++.|+++.|+| .|.||+++++.|...|+++++.+++..+..  +..    .++..  .      +++++++++|+|+
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlV  193 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF  193 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEE
Confidence            4568999999999 999999999999999997666655432222  111    12111  1      2456677788888


Q ss_pred             EcCCC
Q psy3240         102 ITSAL  106 (274)
Q Consensus       102 l~lPl  106 (274)
                      .+.+.
T Consensus       194 n~ag~  198 (287)
T 1lu9_A          194 TAGAI  198 (287)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            88874

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.40  E-value=0.0045  Score=56.93  Aligned_cols=98  Identities=21%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCC--CChh--Hhh---------cCC--cccCHHHHhcccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRS--KKPE--ADK---------RGA--EHTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~--~~~~--a~~---------~g~--~~~sl~ell~~aDvVil~l  104 (274)
                      ..++|+|||.|.||..+|..+...|. +++.+|...  .+..  +.+         ...  ...+-.+.++.||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            56899999999999999999988887 777777652  1111  100         111  1122356789999999997


Q ss_pred             CCC--c-ccH-Hhc--c----H---HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         105 ALT--P-DTH-HLI--N----R---ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       105 Plt--~-~T~-~li--~----~---~~l~~mk~gailINv~RG~iVde~  140 (274)
                      ...  | .++ .++  |    +   +.+....|++++++++  .++|.-
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~  133 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAM  133 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHH
Confidence            432  1 122 122  1    1   1233346899999998  444443

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.38  E-value=0.0044  Score=60.01  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh-H------hh-------------cCCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE-A------DK-------------RGAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~-a------~~-------------~g~~~~   88 (274)
                      |.+|+|+||.|-|+|++|+.+|+.|...|++++...+...        ..+ .      +.             .+++..
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            6789999999999999999999999999997764444321        000 0      00             123333


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      +.++++ ..||+.+-|.-     .+.|+.+..+++.  +=.+++-.+-+.+-.+ | .+.|.++||.++
T Consensus       314 ~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e-A-~~iL~~rGI~~~  375 (456)
T 3r3j_A          314 ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPTHIK-A-LHKLKQNNIILC  375 (456)
T ss_dssp             CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCBCTT-H-HHHHHTTTCEEE
T ss_pred             CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCCCHH-H-HHHHHHCCCEEe
Confidence            444444 36999888654     3557766666652  2357777777775433 2 356777777544

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.38  E-value=0.019  Score=52.77  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             CCC-CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--H----h----hcCCcc---cCHHHHhcccCEEEEc
Q psy3240          39 ALQ-NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A----D----KRGAEH---TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~-gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a----~----~~g~~~---~sl~ell~~aDvVil~  103 (274)
                      .+. |++|++|| .+++..+.+..+..+|+++.+..+..-.+.  .    .    ..|...   .+++|+++.+|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            588 99999999 578999999999999997777766543221  1    1    334432   4899999999999886


Q ss_pred             CC--CCc--c--------cHHhccHHHHhcCCCCcEEEEcC---CCchhcHH
Q psy3240         104 SA--LTP--D--------THHLINRARLESMKPGAILINTS---RGQLVDQE  140 (274)
Q Consensus       104 lP--lt~--~--------T~~li~~~~l~~mk~gailINv~---RG~iVde~  140 (274)
                      .=  ...  +        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            51  111  1        12336889999999999999986   66545443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.37  E-value=0.0031  Score=57.71  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHHHHhc------ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK------QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~------~aDvVil~lPl  106 (274)
                      .|.+|.|+|.|.||...++.++..|+ ++++.+....+.+ +++.|+..+      ++.+.+.      ..|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            58999999999999999999999999 5666554443334 666776432      3333221      48999988764


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .+.     -...++.++++..++.++-
T Consensus       246 ~~~-----~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          246 VHT-----FAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             hHH-----HHHHHHHHhcCCEEEEecc
Confidence            322     2356677888988888874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.35  E-value=0.0044  Score=57.13  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=62.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh----c--ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC----K--QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell----~--~aDvVil~lPlt  107 (274)
                      .|++|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+..+      ++.+.+    .  ..|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            589999999999999999999999997777765544444 566676431      232222    1  5899999887 2


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.     -...++.++++..++.++.
T Consensus       268 ~~-----~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 AG-----LGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             SC-----HHHHHHHEEEEEEEEEECC
T ss_pred             HH-----HHHHHHHhhcCCEEEEEec
Confidence            22     2356677888988888874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.35  E-value=0.0041  Score=56.82  Aligned_cols=88  Identities=15%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHHHh----c--ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDLC----K--QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~ell----~--~aDvVil~lPl  106 (274)
                      -.|++|.|+|. |.||..+++.++.+|+++++.+.+..+.+ +.+.|+..+     ++.+.+    .  ..|+|+.++..
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            35899999998 99999999999999998777776555544 556666432     232222    1  48999998864


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +     .-...++.++++..++.++.
T Consensus       238 -~-----~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          238 -P-----AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             -------CHHHHHHTEEEEEEEEEC--
T ss_pred             -h-----HHHHHHHhhcCCCEEEEEEc
Confidence             2     12467778899999998874

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.33  E-value=0.0094  Score=54.54  Aligned_cols=97  Identities=15%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh---h------cCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD---K------RGAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~---~------~g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ..++|+|||.|.+|.++|..|...|.  +++.+|....+..  +.   .      ..... .+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            44799999999999999999876563  5667765432111  11   1      11111 1456779999999999975


Q ss_pred             Ccc---cH--------Hhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         107 TPD---TH--------HLIN--RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       107 t~~---T~--------~li~--~~~l~~mk~gailINv~RG~iVde  139 (274)
                      ...   ++        .++.  .+.+....|++++|+++  .++|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  128 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDI  128 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHH
Confidence            422   11        1121  12333447899999975  45544

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.32  E-value=0.02  Score=53.02  Aligned_cols=100  Identities=15%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVil~  103 (274)
                      .+.|.+|+++|=|  ++..+++..+..+|+++.+..+..-.+.          +.+.|..   ..+++|+++.+|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            5899999999985  9999999999999997777665432211          1144543   24899999999999984


Q ss_pred             CCC-------Ccc-----cHHhccHHHHhcC-CCCcEEEEcC---CCchhc
Q psy3240         104 SAL-------TPD-----THHLINRARLESM-KPGAILINTS---RGQLVD  138 (274)
Q Consensus       104 lPl-------t~~-----T~~li~~~~l~~m-k~gailINv~---RG~iVd  138 (274)
                      .=.       .++     ...-++.+.++.+ ||+++|.-+.   ||.=|+
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~  294 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVT  294 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBC
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccC
Confidence            331       111     1234688999999 9999999986   455343

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.32  E-value=0.019  Score=53.31  Aligned_cols=85  Identities=18%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCC-CeEEEEeCCCCChh-Hh-----hc---CCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-AD-----KR---GAEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~-----~~---g~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .+|+|+| .|.||+.+++.|.... ++++...++..... ..     -.   .....++++ +..+|+|+.|+|.... +
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 7999999999997654 35455444332211 11     01   112224444 5789999999996432 2


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                      ... ...   ++.|+.+|+.|.
T Consensus        83 ~~a-~~~---~~aG~~VId~Sa  100 (345)
T 2ozp_A           83 REF-DRY---SALAPVLVDLSA  100 (345)
T ss_dssp             HTH-HHH---HTTCSEEEECSS
T ss_pred             HHH-HHH---HHCCCEEEEcCc
Confidence            222 122   366888999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.31  E-value=0.0031  Score=58.15  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|++|.|+|.|.+|...++.++.+|++ +++.+.+..+.+ +++.|+..+      ++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            589999999999999999999999994 566655444434 566676421      3333332     379999988632


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.     -...++.++++..++.++-
T Consensus       270 ~~-----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 EI-----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HH-----HHHHHHTEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEeCC
Confidence            11     2456788899999998875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.28  E-value=0.0048  Score=56.69  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c------CCcc-cCHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R------GAEH-TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~------g~~~-~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|+|||.|.+|.+++..|...+.  +.+.+|....+..  +..  .      .... .+..+.++.||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            689999999999999999876554  5667775432222  111  1      1111 2456779999999999875322


Q ss_pred             c-----------HHhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         110 T-----------HHLIN--RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       110 T-----------~~li~--~~~l~~mk~gailINv~RG~iVde  139 (274)
                      -           ..++.  .+.+....|++++++++  .++|.
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  126 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDI  126 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHH
Confidence            1           11221  12333447899999983  45544

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.28  E-value=0.0038  Score=58.45  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             CCCEEEEEccCh---HHHHHHHHHccCC-CeEEE-EeCCCCC-hh--HhhcCCc---c-cCHHHHhcc-------cCEEE
Q psy3240          41 QNSTVGIVGCGR---IGLSVLEKLIPYK-VSKFL-YTSRSKK-PE--ADKRGAE---H-TNIDDLCKQ-------SDFII  101 (274)
Q Consensus        41 ~gktVGIIGlG~---IG~~iA~~L~~~G-~~vv~-~~~r~~~-~~--a~~~g~~---~-~sl~ell~~-------aDvVi  101 (274)
                      +-.+|||||+|.   ||+..+..++..+ ++++. +.++... ..  +.+.|+.   . .+++++++.       .|+|+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence            346899999999   9999998887654 55554 4444332 22  4566773   2 489999975       89999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHhhhhhhhhee
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINT-SRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv-~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      +++|......  +-...++.=|  .+++.- -.-.+-+.++|++..++.|+.+
T Consensus        91 i~tp~~~H~~--~~~~al~aGk--hVl~EKPla~~~~ea~~l~~~a~~~g~~~  139 (398)
T 3dty_A           91 IATPNGTHYS--ITKAALEAGL--HVVCEKPLCFTVEQAENLRELSHKHNRIV  139 (398)
T ss_dssp             EESCGGGHHH--HHHHHHHTTC--EEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             ECCCcHHHHH--HHHHHHHCCC--eEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence            9999643322  2223333211  233331 1223345666666666666543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.27  E-value=0.019  Score=52.16  Aligned_cols=109  Identities=12%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhc--c-cCEEEEcCCCCcccHHhccH
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCK--Q-SDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~--~-aDvVil~lPlt~~T~~li~~  116 (274)
                      ..++.|+|. |++|+.+++.++..|++.+...+ +.+....-.|+.. .+++|+..  . .|++++++|. +.+...+. 
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~Vn-P~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v~-   89 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVT-PGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAVY-   89 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC-TTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeC-CCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHHH-
Confidence            345777798 99999999999988986332223 2211111135543 48999887  5 9999999995 44444443 


Q ss_pred             HHHhcCCCCcEEEEcCCCc-hhcHHHHHhhhhhhhheeeh
Q psy3240         117 ARLESMKPGAILINTSRGQ-LVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~-iVde~aL~~~L~~~~i~~~D  155 (274)
                      +..+. .... +|..+.|= ..+++.|.+..++.++.++.
T Consensus        90 ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~viG  127 (297)
T 2yv2_A           90 EAVDA-GIRL-VVVITEGIPVHDTMRFVNYARQKGATIIG  127 (297)
T ss_dssp             HHHHT-TCSE-EEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             HHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence            23332 2222 44444442 23567888888888886663

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.27  E-value=0.0058  Score=58.76  Aligned_cols=70  Identities=11%  Similarity=0.004  Sum_probs=49.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H--hhcCCccc--CH-HHHhcccCEEEEcCCCCc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A--DKRGAEHT--NI-DDLCKQSDFIIITSALTP  108 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a--~~~g~~~~--sl-~ell~~aDvVil~lPlt~  108 (274)
                      -+++|++|.|||.|.+|.+.++.|...|++++++++...... .  .+.++...  .+ ++.+..+|+|+.+. ..+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at-~~~   83 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT-DDD   83 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC-SCH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcC-CCH
Confidence            478999999999999999999999999998888887543322 1  11234332  22 33466899888854 444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.23  E-value=0.0035  Score=57.18  Aligned_cols=88  Identities=13%  Similarity=0.107  Sum_probs=62.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh-HhhcCCccc-CHHH------Hhc---ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE-ADKRGAEHT-NIDD------LCK---QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~-a~~~g~~~~-sl~e------ll~---~aDvVil~lPlt  107 (274)
                      .|++|.|+|.|.+|...++.++.+  |+++++.+.+..+.+ +++.|+..+ +..+      .+.   ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            789999999999999999999998  997655554433333 566777542 3221      122   579999988642


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..    + ...++.++++..++.++.
T Consensus       250 ~~----~-~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          250 ET----T-YNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HH----H-HHHHHHEEEEEEEEECCC
T ss_pred             HH----H-HHHHHHhhcCCEEEEeCC
Confidence            11    1 355677889989998874

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.20  E-value=0.015  Score=54.23  Aligned_cols=97  Identities=14%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             CCCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh--H--------hhcCCc---ccCHHHHhcccCEEE
Q psy3240          37 GPALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE--A--------DKRGAE---HTNIDDLCKQSDFII  101 (274)
Q Consensus        37 g~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a--------~~~g~~---~~sl~ell~~aDvVi  101 (274)
                      |..+.|.+|+++|=|  +++.+++..+..+|+++.+..+..-.+.  .        .+.|..   ..+++|+++.+|||.
T Consensus       150 g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvy  229 (335)
T 1dxh_A          150 DKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH  229 (335)
T ss_dssp             SSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEE
Confidence            436899999999985  9999999999999998777766443221  1        144543   248999999999999


Q ss_pred             EcCCCC--c-----c------cHHhccHHHHhcC-CCCcEEEEcCC
Q psy3240         102 ITSALT--P-----D------THHLINRARLESM-KPGAILINTSR  133 (274)
Q Consensus       102 l~lPlt--~-----~------T~~li~~~~l~~m-k~gailINv~R  133 (274)
                      .-+=..  .     .      ...-++.+.++.+ ||+++|.-+.=
T Consensus       230 td~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          230 TDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             ECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             eCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            844311  0     1      1134689999999 99999999864

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.20  E-value=0.011  Score=57.66  Aligned_cols=107  Identities=16%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh----H-hhcC-------CcccCHHHHh-ccc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE----A-DKRG-------AEHTNIDDLC-KQS   97 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~----a-~~~g-------~~~~sl~ell-~~a   97 (274)
                      +|+|+||.|-|+|++|+..|+.|...|++++...+...        ...    . ...|       .+..+ ++++ ..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence            68999999999999999999999999998877554322        111    0 1111       11111 1333 469


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ||.+-|.-     .+.|+.+..++++ -.+++-.+-+. ...+| .+.|.++||.++
T Consensus       320 DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl~~  368 (501)
T 3mw9_A          320 DILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIMVI  368 (501)
T ss_dssp             SEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCEEE
T ss_pred             eEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCEEE
Confidence            99887654     3557777777775 45777777776 44444 456778887544

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.19  E-value=0.014  Score=54.09  Aligned_cols=65  Identities=23%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhhc------------------CCcc-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKR------------------GAEH-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~------------------g~~~-~sl~ell~~aDv   99 (274)
                      .+|||+|+|.||+.+++.|.. -+++++...++.....   +...                  +... .+.++++..+|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999875 4676655554432211   1111                  1111 156677788999


Q ss_pred             EEEcCCCC
Q psy3240         100 IIITSALT  107 (274)
Q Consensus       100 Vil~lPlt  107 (274)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999964

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.19  E-value=0.0077  Score=55.22  Aligned_cols=86  Identities=21%  Similarity=0.310  Sum_probs=54.1

Q ss_pred             CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCCh--h--HhhcCCcc--cCHHHHhc-----ccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKP--E--ADKRGAEH--TNIDDLCK-----QSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~--~--a~~~g~~~--~sl~ell~-----~aDvVil~lPlt~~  109 (274)
                      .+|||||+|.||+.+++.+..  -+++.+...++....  .  +...|...  .+.+++++     ..|+|+.++|. ..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~-~~   83 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA-SA   83 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH-HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh-HH
Confidence            589999999999999999943  466555555544332  2  45667642  35677754     58999999993 22


Q ss_pred             cHHhccHHHHhcCCCCcEEEEc
Q psy3240         110 THHLINRARLESMKPGAILINT  131 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv  131 (274)
                      ...+ -...++. ++|..+++.
T Consensus        84 h~~~-a~~al~a-~~Gk~Vi~e  103 (312)
T 1nvm_B           84 HVQN-EALLRQA-KPGIRLIDL  103 (312)
T ss_dssp             HHHH-HHHHHHH-CTTCEEEEC
T ss_pred             HHHH-HHHHHHh-CCCCEEEEc
Confidence            2222 1223322 337777773

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.18  E-value=0.0087  Score=54.45  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lP  105 (274)
                      -.|++|.|+|.| .||..+++.++..|+++++.+.+..+.+ +.+.|+...      ++.+.+      ...|+|+.++.
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            358999999997 9999999999999998777776665555 666676421      333322      25899999876


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . +.+     .+.+..++++..++.++-
T Consensus       223 ~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          223 G-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             H-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             C-hhH-----HHHHHHhcCCCEEEEEee
Confidence            3 221     234577899999999874

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.17  E-value=0.0037  Score=52.81  Aligned_cols=90  Identities=13%  Similarity=0.247  Sum_probs=57.1

Q ss_pred             CEEEEEc-cChHHHHHHHHHc-cCCCeEEEEeCCCC-Chh-H--hhcCCc-----c---cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVG-CGRIGLSVLEKLI-PYKVSKFLYTSRSK-KPE-A--DKRGAE-----H---TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~-~~G~~vv~~~~r~~-~~~-a--~~~g~~-----~---~sl~ell~~aDvVil~lPlt~  108 (274)
                      |+|.|.| .|.||+.+++.|. ..|+++++.+++.. +.. .  ...++.     .   .+++++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            6799999 5999999999999 89998777765533 211 1  111221     1   145667889999999886431


Q ss_pred             ccHHhccHHHHhcCCC-C-cEEEEcCCCch
Q psy3240         109 DTHHLINRARLESMKP-G-AILINTSRGQL  136 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~-g-ailINv~RG~i  136 (274)
                       ..   ....++.|++ + ..||++|+...
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence             11   3334444432 2 36888776543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.16  E-value=0.0018  Score=60.18  Aligned_cols=96  Identities=13%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hcC--------Ccc-cCHHHHhcccCEEEEcCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KRG--------AEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~g--------~~~-~sl~ell~~aDvVil~lP  105 (274)
                      ..++|+|||.|.||..+|..+...|.  +++.+|....+..  +.  ..+        +.. .+.++ ++.||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999987665  6677776433222  11  111        111 25555 899999999865


Q ss_pred             CCc---ccH--------HhccH--HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         106 LTP---DTH--------HLINR--ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       106 lt~---~T~--------~li~~--~~l~~mk~gailINv~RG~iVde  139 (274)
                      ...   .+|        .++..  +.+....|++++++++  .++|.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt--NPvdi  143 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP--ELGTD  143 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC--CccHH
Confidence            321   111        11210  2333447999999998  44443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.16  E-value=0.013  Score=52.75  Aligned_cols=112  Identities=14%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCc----------
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTP----------  108 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~----------  108 (274)
                      ++|++|.++|........++.|...|.++... ..+.. .....|+... ++.+.++++|+|+...|...          
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a   82 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLV-GFDQL-DHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS   82 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEE-SCTTS-SCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-ecccc-ccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence            67889999999999999999999999965443 22111 1112233332 46777889999998555321          


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      .+...++++.++.++++.+++ ++    +|..++.++++++|+....+-+
T Consensus        83 ~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~v~~~~~  127 (300)
T 2rir_A           83 NEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRKLVKLFE  127 (300)
T ss_dssp             SSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCCEEEGGG
T ss_pred             cCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCEEEeecC
Confidence            122336788899999998887 43    3667777778888988877554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.16  E-value=0.01  Score=49.92  Aligned_cols=65  Identities=14%  Similarity=0.258  Sum_probs=45.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-----c---cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-----H---TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-----~---~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|.|.| .|.||+.+++.|...|.++++.+++..+......++.     .   .++.++++.+|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            7899999 5999999999999999977776654332211101111     1   24667888999999887654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.15  E-value=0.0051  Score=56.47  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             CCCEEEEE-ccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIV-GCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGII-GlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|++|.|+ |.|.||..+++.++..|+++++.+.+..+.+ +.+.|+...      ++.+.+.     ..|+|+.++.. 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            68999999 6899999999999999998777765544444 555666421      3333332     48999998864 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +     .-...++.++++..++.++.
T Consensus       246 ~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          246 A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhccCCEEEEEEe
Confidence            2     22456788899999999874

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.15  E-value=0.022  Score=53.11  Aligned_cols=102  Identities=14%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--H--------hhcCCc--c-cCHHHHhcccCEEEE
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A--------DKRGAE--H-TNIDDLCKQSDFIII  102 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a--------~~~g~~--~-~sl~ell~~aDvVil  102 (274)
                      |..+.|++|++|| .+++..+++..+..+|+++.+..+..-.+.  .        ...|..  . .+++ +++.+|+|..
T Consensus       170 G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvyt  248 (339)
T 4a8t_A          170 GKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYT  248 (339)
T ss_dssp             TCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEE
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEe
Confidence            4369999999999 589999999999999998777766543221  1        223543  2 3888 9999999997


Q ss_pred             cC--CC--Cccc----------HHhccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         103 TS--AL--TPDT----------HHLINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       103 ~l--Pl--t~~T----------~~li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                      -+  ..  .++.          ..-++.+.++.+||+++|.-+.   ||.=|+.
T Consensus       249 d~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~  302 (339)
T 4a8t_A          249 DVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTD  302 (339)
T ss_dssp             CCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCH
T ss_pred             cCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCH
Confidence            33  11  1111          1346888999999999999986   5654443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.14  E-value=0.019  Score=52.40  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCC--CeEEEEeCCCCChhHhh--cC-----Ccc----cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADK--RG-----AEH----TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~--~g-----~~~----~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|+|+|. |.+|..++..|...|  .+++.+|.......+.+  ..     +..    .++++.++.||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999998766  45677776541111211  11     111    257778999999999975432


Q ss_pred             c---cH--------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHHH
Q psy3240         109 D---TH--------HLIN--RARLESMKPGAILINTSRGQLVDQEA  141 (274)
Q Consensus       109 ~---T~--------~li~--~~~l~~mk~gailINv~RG~iVde~a  141 (274)
                      .   ++        .++.  .+.+....|++++|++  ..++|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            1   11        1111  0122333588999997  45666543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.14  E-value=0.0087  Score=54.90  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=62.5

Q ss_pred             CCCEEEEEccChHHHHH-HHHH-ccCCCe-EEEEeCCCC---Chh-HhhcCCccc-----CHHHHhc----ccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSV-LEKL-IPYKVS-KFLYTSRSK---KPE-ADKRGAEHT-----NIDDLCK----QSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~i-A~~L-~~~G~~-vv~~~~r~~---~~~-a~~~g~~~~-----sl~ell~----~aDvVil~l  104 (274)
                      .+++|.|+|.|.+|... ++.+ +.+|++ +++.+++..   +.+ +++.|+..+     ++.+ +.    ..|+|+-++
T Consensus       172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~  250 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEAT  250 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECC
Confidence            34899999999999999 9999 999997 666666554   444 667776432     3333 22    479999988


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      .....     -...++.++++..++.++..
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          251 GFPKH-----AIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             CCHHH-----HHHHHHHEEEEEEEEECCCC
T ss_pred             CChHH-----HHHHHHHHhcCCEEEEEeCC
Confidence            64211     13566778899899988753

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.13  E-value=0.018  Score=55.60  Aligned_cols=111  Identities=14%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-------CC--h---h----Hh------------hcCCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-------KK--P---E----AD------------KRGAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-------~~--~---~----a~------------~~g~~~~   88 (274)
                      |.+++|++|.|.|+|++|+.+|+.|...|++++...+..       .-  +   .    .+            ..+++..
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            578999999999999999999999999999877644321       00  0   0    00            0122222


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCC-CC-cEEEEcCCCchhcHHHHHhhhhhh-hheee
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMK-PG-AILINTSRGQLVDQEALIDFIADI-RVISI  154 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk-~g-ailINv~RG~iVde~aL~~~L~~~-~i~~~  154 (274)
                      +.++++ ..||+++-|..     .+.|+.+..+.++ .| .+++--+-+.+ ..+|- +.|.++ |+.++
T Consensus       305 ~~~e~~~~~~Dil~P~A~-----~~~I~~~na~~l~a~g~kiV~EgAN~p~-T~eA~-~~l~~~~Gi~~~  367 (449)
T 1bgv_A          305 PGEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPT-TNEAL-RFLMQQPNMVVA  367 (449)
T ss_dssp             ETCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHHH-HHHHHCTTCEEE
T ss_pred             CchhhhcCCcceeecccc-----ccccchhhHHHHHhcCCeEEEeCCCCcC-CHHHH-HHHHHcCCEEEE
Confidence            222233 36888776653     2445555555554 23 25555555554 44443 557777 66544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.13  E-value=0.0058  Score=56.34  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hcC------Ccc-cCHHHHhcccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KRG------AEH-TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~g------~~~-~sl~ell~~aDvVil~lPlt  107 (274)
                      ..++|+|||.|.+|.+++..|...+.  +.+.+|....+..  +.  ...      +.. .+..+.++.||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            34799999999999999999875553  5667776432222  11  111      111 24567799999999998753


Q ss_pred             ccc---H--------Hhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         108 PDT---H--------HLIN--RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       108 ~~T---~--------~li~--~~~l~~mk~gailINv~RG~iVde  139 (274)
                      ..-   +        .++.  .+.+....|+++++++  ..++|.
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  130 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDI  130 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHH
Confidence            221   1        1111  0123333689999998  345544

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.12  E-value=0.0092  Score=55.43  Aligned_cols=86  Identities=14%  Similarity=0.143  Sum_probs=52.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCC-CeEEEEe-CCCCC-hh-HhhcC-------------Ccc--cCHHHHhc-ccCEEE
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYK-VSKFLYT-SRSKK-PE-ADKRG-------------AEH--TNIDDLCK-QSDFII  101 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~~-~r~~~-~~-a~~~g-------------~~~--~sl~ell~-~aDvVi  101 (274)
                      .+|+|+| .|.||+.+++.|.... ++++... ++... .. ....+             ...  .+++++++ .+|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 8999999999997654 4444443 32221 11 11111             111  24555556 899999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +|+|... +.... ...   ++.|+.+|+.+.
T Consensus        89 ~atp~~~-~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDL-AKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             ECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence            9998532 22222 122   246888999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.11  E-value=0.0045  Score=56.11  Aligned_cols=90  Identities=14%  Similarity=0.034  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcCCccc------CHHHHhc-----ccCEEEEcCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRGAEHT------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g~~~~------sl~ell~-----~aDvVil~lP  105 (274)
                      -.|++|.|+|. |.||..+++.++..|+++++.+++..+.+ + ++.|+...      ++.+.+.     ..|+|+.++.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            35899999998 99999999999999997777665544433 4 56666421      3333332     4899998775


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      . +     .-...++.++++..++.++...
T Consensus       228 ~-~-----~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          228 G-E-----ILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECCCGG
T ss_pred             c-c-----hHHHHHHHHhhCCEEEEEeecc
Confidence            2 1     2346778899999999987644

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.09  E-value=0.021  Score=53.41  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCC-eEEEEeCCCCC-hhHh------hcCCcc--cCHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKV-SKFLYTSRSKK-PEAD------KRGAEH--TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~-~vv~~~~r~~~-~~a~------~~g~~~--~sl~ell~~aDvVil~lPlt~~  109 (274)
                      .-.+||||| .|..|+.+.+.|...-. +.....++... ....      ......  .+.++++.++|+|++|+|..  
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~--   89 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG--   89 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT--
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH--
Confidence            345899998 69999999999986543 33333333221 1111      112222  25566668899999999953  


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         110 THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG  134 (274)
                          ...+..+.+ .|+.+||.|..
T Consensus        90 ----~s~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           90 ----ASYDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             ----HHHHHHTTC-CSCEEEESSST
T ss_pred             ----HHHHHHHHh-CCCEEEECChh
Confidence                234566666 89999999853

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.09  E-value=0.0083  Score=55.25  Aligned_cols=94  Identities=20%  Similarity=0.300  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCcc---cCHHHHhcccCEEEEcCCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEH---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~---~sl~ell~~aDvVil~lPl  106 (274)
                      .+.|++|+++|=   |++..+++..+..+|+++.+..+..-.+.      +.+.|...   .+++|+++.+|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            589999999997   58999999999999997777665443221      22335542   4899999999999985532


Q ss_pred             Cc------cc-----HHhccHHHHhcCCCCcEEEEcC
Q psy3240         107 TP------DT-----HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~------~T-----~~li~~~~l~~mk~gailINv~  132 (274)
                      .+      +.     ..-++.+.++.+||+++|.-+.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            11      11     1235778888899999999886

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.08  E-value=0.025  Score=53.20  Aligned_cols=94  Identities=14%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCCh----h--------HhhcCCc--c-cCHHHHhcccCEEE
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKP----E--------ADKRGAE--H-TNIDDLCKQSDFII  101 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~----~--------a~~~g~~--~-~sl~ell~~aDvVi  101 (274)
                      .+.|++|++||=+  ++..+++..+..+|+++.+..+..-.+    .        +.+.|..  . .+++|+++.+|||.
T Consensus       177 ~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVy  256 (365)
T 4amu_A          177 NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIY  256 (365)
T ss_dssp             SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEE
Confidence            3899999999977  889999999999999877766644322    1        1233543  2 38999999999999


Q ss_pred             EcC--CCCccc-----------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         102 ITS--ALTPDT-----------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       102 l~l--Plt~~T-----------~~li~~~~l~~mk~gailINv~  132 (274)
                      .-+  ...++.           ..-++.+.++.+||+++|.-+.
T Consensus       257 td~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          257 TDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             ECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             ecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            832  112111           1236889999999999999886

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.06  E-value=0.0043  Score=56.05  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------C-HHHHhcccCEEEEcCCCCccc
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------N-IDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------s-l~ell~~aDvVil~lPlt~~T  110 (274)
                      -.|.+|.|+| .|.+|...++.++.+|+++++..+ ..+.+ +++.|+..+      + +.+.+...|+|+-++.. +  
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~--  226 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-D--  226 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-H--
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-H--
Confidence            3689999997 999999999999999997666653 33333 666777531      3 66666789999998863 1  


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCC
Q psy3240         111 HHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~R  133 (274)
                        .. ...++.++++..++.++.
T Consensus       227 --~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          227 --VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             --HH-HHHGGGEEEEEEEEECCS
T ss_pred             --HH-HHHHHhccCCCEEEEeCC
Confidence              12 567888999999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.05  E-value=0.013  Score=56.22  Aligned_cols=95  Identities=18%  Similarity=0.259  Sum_probs=65.6

Q ss_pred             CCCCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC--Cccc-CHHHHhcccCEEEEc
Q psy3240          37 GPALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG--AEHT-NIDDLCKQSDFIIIT  103 (274)
Q Consensus        37 g~~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g--~~~~-sl~ell~~aDvVil~  103 (274)
                      +..+.|++|+|+|+-          .=...+++.|...|+++.+||+..........+  +..+ ++++.++.+|.|+++
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            357899999999984          347899999999999888888765321122222  4444 788999999999998


Q ss_pred             CCCCcccHHhccHHH-HhcCCCCcEEEEcCCCc
Q psy3240         104 SALTPDTHHLINRAR-LESMKPGAILINTSRGQ  135 (274)
Q Consensus       104 lPlt~~T~~li~~~~-l~~mk~gailINv~RG~  135 (274)
                      ++-. +-+. ++.+. .+.|+ +.+++|+ |+-
T Consensus       393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             SCCG-GGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             cCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            8743 2222 34343 34465 5689996 543

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.05  E-value=0.013  Score=54.47  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=71.1

Q ss_pred             CCCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEE
Q psy3240          37 GPALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFII  101 (274)
Q Consensus        37 g~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVi  101 (274)
                      |..|.|.+|+++|=|  +++.+++..+..+|+++.+..+..-.+.          +.+.|..   ..+++|+++.+|||.
T Consensus       150 g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvy  229 (333)
T 1duv_G          150 GKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIY  229 (333)
T ss_dssp             TCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEE
T ss_pred             CCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEE
Confidence            446899999999975  9999999999999998777665432221          1145643   248999999999999


Q ss_pred             EcCCCC--c-----c------cHHhccHHHHhcC-CCCcEEEEcCC
Q psy3240         102 ITSALT--P-----D------THHLINRARLESM-KPGAILINTSR  133 (274)
Q Consensus       102 l~lPlt--~-----~------T~~li~~~~l~~m-k~gailINv~R  133 (274)
                      .-+=..  .     .      ...-++.+.++.+ ||+++|.-+.=
T Consensus       230 td~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          230 TDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             ECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             eCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            844311  0     0      1134689999999 99999999863

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.04  E-value=0.0097  Score=57.47  Aligned_cols=107  Identities=15%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---Hhhc-C----------------------Cc-ccCHHHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKR-G----------------------AE-HTNIDDLC   94 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~-g----------------------~~-~~sl~ell   94 (274)
                      .+|||||+|.||+.+++.+... +++++...++.....   +.+. |                      .. +.++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5799999999999999988754 676666666655332   2222 3                      11 23899999


Q ss_pred             c--ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE--EcCCCchhcHHHHHhhhhhhhheee
Q psy3240          95 K--QSDFIIITSALTPDTHHLINRARLESMKPGAILI--NTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        95 ~--~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI--Nv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      +  +.|+|+.++|... ...-+   .+..|+.|.-++  |.+ -.....+.|.+.-++.|+.+.
T Consensus       104 ~d~dIDaVviaTp~p~-~H~e~---a~~AL~AGKHVv~~nk~-l~~~eg~eL~~~A~e~Gvvl~  162 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-VGAET---GIAAIRNGKHLVMMNVE-ADVTIGPYLKAQADKQGVIYS  162 (446)
T ss_dssp             TCTTCCEEEECSCCHH-HHHHH---HHHHHHTTCEEEECCHH-HHHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCEEEEcCCChH-HHHHH---HHHHHHcCCcEEecCcc-cCHHHHHHHHHHHHHhCCeee
Confidence            7  4899999998532 11111   223344555555  432 111234566666666666543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.00  E-value=0.0045  Score=56.42  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCcc------cCHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEH------TNIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~------~sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|++|.|+|.|.+|..+++.++.+|+ ++++.+.+..+.+ +++. +..      .++.+.+.     ..|+|+-++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            78999999999999999999999999 7776664433322 3333 321      13333332     579999988642


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +.     -...++.|+++..++.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          243 AA-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEec
Confidence            22     1355677888888988875

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.99  E-value=0.0088  Score=54.62  Aligned_cols=94  Identities=18%  Similarity=0.324  Sum_probs=57.2

Q ss_pred             EEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh---h----c--CC--cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD---K----R--GA--EH-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~---~----~--g~--~~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      ||+|||.|.||..+|..+...|. +++.+|....+..  +.   .    .  ..  .. .+. +.++.||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998875565 4777776544322  11   1    1  21  12 254 67899999999976532


Q ss_pred             c-----------cHHhccH--HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         109 D-----------THHLINR--ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       109 ~-----------T~~li~~--~~l~~mk~gailINv~RG~iVde~  140 (274)
                      .           +..++..  +.+....|++++|+++  .++|.-
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~  122 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT--NPVDAM  122 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHH
Confidence            1           1111110  1233335899999984  355443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.99  E-value=0.012  Score=56.78  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             CCEEEEEccChHHHHHHHHHcc----------CCCeEEEEeCCCCChh-HhhcCCc-ccCHHHHhc--ccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP----------YKVSKFLYTSRSKKPE-ADKRGAE-HTNIDDLCK--QSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~----------~G~~vv~~~~r~~~~~-a~~~g~~-~~sl~ell~--~aDvVil~lPlt  107 (274)
                      -.+|||||+|.||+.+++.++.          .+.+++...++..... ....+.. +.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            4589999999999999987752          4565666655544322 1112333 348999986  479999999963


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhee
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVIS  153 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~~  153 (274)
                      ..-..++    .+.|+.|.-++-.--.-.. ..+.|.+..+++|+.+
T Consensus        90 ~~h~~~~----~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l  132 (444)
T 3mtj_A           90 EPARELV----MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMV  132 (444)
T ss_dssp             TTHHHHH----HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hHHHHHH----HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeE
Confidence            2222222    2223445444433222112 3356666666666655

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.99  E-value=0.011  Score=53.53  Aligned_cols=88  Identities=14%  Similarity=0.031  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-------cCHHHHhc-----ccCEEEEcCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-------TNIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-------~sl~ell~-----~aDvVil~lP  105 (274)
                      -.|++|.|.|. |.||..+++.++..|+++++.+.+..+.+ +.+.|...       .++.+.+.     ..|+|+.++.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            35899999998 99999999999999997776665433333 44455431       12333332     4799988775


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . +    . -...++.++++..++.++.
T Consensus       224 ~-~----~-~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          224 G-E----F-LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             H-H----H-HHHHHTTEEEEEEEEECCC
T ss_pred             h-H----H-HHHHHHHHhcCCEEEEEec
Confidence            3 1    1 2466788899999998874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.98  E-value=0.0092  Score=55.36  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcCCccc---C---HH---HHh------cccCEEEEc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRGAEHT---N---ID---DLC------KQSDFIIIT  103 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g~~~~---s---l~---ell------~~aDvVil~  103 (274)
                      .|++|.|+|.|.+|...++.++.+| .++++.+.+..+.+ +++.|+..+   +   -+   +.+      ...|+|+-+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            4889999999999999999999999 57777765544444 566776432   1   11   111      147999998


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +...+..     ...++.++++..++.++.
T Consensus       275 ~g~~~~~-----~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          275 TGDSRAL-----LEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             SSCTTHH-----HHHHHHEEEEEEEEECCC
T ss_pred             CCCHHHH-----HHHHHHHhcCCEEEEEec
Confidence            8643221     345677888888888875

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.97  E-value=0.016  Score=53.48  Aligned_cols=105  Identities=16%  Similarity=0.271  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccC-CCeEEEEeCCCCChh------HhhcCCcc---cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE------ADKRGAEH---TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~------a~~~g~~~---~sl~ell~~aDvVil~lP  105 (274)
                      .+.|++|+++|=   |++..+++..+..+ |+++.+..+..-.+.      +.+.|...   .+++|+++.+|+|..-.=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            589999999997   59999999999999 998777665443221      22335542   389999999999998643


Q ss_pred             CCc----cc------HHhccHHHHhcCCCCcEEEEcC-CCchhcHHHHHh
Q psy3240         106 LTP----DT------HHLINRARLESMKPGAILINTS-RGQLVDQEALID  144 (274)
Q Consensus       106 lt~----~T------~~li~~~~l~~mk~gailINv~-RG~iVde~aL~~  144 (274)
                      -.+    +.      ..-++.+.++.+||+++|.-+. ||.=| .+++.+
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI-~~eV~d  279 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEI-ATDVDK  279 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCSCCSSSB-CHHHHT
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCee-cHHHhC
Confidence            111    11      2345788899999999999986 54433 334444

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.97  E-value=0.0068  Score=54.95  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lP  105 (274)
                      -.|++|.|+| .|.||..+++.++..|+++++.+++..+.+ +++.|+...      ++.+.+      ...|+|+.++.
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            3689999999 899999999999999998777766444444 566666421      333322      24799998876


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . +     .-...++.++++..++.++.
T Consensus       227 ~-~-----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          227 K-D-----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             G-G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             h-H-----HHHHHHHHhccCCEEEEEcC
Confidence            3 1     12456777899999999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.97  E-value=0.017  Score=54.64  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CH------------------------HH
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NI------------------------DD   92 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl------------------------~e   92 (274)
                      -.|++|.|+|. |.||..+++.++..|+++++.+.+..+.+ +++.|+..+ +.                        ++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            36899999998 99999999999999998777765443333 566776432 11                        11


Q ss_pred             H---h-cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          93 L---C-KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        93 l---l-~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +   . ...|+|+-++.. +    . -...+..++++..+|+++.
T Consensus       299 v~~~~g~g~Dvvid~~G~-~----~-~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGR-V----T-FGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHSSCCSEEEECSCH-H----H-HHHHHHHSCTTCEEEESCC
T ss_pred             HHHHhCCCceEEEECCCc-h----H-HHHHHHHHhcCCEEEEEec
Confidence            1   1 248999998763 1    1 2456778999999999975

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.96  E-value=0.013  Score=53.97  Aligned_cols=109  Identities=11%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             CEEEEEccChHHHHHHHHHccC--------CCeEEEEeCCCCChh-H--------h---hcCCc--cc---CHHHHh-cc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--------KVSKFLYTSRSKKPE-A--------D---KRGAE--HT---NIDDLC-KQ   96 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--------G~~vv~~~~r~~~~~-a--------~---~~g~~--~~---sl~ell-~~   96 (274)
                      .+|||||+|.||+.+++.++..        +++++...++..... .        .   ..++.  ..   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5799999999999999988653        355555555543211 1        0   11221  12   788887 35


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHhhhhhhhhe
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL-VDQEALIDFIADIRVI  152 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i-Vde~aL~~~L~~~~i~  152 (274)
                      .|+|+.++|.. .+-..--+-..+.|+.|.-+|-..-..+ ...+.|.+.-+++|+.
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999975 1111111122334455666665432222 2345666655555653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.95  E-value=0.0055  Score=55.51  Aligned_cols=38  Identities=26%  Similarity=0.435  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      -+|+|++|.|||.|.+|...++.|...|++++++++..
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            57999999999999999999999999999888887654

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.92  E-value=0.027  Score=52.86  Aligned_cols=102  Identities=13%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--H--------hhcCCc--c-cCHHHHhcccCEEEE
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A--------DKRGAE--H-TNIDDLCKQSDFIII  102 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a--------~~~g~~--~-~sl~ell~~aDvVil  102 (274)
                      |..+.|++|++|| .+++..+++..+..+|+++.+..+..-.+.  .        ...|..  . .+++ +++.+|||..
T Consensus       148 G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVyt  226 (355)
T 4a8p_A          148 GKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYT  226 (355)
T ss_dssp             TCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEE
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEe
Confidence            4368999999999 589999999999999997777766543321  1        223543  2 3888 9999999997


Q ss_pred             cC----CCCccc----------HHhccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         103 TS----ALTPDT----------HHLINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       103 ~l----Plt~~T----------~~li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                      -+    ....+.          ..-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       227 d~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~  280 (355)
T 4a8p_A          227 DVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTD  280 (355)
T ss_dssp             CCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCH
T ss_pred             cccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCH
Confidence            33    110110          1346888999999999999886   5654443

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.91  E-value=0.034  Score=52.12  Aligned_cols=95  Identities=13%  Similarity=0.152  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC-h-hH----h------hcCCc--c-cCHHHHhcccCEEE
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK-P-EA----D------KRGAE--H-TNIDDLCKQSDFII  101 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~-~-~a----~------~~g~~--~-~sl~ell~~aDvVi  101 (274)
                      ..|.|++|++||= -++..+++..+..+|+++.+..+..-. + ..    .      +.|..  . .+++|+++.+|||.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            3479999999995 478899999999999977776665432 1 11    1      11322  2 38999999999998


Q ss_pred             EcC--CCCcc--c--------HHhccHHHHhc--CCCCcEEEEcC
Q psy3240         102 ITS--ALTPD--T--------HHLINRARLES--MKPGAILINTS  132 (274)
Q Consensus       102 l~l--Plt~~--T--------~~li~~~~l~~--mk~gailINv~  132 (274)
                      .-.  +...+  .        ...++.+.++.  +|++++|.-+.
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            743  22111  1        12478899998  89999999886

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.90  E-value=0.034  Score=52.72  Aligned_cols=113  Identities=17%  Similarity=0.237  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++++|+|.|||+|..|.+.|+.|+..|.+++++|.+...+.   .. .|+...   ...+.+..+|.|++.-...+....
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            46789999999999999999999999998889988765432   22 465542   134566689998886433222111


Q ss_pred             ----------hccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240         113 ----------LINR-ARL-ESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       113 ----------li~~-~~l-~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                                ++.. +.+ ..++...+-|--+.|+.-...-+...|++.|..
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~  132 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN  132 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence                      1221 112 224444555555568877666666667776543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.90  E-value=0.032  Score=48.44  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEEcc-Ch--HHHHHHHHHccCCCeEEEEeCCCCChh-Hh----hc---CCc-----cc---CHHHHhc---
Q psy3240          38 PALQNSTVGIVGC-GR--IGLSVLEKLIPYKVSKFLYTSRSKKPE-AD----KR---GAE-----HT---NIDDLCK---   95 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~--IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~----~~---g~~-----~~---sl~ell~---   95 (274)
                      .+++||++.|.|. |.  ||+++|+.|...|+++++.+++..... ..    ..   .+.     ..   +++++++   
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence            4689999999997 56  999999999999998777765533222 11    11   111     11   2333443   


Q ss_pred             ----ccCEEEEcCCCCc----------ccHH--------------hccHHHHhcCCCCcEEEEcCCCc
Q psy3240          96 ----QSDFIIITSALTP----------DTHH--------------LINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        96 ----~aDvVil~lPlt~----------~T~~--------------li~~~~l~~mk~gailINv~RG~  135 (274)
                          ..|+++.+.....          .+..              .+....++.|+++..+||+++..
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  150 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG  150 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence                5699988765432          1111              02234677888888999998743

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.88  E-value=0.0074  Score=55.63  Aligned_cols=88  Identities=13%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|++|.|+| .|.||..+++.++..|+++++.+++..+.+ +.+.|+...      ++.+.++     ..|+|+.++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            589999999 799999999999999997666665433333 555666421      3333332     47999998863 


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                       .    .-...++.|+++..+|.++..
T Consensus       242 -~----~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          242 -A----MFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             -H----HHHHHHHHEEEEEEEEECCCG
T ss_pred             -H----HHHHHHHHHhcCCEEEEEeCC
Confidence             1    124567778888899988753

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.87  E-value=0.028  Score=52.23  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---Hhhc--------------------CCccc-CHHHHhccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKR--------------------GAEHT-NIDDLCKQS   97 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~--------------------g~~~~-sl~ell~~a   97 (274)
                      .+|||+|+|.||+.+++.|... +++++...+......   ....                    +.... +.++++..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999998765 576655544322211   1111                    11111 345566789


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      |+|+.|+|.... ....  + -..++.|+.+|..+
T Consensus        83 DiV~eatg~~~s-~~~a--~-~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIG-KQNL--E-NIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHH-HHHH--H-HTTTTTTCEEEECT
T ss_pred             CEEEECCCcccc-HHHH--H-HHHHHCCCEEEECC
Confidence            999999985321 1111  1 24567777766544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.86  E-value=0.026  Score=47.42  Aligned_cols=66  Identities=20%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhH-h-----hcCCcc--cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-D-----KRGAEH--TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~-----~~g~~~--~sl~ell~~aDvVil~lPlt~  108 (274)
                      ++|.|.| .|.||+.+++.|.+.|.++++.+++..+... .     ...+..  .++.++++.+|+|+.+.....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~   75 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG   75 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence            4789999 7999999999999999987777765432211 0     111111  135567888999999887654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.85  E-value=0.02  Score=51.89  Aligned_cols=89  Identities=24%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEE-eCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY-TSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~-~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lP  105 (274)
                      ..|++|.|.|.|.+|...++.++.+|+++++. +.+..+.+ ++++|+..+      +..+..      ...|+|+-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            46899999999999999999999999876554 44333334 677887532      333332      23688888775


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .. .+   + ...++.++++..++.++.
T Consensus       239 ~~-~~---~-~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          239 VP-QT---V-ELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SH-HH---H-HHHHHHCCTTCEEEECCC
T ss_pred             cc-ch---h-hhhhheecCCeEEEEEec
Confidence            32 21   2 345677899999988774

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.85  E-value=0.028  Score=51.86  Aligned_cols=91  Identities=18%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh---cccCEEEEcCCCCc
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC---KQSDFIIITSALTP  108 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell---~~aDvVil~lPlt~  108 (274)
                      -.|++|.|+| .|.||..+++.++..|+++++.+ +..+.+ +++.|+..+      ++.+.+   ...|+|+-++....
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~  260 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGST  260 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChh
Confidence            3689999999 79999999999999999776665 334333 666776431      333332   35899999886431


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      .+    -...+..++++..+|.++...
T Consensus       261 ~~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          261 ET----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             HH----HGGGGBCSSSCCEEEESCCSH
T ss_pred             hh----hHHHHHhhcCCcEEEEeCCCc
Confidence            11    124567789999999998643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.84  E-value=0.0079  Score=54.93  Aligned_cols=88  Identities=19%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             CCCEEEEE-ccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHHHhc-----ccCEEEEcCCCCc
Q psy3240          41 QNSTVGIV-GCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDLCK-----QSDFIIITSALTP  108 (274)
Q Consensus        41 ~gktVGII-GlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~ell~-----~aDvVil~lPlt~  108 (274)
                      .|++|.|+ |.|.||...++.++..|+++++.+.+..+.+ +++.|+..+     ++.+.+.     ..|+|+-++... 
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~-  228 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTD-  228 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHH-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCch-
Confidence            68999999 7999999999999999997666655443333 556676432     2333322     478888877521 


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .    .-...++.++++..+|.++.
T Consensus       229 ~----~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          229 M----YYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             H----HHHHHHHHEEEEEEEEESSC
T ss_pred             H----HHHHHHHHhccCCEEEEECC
Confidence            1    11345667888888888753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.82  E-value=0.0072  Score=54.65  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|++|.|+| .|.||..+++.++..|+++++.+++..+.+ +.+.|+...      ++.+.+      ...|+|+.++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 799999999999999997777765444433 556665421      333322      258999998763


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +     .-...++.++++..++.++.
T Consensus       220 -~-----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          220 -D-----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             -G-----GHHHHHTTEEEEEEEEECCC
T ss_pred             -H-----HHHHHHHHhcCCCEEEEEec
Confidence             1     12466788999999999875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.80  E-value=0.0054  Score=56.92  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             CEEEEEccChHHHHHHHHHccC---------CCeEEEEeCCCCChhHhhcCC--cccCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY---------KVSKFLYTSRSKKPEADKRGA--EHTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~---------G~~vv~~~~r~~~~~a~~~g~--~~~sl~ell~~aDvVil~lPlt  107 (274)
                      .+|||||+|.||+.+++.++..         +++++...++..... ...+.  ...++++++ +.|+|+.|+|..
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-~~~~~~~~~~d~~~ll-~iDvVve~t~~~   77 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-RAIPQELLRAEPFDLL-EADLVVEAMGGV   77 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-CSSCGGGEESSCCCCT-TCSEEEECCCCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-hccCcccccCCHHHHh-CCCEEEECCCCc
Confidence            4799999999999999988654         455555555443221 11111  123778888 899999999864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.79  E-value=0.054  Score=48.17  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--H----hhcCCc-------cc---CHHHHhc-----
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A----DKRGAE-------HT---NIDDLCK-----   95 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a----~~~g~~-------~~---sl~ell~-----   95 (274)
                      .+++||++.|.|. |-||+++|+.|...|+++++.+++.....  .    ...+..       ..   +.+++++     
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999999985 89999999999999998777766543211  1    111211       11   2233333     


Q ss_pred             --ccCEEEEcCCCCcc-------c----HHh----------ccHHHHhcCCCCcEEEEcCCCc
Q psy3240          96 --QSDFIIITSALTPD-------T----HHL----------INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        96 --~aDvVil~lPlt~~-------T----~~l----------i~~~~l~~mk~gailINv~RG~  135 (274)
                        ..|+++.+.-....       +    ..+          +.+..++.|+++..+||+++..
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence              57999987542210       1    111          1234577888888999998754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.78  E-value=0.012  Score=52.80  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc-ccCHHHHhcccCEEEEcCCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE-HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~-~~sl~ell~~aDvVil~lPlt  107 (274)
                      .++.+|+|.|.|. |.||+.+++.|...|.++++.+++.....  .....+. ..++.++++.+|+|+.+....
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            6789999999997 99999999999999998888776654311  1111111 124667888999999877543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.78  E-value=0.035  Score=49.53  Aligned_cols=98  Identities=13%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeCCCCChh-H----hhcC-Cc-----cc---CHHHHhc-----
Q psy3240          38 PALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTSRSKKPE-A----DKRG-AE-----HT---NIDDLCK-----   95 (274)
Q Consensus        38 ~~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~~~g-~~-----~~---sl~ell~-----   95 (274)
                      ..+.||++.|.|.+   .||+++|+.|...|+++++.+++..... .    ...+ +.     ..   +++++++     
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            57899999999985   8999999999999998777766543222 1    1111 11     11   2333443     


Q ss_pred             --ccCEEEEcCCCCc----------ccH----Hh----------ccHHHHhcCCCCcEEEEcCCCc
Q psy3240          96 --QSDFIIITSALTP----------DTH----HL----------INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        96 --~aDvVil~lPlt~----------~T~----~l----------i~~~~l~~mk~gailINv~RG~  135 (274)
                        ..|+++.+.-...          .+.    .+          +.+..++.|+++..+||+++..
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~  171 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYG  171 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehh
Confidence              4699998875432          111    01          1234567788888999988743

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.76  E-value=0.032  Score=51.44  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPl  106 (274)
                      -.|++|.|+|. |.+|...++.++..|+++++.. +..+.+ +++.|+..+      ++.+.+.     ..|+|+-++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            47899999999 8999999999999999766654 333444 677777531      3333322     37999988864


Q ss_pred             CcccHHhccHHHHhcC-CCCcEEEEcC
Q psy3240         107 TPDTHHLINRARLESM-KPGAILINTS  132 (274)
Q Consensus       107 t~~T~~li~~~~l~~m-k~gailINv~  132 (274)
                      ...    + ...++.+ +++..++.++
T Consensus       242 ~~~----~-~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          242 VES----T-TFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHH----H-HHHHHHSCTTCEEEEESS
T ss_pred             hHH----H-HHHHHHhhcCCCEEEEEe
Confidence            221    1 2455667 5888888887

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.74  E-value=0.041  Score=50.91  Aligned_cols=94  Identities=10%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCCh--hH----h----hcCC--c-ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKP--EA----D----KRGA--E-HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~--~a----~----~~g~--~-~~sl~ell~~aDvVil~l  104 (274)
                      .+.|.+|++||= .++.++++..+..+|+++.+..+..-.+  ..    .    +.|.  . ..+++|+++.+|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            589999999996 4689999999999999877776655421  11    1    2343  2 248999999999999943


Q ss_pred             ----CCCccc--------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         105 ----ALTPDT--------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       105 ----Plt~~T--------~~li~~~~l~~mk~gailINv~  132 (274)
                          ....+.        ..-++.+.++.+||+++|.-+.
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence                111111        1336889999999999999986

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.74  E-value=0.012  Score=54.47  Aligned_cols=98  Identities=18%  Similarity=0.320  Sum_probs=60.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh--hcC-----C-c--cc-CHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD--KRG-----A-E--HT-NIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~--~~g-----~-~--~~-sl~ell~~aDvVil~  103 (274)
                      ....++|+|||.|.||..+|..+...|.  +++.+|....+..  +.  ...     . .  .. +.+ .++.||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            4567899999999999999998876665  5677775433222  11  111     1 1  11 444 58999999998


Q ss_pred             CCCCc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         104 SALTP---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       104 lPlt~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                      .....   .+|. ++  |.       +.+....|++++++++  .++|.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvdi  141 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVDI  141 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHHH
Confidence            64321   1221 22  11       2333447899999998  44543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.74  E-value=0.0058  Score=54.94  Aligned_cols=86  Identities=21%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      .|++|.|+|.|.+|...++.++.+|+++++.+ +..+.+ +++.|+..+  +.+++-...|+|+-++.. +.+     ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HH
Confidence            68999999999999999999999999777766 555555 667776543  322223457999988764 222     24


Q ss_pred             HHhcCCCCcEEEEcCC
Q psy3240         118 RLESMKPGAILINTSR  133 (274)
Q Consensus       118 ~l~~mk~gailINv~R  133 (274)
                      .++.++++..++.++-
T Consensus       215 ~~~~l~~~G~~v~~g~  230 (315)
T 3goh_A          215 LVPSLKANGHIICIQD  230 (315)
T ss_dssp             TGGGEEEEEEEEEECC
T ss_pred             HHHHhcCCCEEEEEeC
Confidence            5677889999888853

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.72  E-value=0.017  Score=52.82  Aligned_cols=95  Identities=19%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh--c------CCcc-cCHHHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK--R------GAEH-TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~--~------g~~~-~sl~ell~~aDvVil~lPlt~~  109 (274)
                      +||+|||.|.+|.+++..|...+  -+.+.+|....+..  +.+  .      .... .+..+.++.||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999987655  35666765432222  111  1      1111 1346679999999999875432


Q ss_pred             ---c--------HHhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         110 ---T--------HHLIN--RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       110 ---T--------~~li~--~~~l~~mk~gailINv~RG~iVde  139 (274)
                         +        ..++.  .+.+....|++++++++  .++|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  121 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDV  121 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHH
Confidence               1        11111  01233337899999984  45544

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.72  E-value=0.027  Score=51.43  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCccc---
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDT---  110 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T---  110 (274)
                      .+.|.+|+++|=   +++.++.+..+..+|+++.+..+..-.+. ..+.|+.. .+++|+++.+|+|.. +-..-+-   
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q~er~~~  221 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQKERQKE  221 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCCTHHHHT
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcccCcccc
Confidence            589999999996   89999999999999997777665443322 22345543 489999999999999 6543221   


Q ss_pred             -----------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         111 -----------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 -----------~~li~~~~l~~mk~gailINv~  132 (274)
                                 ..-++.+.++.+|   +|.-+.
T Consensus       222 ~~~~~~~~~~~~y~v~~~~l~~a~---i~mH~l  251 (291)
T 3d6n_B          222 NYIPSESSYFKQFGLTKERFEKVK---LYMHPG  251 (291)
T ss_dssp             TSSSCHHHHHHHHSBCHHHHTTCC---CEECSS
T ss_pred             ccchhHHHHHhhcCcCHHHHHhcc---cccCCC
Confidence                       1235677777665   665554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.71  E-value=0.014  Score=53.45  Aligned_cols=95  Identities=19%  Similarity=0.201  Sum_probs=60.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCCh--h-Hhh-cCCc------c---cCHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKP--E-ADK-RGAE------H---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~--~-a~~-~g~~------~---~sl~ell~~aDvVil~lPl  106 (274)
                      .+++|.|.| .|.||+.+++.|...|.++++.+++....  . ... .++.      .   .++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            468899999 59999999999998899887777655543  1 111 1221      1   1356778899999977654


Q ss_pred             CcccHHhccHHHHhcCCC-C--cEEEEcCCCc
Q psy3240         107 TPDTHHLINRARLESMKP-G--AILINTSRGQ  135 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~-g--ailINv~RG~  135 (274)
                      ............++.+++ |  ..||++|+..
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            322222223444444432 3  4788888754

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=95.69  E-value=0.027  Score=52.02  Aligned_cols=109  Identities=12%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CEEEEEccChHHHHHHHHHcc-------CCCeEEEEeCCCCCh--------h----HhhcC-Cc--ccCHHHHhc--ccC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-------YKVSKFLYTSRSKKP--------E----ADKRG-AE--HTNIDDLCK--QSD   98 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-------~G~~vv~~~~r~~~~--------~----a~~~g-~~--~~sl~ell~--~aD   98 (274)
                      .+|+|+|+|.||+.+++.++.       .+++++...++....        .    ....+ +.  ..+.++++.  +.|
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD   84 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence            479999999999999999975       355556655554320        0    11223 21  116677774  489


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhe
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVI  152 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~  152 (274)
                      +|+.++|......... .-....++.|.-+|-..-+.+. .-+.|.+.-+++|+.
T Consensus        85 vVVe~T~~~~~~~pa~-~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~  138 (325)
T 3ing_A           85 LLVDCTPASRDGVREY-SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKY  138 (325)
T ss_dssp             EEEECCCCCSSSHHHH-HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCccccchHH-HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCe
Confidence            9999999642211101 1233345666666655444432 344666655566664

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.69  E-value=0.022  Score=52.25  Aligned_cols=96  Identities=21%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCC--CeEEEEeCCCCChhH---hhcCC----cc----cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYK--VSKFLYTSRSKKPEA---DKRGA----EH----TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a---~~~g~----~~----~sl~ell~~aDvVil~lPlt  107 (274)
                      .++|+|+| .|.+|..++..|...|  .+++.+|.+.....+   .....    ..    .++.+.++.||+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            36899999 8999999999998777  556677754331111   11111    11    14578899999999998643


Q ss_pred             cc---cH-Hh--cc----H---HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         108 PD---TH-HL--IN----R---ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       108 ~~---T~-~l--i~----~---~~l~~mk~gailINv~RG~iVde  139 (274)
                      ..   ++ .+  .|    .   +.+....+.+++++++  .++|.
T Consensus        88 ~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            21   10 00  11    1   1222235788999874  56665

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.69  E-value=0.02  Score=55.62  Aligned_cols=100  Identities=13%  Similarity=0.250  Sum_probs=69.7

Q ss_pred             CCCCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCC
Q psy3240          37 GPALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        37 g~~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lP  105 (274)
                      |..++|++|+|+|+-          .=...+++.|...|+++.+||+.....  .  .... .++++.++.+|+|+++++
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~--~--~~~~~~~~~~~~~~ad~vvi~t~  423 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY--P--GVEISDNLEEVVRNADAIVVLAG  423 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB--T--TBCEESCHHHHHTTCSEEEECSC
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc--c--CcceecCHHHHHhcCCEEEEecC
Confidence            357999999999974          336899999999999888888765421  1  1222 388999999999999887


Q ss_pred             CCcccHHhccHH-HHhcCC-CCcEEEEcCCCchhcHHHHHh
Q psy3240         106 LTPDTHHLINRA-RLESMK-PGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       106 lt~~T~~li~~~-~l~~mk-~gailINv~RG~iVde~aL~~  144 (274)
                      - ++-+. ++.+ ..+.|+ +..+++|+ |+- .|.+.+.+
T Consensus       424 ~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~~~  460 (478)
T 3g79_A          424 H-SAYSS-LKADWAKKVSAKANPVIIDG-RNV-IEPDEFIG  460 (478)
T ss_dssp             C-HHHHS-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHHHT
T ss_pred             C-HHHHh-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHHHh
Confidence            4 22222 3433 344566 47899995 654 56665544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.68  E-value=0.014  Score=52.94  Aligned_cols=85  Identities=14%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-----C---HHHH-hcccCEEEEcCCCCcccHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-----N---IDDL-CKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-----s---l~el-l~~aDvVil~lPlt~~T~~  112 (274)
                      .+++.|+|+|.+|+.+|+.|...|. +++.+...........+....     +   ++++ +++||.|+++++..  ..+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SET  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HHH
Confidence            5689999999999999999999998 777765443222223444321     2   3344 67899999998864  334


Q ss_pred             hccHHHHhcCCCCcEEE
Q psy3240         113 LINRARLESMKPGAILI  129 (274)
Q Consensus       113 li~~~~l~~mk~gailI  129 (274)
                      +.-...++.+.+...+|
T Consensus       192 ~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          192 IHCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHCCCCeEE
Confidence            44456677777774444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.65  E-value=0.012  Score=51.48  Aligned_cols=96  Identities=14%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCc-ccCHHHHhcc-cCEEEEcCCCCccc-HH-
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAE-HTNIDDLCKQ-SDFIIITSALTPDT-HH-  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~-~~sl~ell~~-aDvVil~lPlt~~T-~~-  112 (274)
                      ++++|.|.|.|.||+.+++.|...|.++++.+++.....    .....+. ..+++++++. +|+|+.+...+... .. 
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~   81 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDEHY   81 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHH
Confidence            467899999999999999999999998888776544321    0011111 1234556666 99998876432110 00 


Q ss_pred             ----hc-cHHHHhcCC-CC-cEEEEcCCCch
Q psy3240         113 ----LI-NRARLESMK-PG-AILINTSRGQL  136 (274)
Q Consensus       113 ----li-~~~~l~~mk-~g-ailINv~RG~i  136 (274)
                          +. ....++.++ .+ ..||.+|+..+
T Consensus        82 ~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~v  112 (286)
T 3gpi_A           82 RLSYVEGLRNTLSALEGAPLQHVFFVSSTGV  112 (286)
T ss_dssp             -CCSHHHHHHHHHHTTTSCCCEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEcccEE
Confidence                00 123444444 23 46888876543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.64  E-value=0.018  Score=54.58  Aligned_cols=65  Identities=15%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC----Cccc---CHHHHhcccCEEEE
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG----AEHT---NIDDLCKQSDFIII  102 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g----~~~~---sl~ell~~aDvVil  102 (274)
                      +-+.|++|+|+|-|.+|+.+++.++.+|.+++++++....+...-..    ..+.   .+.++++++|+|+.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999999999888887554444311111    1111   34566778999984

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.64  E-value=0.02  Score=50.02  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             CEEEEEc-cChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPlt  107 (274)
                      ++|.|.| .|.||+.+++.|... |.++++..++..+.. ....+++.        .++.++++.+|+|+.+....
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            4689999 599999999999887 888877776544322 12223321        14667889999999887754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.64  E-value=0.0085  Score=54.38  Aligned_cols=87  Identities=15%  Similarity=0.061  Sum_probs=60.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc-------CHHHHhc-----ccCEEEEcCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT-------NIDDLCK-----QSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~-------sl~ell~-----~aDvVil~lP  105 (274)
                      .|++|.|+|. |.||..+++.++..|+++++.+++..+.+ +. +.|+...       ++.+.+.     ..|+|+.++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5899999997 99999999999999997666665443333 44 4665321       2333332     4789888775


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . +     .-...++.++++..++.++.
T Consensus       235 ~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          235 G-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             H-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            3 1     12456778888888888874

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.63  E-value=0.015  Score=52.93  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--Chh-H----hhcCC--c-ccCHHHHhcc--cCEEEEcCCCCccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--KPE-A----DKRGA--E-HTNIDDLCKQ--SDFIIITSALTPDT  110 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--~~~-a----~~~g~--~-~~sl~ell~~--aDvVil~lPlt~~T  110 (274)
                      .+|||||+|.+|+..++.+ .-+++++.+.++..  ..+ .    .+.++  . +.++++++++  .|+|++++|.....
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~   81 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG   81 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence            5899999999999888777 56777776655543  222 1    12354  2 3489999975  89999999853222


Q ss_pred             HHhccHHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         111 HHLINRARLESMKPGAILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      .  +-...++.=|  .+++.-- --.+-+.++|++..++.|+.
T Consensus        82 ~--~~~~al~aGk--hVl~EKPla~~~~ea~~l~~~a~~~g~~  120 (337)
T 3ip3_A           82 K--ILLEALERKI--HAFVEKPIATTFEDLEKIRSVYQKVRNE  120 (337)
T ss_dssp             H--HHHHHHHTTC--EEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred             H--HHHHHHHCCC--cEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence            1  2223333222  2444321 22334566677766666654

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.62  E-value=0.014  Score=54.31  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=53.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCC---C--ChhHh----hcC---Cccc---CHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRS---K--KPEAD----KRG---AEHT---NIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~---~--~~~a~----~~g---~~~~---sl~ell~~aDvVil~lP  105 (274)
                      .+|+|+| .|.+|+.+.+.|.. -.++.+....+.   .  ++...    -.+   ....   +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 69999999999986 344444443333   1  11110    112   1211   34555589999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ... ++... .+.   ++.|+.+||.|.-
T Consensus        85 ~~~-s~~~~-~~~---~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHDLA-PQF---LEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHHHH-HHH---HHTTCEEEECSST
T ss_pred             hHH-HHHHH-HHH---HHCCCEEEEcCCc
Confidence            532 22222 122   3679999999854

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.61  E-value=0.034  Score=53.31  Aligned_cols=94  Identities=10%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccCh----------HHHHHHHHHccCCCeEEEEeCCCCChhH-hhc-------------CCccc-CHHHH
Q psy3240          39 ALQNSTVGIVGCGR----------IGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKR-------------GAEHT-NIDDL   93 (274)
Q Consensus        39 ~L~gktVGIIGlG~----------IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~-------------g~~~~-sl~el   93 (274)
                      .+.|++|+|+|+--          -...+++.|...|+++.+||+....... ...             ++..+ ++.+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            58999999999873          7889999999999988888876443221 111             23333 68889


Q ss_pred             hcccCEEEEcCCCCcccHHhccHH-HHhcCCCCcEEEEcCCCc
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRA-RLESMKPGAILINTSRGQ  135 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~-~l~~mk~gailINv~RG~  135 (274)
                      ++.+|+|++++.-. +-+. ++.+ ..+.|+...+++|. |+-
T Consensus       406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999988753 3333 3443 44567776668887 543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.61  E-value=0.042  Score=51.63  Aligned_cols=95  Identities=19%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh--H--------hhcCCc---ccCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE--A--------DKRGAE---HTNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a--------~~~g~~---~~sl~ell~~aDvVil~  103 (274)
                      .|.|.+|+++|=|  ++..+++..+..+|+++.+..+..-.+.  .        .+.|..   ..+++|+++.+|||..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            6899999999985  9999999999999998777665442221  1        134543   24899999999999984


Q ss_pred             CCC--Cc----c-----cHHhccHHHHhcCC---CCcEEEEcCC
Q psy3240         104 SAL--TP----D-----THHLINRARLESMK---PGAILINTSR  133 (274)
Q Consensus       104 lPl--t~----~-----T~~li~~~~l~~mk---~gailINv~R  133 (274)
                      .=.  ..    +     ...-++.+.++.+|   |+++|.-+.=
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            431  11    0     12345889999999   9999998864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.59  E-value=0.012  Score=54.72  Aligned_cols=92  Identities=12%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-----C-HHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-----N-IDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-----s-l~ell------~~aDvVil~lPl  106 (274)
                      .|++|.|+|.|.+|...++.++.+|++ +++.+....+.+ +++.|+...     + +.+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            589999999999999999999999994 555555444444 667776422     1 33322      147999998875


Q ss_pred             Cccc-----------HHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDT-----------HHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T-----------~~li~~~~l~~mk~gailINv~R  133 (274)
                      ....           ...+ ...++.++++..++.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVL-NSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHH-HHHHHHEEEEEEEEECSC
T ss_pred             cccccccccccccchHHHH-HHHHHHHhcCCEEEEecc
Confidence            3210           0112 356777888888888874

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.56  E-value=0.021  Score=50.77  Aligned_cols=67  Identities=16%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhhc----CCcc-----c---CHHHHhcc--cCEEE
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKR----GAEH-----T---NIDDLCKQ--SDFII  101 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~----g~~~-----~---sl~ell~~--aDvVi  101 (274)
                      +.|++|.|.|. |.||+.+++.|...|.++++.+++.....   ....    ++..     .   ++.++++.  .|+|+
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            35789999996 99999999999999997777765543211   1111    1211     1   34456665  49998


Q ss_pred             EcCCC
Q psy3240         102 ITSAL  106 (274)
Q Consensus       102 l~lPl  106 (274)
                      .+...
T Consensus        81 h~A~~   85 (345)
T 2z1m_A           81 NLAAQ   85 (345)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            88764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.56  E-value=0.017  Score=53.89  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~   73 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+. +|.
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~   66 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN   66 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence            468999999999999999999999999986654 443

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.55  E-value=0.022  Score=51.88  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             CEEEEE-ccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCCCc
Q psy3240          43 STVGIV-GCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGII-GlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPlt~  108 (274)
                      ++|.|. |.|.||...++.++..|+++++.+.+..+.+ +++.|+..+      ++.+.+      ...|+|+-++.. +
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~  244 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-P  244 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-H
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-h
Confidence            677666 8999999999999999998777776555544 666676421      333322      258999998763 1


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .    + ...++.++++..++.++.
T Consensus       245 ~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          245 L----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             H----H-HHHHHHSCTTCEEEECCC
T ss_pred             h----H-HHHHhhhcCCCEEEEEec
Confidence            1    1 567788999999999974

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.53  E-value=0.058  Score=50.03  Aligned_cols=101  Identities=14%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCC--hh------Hh----h--cCCc--c-cCHHHHhcccCE
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKK--PE------AD----K--RGAE--H-TNIDDLCKQSDF   99 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~--~~------a~----~--~g~~--~-~sl~ell~~aDv   99 (274)
                      .+.|++|++||=|  ++..+++..+..+|+++.+..+..-.  +.      +.    +  .|..  . .+++|+++.+||
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            6999999999965  89999999999999977776665432  11      11    1  3543  2 389999999999


Q ss_pred             EEEc----CCCCc----c-----cHHhccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         100 IIIT----SALTP----D-----THHLINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       100 Vil~----lPlt~----~-----T~~li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                      |..-    +...+    +     ....++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~  293 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTA  293 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCH
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCH
Confidence            9873    22111    1     11336899999999999999886   6654443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.53  E-value=0.019  Score=49.92  Aligned_cols=64  Identities=14%  Similarity=0.256  Sum_probs=45.8

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccC--CCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPY--KVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~--G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPl  106 (274)
                      |+|.|.|. |.||+.+++.|...  |.++++.+++..+.. ....++..        .++.++++.+|+|+.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            46889986 99999999999988  888888776554332 22223321        1456778899999987754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.52  E-value=0.029  Score=50.25  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh-cCCc-----cc---CHHHHhc--ccCEEEE
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK-RGAE-----HT---NIDDLCK--QSDFIII  102 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~-~g~~-----~~---sl~ell~--~aDvVil  102 (274)
                      -+++.+++|.|.|. |.||+.+++.|...|.++++.+++.....  ... .++.     ..   +++++++  .+|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            36899999999996 99999999999999998777776443221  011 1111     11   3556777  8999998


Q ss_pred             cCCCC
Q psy3240         103 TSALT  107 (274)
Q Consensus       103 ~lPlt  107 (274)
                      +....
T Consensus        95 ~A~~~   99 (330)
T 2pzm_A           95 SAAAY   99 (330)
T ss_dssp             CCCCC
T ss_pred             CCccC
Confidence            87643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.51  E-value=0.01  Score=55.32  Aligned_cols=93  Identities=12%  Similarity=0.111  Sum_probs=63.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc-----CH-HHHhc------ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT-----NI-DDLCK------QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~-----sl-~ell~------~aDvVil~lPl  106 (274)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+.+..+.+ +++.|+...     ++ .+.+.      ..|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 6666665544444 566676422     22 33221      48999998875


Q ss_pred             Ccc----------cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPD----------THHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~----------T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ...          ....+ .+.++.++++..++.++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          265 EAHGLGDEANTETPNGAL-NSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             TCBCSGGGTTSBCTTHHH-HHHHHHEEEEEEEECCSCC
T ss_pred             ccccccccccccccHHHH-HHHHHHHhcCCEEEEeccc
Confidence            320          00112 3567778899999888753

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.49  E-value=0.027  Score=54.77  Aligned_cols=65  Identities=28%  Similarity=0.459  Sum_probs=42.6

Q ss_pred             CCEEEEEccChHH--HHHHHHHc---cC-CCeEEEEeCCCCChh-----Hh----hcCC----cc-cCHHHHhcccCEEE
Q psy3240          42 NSTVGIVGCGRIG--LSVLEKLI---PY-KVSKFLYTSRSKKPE-----AD----KRGA----EH-TNIDDLCKQSDFII  101 (274)
Q Consensus        42 gktVGIIGlG~IG--~~iA~~L~---~~-G~~vv~~~~r~~~~~-----a~----~~g~----~~-~sl~ell~~aDvVi  101 (274)
                      .++|+|||.|.||  .++|..|.   ++ |.+++.+|....+.+     ..    ..+.    .. .++++.++.||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            4699999999974  55566553   33 776777776543211     00    1111    11 27788999999999


Q ss_pred             EcCCC
Q psy3240         102 ITSAL  106 (274)
Q Consensus       102 l~lPl  106 (274)
                      +++|.
T Consensus        83 iaagv   87 (480)
T 1obb_A           83 NTAMV   87 (480)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.48  E-value=0.016  Score=52.65  Aligned_cols=87  Identities=10%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|++|.|+|. |.||..+++.++..|+++++.+++..+.+ +.+.|+...      ++.+.+      ...|+|+.++. 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5899999999 99999999999999997777665443333 444555321      222222      24788888876 


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .+.     -...++.|+++..++.++.
T Consensus       245 ~~~-----~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          245 ALY-----FEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             SSS-----HHHHHHHEEEEEEEEESSC
T ss_pred             HHH-----HHHHHHhhccCCEEEEEec
Confidence            322     2355667788888888875

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.43  E-value=0.031  Score=50.36  Aligned_cols=64  Identities=22%  Similarity=0.475  Sum_probs=45.0

Q ss_pred             CCEEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCCChh----H-h----hcCCcc-cCHHHHhcccCEEEEcCC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE----A-D----KRGAEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~----a-~----~~g~~~-~sl~ell~~aDvVil~lP  105 (274)
                      -.+|+|+| +|.||+.+++.+.. -+++.+...++.....    + .    ..++.. .++++++.++|+|+-+.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            36899999 89999999998864 4676666555443211    0 0    113433 389999999999998875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.43  E-value=0.013  Score=53.20  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCccc-----CHHHH----hc--ccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDL----CK--QSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~el----l~--~aDvVil~lPl  106 (274)
                      -.|.+|.|+|.|.+|...++.++.. |.++++.+.+..+.+ +++.|+..+     ++.+.    ..  ..|+|+-++..
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~  249 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGA  249 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCC
Confidence            3589999999999999999999988 666666665554444 667777532     22222    11  58999998864


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...    + ...++.++++..++.++-
T Consensus       250 ~~~----~-~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          250 QST----I-DTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HHH----H-HHHHHHEEEEEEEEECSC
T ss_pred             HHH----H-HHHHHHHhcCCEEEEECC
Confidence            211    2 356677888888888874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.41  E-value=0.014  Score=52.60  Aligned_cols=87  Identities=14%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|++|.|.| .|.||..+++.++..|+++++.+++..+.+ +.+.|....      +..+.+      ...|+|+.++. 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            589999999 799999999999999997776665433333 444554321      222222      14799998876 


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . .+    -...++.|+++..++.++.
T Consensus       219 ~-~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          219 R-DT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             G-GG----HHHHHHTEEEEEEEEECCC
T ss_pred             h-HH----HHHHHHHhcCCCEEEEEec
Confidence            2 21    2456778888888988875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.40  E-value=0.01  Score=55.25  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=45.9

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChh--H--hhc------CCcc-cCHHHHhcccCEEEEcCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--A--DKR------GAEH-TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a--~~~------g~~~-~sl~ell~~aDvVil~lP  105 (274)
                      +.+++|+|||. |.+|+.+|..+...|.  +++.+|....+..  +  ...      .+.. .++.+.++.||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            35689999998 9999999988877774  5777775433222  1  111      1122 367888999999999863

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.38  E-value=0.037  Score=53.36  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPl  106 (274)
                      +++|.|.| .|.||+.+++.|...|.++++.+++..+......... ..+.+++..+|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~-~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPL-NPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTT-SCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeeccc-chhHHhcCCCCEEEECCCC
Confidence            68999999 6999999999999999988777766544321111111 1345677899999987654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.38  E-value=0.018  Score=53.59  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~   75 (274)
                      ..|++++|.|||+|.+|..+|+.|...|... .++|...
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            3578999999999999999999999888754 4555543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.38  E-value=0.026  Score=47.83  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc--------ccCHHHHhcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE--------HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~--------~~sl~ell~~aDvVil~lPlt  107 (274)
                      +.+|++.|.| .|.||+.+++.|...|.  ++++.+++..... ....++.        ..+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999 69999999999999998  8888776554322 1111221        124556788899999988654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.36  E-value=0.05  Score=52.59  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             CCCCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhhc------------CCccc-CHHHH
Q psy3240          37 GPALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR------------GAEHT-NIDDL   93 (274)
Q Consensus        37 g~~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~------------g~~~~-sl~el   93 (274)
                      +.++.|++|+|+|+-          .=...+++.|...|+++.+||+..........            .+..+ ++++.
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQA  402 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHH
Confidence            346999999999984          35788999999999988888876432111111            23443 68899


Q ss_pred             hcccCEEEEcCCCCcccHHhccHHHH-hcCCCCcEEEEcCCCchhcHHHHH
Q psy3240          94 CKQSDFIIITSALTPDTHHLINRARL-ESMKPGAILINTSRGQLVDQEALI  143 (274)
Q Consensus        94 l~~aDvVil~lPlt~~T~~li~~~~l-~~mk~gailINv~RG~iVde~aL~  143 (274)
                      ++.+|+|++++.-. +-+. ++.+.+ +.|+ ..+++|+ |+ +.+.+.+.
T Consensus       403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~~~  448 (478)
T 2y0c_A          403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPETMS  448 (478)
T ss_dssp             TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHHHH
T ss_pred             HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHHHH
Confidence            99999999988753 3222 344444 4555 4789998 44 34555443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.35  E-value=0.038  Score=51.73  Aligned_cols=86  Identities=20%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeC-CCCChh-Hh--h----cC-------------------Cccc---CHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTS-RSKKPE-AD--K----RG-------------------AEHT---NID   91 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~-r~~~~~-a~--~----~g-------------------~~~~---sl~   91 (274)
                      .+|||+|+|.||+.+.|.|... .++++...+ ...... +.  +    .|                   +...   +++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999998765 676666665 332210 00  0    00                   0011   444


Q ss_pred             HHh---cccCEEEEcCCCCcccHHhccHHHHhcCCCCc--EEEEcCC
Q psy3240          92 DLC---KQSDFIIITSALTPDTHHLINRARLESMKPGA--ILINTSR  133 (274)
Q Consensus        92 ell---~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga--ilINv~R  133 (274)
                      ++.   ..+|+|+.|+|.....+     ..-..++.|+  ++|+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~e-----~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTEE-----KASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHH-----HHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhHH-----HHHHHHHcCCcEEEEeCCC
Confidence            432   46999999999643321     2223456788  9998865

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.35  E-value=0.062  Score=48.59  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccC-CCeEEEEeCCCCChh-Hh-hcCCcc---------cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-AD-KRGAEH---------TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~-~~g~~~---------~sl~ell~~aDvVil~lP  105 (274)
                      .+.+++|.|.| .|.||+.+++.|... |.++++.+++..... .. ..++..         .+++++++.+|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999887 888888776554332 11 122221         135567889999998665


Q ss_pred             C
Q psy3240         106 L  106 (274)
Q Consensus       106 l  106 (274)
                      .
T Consensus       101 ~  101 (372)
T 3slg_A          101 I  101 (372)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.35  E-value=0.057  Score=47.66  Aligned_cols=66  Identities=12%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHh-----hcCCcccCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-----KRGAEHTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-----~~g~~~~sl~ell~~aDvVil~lPlt  107 (274)
                      +++|.|.| .|.||+.+++.|...|.++++.+++.......     ...+...++.++++.+|+|+.+....
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence            47899999 69999999999999999877777663222100     11112124667888999999887653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.34  E-value=0.018  Score=53.08  Aligned_cols=93  Identities=16%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCCChh-HhhcCCccc-----CHHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~ell~-----~aDvVil~lPlt  107 (274)
                      .|++|.|+| .|.+|...++.++. .|+++++.+.+..+.+ +++.|+..+     ++.+.+.     ..|+|+-++...
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            688999999 99999999999998 5887666655444444 667777532     3333332     578999877531


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      +    .+ ...++.++++..++.++....++
T Consensus       251 ~----~~-~~~~~~l~~~G~iv~~g~~~~~~  276 (363)
T 4dvj_A          251 K----HA-AEIADLIAPQGRFCLIDDPSAFD  276 (363)
T ss_dssp             H----HH-HHHHHHSCTTCEEEECSCCSSCC
T ss_pred             h----hH-HHHHHHhcCCCEEEEECCCCccc
Confidence            1    12 35677789999999886443334

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.32  E-value=0.022  Score=51.69  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCC--eEEEEeC--CCCChh--Hh---hc-----CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKV--SKFLYTS--RSKKPE--AD---KR-----GAEH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~--~vv~~~~--r~~~~~--a~---~~-----g~~~-~sl~ell~~aDvVil~lPl  106 (274)
                      ++|+|+| .|.+|+.++..|...|.  +.+.+|.  ...+..  ..   ..     .... .+..+.++.||+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999976664  4555655  221111  00   00     1111 0235678999999999864


Q ss_pred             Ccc---cHH-hc--c----H---HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         107 TPD---THH-LI--N----R---ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       107 t~~---T~~-li--~----~---~~l~~mk~gailINv~RG~iVde  139 (274)
                      ...   ++. ++  |    .   +.+....|.+++++++  .++|.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S--NPv~~  124 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS--NPVDL  124 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC--SSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC--ChHHH
Confidence            321   111 10  1    1   2334457889999974  44443

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.31  E-value=0.02  Score=53.46  Aligned_cols=65  Identities=12%  Similarity=0.223  Sum_probs=40.8

Q ss_pred             CEEEEEccChHHHHHHHHHccC----CCeEEEEeCCCCChhHhhc-CCcc-cCHHHHhccc-------------------
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKR-GAEH-TNIDDLCKQS-------------------   97 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~-g~~~-~sl~ell~~a-------------------   97 (274)
                      .+|||||+|.||+.+++.++..    +++++...++......... |+.. .+++++++..                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            4799999999999999999764    2555555543221111122 4433 3555555432                   


Q ss_pred             -CEEEEcCCCC
Q psy3240          98 -DFIIITSALT  107 (274)
Q Consensus        98 -DvVil~lPlt  107 (274)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             7999999864

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=95.30  E-value=0.033  Score=52.67  Aligned_cols=103  Identities=7%  Similarity=0.022  Sum_probs=73.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh-
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE-  120 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~-  120 (274)
                      -.++.|+|.|.+|+++|+.++.+|++++++|+|.....           .+-+..+|-++...|.     ..+..  +. 
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~-----------~~~fp~a~~~~~~~p~-----~~~~~--~~~  265 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT-----------TARFPTADEVVVDWPH-----RYLAA--QAE  265 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC-----------TTTCSSSSEEEESCHH-----HHHHH--HHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc-----------cccCCCceEEEeCChH-----HHHHh--hcc
Confidence            45899999999999999999999999999998865211           1223456655554441     11111  11 


Q ss_pred             --cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240         121 --SMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus       121 --~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                        .+.+++.+|=+.++.-.|...|...|+.....||.+....++
T Consensus       266 ~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~iGSrrk  309 (386)
T 2we8_A          266 AGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRT  309 (386)
T ss_dssp             HTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEECCCHHH
T ss_pred             ccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEEecChhH
Confidence              267888999999998899999999887643677776665544

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.28  E-value=0.017  Score=56.01  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=42.7

Q ss_pred             CCCEEEEEccChH-HHHHHHHHccC-----CCeEEEEeCCCCChhH---------hhcCC----cc-cCHHHHhcccCEE
Q psy3240          41 QNSTVGIVGCGRI-GLSVLEKLIPY-----KVSKFLYTSRSKKPEA---------DKRGA----EH-TNIDDLCKQSDFI  100 (274)
Q Consensus        41 ~gktVGIIGlG~I-G~~iA~~L~~~-----G~~vv~~~~r~~~~~a---------~~~g~----~~-~sl~ell~~aDvV  100 (274)
                      +.++|+|||.|.. |.++|..|...     +.+++.||....+.+.         ...+.    .. .++++.++.||+|
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V  106 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV  106 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence            3569999999998 66676655433     4456666654432110         11121    12 2788899999999


Q ss_pred             EEcCCC
Q psy3240         101 IITSAL  106 (274)
Q Consensus       101 il~lPl  106 (274)
                      ++++|.
T Consensus       107 Viaag~  112 (472)
T 1u8x_X          107 MAHIRV  112 (472)
T ss_dssp             EECCCT
T ss_pred             EEcCCC
Confidence            999986

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.27  E-value=0.042  Score=50.24  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCc---c-------cCHHHHh------cccCEEEE
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAE---H-------TNIDDLC------KQSDFIII  102 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~---~-------~sl~ell------~~aDvVil  102 (274)
                      .|++|.|+|.|.+|...++.++.+|++ +++.+.+..+.+ +++.+..   +       .++.+.+      ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            588999999999999999999999997 555555444433 4444211   1       1122222      24899999


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ++.....    + ...++.++++..++.++..
T Consensus       259 ~~g~~~~----~-~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          259 CTGVESS----I-AAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CSCCHHH----H-HHHHHHSCTTCEEEECCCC
T ss_pred             CCCChHH----H-HHHHHHhcCCCEEEEEccC
Confidence            8864211    1 3567778999999998753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.27  E-value=0.037  Score=48.53  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC-C--Ch-h-H------hhcCCcc--------cCHHHHhcccCEEE
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS-K--KP-E-A------DKRGAEH--------TNIDDLCKQSDFII  101 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~-~--~~-~-a------~~~g~~~--------~sl~ell~~aDvVi  101 (274)
                      +++|.|.|. |.||+.+++.|...|.++++.+++. .  .+ . .      ...++..        .++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999996 9999999999998898777777654 1  11 1 1      1234432        14567788999999


Q ss_pred             EcCCCC--cccHHhcc
Q psy3240         102 ITSALT--PDTHHLIN  115 (274)
Q Consensus       102 l~lPlt--~~T~~li~  115 (274)
                      .+.+..  ..+..+++
T Consensus        82 ~~a~~~~~~~~~~l~~   97 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIK   97 (307)
T ss_dssp             ECSSSSCGGGHHHHHH
T ss_pred             ECCcccccccHHHHHH
Confidence            988753  23444443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.24  E-value=0.055  Score=49.24  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=45.3

Q ss_pred             CEEEEEc-cChHHHHHHHHHc-cCCCeEEEEeCCCCChh----H-h-----hcCCccc-CHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE----A-D-----KRGAEHT-NIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~----a-~-----~~g~~~~-sl~ell~~aDvVil~lP  105 (274)
                      .+|+|+| +|+||+.+++.+. .-+++.+...++.....    + .     ..|+... ++++++..+|+|+-..+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~   97 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ   97 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC
Confidence            5899999 9999999999986 45787676655543210    1 1     2344433 89999999999997664

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=95.24  E-value=0.069  Score=48.73  Aligned_cols=87  Identities=6%  Similarity=-0.017  Sum_probs=61.6

Q ss_pred             CC-CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC----hh-HhhcCCccc-CHH--------HHh--------cc
Q psy3240          41 QN-STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK----PE-ADKRGAEHT-NID--------DLC--------KQ   96 (274)
Q Consensus        41 ~g-ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~----~~-a~~~g~~~~-sl~--------ell--------~~   96 (274)
                      .| .+|.|+|. |.+|...++.++.+|+++++..+...+    .. +++.|+..+ +..        +.+        ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            47 89999998 999999999999999987777654443    22 556776532 221        112        24


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +|+|+-++.. +.   ..  ..++.++++..++.++.
T Consensus       246 ~Dvvid~~G~-~~---~~--~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          246 AKLALNCVGG-KS---ST--GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             EEEEEESSCH-HH---HH--HHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCc-hh---HH--HHHHHhccCCEEEEecC
Confidence            7999998863 11   22  56788999999999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.24  E-value=0.057  Score=51.77  Aligned_cols=87  Identities=15%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEccC----------hHHHHHHHHHccC-CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCC
Q psy3240          39 ALQNSTVGIVGCG----------RIGLSVLEKLIPY-KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        39 ~L~gktVGIIGlG----------~IG~~iA~~L~~~-G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt  107 (274)
                      .+.|++|+|+|+-          .-...+++.|... |+++.+||+.....      ....++++.++.+|+|+++++-.
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~~~  385 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSDHS  385 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSCCG
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecCCH
Confidence            4789999999974          3478999999998 99888888765431      22347899999999999988743


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                       +-+. ++.+.++.|+ +.+++|+ |+-
T Consensus       386 -~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          386 -EFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             -GGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             -HHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence             3222 2334456676 6789996 543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.22  E-value=0.076  Score=48.53  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC----hh-HhhcCCccc-CHH--------HHhc---ccCEEEE
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK----PE-ADKRGAEHT-NID--------DLCK---QSDFIII  102 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~----~~-a~~~g~~~~-sl~--------ell~---~aDvVil  102 (274)
                      .|.+|.|+|. |.+|...++.++.+|+++++..++..+    .+ +++.|+..+ +..        ++..   ..|+|+-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            5889999998 999999999999999987776655433    12 556777532 221        2222   3799999


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ++.. +.+     .+.++.++++..++.++
T Consensus       247 ~~g~-~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVGG-KSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCH-HHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCCc-HHH-----HHHHHhhCCCCEEEEEe
Confidence            8752 222     24688899999999886

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.22  E-value=0.024  Score=51.76  Aligned_cols=87  Identities=13%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             CC--CEEEEEcc-ChHHHHHHHHHccCCC-eEEEEeCCCCChh-Hhh-cCCccc------CHHHHhc-----ccCEEEEc
Q psy3240          41 QN--STVGIVGC-GRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADK-RGAEHT------NIDDLCK-----QSDFIIIT  103 (274)
Q Consensus        41 ~g--ktVGIIGl-G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~-~g~~~~------sl~ell~-----~aDvVil~  103 (274)
                      .|  ++|.|.|. |.||..+++.++..|+ ++++.+++..+.. ..+ .|+...      +..+.+.     ..|+|+.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            46  99999998 9999999999999999 7777765543333 333 565321      2333222     37899887


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      +..     . .-...++.++++..++.++.
T Consensus       238 ~G~-----~-~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          238 VGG-----N-ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CCH-----H-HHHHHHHTEEEEEEEEECCC
T ss_pred             CCH-----H-HHHHHHHHhccCcEEEEECC
Confidence            752     1 12456778888888888875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.21  E-value=0.042  Score=48.15  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .+.||++.|.|.   |.||+.+|+.|...|+++++.+++..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997   69999999999999998777776543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.21  E-value=0.028  Score=52.03  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=52.0

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCC-CCChh-H--hh-------cC-C---------------c-c--cCHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSR-SKKPE-A--DK-------RG-A---------------E-H--TNID   91 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r-~~~~~-a--~~-------~g-~---------------~-~--~sl~   91 (274)
                      .+|||+|+|.||+.+++.|.. -+++++...++ ..... +  .+       +. .               . .  .+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            489999999999999999864 45776666653 22111 0  00       00 0               0 0  1455


Q ss_pred             HH-h--cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          92 DL-C--KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        92 el-l--~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ++ +  ..+|+|+.|+|.....+     ..-..++.|+..|+++-
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e-----~a~~~l~aGak~V~iSa  123 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTME-----KAGAHLQGGAKRVIISA  123 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHH-----HHGGGGGGTCSEEEESS
T ss_pred             HCccccCCCCEEEECCCchhhHH-----HHHHHHhCCCeEEEecc
Confidence            55 2  57999999999643322     22334567766666654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.18  E-value=0.075  Score=47.05  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=51.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC-Chh-H---hhcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-A---DKRGAEH--------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a---~~~g~~~--------~sl~ell~~aDvVil~lPlt  107 (274)
                      .++|.|.|. |.||+.+++.|...|.++++.+++.. ... .   ...+++.        .++.++++.+|+|+.+.+..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            368999995 99999999999999998877776653 221 1   2234432        14567888999999887643


Q ss_pred             --cccHHhcc
Q psy3240         108 --PDTHHLIN  115 (274)
Q Consensus       108 --~~T~~li~  115 (274)
                        ..++.+++
T Consensus        91 ~~~~~~~l~~  100 (318)
T 2r6j_A           91 QILDQFKILE  100 (318)
T ss_dssp             GSTTHHHHHH
T ss_pred             hhHHHHHHHH
Confidence              23455554

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.18  E-value=0.018  Score=49.96  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=53.9

Q ss_pred             EEEEEcc-ChHHHHHHHHHccC--CCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCCC----
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPY--KVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSALT----  107 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~--G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPlt----  107 (274)
                      +|.|.|. |.||+.+++.|...  |.++++.+++..+.. ....++..        .++.++++.+|+|+.+....    
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~   80 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQR   80 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHH
Confidence            4788986 99999999999987  888888776544332 22223321        14567888999999876542    


Q ss_pred             -cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 -PDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 -~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                       ..++.++..-.-.  + -..+|.+|+..
T Consensus        81 ~~~~~~l~~a~~~~--~-~~~~v~~Ss~~  106 (286)
T 2zcu_A           81 APQHRNVINAAKAA--G-VKFIAYTSLLH  106 (286)
T ss_dssp             -CHHHHHHHHHHHH--T-CCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHc--C-CCEEEEECCCC
Confidence             1233333221111  1 23677777644

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.17  E-value=0.018  Score=57.45  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEe
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYT   72 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~   72 (274)
                      ..|++++|.|||+|.+|..+|+.|...|...+...
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLv  357 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFV  357 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            34678999999999999999999999998655443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.15  E-value=0.1  Score=45.48  Aligned_cols=37  Identities=22%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .++.||++.|.|. |-||+++|+.|...|+++++.+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            4699999999995 789999999999999988777654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.12  E-value=0.021  Score=49.71  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ..+.||++.|.|.   |.||+.+|+.|...|+++++.+++.
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4688999999997   6999999999999999877776554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.12  E-value=0.052  Score=49.68  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCC----CCChh--H--hhcC---C----c-ccCHHHHhccc
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSR----SKKPE--A--DKRG---A----E-HTNIDDLCKQS   97 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r----~~~~~--a--~~~g---~----~-~~sl~ell~~a   97 (274)
                      .++|+|+|. |.+|+.++..|...|.       +++.+|..    ..+..  +  ....   .    . ..++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            368999997 9999999999987665       56666654    11111  0  1111   1    1 13678899999


Q ss_pred             CEEEEcCCCCcc---cHH-hc--c----H---HHHhcC-CCCcEEEEcCCCchhcH
Q psy3240          98 DFIIITSALTPD---THH-LI--N----R---ARLESM-KPGAILINTSRGQLVDQ  139 (274)
Q Consensus        98 DvVil~lPlt~~---T~~-li--~----~---~~l~~m-k~gailINv~RG~iVde  139 (274)
                      |+|+.+......   ++. ++  |    .   +.+... +|.+++|+++  .++|.
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S--NPv~~  138 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG--NPANT  138 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc--CchHH
Confidence            999988753321   111 11  1    1   123333 4889999997  44543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.09  E-value=0.021  Score=51.63  Aligned_cols=87  Identities=18%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHH----h--cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDL----C--KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~el----l--~~aDvVil~lPl  106 (274)
                      .|++|.|.|. |.||..+++.++..|+++++.+++..+.+ +.+.|....      +..+.    .  ...|+|+.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            5889999995 99999999999999997777665443333 444554321      22221    1  247888888764


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +.     -...++.++++..++.++.
T Consensus       225 -~~-----~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          225 -DT-----LQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             -TT-----HHHHHHTEEEEEEEEECCC
T ss_pred             -HH-----HHHHHHhhccCCEEEEEec
Confidence             11     2456777888888888874

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.07  E-value=0.035  Score=51.55  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTS   73 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~   73 (274)
                      .+|||+|+|.||+.+++.|... +++++...+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            4899999999999999998764 566666655

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.04  E-value=0.031  Score=48.46  Aligned_cols=97  Identities=9%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc---CHHHHhc-------ccCEEEEcCCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT---NIDDLCK-------QSDFIIITSALT  107 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~---sl~ell~-------~aDvVil~lPlt  107 (274)
                      +-.+|++.|.|. |.||+++|+.|...|+++++.+++..+.......+...   +++++++       ..|+|+.+.-..
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~   98 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGW   98 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            344789999995 78999999999999998777776554332111111111   3334443       349998876531


Q ss_pred             -------cccH----Hh----------ccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 -------PDTH----HL----------INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 -------~~T~----~l----------i~~~~l~~mk~gailINv~RG~  135 (274)
                             +.+.    .+          +.+..++.|+++..+|++++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A           99 SGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                   1111    11          1233456677777899998744

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.03  E-value=0.035  Score=49.91  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=61.6

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc-------ccC---HHHH-------hcc
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE-------HTN---IDDL-------CKQ   96 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~-------~~s---l~el-------l~~   96 (274)
                      .+.|+||++.|-|. +-||+++|+.|...|+++++.+++....+  ..+.+..       ..+   .+++       +..
T Consensus        24 s~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           24 TQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             -CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35699999999986 57999999999999998777776543322  2232221       111   2222       334


Q ss_pred             cCEEEEcCCCCc------ccHH----hc----------cHHHHhcCCCCcEEEEcCCC
Q psy3240          97 SDFIIITSALTP------DTHH----LI----------NRARLESMKPGAILINTSRG  134 (274)
Q Consensus        97 aDvVil~lPlt~------~T~~----li----------~~~~l~~mk~gailINv~RG  134 (274)
                      -|+++...-..+      .+..    ++          .+..++.|+++.-+||+++.
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~  161 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGST  161 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeeh
Confidence            699988763321      1111    11          23457788888889998863

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.02  E-value=0.044  Score=46.23  Aligned_cols=67  Identities=22%  Similarity=0.186  Sum_probs=46.1

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccC--CCeEEEEeCCCCChhHhhcCCcc--------cCHHHHhcccCEEEEcCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAEH--------TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~a~~~g~~~--------~sl~ell~~aDvVil~lPl  106 (274)
                      ..+++|.|.| .|.||+.+++.|...  |.++++.+++..+......++..        .+++++++.+|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999999 699999999999988  78777766543221111112211        1456778899999988754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.00  E-value=0.03  Score=53.90  Aligned_cols=65  Identities=14%  Similarity=0.274  Sum_probs=47.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcc-----c---CHHHH-hcccCEEEEcCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH-----T---NIDDL-CKQSDFIIITSAL  106 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~-----~---sl~el-l~~aDvVil~lPl  106 (274)
                      .++|-|+|+|.+|+.+|+.|...|..+++.+.......  ....++..     .   .|+++ +++||+++.+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            46899999999999999999999998888887654433  23445432     1   24443 6789999887765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.99  E-value=0.08  Score=46.80  Aligned_cols=69  Identities=16%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------cCC------c---ccCHHHHhcccCEE
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------RGA------E---HTNIDDLCKQSDFI  100 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------~g~------~---~~sl~ell~~aDvV  100 (274)
                      .+.+++|.|.|. |.||+.+++.|...|.++++.+++..... ...       .++      .   ..+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            478899999997 99999999999999997777765432211 100       111      1   11455677789999


Q ss_pred             EEcCCCC
Q psy3240         101 IITSALT  107 (274)
Q Consensus       101 il~lPlt  107 (274)
                      +.+....
T Consensus        88 ih~A~~~   94 (342)
T 1y1p_A           88 AHIASVV   94 (342)
T ss_dssp             EECCCCC
T ss_pred             EEeCCCC
Confidence            9877543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.98  E-value=0.023  Score=52.10  Aligned_cols=87  Identities=11%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|++|.|.| .|.||..+++.++..|+++++.+.+..+.+ +.+.|+...      +..+.+      ...|+|+.++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            589999999 799999999999999997777665443333 444555321      222222      247999988753


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                       +.    + ...++.|+++..++.++.
T Consensus       242 -~~----~-~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          242 -SY----W-EKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             -GG----H-HHHHHHEEEEEEEEECCC
T ss_pred             -hH----H-HHHHHhccCCCEEEEEec
Confidence             11    2 345777888889988874

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=94.97  E-value=0.033  Score=43.81  Aligned_cols=67  Identities=16%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCcc---cCHHHHhc--ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEH---TNIDDLCK--QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~---~sl~ell~--~aDvVil~lPlt  107 (274)
                      ..+++.|+|.|..|+.+++.++.. |++++++.+...... ..-.|+..   .++.++++  ..|.|++++|..
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~   76 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA   76 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence            356899999999999999999754 787777765443221 11123322   24555554  478899999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.95  E-value=0.045  Score=52.93  Aligned_cols=111  Identities=15%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             CCCEEEEEccChHHHH-HHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHH---
Q psy3240          41 QNSTVGIVGCGRIGLS-VLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHH---  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~-iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~---  112 (274)
                      ..|+|.|||+|.+|.+ +|+.|+..|+++.++|.+.....  ..+.|+...  .-.+.+..+|+|+..--..+....   
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~  100 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVA  100 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHH
Confidence            3589999999999996 89999999998888776543222  345677543  223346779999885222222211   


Q ss_pred             -------hcc-HHHHhc-CCCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         113 -------LIN-RARLES-MKPG-AILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       113 -------li~-~~~l~~-mk~g-ailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                             ++. .+++.. ++.. .+-|--+.|+.--..-+...|+..|.
T Consensus       101 a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  149 (494)
T 4hv4_A          101 AREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL  149 (494)
T ss_dssp             HHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence                   222 233433 3322 34455567888888888888887764

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=94.94  E-value=0.036  Score=55.52  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTS   73 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~   73 (274)
                      .|++++|.|||+|.+|..+|+.|...|...+. +|.
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~  358 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN  358 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            47889999999999999999999999986554 444

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.92  E-value=0.065  Score=47.74  Aligned_cols=98  Identities=13%  Similarity=0.167  Sum_probs=60.8

Q ss_pred             CCCCCCEEEEEcc-Ch--HHHHHHHHHccCCCeEEEEeCCCCChh-H----hhcC-C-----ccc---CHHHHhc-----
Q psy3240          38 PALQNSTVGIVGC-GR--IGLSVLEKLIPYKVSKFLYTSRSKKPE-A----DKRG-A-----EHT---NIDDLCK-----   95 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~--IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~~~g-~-----~~~---sl~ell~-----   95 (274)
                      ..+.||++.|.|. |.  ||+++|+.|...|+++++.+++....+ .    ...+ +     ...   +++++++     
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence            4689999999997 45  999999999999998777665422111 1    1111 1     111   2333333     


Q ss_pred             --ccCEEEEcCCCCc----------ccHH----h----------ccHHHHhcCCCCcEEEEcCCCc
Q psy3240          96 --QSDFIIITSALTP----------DTHH----L----------INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        96 --~aDvVil~lPlt~----------~T~~----l----------i~~~~l~~mk~gailINv~RG~  135 (274)
                        ..|+++.+.-...          .+..    +          +.+..++.|+++..+||+++..
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence              5799998775432          1110    1          1234566788888999998743

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.91  E-value=0.09  Score=46.24  Aligned_cols=37  Identities=11%  Similarity=0.079  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+.||++.|.|.   |.||+++|+.|...|+++++.+++.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            489999999997   6999999999999999877776554

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.90  E-value=0.099  Score=47.97  Aligned_cols=95  Identities=18%  Similarity=0.289  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccC-CCeEEEEeCCCCC--hh----HhhcCCcc---cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPY-KVSKFLYTSRSKK--PE----ADKRGAEH---TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~-G~~vv~~~~r~~~--~~----a~~~g~~~---~sl~ell~~aDvVil~lP  105 (274)
                      .+.|++|++||=   |++..+++..+..+ |+++.+..+..-.  +.    +.+.|...   .+++|+++.+|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            589999999996   58999999999999 9977666654322  11    23445543   489999999999997432


Q ss_pred             ------CCccc-----HHhccHHHHhcCCCCcEEEEcC-CCc
Q psy3240         106 ------LTPDT-----HHLINRARLESMKPGAILINTS-RGQ  135 (274)
Q Consensus       106 ------lt~~T-----~~li~~~~l~~mk~gailINv~-RG~  135 (274)
                            ...+-     ..-++.+.++.  ++++|.-+. ||.
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~  267 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVD  267 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSS
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCC
Confidence                  11111     13367788876  888888775 553

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.90  E-value=0.018  Score=51.66  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHH--h-----cccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDL--C-----KQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~el--l-----~~aDvVil~lPlt~~T~  111 (274)
                      |+ |.|+|. |.+|...++.++..|+++++.+.+..+.+ +++.|+..+ +..+.  +     ...|+|+-++.. +   
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~-~---  222 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD-K---  222 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-H---
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-H---
Confidence            45 999998 99999999999999998777776655555 666776532 22111  1     246888887642 1   


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCC
Q psy3240         112 HLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG  134 (274)
                        .-...++.++++..++.++..
T Consensus       223 --~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECCCT
T ss_pred             --HHHHHHHHHhcCCEEEEEecC
Confidence              234667888999999998753

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=94.89  E-value=0.051  Score=51.33  Aligned_cols=91  Identities=12%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEc-cChHHHHHHHHHccCCC-eEEE-E-eCCCCChh-Hhh-------------cCCccc--CHHHHhccc
Q psy3240          38 PALQNSTVGIVG-CGRIGLSVLEKLIPYKV-SKFL-Y-TSRSKKPE-ADK-------------RGAEHT--NIDDLCKQS   97 (274)
Q Consensus        38 ~~L~gktVGIIG-lG~IG~~iA~~L~~~G~-~vv~-~-~~r~~~~~-a~~-------------~g~~~~--sl~ell~~a   97 (274)
                      ......+||||| .|..|+.+.+.|...-. +... + .+++.-.. ...             ......  +.++.+.++
T Consensus        15 ~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~   94 (381)
T 3hsk_A           15 SHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLEC   94 (381)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGC
T ss_pred             ccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccC
Confidence            445557899999 69999999999987543 3322 2 23322211 110             111111  222256889


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      |+|++|+|... ++.+. .+.   .+.|+.+||.|.
T Consensus        95 Dvvf~alp~~~-s~~~~-~~~---~~~G~~VIDlSa  125 (381)
T 3hsk_A           95 DVVFSGLDADV-AGDIE-KSF---VEAGLAVVSNAK  125 (381)
T ss_dssp             SEEEECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             CEEEECCChhH-HHHHH-HHH---HhCCCEEEEcCC
Confidence            99999999532 22222 122   357899999884

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.89  E-value=0.031  Score=51.21  Aligned_cols=88  Identities=19%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh----c--ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC----K--QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell----~--~aDvVil~lPl  106 (274)
                      .|++|.|.|. |.||..+++.++..|+++++.+.+..+.+ +.+.|+...      ++.+.+    .  ..|+|+.++..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            5899999998 99999999999999997776665443333 455565321      222221    1  47888887642


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                       +    .+ ...++.++++..++.++..
T Consensus       250 -~----~~-~~~~~~l~~~G~iv~~g~~  271 (351)
T 1yb5_A          250 -V----NL-SKDLSLLSHGGRVIVVGSR  271 (351)
T ss_dssp             -H----HH-HHHHHHEEEEEEEEECCCC
T ss_pred             -H----HH-HHHHHhccCCCEEEEEecC
Confidence             1    12 3457778888888888743

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.88  E-value=0.075  Score=51.23  Aligned_cols=103  Identities=15%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChh----Hhh-c-------CCcc-cCHHHHh
Q psy3240          38 PALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADK-R-------GAEH-TNIDDLC   94 (274)
Q Consensus        38 ~~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~-~-------g~~~-~sl~ell   94 (274)
                      ..+.|++|+|+|+-          .-...+++.|...|+++.+||+......    ... .       .+.. .++.+.+
T Consensus       331 ~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (481)
T 2o3j_A          331 NTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAA  410 (481)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHH
T ss_pred             cccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHH
Confidence            35899999999974          5678999999999998888887654221    111 1       1233 3678899


Q ss_pred             cccCEEEEcCCCCcccHHhccH-HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          95 KQSDFIIITSALTPDTHHLINR-ARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        95 ~~aDvVil~lPlt~~T~~li~~-~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +.+|+|++++.-. +-+. ++. +..+.|+...+++|. |+- .|.+.+.+
T Consensus       411 ~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~-~~~~~~~~  457 (481)
T 2o3j_A          411 RGAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RLI-LDQKALRE  457 (481)
T ss_dssp             TTCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SSC-SCHHHHHH
T ss_pred             cCCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CCC-CCHHHHHh
Confidence            9999999988753 3322 344 344567776688987 543 46555443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.87  E-value=0.042  Score=50.07  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=58.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh-------cCC--cc--cCHHHHhcccCEEEEcCCC-
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK-------RGA--EH--TNIDDLCKQSDFIIITSAL-  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~-------~g~--~~--~sl~ell~~aDvVil~lPl-  106 (274)
                      +||+|||.|.||+++|..|...+.  +.+.+|....+..  +.+       .+.  ..  .+..+.++.||+|+++.-. 
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999998865443  4566765442222  111       111  11  1234678999999998742 


Q ss_pred             -Cc-ccHH-hc--cHH-------HHhcCCCCcEEEEcCCCchhcHHHH
Q psy3240         107 -TP-DTHH-LI--NRA-------RLESMKPGAILINTSRGQLVDQEAL  142 (274)
Q Consensus       107 -t~-~T~~-li--~~~-------~l~~mk~gailINv~RG~iVde~aL  142 (274)
                       .| .||. ++  |.+       .+.+-.|+++++.++  .++|.-..
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~t~  126 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTY  126 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--CcchhhHH
Confidence             22 2332 22  222       234446788998886  45555433

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.86  E-value=0.052  Score=48.88  Aligned_cols=76  Identities=21%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC-hh-H------hhcCCcc--------cCHHHHhc--ccCEE
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-A------DKRGAEH--------TNIDDLCK--QSDFI  100 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a------~~~g~~~--------~sl~ell~--~aDvV  100 (274)
                      +..++|.|.|. |.||+.+++.|...|.++++.+++... +. .      ...++..        .++.++++  .+|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            34679999997 999999999999999988777765421 11 1      1233332        14566788  89999


Q ss_pred             EEcCCCC--cccHHhcc
Q psy3240         101 IITSALT--PDTHHLIN  115 (274)
Q Consensus       101 il~lPlt--~~T~~li~  115 (274)
                      +.+....  ..+..+++
T Consensus        88 i~~a~~~n~~~~~~l~~  104 (346)
T 3i6i_A           88 VSTVGGESILDQIALVK  104 (346)
T ss_dssp             EECCCGGGGGGHHHHHH
T ss_pred             EECCchhhHHHHHHHHH
Confidence            9988752  23444543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.85  E-value=0.014  Score=53.19  Aligned_cols=89  Identities=16%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             CCCEEEEEccC-hHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCccc------C----HHHHh--cccCEEEEcCC
Q psy3240          41 QNSTVGIVGCG-RIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEHT------N----IDDLC--KQSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGlG-~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~~------s----l~ell--~~aDvVil~lP  105 (274)
                      .|++|.|+|.| .||..+++.++.. |+++++.+.+..+.+ +.+.|+...      +    +.++.  ...|+|+.++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            58999999999 9999999999998 997776665443333 445555321      2    22333  25799988776


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ....    + ...++.++++..++.++..
T Consensus       250 ~~~~----~-~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          250 SEKT----L-SVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             CHHH----H-TTGGGGEEEEEEEEECCSS
T ss_pred             CHHH----H-HHHHHHHhcCCEEEEECCC
Confidence            3211    1 2346677888888888753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=94.85  E-value=0.049  Score=47.68  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK   77 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~   77 (274)
                      ..++.||++.|.|. |.||+++|+.|...|+++++.+++..+
T Consensus        22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   63 (260)
T 3gem_A           22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA   63 (260)
T ss_dssp             -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            36799999999985 899999999999999988777766543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.85  E-value=0.054  Score=52.76  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc----CCc-ccCHHH-HhcccCEEEEcCCCCcccHHhcc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR----GAE-HTNIDD-LCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~----g~~-~~sl~e-ll~~aDvVil~lPlt~~T~~li~  115 (274)
                      .+++.|+|+|.+|+.+|+.|...|..+++.+...........    ... ...|++ -++++|.++++++..  ..+++-
T Consensus       348 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d--~~ni~~  425 (565)
T 4gx0_A          348 DELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDD--STNIFL  425 (565)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCH--HHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCc--hHHHHH
Confidence            388999999999999999999999988888876654331110    011 112333 368899999999864  344554


Q ss_pred             HHHHhcCCCCcEEEE
Q psy3240         116 RARLESMKPGAILIN  130 (274)
Q Consensus       116 ~~~l~~mk~gailIN  130 (274)
                      ....+.+.+...+|-
T Consensus       426 ~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          426 TLACRHLHSHIRIVA  440 (565)
T ss_dssp             HHHHHHHCSSSEEEE
T ss_pred             HHHHHHHCCCCEEEE
Confidence            556666677644433

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=94.84  E-value=0.081  Score=51.54  Aligned_cols=112  Identities=11%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CCCCEEEEEccChHHHH-HHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHhcccCEEEEc--CCCC-cc
Q psy3240          40 LQNSTVGIVGCGRIGLS-VLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLCKQSDFIIIT--SALT-PD  109 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~-iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell~~aDvVil~--lPlt-~~  109 (274)
                      .++++|-|||.|.+|.+ +|+.|+..|+++.++|.+...+.   ..+.|+...   +.+++...+|+|+..  +|.+ |.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            56899999999999997 79999999998888887654322   345677543   445565679999885  3322 22


Q ss_pred             cHH-------hccH-HHHhc-C-CCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         110 THH-------LINR-ARLES-M-KPG-AILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       110 T~~-------li~~-~~l~~-m-k~g-ailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ...       ++.+ +++.. + ++. .+-|--+-|+.--..-+...|+..|.
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~  149 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI  149 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            211       2222 34443 3 332 34455556888888877788887765

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=94.81  E-value=0.031  Score=50.35  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             EEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHH----h-----cccCEEEEcCCCCcccH
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDL----C-----KQSDFIIITSALTPDTH  111 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~el----l-----~~aDvVil~lPlt~~T~  111 (274)
                      +|.|+|. |.+|...++.++..|+++++.+++..+.+ +++.|+..+ +..+.    +     ...|+|+-++.. + + 
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~-~-~-  229 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-K-Q-  229 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-H-H-
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH-H-H-
Confidence            7999998 99999999999999998777776655555 566776532 32221    1     246888888753 2 1 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                         -...++.++++..++.++.
T Consensus       230 ---~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          230 ---LASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             ---HHHHHTTEEEEEEEEECCC
T ss_pred             ---HHHHHHhhcCCCEEEEEec
Confidence               2456777888888888864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.80  E-value=0.009  Score=53.75  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHc-cCCCeEEEEeCCCCCh----h-Hh-----hcCCcc-cCHHHHhcccCEEEEcC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLI-PYKVSKFLYTSRSKKP----E-AD-----KRGAEH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~-~~G~~vv~~~~r~~~~----~-a~-----~~g~~~-~sl~ell~~aDvVil~l  104 (274)
                      ..+|+|+|+ |.||+.+++.+. .-|++++...++....    . ..     ..++.. .++++++..+|+|+-+.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            358999998 999999999876 4567655444443321    0 11     112222 36788888999999444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.79  E-value=0.13  Score=45.22  Aligned_cols=97  Identities=14%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---H---hhcCCc-------cc---CHHHHhc----
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---A---DKRGAE-------HT---NIDDLCK----   95 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a---~~~g~~-------~~---sl~ell~----   95 (274)
                      ..+++||++.|.|. |-||+++|+.|...|+++++.+.+.....   .   ...+..       ..   +++++++    
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            35799999999995 78999999999999998777666543211   1   111211       11   2333443    


Q ss_pred             ---ccCEEEEcCCCCcc------c----HHh----------ccHHHHhcCCCCcEEEEcCC
Q psy3240          96 ---QSDFIIITSALTPD------T----HHL----------INRARLESMKPGAILINTSR  133 (274)
Q Consensus        96 ---~aDvVil~lPlt~~------T----~~l----------i~~~~l~~mk~gailINv~R  133 (274)
                         ..|+++.+.-....      +    ..+          +-+..++.|+++..+||+++
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence               67999987643211      1    111          12345677888888999876

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.77  E-value=0.086  Score=46.07  Aligned_cols=68  Identities=9%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhc-------ccCEEEEcCCC
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCK-------QSDFIIITSAL  106 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~-------~aDvVil~lPl  106 (274)
                      ++.||++.|.| .|.||+.+|+.|...|+++++.+++.....   .....+.. .+++++++       ..|+|+.+.-.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            58899999998 489999999999999998777766543211   11111111 12333443       58999987653

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.76  E-value=0.036  Score=50.53  Aligned_cols=95  Identities=19%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----CHHHHh------cccCEEEEcCCCCc
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----NIDDLC------KQSDFIIITSALTP  108 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----sl~ell------~~aDvVil~lPlt~  108 (274)
                      .|++|.|+| .|.||..+++.++..|+++++. .+..+.+ +++.|+...    ++.+.+      ...|+|+-++.. +
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            589999999 7999999999999999976665 3333333 555665432    333322      258999998763 1


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEAL  142 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL  142 (274)
                           .-...++.|+++..++.++.....+...+
T Consensus       228 -----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  256 (343)
T 3gaz_A          228 -----VLDASFSAVKRFGHVVSCLGWGTHKLAPL  256 (343)
T ss_dssp             -----HHHHHHHHEEEEEEEEESCCCSCCCCHHH
T ss_pred             -----HHHHHHHHHhcCCeEEEEcccCccccchh
Confidence                 12356677889999998876544444333

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.75  E-value=0.031  Score=50.31  Aligned_cols=84  Identities=13%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             EEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----CH-HHHh-----cccCEEEEcCCCCcccH
Q psy3240          44 TVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----NI-DDLC-----KQSDFIIITSALTPDTH  111 (274)
Q Consensus        44 tVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----sl-~ell-----~~aDvVil~lPlt~~T~  111 (274)
                      +|.|+|. |.+|...++.++..|+++++.+++..+.+ +++.|+...    +. .+.+     ...|+|+-++.. +.  
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-~~--  228 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-RT--  228 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-TT--
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-HH--
Confidence            7999998 99999999999999998777776655555 666776432    11 1111     246888887764 21  


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                         -...++.++++..++.++.
T Consensus       229 ---~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          229 ---LATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             ---HHHHHHTEEEEEEEEECSC
T ss_pred             ---HHHHHHhhccCCEEEEEee
Confidence               2356777888888888764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.74  E-value=0.056  Score=47.39  Aligned_cols=74  Identities=24%  Similarity=0.343  Sum_probs=50.1

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC---hh-H------hhcCCcc--------cCHHHHhcccCEEEE
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK---PE-A------DKRGAEH--------TNIDDLCKQSDFIII  102 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~---~~-a------~~~g~~~--------~sl~ell~~aDvVil  102 (274)
                      .++|.|.|. |.+|+.+++.|...|.++++.+++...   +. .      ...++..        .++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999996 999999999999999877776655332   11 1      1234432        145667889999999


Q ss_pred             cCCCC--cccHHhcc
Q psy3240         103 TSALT--PDTHHLIN  115 (274)
Q Consensus       103 ~lPlt--~~T~~li~  115 (274)
                      +.+..  ..+..+++
T Consensus        84 ~a~~~~~~~~~~l~~   98 (308)
T 1qyc_A           84 TVGSLQIESQVNIIK   98 (308)
T ss_dssp             CCCGGGSGGGHHHHH
T ss_pred             CCcchhhhhHHHHHH
Confidence            88653  23445543

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.74  E-value=0.15  Score=49.63  Aligned_cols=97  Identities=18%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCC---eEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH-HhccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKV---SKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH-HLINRA  117 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~---~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~-~li~~~  117 (274)
                      ++|.|||+|.||+.+|+.+.. .++   ++++.++.....          ++.+... ..++.  ...++... ..+   
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~----------~~~~~~g-~~~~~--~~Vdadnv~~~l---   77 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV----------DVAQQYG-VSFKL--QQITPQNYLEVI---   77 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC----------CHHHHHT-CEEEE--CCCCTTTHHHHT---
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh----------hHHhhcC-CceeE--EeccchhHHHHH---
Confidence            459999999999999999864 444   456665433221          2222222 22322  23333321 111   


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                       -+.++++-++||++  .....-+++++..+.|+.++|+..
T Consensus        78 -~aLl~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           78 -GSTLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -GGGCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -HHHhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence             12345557888866  233556777777778888888664

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.74  E-value=0.13  Score=45.71  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-------HhhcCC-------cccC---HHHHh-----
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-------ADKRGA-------EHTN---IDDLC-----   94 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-------a~~~g~-------~~~s---l~ell-----   94 (274)
                      .+++||++.|.|. |-||+++|+.|...|+++++.+.+.....       ....+.       ...+   .++++     
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5789999999985 89999999999999997766654422111       011121       1112   22233     


Q ss_pred             --cccCEEEEcCCCCcc-------c----HHh----------ccHHHHhcCCCCcEEEEcCCCc
Q psy3240          95 --KQSDFIIITSALTPD-------T----HHL----------INRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus        95 --~~aDvVil~lPlt~~-------T----~~l----------i~~~~l~~mk~gailINv~RG~  135 (274)
                        ...|+++.+.-....       +    ..+          +.+..++.|+++..|||+++..
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~  188 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence              367999987653211       1    111          1234567888888999998754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.72  E-value=0.074  Score=46.66  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCC-CeEEEEeCCCCChh---HhhcCCcc--------cCHHHHhcccCEEEEcCC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYK-VSKFLYTSRSKKPE---ADKRGAEH--------TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~---a~~~g~~~--------~sl~ell~~aDvVil~lP  105 (274)
                      .++|.|.|. |.||+.+++.|...| .++++.+++..+..   ....++..        .++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999998888 87777776654432   12234432        145667889999998875

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.71  E-value=0.16  Score=44.89  Aligned_cols=50  Identities=14%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccC-CCeEEEEeCCCCChhHhhcCCcccCHHHHhc-ccCEEEEcC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPY-KVSKFLYTSRSKKPEADKRGAEHTNIDDLCK-QSDFIIITS  104 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~-~aDvVil~l  104 (274)
                      .+|+|+|+ |.||+.+++.+... +++++...++..            ++++++. .+|+|+-+.
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~------------dl~~~~~~~~DvvIDfT   53 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD------------PLSLLTDGNTEVVIDFT   53 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC------------CTHHHHHTTCCEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC------------CHHHHhccCCcEEEEcc
Confidence            37999996 99999999998755 887766655432            3444443 567777444

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=94.71  E-value=0.045  Score=51.41  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      -.++.|+|.|.+|+++|+.++.+|++++++|+|.....           .+-+..+|-++...|          .+.+..
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-----------~~~fp~a~~v~~~~p----------~~~~~~  257 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-----------KHFFPDADEIIVDFP----------ADFLRK  257 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-----------GGGCTTCSEEEESCH----------HHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-----------cccCCCceEEecCCH----------HHHHhh
Confidence            35799999999999999999999999999998754211           112345665655433          122333


Q ss_pred             --CCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240         122 --MKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH  162 (274)
Q Consensus       122 --mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~  162 (274)
                        +.+++.+|=+.++.-.|...|...|+. ...||.+....++
T Consensus       258 ~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R  299 (362)
T 3on5_A          258 FLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKER  299 (362)
T ss_dssp             SCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHH
T ss_pred             cCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHH
Confidence              678899999999998999999988865 6777777775544

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.70  E-value=0.037  Score=50.44  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~   75 (274)
                      ..|++++|.|||+|.+|..+|+.|...|... .++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            5689999999999999999999999888754 4455433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	7e-16
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	1e-14
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-12
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	1e-10
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-09
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-08
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	5e-09
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	6e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	4e-05
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	7e-04
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	0.004

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 71.5 bits (174), Expect = 7e-16
 Identities = 57/212 (26%), Positives = 80/212 (37%), Gaps = 59/212 (27%)

Query: 30  WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
           W  +   G  +   TVG+VG GRIG  V +++  +      Y        A + G E  +
Sbjct: 32  WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS 91

Query: 90  IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149
           +DDL  ++DFI +    TP+T  LI++  L   KPG I++N +R                
Sbjct: 92  LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR---------------- 135

Query: 150 RVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKI 209
                        L     L D+   GHV A                             
Sbjct: 136 -----------GGLVDEAALADAITGGHVRA----------------------------- 155

Query: 210 RGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241
             AGLDV   EP   DSPL +L   V+ PH+G
Sbjct: 156 --AGLDVFATEPCT-DSPLFELAQVVVTPHLG 184

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 61/222 (27%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
              W  W P  + G  L N T+GI G G IG ++ ++   + +    + +        A 
Sbjct: 29  TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS 88

Query: 82  KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
            +   H ++D L   S F  + +  TP+T +  N+A ++S+  GAI++NT+RG       
Sbjct: 89  YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG------- 141

Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
                                L     +  +   G ++   F                  
Sbjct: 142 --------------------DLVDNELVVAALEAGRLAYAGF------------------ 163

Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA 243
           DV                EP  ++     L N  + PHIGSA
Sbjct: 164 DVFA-------------GEP-NINEGYYDLPNTFLFPHIGSA 191

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 61.6 bits (148), Expect = 3e-12
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241
           +++      +    + +  L++ ++ G   DV +P+P P D P   +    + PHI 
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHIS 187

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 45/224 (20%), Positives = 68/224 (30%), Gaps = 64/224 (28%)

Query: 24  RGEWKS----WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
            G                  ++  T+GI+G GR+G +V  +   +  +   Y        
Sbjct: 27  EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 86

Query: 80  ADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
               G +  + + DL   SD + +   L    HHLIN   ++ M+ GA L+N        
Sbjct: 87  ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN------TA 140

Query: 139 QEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIF 198
           +  L+D  A                                                   
Sbjct: 141 RGGLVDEKA--------------------------------------------------- 149

Query: 199 SASDVLKAKKIRGAGLDVMYPEPLPL-DSPLLQLDNCVILPHIG 241
             +  LK  +IRGA LDV   EP      PL    N +  PH  
Sbjct: 150 -LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 202 DVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIG 241
           D L +K + GA +DV   EP     P  SPL + DN ++ PHIG
Sbjct: 144 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 24  RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
           RG     A         +     +   G   +     ++   +  ++Y    +       
Sbjct: 29  RGVGNKLAAGSFEARGKK-----LGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGN 83

Query: 84  GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
             +  ++ DL   SD + +     P T +++    +  MKPG++LIN SRG +VD  AL 
Sbjct: 84  ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 143

Query: 144 DFIADIRVI 152
           D +A   + 
Sbjct: 144 DALASKHLA 152

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 52.5 bits (124), Expect = 5e-09
 Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 1/62 (1%)

Query: 181 FIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMY-PEPLPLDSPLLQLDNCVILPH 239
                 +      +        +LK +       DV +       D+    L N V  P 
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178

Query: 240 IG 241
           + 
Sbjct: 179 VA 180

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 43.7 bits (101), Expect = 6e-06
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL-------------PLDSPLLQL 231
            +I      +    +    LK+ K+ G G+D    E               PL   LL +
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187

Query: 232 DNCVILPHIG 241
            N V+ PHI 
Sbjct: 188 PNVVLSPHIA 197

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 9/116 (7%)

Query: 32  PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNI 90
           P F     L++    IVG G +       L+       +                  T +
Sbjct: 5   PIFC---QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLV 61

Query: 91  DDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
           +    ++       A+       +N+   ++ +   I  N      VD      FI
Sbjct: 62  EGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKAASFI 112

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 13/70 (18%)

Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP-------------LPLDSPLLQL 231
            ++      +    +    L + KI G  +DV   E                  + L+  
Sbjct: 127 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 186

Query: 232 DNCVILPHIG 241
            N ++ P   
Sbjct: 187 PNVLVTPKTA 196

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 40  LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNI-----DDLC 94
            Q   V I+G G  GLS ++  +   V+  +  +R   P  DK             D+  
Sbjct: 3   YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWL 62

Query: 95  KQSDFIIITSALTPDTHHLINRAR 118
             +D I+ +  +    H  ++ A 
Sbjct: 63  MAADLIVASPGIALA-HPSLSAAA 85

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 45  VGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAE------HTNIDDLCKQ 96
           V I+G G IG  ++ K++     +            +   R         +  ++ L K 
Sbjct: 7   VAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKL 66

Query: 97  SDF--IIITSALTPDTHHLINRARLESMKPGAILINTSR---GQLVDQEALIDFIADIRV 151
            +F  I      T  + H+ N A L   KPG  LI+ +    G        ++       
Sbjct: 67  PEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKL- 125

Query: 152 ISISMVTN 159
            +++MVT 
Sbjct: 126 -NVNMVTY 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.67
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.66
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.65
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.62
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.58
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.46
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.45
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.4
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.36
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	99.35
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.14
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	99.13
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.0
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.86
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.82
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.7
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.66
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.59
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.44
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.23
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.22
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.2
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.17
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.13
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.06
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.03
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.03
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.02
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.0
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.93
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.88
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.87
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.8
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.77
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.75
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.7
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.66
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.61
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.6
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.57
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.5
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.49
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.46
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.36
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.3
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.28
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.23
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.14
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.13
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.1
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.09
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.06
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.05
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.02
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.96
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.92
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.92
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.84
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.83
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.81
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.8
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.79
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.77
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.76
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.75
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.73
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.73
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.73
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.72
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.71
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.61
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.58
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.55
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.54
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.52
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.52
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.51
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.49
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.49
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.38
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.3
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.27
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.26
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.25
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.12
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.09
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.07
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.01
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.99
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.92
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.85
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.79
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.69
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.66
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.65
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.29
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.29
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.28
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.2
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.19
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.17
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.14
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.07
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.0
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.97
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.97
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.94
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.9
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.85
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.83
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.79
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.77
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.77
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.67
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	94.65
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.59
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.57
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.56
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.54
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.49
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.48
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.35
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.35
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.28
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.26
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.22
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.14
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.12
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.1
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.1
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.06
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.99
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.86
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	93.85
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.79
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.73
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.7
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.61
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.6
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.59
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.58
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.55
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	93.55
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	93.34
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.31
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.3
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.29
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.25
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.09
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.09
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.07
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.07
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.05
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.98
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.95
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.94
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.91
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.9
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.84
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.84
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.77
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.69
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.68
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.65
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.64
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.53
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.45
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.44
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.38
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.35
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.33
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.86
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.86
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.82
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	91.8
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.78
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.65
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.65
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.6
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.6
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.57
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.45
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.42
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.29
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.28
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.2
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.11
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.5
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.37
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.33
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.07
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.74
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.71
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.69
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.54
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.47
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.33
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.13
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.12
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.07
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	89.05
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.88
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.87
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.75
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.64
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.46
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.2
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.09
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	87.83
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	87.79
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.77
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.7
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.5
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.28
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	87.23
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.94
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.54
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	86.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.13
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	86.12
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	86.11
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.9
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.76
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.76
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	85.72
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.58
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	85.46
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.01
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.94
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.83
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	84.72
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	84.53
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	84.43
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.42
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	84.36
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.29
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.14
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	83.99
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	83.93
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	83.69
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	83.67
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.39
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.3
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.22
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	82.98
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.91
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	82.59
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.46
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	82.42
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.41
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.37
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.37
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.22
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	81.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.88
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.83
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	81.66
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.65
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	81.22
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	80.92
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	80.92
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	80.91
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.62
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	80.45
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	80.37

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=5.5e-46  Score=321.73  Aligned_cols=177  Identities=29%  Similarity=0.539  Sum_probs=157.7

Q ss_pred             HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC
Q psy3240           8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG   84 (274)
Q Consensus         8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g   84 (274)
                      .++|++.|.+  .....++|.|+.|.+..+.|++++|+++||||+|+||+.+|+++++|||++++|++...... ....+
T Consensus        11 ~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~   90 (191)
T d1gdha1          11 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ   90 (191)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhccc
Confidence            3678888888  45666789999988877889999999999999999999999999999998777776555443 33333


Q ss_pred             -CcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240          85 -AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL  163 (274)
Q Consensus        85 -~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~  163 (274)
                       ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++                   
T Consensus        91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~-------------------  151 (191)
T d1gdha1          91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVA-------------------  151 (191)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHH-------------------
T ss_pred             ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHH-------------------
Confidence             344689999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240         164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA  243 (274)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~  243 (274)
                                                             ||++|+|+||+||||++|| +.++|||.+|||++|||+|++
T Consensus       152 ---------------------------------------aL~~g~i~~a~lDV~~~EP-~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         152 ---------------------------------------ALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             ---------------------------------------HHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTC
T ss_pred             ---------------------------------------HHHcCCceEEEEECCCCCC-CCCchHHcCCCEEECCccccC
Confidence                                                   9999999999999999999 568899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.9e-45  Score=316.28  Aligned_cols=171  Identities=35%  Similarity=0.605  Sum_probs=151.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|+..|.+  .....+.|.|+..   .+.|.++.|+++||+|+|.||+.+|+++++|||++++|++..........++.
T Consensus        12 liL~~~R~i~~~~~~~~~~~W~~~---~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~   88 (184)
T d1ygya1          12 LLLAASRQIPAADASLREHTWKRS---SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE   88 (184)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCGG---GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCE
T ss_pred             HHHHHHcCHHHHHHHHHhCCCCcc---ccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhcCce
Confidence            566777777  4445567899653   24678999999999999999999999999999977766655443335566777


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..+++|++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||++||++                      
T Consensus        89 ~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~----------------------  146 (184)
T d1ygya1          89 LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALAD----------------------  146 (184)
T ss_dssp             ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHH----------------------
T ss_pred             eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHH----------------------
Confidence            7899999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG  241 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~  241 (274)
                                                          ||++|+|+||+||||++||+| ++|||++|||++|||+|
T Consensus       147 ------------------------------------aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         147 ------------------------------------AITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             ------------------------------------HHHTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred             ------------------------------------HHhcCcEeEEEEeCCCCCCCC-CchHhcCCCEEECCCCC
Confidence                                                999999999999999999997 89999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=7.3e-45  Score=315.18  Aligned_cols=176  Identities=28%  Similarity=0.444  Sum_probs=154.1

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCC----CCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAP----NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK   82 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~----~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~   82 (274)
                      ++|+..|.+  .....++|.|.++..    ....|.+|+||+|||||+|+||+.+|+++++|||++++|++.........
T Consensus        10 liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~   89 (193)
T d1mx3a1          10 HILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA   89 (193)
T ss_dssp             HHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH
T ss_pred             HHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccCcccccchhh
Confidence            567888887  455667899975321    12457899999999999999999999999999998777776655443445


Q ss_pred             cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccc
Q psy3240          83 RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK  161 (274)
Q Consensus        83 ~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~  161 (274)
                      .++... +++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++                 
T Consensus        90 ~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~-----------------  152 (193)
T d1mx3a1          90 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQ-----------------  152 (193)
T ss_dssp             HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHH-----------------
T ss_pred             hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHH-----------------
Confidence            566554 89999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCC-CCCccccCCcEEEccCC
Q psy3240         162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLP-LDSPLLQLDNCVILPHI  240 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~-~~~~l~~~~nvi~tPH~  240 (274)
                                                               +|++|+|+||+||||++||+| .++||+.+|||++|||+
T Consensus       153 -----------------------------------------aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHi  191 (193)
T d1mx3a1         153 -----------------------------------------ALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHA  191 (193)
T ss_dssp             -----------------------------------------HHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSC
T ss_pred             -----------------------------------------HHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCc
Confidence                                                     999999999999999999987 57899999999999999


Q ss_pred             CC
Q psy3240         241 GS  242 (274)
Q Consensus       241 ~~  242 (274)
                      |+
T Consensus       192 A~  193 (193)
T d1mx3a1         192 AW  193 (193)
T ss_dssp             TT
T ss_pred             Cc
Confidence            86

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=5.6e-44  Score=307.51  Aligned_cols=175  Identities=28%  Similarity=0.507  Sum_probs=151.9

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA   85 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~   85 (274)
                      ++|...|.+  .....++|.|+.+.. ...+++|.|++|||||+|+||+.+|++|++|||+++.|++...... ....+.
T Consensus        10 ~iL~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~   88 (188)
T d2naca1          10 MILSLVRNYLPSHEWARKGGWNIADC-VSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL   88 (188)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHH-HTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHhCHHHHHHHHHhCCCCCccc-CCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccc
Confidence            467777776  444556799975422 2346899999999999999999999999999997666665544443 444455


Q ss_pred             c-ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240          86 E-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH  164 (274)
Q Consensus        86 ~-~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~  164 (274)
                      . ..+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++                    
T Consensus        89 ~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~--------------------  148 (188)
T d2naca1          89 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVAR--------------------  148 (188)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHH--------------------
T ss_pred             cccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHH--------------------
Confidence            4 4589999999999999999999999999999999999999999999999999999999                    


Q ss_pred             ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240         165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                                                            ||++|+++||+||||++||+|.++||+.+||+++|||+||
T Consensus       149 --------------------------------------aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         149 --------------------------------------ALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             --------------------------------------HHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             --------------------------------------HHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence                                                  9999999999999999999999999999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=5.7e-44  Score=310.57  Aligned_cols=173  Identities=30%  Similarity=0.460  Sum_probs=149.6

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|.+.|.+  .....++|.|+...  ...|++|.||+|||||+|+||+.+|++|++|||++++|+++.....  .....
T Consensus        12 ~iL~l~R~~~~~~~~~~~g~w~~~~--~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~--~~~~~   87 (199)
T d1dxya1          12 DTLYLLRNMGKVQAQLQAGDYEKAG--TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD--HPDFD   87 (199)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCHHHHT--CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC--CTTCE
T ss_pred             HHHHHHhCHHHHHHHHHhCCCCccc--CcccccccceeeeeeecccccccccccccccceeeeccCCccchhh--hcchh
Confidence            566777776  33455679997532  2468999999999999999999999999999998888876544322  22345


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++                      
T Consensus        88 ~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~----------------------  145 (199)
T d1dxya1          88 YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLS----------------------  145 (199)
T ss_dssp             ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHH----------------------
T ss_pred             HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHH----------------------
Confidence            6699999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC-------------CCCCccccCCc
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL-------------PLDSPLLQLDN  233 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~-------------~~~~~l~~~~n  233 (274)
                                                          ||++|+|+||+||||++||+             |..++|+.+||
T Consensus       146 ------------------------------------aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~n  189 (199)
T d1dxya1         146 ------------------------------------NLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN  189 (199)
T ss_dssp             ------------------------------------HHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTT
T ss_pred             ------------------------------------HHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCC
Confidence                                                99999999999999999997             33467889999


Q ss_pred             EEEccCCCCC
Q psy3240         234 CVILPHIGSA  243 (274)
Q Consensus       234 vi~tPH~~~~  243 (274)
                      |++|||+|++
T Consensus       190 viiTPHiagy  199 (199)
T d1dxya1         190 VVLSPHIAYY  199 (199)
T ss_dssp             EEECSSCTTC
T ss_pred             EEECCccccC
Confidence            9999999986

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=3e-43  Score=306.00  Aligned_cols=172  Identities=29%  Similarity=0.478  Sum_probs=148.0

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|+++|.+  ......+|+|+ |.+  ..|++|.|++|||||+|+||+.+|++|++|||++++|++. .+......+..
T Consensus        11 ~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~-~~~~~~~~~~~   86 (197)
T d1j4aa1          11 QAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYY   86 (197)
T ss_dssp             HHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CCHHHHHTTCB
T ss_pred             HHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhHhhhcccccccCcc-cccccccceee
Confidence            467777877  22234568884 544  3689999999999999999999999999999977766654 44443344556


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++                      
T Consensus        87 ~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~----------------------  144 (197)
T d1j4aa1          87 VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIR----------------------  144 (197)
T ss_dssp             CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH----------------------
T ss_pred             eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHH----------------------
Confidence            6699999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCC-------------CCCCCCccccCCc
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPE-------------PLPLDSPLLQLDN  233 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~e-------------p~~~~~~l~~~~n  233 (274)
                                                          ||++|+++||+||||++|             |+|.++||+.+||
T Consensus       145 ------------------------------------aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~n  188 (197)
T d1j4aa1         145 ------------------------------------GLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN  188 (197)
T ss_dssp             ------------------------------------HHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTT
T ss_pred             ------------------------------------HHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCC
Confidence                                                999999999999999999             4555678999999


Q ss_pred             EEEccCCCC
Q psy3240         234 CVILPHIGS  242 (274)
Q Consensus       234 vi~tPH~~~  242 (274)
                      |++|||+|+
T Consensus       189 viiTPHiA~  197 (197)
T d1j4aa1         189 VLVTPKTAF  197 (197)
T ss_dssp             EEECSSCTT
T ss_pred             EEeCcccCc
Confidence            999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-42  Score=295.28  Aligned_cols=171  Identities=30%  Similarity=0.508  Sum_probs=138.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|.+.|.+  ......+|.|+++..   .+.+|.|++|||||+|.||+.+|+++++|||++++|+++.....  .....
T Consensus        12 ~il~l~R~~~~~~~~~~~~~w~~~~~---~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~--~~~~~   86 (188)
T d1sc6a1          12 ELLLLLRGVPEANAKAHRGVGNKLAA---GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL--GNATQ   86 (188)
T ss_dssp             HHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC--TTCEE
T ss_pred             HHHHHHhChHHHHHHHHhCCCccccc---ccccccceEEEEeecccchhhhhhhcccccceEeeccccccchh--hhhhh
Confidence            456777776  334556789976443   46799999999999999999999999999998777765443221  11223


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..+++|++++||+|++|+|++++|+++|+++.|++||++++|||+|||++||++||++                      
T Consensus        87 ~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~----------------------  144 (188)
T d1sc6a1          87 VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALAD----------------------  144 (188)
T ss_dssp             CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHH----------------------
T ss_pred             hhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHH----------------------
Confidence            3589999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC----CCCCccccCCcEEEccCCCC
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~----~~~~~l~~~~nvi~tPH~~~  242 (274)
                                                          ||++|++.+|+||||++||+    |..+||+++|||++|||+||
T Consensus       145 ------------------------------------aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         145 ------------------------------------ALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ------------------------------------HHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             ------------------------------------HHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence                                                99999999999999999998    55679999999999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.2e-41  Score=290.47  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=143.7

Q ss_pred             HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240           9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE   86 (274)
Q Consensus         9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~   86 (274)
                      ++|...|.+  .....++|+|.+..    ..+.|.||+|||||+|.||+.+|+++++|||++++|++.....    ....
T Consensus        11 liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~----~~~~   82 (181)
T d1qp8a1          11 LLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG----PWRF   82 (181)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS----SSCC
T ss_pred             HHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeeeecccccccccccccccc----ceee
Confidence            566777777  34455678996532    2257999999999999999999999999999777666543321    1122


Q ss_pred             ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240          87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV  166 (274)
Q Consensus        87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~  166 (274)
                      ..+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++                      
T Consensus        83 ~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~----------------------  140 (181)
T d1qp8a1          83 TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLR----------------------  140 (181)
T ss_dssp             BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH----------------------
T ss_pred             eechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhh----------------------
Confidence            3489999999999999999999999999999999999999999999999999999999                      


Q ss_pred             eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCC-CCCCCCCccccCCcEEEccCCCC
Q psy3240         167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYP-EPLPLDSPLLQLDNCVILPHIGS  242 (274)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~-ep~~~~~~l~~~~nvi~tPH~~~  242 (274)
                                                          ||++|++++|++||+++ ||++.++||+++|||++|||+||
T Consensus       141 ------------------------------------aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         141 ------------------------------------ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             ------------------------------------HHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             ------------------------------------hcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence                                                99999999999999975 47788999999999999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.67  E-value=2.1e-16  Score=130.03  Aligned_cols=147  Identities=18%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|||||+|+||+++|+.|+..|.++++|+++....+ +.+.+..  ..+..+.+++||+|++++|. ..+..++. +..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~-~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLE-KLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHH-HHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhh-hhh
Confidence            5899999999999999999999998887765433333 4555643  23556788999999999995 46777774 677


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS  199 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (274)
                      +.+++++++++++..+........+                                ....|++.||+.|.+        
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~~~--------------------------------~~~~~~~~h~~~~~~--------  118 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPASQ--------------------------------LWSGFIGGHPMAGTA--------  118 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHHHH--------------------------------HSTTCEEEEECCCCS--------
T ss_pred             hhcccccceeeccccchHHHHHHHH--------------------------------hhcccccceeeeccc--------
Confidence            8899999999998876554444444                                123588999999986        


Q ss_pred             hhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHH
Q psy3240         200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQE  250 (274)
Q Consensus       200 ~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~  250 (274)
                           .+|..             .+...|+....+++||+.++.. ++.+.
T Consensus       119 -----~~g~~-------------~a~~~l~~~~~~il~~~~~~~~-~~~~~  150 (165)
T d2f1ka2         119 -----AQGID-------------GAEENLFVNAPYVLTPTEYTDP-EQLAC  150 (165)
T ss_dssp             -----CSSGG-------------GCCTTTTTTCEEEEEECTTCCH-HHHHH
T ss_pred             -----ccchh-------------hhcccccCCCeEEEEeCCCCCH-HHHHH
Confidence                 23322             2346788999999999866553 44443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.66  E-value=6.1e-16  Score=127.40  Aligned_cols=147  Identities=17%  Similarity=0.131  Sum_probs=105.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCcc---cCHHH-HhcccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAEH---TNIDD-LCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~~---~sl~e-ll~~aDvVil~lPlt~~T~~li~  115 (274)
                      |+|+|||+|.||.++|+.|+..|.  ++++||++....+ +.+.+...   .+.++ ....+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            579999999999999999998875  5566665443333 55566532   24443 33579999999994 3455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY  195 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  195 (274)
                      .+..+.++++++++++++....-.+++.+.+                               +..|+++||++|++    
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~-------------------------------~~~~i~~hPm~G~e----  124 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENIL-------------------------------GKRFVGGHPIAGTE----  124 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHH-------------------------------GGGEECEEEECCCS----
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhh-------------------------------cccccccccccccc----
Confidence            3566778999999999997766666665532                               23699999999998    


Q ss_pred             eehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHH
Q psy3240         196 FIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQ  249 (274)
Q Consensus       196 ~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~  249 (274)
                               .+|.-.             ++..|++..++++|||-.. +.++.+
T Consensus       125 ---------~sG~~~-------------a~~~Lf~g~~~il~p~~~~-~~~~~~  155 (171)
T d2g5ca2         125 ---------KSGVEY-------------SLDNLYEGKKVILTPTKKT-DKKRLK  155 (171)
T ss_dssp             ---------CCSGGG-------------CCSSTTTTCEEEECCCSSS-CHHHHH
T ss_pred             ---------cccHHH-------------HHHHhhCCCeEEEecCCCC-CHHHHH
Confidence                     444432             4567999999999999765 334444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=1.1e-16  Score=132.10  Aligned_cols=115  Identities=21%  Similarity=0.283  Sum_probs=97.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||+.+|++|...|.++++|++...+.+ ..+.+.... +..|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            5799999999999999999999997777765444333 455666554 899999999999999999999888773  357


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV  157 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~  157 (274)
                      +..+++|.++||+++..+-....+.+.++++|+.|+|+-
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAP  119 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceeccc
Confidence            888999999999999999999999999999999999853

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.5e-16  Score=128.38  Aligned_cols=104  Identities=19%  Similarity=0.298  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +..|.||+++|+|+|.||+.+|++++++||++++++..+.+.. +...|....++++++..+|+++++.    .++++|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~   94 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIIL   94 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBC
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchh
Confidence            4679999999999999999999999999998888776543333 5567888889999999999998865    4678899


Q ss_pred             HHHHhcCCCCcEEEEcCC-CchhcHHHHHh
Q psy3240         116 RARLESMKPGAILINTSR-GQLVDQEALID  144 (274)
Q Consensus       116 ~~~l~~mk~gailINv~R-G~iVde~aL~~  144 (274)
                      .+.|++||+|+++.|++. ..-+|.++|.+
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhh
Confidence            999999999999999974 55579999887

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.58  E-value=1.8e-15  Score=124.91  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=96.7

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR  118 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~  118 (274)
                      ++|||||+|.||.++|++|...|.++.+|+++..+.. ....+.... ++.|+++.+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            5899999999999999999999997777765444333 455566544 899999999999999999888887763  347


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      +..+++|.++||+++..+-....+.+.++++|+.|+|+
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEec
Confidence            78899999999999999999999999999999999985

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.46  E-value=6.9e-14  Score=116.51  Aligned_cols=114  Identities=11%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC--------cc-cCHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA--------EH-TNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~--------~~-~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .++|||||+|+||.+||++|...|.++++|+++..+.+ ..+.+.        .. .++.+.+..+|++++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            46799999999999999999999998777765544333 222222        11 256677888999999999988887


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      .++ .+.++.+++|.++||+++..+-+...+.+.++++|+.|+|+
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda  125 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS  125 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence            765 46888999999999999999999999999999999998884

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=4.9e-14  Score=115.23  Aligned_cols=111  Identities=12%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESM  122 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~m  122 (274)
                      ||||||+|+||..||++|...|. .++|++...+.. ..+.+....+..+.+.++|++++++|..++..... ...++.+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            69999999999999999998888 556655444333 22222233444567778999999999877766554 5788999


Q ss_pred             CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240         123 KPGAILINTSRGQLVDQEALIDFIADIRVISISM  156 (274)
Q Consensus       123 k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~  156 (274)
                      +++.++||+++..+-....+.+.++++|+.|+|+
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCeEEec
Confidence            9999999999999999999999999999999996

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.40  E-value=4.6e-13  Score=111.36  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=86.9

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      --|.||++.|+|||.+|+.+|++++++|++++++...+-+.. +...|++..+++|+++.+|+++.++..    +++|+.
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn----~~vI~~   94 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGN----VDVIKL   94 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSS----SSSBCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCC----CccccH
Confidence            458999999999999999999999999997777765443332 666788888999999999999998764    357999


Q ss_pred             HHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240         117 ARLESMKPGAILINTSRGQL-VDQEALID  144 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~i-Vde~aL~~  144 (274)
                      +.|.+||+|+++.|++.... +|.++|.+
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99999999999999999765 47777765

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=3.4e-12  Score=103.07  Aligned_cols=109  Identities=13%  Similarity=0.165  Sum_probs=84.3

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      ...-++|+||| +|.||+++|++|+..|.++.+|+.+...           +.++.++.+|++++++|.. .+.. +-.+
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~-v~~~   72 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPIN-LTLE-TIER   72 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGG-GHHH-HHHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchh-hhee-eeec
Confidence            45667999999 9999999999999999988887754321           2456778999999999963 3333 3457


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                      .++.++++++++|+++.+..-.+++.+.                               ....|+..||++|.+
T Consensus        73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~-------------------------------~~~~~v~~hP~~Gp~  115 (152)
T d2pv7a2          73 LKPYLTENMLLADLTSVKREPLAKMLEV-------------------------------HTGAVLGLHPMFGAD  115 (152)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHHH-------------------------------CSSEEEEEEECSCTT
T ss_pred             ccccccCCceEEEecccCHHHHHHHHHH-------------------------------ccCCEEEecccCCCc
Confidence            8889999999999998765555555441                               123689999999997

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=99.35  E-value=3.1e-13  Score=113.01  Aligned_cols=130  Identities=13%  Similarity=0.198  Sum_probs=104.9

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---CCcc-----cCHHHHhcccCEEEEcCCC-Cc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---GAEH-----TNIDDLCKQSDFIIITSAL-TP  108 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---g~~~-----~sl~ell~~aDvVil~lPl-t~  108 (274)
                      .+.-.+|.|||.|..|...++.++++|+.+.++|.+....+ ....   ..+.     ..+++.+++||+|+.++-. ..
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46778999999999999999999999999999998766544 2111   1221     2578889999999988753 34


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeeccc
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIM  188 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  188 (274)
                      ....+|.++.++.||||+++||++    +|+---.+                  +|+++|+++|.|..|+..+||+.++|
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva----idqGG~~E------------------ts~ptt~~~p~~~~~gV~~y~v~N~P  166 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA----VDQGGCVE------------------TLHPTSHTQPTYEVFGVVHYGVPNMP  166 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT----CTTCCSBT------------------TCCCCCSSSCEEEETTEEEECCSCGG
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee----cCCCCccc------------------cCCCCcccCCeEEECCEEEEecCCCC
Confidence            567899999999999999999998    33322233                  78999999999999999999999999


Q ss_pred             CC
Q psy3240         189 GD  190 (274)
Q Consensus       189 ~~  190 (274)
                      |+
T Consensus       167 ga  168 (168)
T d1pjca1         167 GA  168 (168)
T ss_dssp             GG
T ss_pred             CC
Confidence            85

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.25  E-value=3.3e-12  Score=103.55  Aligned_cols=103  Identities=11%  Similarity=0.055  Sum_probs=75.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLE  120 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~  120 (274)
                      ++|||||+|+||+.+|++|+..|.++++++++..+.. ....+... .+++|++++||+|++|+|...... .+ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            5899999999999999999999997776665554433 33223333 378999999999999999754433 32 12233


Q ss_pred             cCCCCcEEEEcCCCchhcHHHHHhhhhhh
Q psy3240         121 SMKPGAILINTSRGQLVDQEALIDFIADI  149 (274)
Q Consensus       121 ~mk~gailINv~RG~iVde~aL~~~L~~~  149 (274)
                      .  .+.++|+++.......+.+.+.+++.
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhcc
Confidence            2  36799999999888888888866543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.14  E-value=4.9e-11  Score=98.50  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--------c-cCH---HHHhcccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--------H-TNI---DDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--------~-~sl---~ell~~aDvVil~lPlt~~  109 (274)
                      ++|||||+|+||..+|++|...|.++.+||+...+.. ..+.+..        . .+.   -..+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5799999999999999999999998877765444333 2222221        1 133   3455788999999998777


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      ....++ .....++++.++||+++...-+...+.+.|.+.++.|+|+-.
T Consensus        82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv  129 (178)
T d1pgja2          82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI  129 (178)
T ss_dssp             HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccc
Confidence            776664 567778999999999999999999999999999999998543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.13  E-value=7.9e-11  Score=99.44  Aligned_cols=125  Identities=16%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------------------------------
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------------------------------   88 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------------------------------   88 (274)
                      +.-.+|.|||.|..|...++.++++|+.+.++|.+....+ ....+..+.                              
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            4567999999999999999999999999889998877655 444433221                              


Q ss_pred             CHHHHhcccCEEEEcCCC-CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccccee
Q psy3240          89 NIDDLCKQSDFIIITSAL-TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVF  167 (274)
Q Consensus        89 sl~ell~~aDvVil~lPl-t~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~  167 (274)
                      .+.+.+++||+|+.++-. ......+++++.++.||||+++||++    +|.---.+                      +
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva----idqGGn~E----------------------t  160 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA----VEAGGNCP----------------------L  160 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT----GGGTCSST----------------------T
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe----ecCCCccc----------------------c
Confidence            134558899999966543 23355688999999999999999997    22211112                      5


Q ss_pred             ecCCCcccCccceeeeeecccCC
Q psy3240         168 TLGDSFHKGHVSAFIFIHMIMGD  190 (274)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~i~~~  190 (274)
                      |+.++.+..|++.+||..+|||.
T Consensus       161 s~~~~~~~~~gV~~~gv~NiPsr  183 (183)
T d1l7da1         161 SEPGKIVVKHGVKIVGHTNVPSR  183 (183)
T ss_dssp             CCTTCEEEETTEEEECCSSGGGG
T ss_pred             CcCCCEEEECCEEEEeeCCCCCC
Confidence            67788999999999999999973

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=3.8e-10  Score=91.62  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|||||+|+||+++++.|...|.++++++++..+..  ..+.|+... +.+|+++.||+|+++++.  +.   + .+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp--~~---~-~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP--QL---F-ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG--GG---H-HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch--Hh---H-HHHh
Confidence            5799999999999999999988987766655433333  345677665 899999999999999963  21   1 4567


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         120 ESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       120 ~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +.++++.++|++..|-  ..+.|.+
T Consensus        75 ~~l~~~~~iis~~agi--~~~~l~~   97 (152)
T d2ahra2          75 KPLHFKQPIISMAAGI--SLQRLAT   97 (152)
T ss_dssp             TTSCCCSCEEECCTTC--CHHHHHH
T ss_pred             hhcccceeEecccccc--cHHHHHh
Confidence            8899999999998773  4444555

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=1.6e-09  Score=90.68  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      -|++|+|+|||+|.-|++=|.+|+..|.++++.-+...+..  +.+.|.+..+++|+.+.||+|.+.+|. +....+..+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD-~~q~~vy~~   91 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPD-EFQGRLYKE   91 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCH-HHHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecch-HHHHHHHHH
Confidence            36899999999999999999999999997777655544332  677899888999999999999999994 445567777


Q ss_pred             HHHhcCCCCcEEE
Q psy3240         117 ARLESMKPGAILI  129 (274)
Q Consensus       117 ~~l~~mk~gailI  129 (274)
                      +..+.||+|+.+.
T Consensus        92 ~I~p~lk~g~~L~  104 (182)
T d1np3a2          92 EIEPNLKKGATLA  104 (182)
T ss_dssp             HTGGGCCTTCEEE
T ss_pred             hhhhhcCCCcEEE
Confidence            8999999999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=6.5e-10  Score=89.17  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=56.4

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES  121 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~  121 (274)
                      |||||+|+||+.+|+.|+..+....+| +|+.. .+  ....+....++.|++++||+|++|+|.. ...     +.++.
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~-~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~   74 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYIL-SRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANH   74 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEE-CSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEE-eCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhh
Confidence            799999999999999998744422355 44443 33  3344545568899999999999999953 333     34555


Q ss_pred             CC-CCcEEEEcCCCchh
Q psy3240         122 MK-PGAILINTSRGQLV  137 (274)
Q Consensus       122 mk-~gailINv~RG~iV  137 (274)
                      ++ ++.++|+++.+...
T Consensus        75 l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          75 LNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             TCCSSCCEEECCSSSCG
T ss_pred             hcccceeeeecccchhh
Confidence            64 79999999876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.82  E-value=7.9e-09  Score=84.02  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC---------------c-ccCHHHHhcccCEEEEcC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA---------------E-HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~---------------~-~~sl~ell~~aDvVil~l  104 (274)
                      .||++|||.|.||..+|..|...|.++.+|+++..+.+ ....+.               . ..++.|.++.||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            48999999999999999999999998888876543322 222211               1 137899999999999999


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD  148 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~  148 (274)
                      |. ..++.++ ++..+.++++++++-.. |.......+.+.+++
T Consensus        81 ~~-~~~~~~~-~~i~~~l~~~~~iv~~~-g~~~~~~~~~~~~~~  121 (184)
T d1bg6a2          81 PA-IHHASIA-ANIASYISEGQLIILNP-GATGGALEFRKILRE  121 (184)
T ss_dssp             CG-GGHHHHH-HHHGGGCCTTCEEEESS-CCSSHHHHHHHHHHH
T ss_pred             ch-hHHHHHH-HHhhhccCCCCEEEEeC-CCCccHHHHHHHHHH
Confidence            94 4555555 45677889999888543 333334444444443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.72  E-value=1.6e-08  Score=86.12  Aligned_cols=108  Identities=13%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHhccH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~li~~  116 (274)
                      +|+|+||+|-|+|++|+.+|+.|...|+++++++....... ....+....+.++++. .||+++-|.     +.+.|++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~   98 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT   98 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence            69999999999999999999999999998777765444333 5567777788888876 699988654     3366888


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhee
Q psy3240         117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVIS  153 (274)
Q Consensus       117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~  153 (274)
                      +..++++- .+++..+-+.+.+++ .-+.|+++||.+
T Consensus        99 ~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~~  133 (201)
T d1c1da1          99 EVARTLDC-SVVAGAANNVIADEA-ASDILHARGILY  133 (201)
T ss_dssp             HHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCEE
T ss_pred             HHHhhhhh-heeeccCCCCcchhh-HHHHhcccceEE
Confidence            88888873 466777777766554 345677777754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.70  E-value=1.5e-08  Score=82.98  Aligned_cols=99  Identities=23%  Similarity=0.380  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++++++|.|||.|.||+.+++.|...|++.+...+|+....   +...+....   ++.+.+.++|+|+.|++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            68999999999999999999999999997676677764332   445565443   677788899999999874   334


Q ss_pred             hccHHHHhc------CCCCcEEEEcCCCchhcHH
Q psy3240         113 LINRARLES------MKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       113 li~~~~l~~------mk~gailINv~RG~iVde~  140 (274)
                      +++++.++.      -++..++||.|.-.-||.+
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~  131 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPRDVEEG  131 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTT
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCCCcChh
Confidence            566665532      2345699999876656543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.66  E-value=3.6e-08  Score=84.88  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             CCCCC-CEEEEEccChHHHHHHHHHcc------CCCeEEEEeCCCCChh--HhhcCCc-----ccCHHHHhcccCEEEEc
Q psy3240          38 PALQN-STVGIVGCGRIGLSVLEKLIP------YKVSKFLYTSRSKKPE--ADKRGAE-----HTNIDDLCKQSDFIIIT  103 (274)
Q Consensus        38 ~~L~g-ktVGIIGlG~IG~~iA~~L~~------~G~~vv~~~~r~~~~~--a~~~g~~-----~~sl~ell~~aDvVil~  103 (274)
                      ..++| |+|+|||+|.-|++=|.+|+.      .|..+++.-+...+..  +.+.|..     ..+.+|++++||+|.+.
T Consensus        39 ~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiL  118 (226)
T d1qmga2          39 DAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLL  118 (226)
T ss_dssp             HHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEEC
T ss_pred             HHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEe
Confidence            35788 899999999999999999998      5566666655554433  7777876     34789999999999999


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      +|.. ....+. ++..+.||+|+.+.=. .|
T Consensus       119 lPDe-~Q~~vy-~~I~p~Lk~G~~L~Fa-HG  146 (226)
T d1qmga2         119 ISDS-AQADNY-EKVFSHMKPNSILGLS-HG  146 (226)
T ss_dssp             SCHH-HHHHHH-HHHHHHSCTTCEEEES-SS
T ss_pred             cchH-HHHHHH-HHHHHhcCCCceeeec-ch
Confidence            9953 344466 4788999999987643 44

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.59  E-value=2.7e-08  Score=79.97  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=61.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ++|||||+|+||+++++.|...| .++.+++++..+.+  ..+.++...+-.+.+++||+|+++++. ....     +.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavkP-~~~~-----~v~   74 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVKP-QDME-----AAC   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSCH-HHHH-----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecCH-HHHH-----HhH
Confidence            58999999999999999887666 55555544333323  344577665434456789999999972 1222     334


Q ss_pred             hcCC-CCcEEEEcCCCchhcHHHHHh
Q psy3240         120 ESMK-PGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       120 ~~mk-~gailINv~RG~iVde~aL~~  144 (274)
                      +.++ .+.++|.+.-|-.  .+.+.+
T Consensus        75 ~~l~~~~~~viS~~ag~~--~~~l~~   98 (152)
T d1yqga2          75 KNIRTNGALVLSVAAGLS--VGTLSR   98 (152)
T ss_dssp             TTCCCTTCEEEECCTTCC--HHHHHH
T ss_pred             HHHhhcccEEeecccCCC--HHHHHH
Confidence            4444 5789999887754  445555

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.7e-07  Score=78.53  Aligned_cols=100  Identities=9%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC------------------Ccc-cCHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG------------------AEH-TNID   91 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g------------------~~~-~sl~   91 (274)
                      ++|+|||.|.||+.+|..+...|+++++||....... +           .+.+                  +.. .++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            7999999999999999999999998888876543211 0           0011                  112 2778


Q ss_pred             HHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          92 DLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        92 ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      +.++.||+|+=++|-.-+.+.-+-++.-+.++++++|...+++-  ....+.+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~  135 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIAN  135 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHT
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhh
Confidence            88999999999999887877766666667788998886554433  3344544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.44  E-value=1.4e-07  Score=72.16  Aligned_cols=90  Identities=13%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc--C-HHHHhcccCEEEEcCCCCcccH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT--N-IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~--s-l~ell~~aDvVil~lPlt~~T~  111 (274)
                      -+|+||+|+|||.|.+|.+-|+.|.++|++++++++......   ....++...  . -++.+..+++|+.+...     
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-----   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-----   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence            489999999999999999999999999998888876655433   122233321  1 23456778998887643     


Q ss_pred             HhccHHHHhcCCCCcEEEEcC
Q psy3240         112 HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~  132 (274)
                      .-++.+....+|+..++||++
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHHcCCEEEeC
Confidence            235666667778888999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1e-06  Score=69.95  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--------ccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--------HTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--------~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      +||+|||.|.||..+|..|...|.++.++++...... ....+..        ..+..+.+..+|+|+++++. .+++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            5899999999999999999999997777765554332 1111111        12556777899999999995 456555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q psy3240         114 INRARLESMKPGAILINTSRG  134 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG  134 (274)
                      + +...+.+++++.++.+.-|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            4 3445667788888887655

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.23  E-value=4.9e-07  Score=75.15  Aligned_cols=100  Identities=12%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----------hcCC-------------cccCHHHHhccc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----------KRGA-------------EHTNIDDLCKQS   97 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----------~~g~-------------~~~sl~ell~~a   97 (274)
                      ++|+|||.|.||+.+|..+...|+++++||......+ +.           ..+.             ...+..+.+..|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            5799999999999999999999998888886543211 10           0110             111222347889


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      |+|+-++|.+-+.+.-+-++.-+.++++++|...+++-.+  ..|.+
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~  129 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAK  129 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGG
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHH
Confidence            9999999998888876667777888999998766555433  44555

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.8e-07  Score=65.73  Aligned_cols=65  Identities=23%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--C-HHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--N-IDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--s-l~ell~~aDvVil~  103 (274)
                      +++||+|+|+|+|..|+++|+.|...|++++++|.+.....  ....+....  . -++.+.++|+|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            68999999999999999999999999999999988665433  112222221  2 25567888998884

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.20  E-value=1.4e-06  Score=75.26  Aligned_cols=114  Identities=13%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHhc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~li  114 (274)
                      .+|.|+||.|-|+|++|+.+|+.|...|+++++.+.......  ....+....+.++++. .|||++-|.-     .+.|
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~-----~~~I  109 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCAL-----GAVL  109 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSC-----SCCB
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEeccccc-----cccc
Confidence            579999999999999999999999999997776655433222  3345777777777764 6999998764     3567


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240         115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      +++..++++- .+++-.+-..+.+.++ .+.|.++||.++ |...
T Consensus       110 ~~~~~~~l~a-k~Ive~ANn~~t~~ea-~~~L~~rGI~~iPD~la  152 (230)
T d1leha1         110 NDFTIPQLKA-KVIAGSADNQLKDPRH-GKYLHELGIVYAPDYVI  152 (230)
T ss_dssp             STTHHHHCCC-SEECCSCSCCBSSHHH-HHHHHHHTCEECCHHHH
T ss_pred             ChHHhhccCc-cEEEecccCCCCCchH-HHHHHhhCcEEEeehhh
Confidence            7777777763 4777777788877665 456888888655 4444

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=2.3e-06  Score=71.53  Aligned_cols=102  Identities=14%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh--------------------cC-Cc-ccCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK--------------------RG-AE-HTNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~--------------------~g-~~-~~sl~ell~~aDvV  100 (274)
                      ++|+|||+|.+|..+|..|...|.++++||.....-....                    .+ .. ..+++++++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            5799999999999999999999998888886432211100                    11 11 23788889999999


Q ss_pred             EEcCCCCc------cc---HHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         101 IITSALTP------DT---HHLIN--RARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       101 il~lPlt~------~T---~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++|+|..-      ..   ..+++  ...+...+++.++|-.|+..+=-.+.++.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~  135 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVI  135 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHH
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhh
Confidence            99999521      11   12222  13556677899999999977655555444

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.13  E-value=3e-06  Score=69.68  Aligned_cols=91  Identities=12%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHh---hc------CC-------c-ccCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD---KR------GA-------E-HTNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~---~~------g~-------~-~~sl~ell~~aDvVil~lP  105 (274)
                      ++|+|||.|.+|.++|..|...|.++.+|.++.......   ..      +.       . ..+++++++.+|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            589999999999999999998898766664432221111   00      00       1 1378899999999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      . ...+.++. +..+.+++. .+|.++.|..
T Consensus        81 s-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 T-DGVLPVMS-RILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             G-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred             h-hhhHHHHH-hhccccccc-eecccccCcc
Confidence            4 45666654 455556655 5555666653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.6e-05  Score=65.55  Aligned_cols=83  Identities=18%  Similarity=0.380  Sum_probs=64.8

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.+++||+|.|||-+. +|+.+|..|...|+.+..++..+.            ++.+..+++|+|+.+++.    .+++.
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------------~l~~~~~~aDivi~a~G~----~~~i~   97 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------------HLDEEVNKGDILVVATGQ----PEMVK   97 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHTTCSEEEECCCC----TTCBC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------------cHHHHHhhccchhhcccc----ccccc
Confidence            5689999999999975 899999999999997777665443            466788899999999874    24465


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhc
Q psy3240         116 RARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVd  138 (274)
                      .+   ..|+|+++||++-..+.|
T Consensus        98 ~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          98 GE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             GG---GSCTTCEEEECCCBC---
T ss_pred             cc---cccCCCeEeccCcccccc
Confidence            54   469999999998654433

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.03  E-value=5.9e-06  Score=71.82  Aligned_cols=74  Identities=9%  Similarity=0.046  Sum_probs=62.0

Q ss_pred             CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceee
Q psy3240          89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFT  168 (274)
Q Consensus        89 sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~  168 (274)
                      +..|++++||+|++++|..+.+..++ ++..+.+++|++++|+|+........+.+.++.                    
T Consensus       134 d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~--------------------  192 (242)
T d2b0ja2         134 DDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGR--------------------  192 (242)
T ss_dssp             CHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTC--------------------
T ss_pred             CHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhccc--------------------
Confidence            78899999999999999877788888 578899999999999999988888888885543                    


Q ss_pred             cCCCcccCccceeeeeecccCCc
Q psy3240         169 LGDSFHKGHVSAFIFIHMIMGDT  191 (274)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~i~~~~  191 (274)
                              ++..|++.||.++.+
T Consensus       193 --------kgi~vi~~hp~a~pe  207 (242)
T d2b0ja2         193 --------EDLNITSYHPGCVPE  207 (242)
T ss_dssp             --------TTSEEEECBCSSCTT
T ss_pred             --------CCCEEECCCccCcCc
Confidence                    445577888888775

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.9e-06  Score=68.48  Aligned_cols=79  Identities=16%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      +.++.||++.|||-+. +|+.+|..|...|+++...+.++.            ++.+.+++||+|+.++..    .+++.
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~------------~l~~~~~~ADivI~a~G~----p~~i~   95 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK------------NLRHHVENADLLIVAVGK----PGFIP   95 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS------------CHHHHHHHCSEEEECSCC----TTCBC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccc------------hhHHHHhhhhHhhhhccC----ccccc
Confidence            5689999999999987 999999999999997766654432            567888999999999863    25566


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q psy3240         116 RARLESMKPGAILINTSRG  134 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG  134 (274)
                      .+   .+|+|+++||++--
T Consensus        96 ~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          96 GD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             TT---TSCTTCEEEECCCE
T ss_pred             cc---ccCCCcEEEecCce
Confidence            55   45899999999843

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.02  E-value=8.8e-05  Score=60.80  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-------------------cc-cCHHHHhcccCEEEE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-------------------EH-TNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-------------------~~-~sl~ell~~aDvVil  102 (274)
                      ++|+|||+|.+|..+|..+. .|.++++||.....-.....|.                   .. .+..+...++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            58999999999999998775 6998888886543221111111                   11 255566788999999


Q ss_pred             cCCCCcccHH-hcc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         103 TSALTPDTHH-LIN-------RARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       103 ~lPlt~~T~~-li~-------~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      ++|....... ..+       .+.+...+++.++|--++-.+=..+.+..
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~  129 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ  129 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee
Confidence            9996543221 111       12233446788888888877666666666

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=5.9e-06  Score=68.29  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=65.8

Q ss_pred             CCCCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-------------ccCHHHHhcccCEEE
Q psy3240          36 CGPALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-------------HTNIDDLCKQSDFII  101 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-------------~~sl~ell~~aDvVi  101 (274)
                      .|.+|+||++.|||-+++ |+++|..|...|+.+...+..+...........             ...+.+...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            467999999999999865 999999999999976665543221100000000             012677788999999


Q ss_pred             EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                      .++|...-   .+..+   ..|+|+++||+|-....+
T Consensus       103 savG~p~~---~i~~d---~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1         103 TGVPSENY---KFPTE---YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             ECCCCTTC---CBCTT---TSCTTEEEEECSSSCCBC
T ss_pred             EccCCCcc---ccChh---hcccCceEeecccccccc
Confidence            99985321   13333   358999999999765444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=4.9e-06  Score=64.36  Aligned_cols=69  Identities=13%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHH-hcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~el-l~~aDvVil~lPlt~~T~  111 (274)
                      |++.|+|+|.+|+.+|+.|...|.++++++.+..... ....+...        ..++++ +.+||.+++++|....+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            6789999999999999999999998888887654433 33334321        134454 789999999998655443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.87  E-value=2e-06  Score=71.66  Aligned_cols=94  Identities=9%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H--hhc------CC------cc-cCHHHHhcccCEEEEc
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A--DKR------GA------EH-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a--~~~------g~------~~-~sl~ell~~aDvVil~  103 (274)
                      +.-++|+|||.|.+|.++|..|...|.++.+|.++..... .  ...      ++      .. .+++++++.+|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            3446899999999999999999999987777664322111 0  010      11      12 2789999999999999


Q ss_pred             CCCCcccHHhccHH---H-HhcCCCCcEEEEcCCC
Q psy3240         104 SALTPDTHHLINRA---R-LESMKPGAILINTSRG  134 (274)
Q Consensus       104 lPlt~~T~~li~~~---~-l~~mk~gailINv~RG  134 (274)
                      +|. ...+.++..-   . ....+++..+|+++-|
T Consensus        85 vPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             CcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            994 4455554321   0 1123567788888766

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2.9e-05  Score=63.58  Aligned_cols=115  Identities=11%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-Hh----h----cCCc-----c---cCHHHHhcccC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-AD----K----RGAE-----H---TNIDDLCKQSD   98 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~----~----~g~~-----~---~sl~ell~~aD   98 (274)
                      |.++++|+|.|+|.|..|++++..|...|++.+...+|... .. ..    .    ....     .   .++.+.+..+|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            46899999999999999999999999999976655555443 22 11    1    1111     1   13456678999


Q ss_pred             EEEEcCCCCccc---HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240          99 FIIITSALTPDT---HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus        99 vVil~lPlt~~T---~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      +|+.++|.....   ..++.  .++.++++.+++|+.-...  +..+.+..+.+|+..+|
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p~--~T~ll~~a~~~g~~~i~  148 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNPH--MTKLLQQAQQAGCKTID  148 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSSS--SCHHHHHHHTTTCEEEC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhhcCcc--ccHHHHHHHHCcCeEec
Confidence            999999975331   11111  2456789999999975432  24566666777877766

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=7.5e-05  Score=64.20  Aligned_cols=114  Identities=14%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCC--------hh----H--------hhcCCcccCHHHHhc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKK--------PE----A--------DKRGAEHTNIDDLCK   95 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~--------~~----a--------~~~g~~~~sl~ell~   95 (274)
                      |.+|+|++|.|=|+|++|+.+|+.|. ..|++++..++....        ..    .        ...+.+..+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            46799999999999999999999994 689977766543311        00    0        011223346777776


Q ss_pred             -ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          96 -QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        96 -~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                       .||+++-|.     ..+.|+.+..++++- .+++-.+-+.+. .++ .+.|.++||.++ |.+.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~~~PD~~a  162 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGILVVPDILA  162 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEECHHHH
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeEEechHHh
Confidence             799998764     346789999999985 477777777764 444 466888887654 4444

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.75  E-value=3.6e-05  Score=66.50  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------hh----------------HhhcCCccc-CHH
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------PE----------------ADKRGAEHT-NID   91 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------~~----------------a~~~g~~~~-sl~   91 (274)
                      .+|+|+||.|-|+|++|+.+|+.|...|++++..++....         ..                ....+.... +.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            4799999999999999999999999999988777654321         00                011122222 345


Q ss_pred             HHhc-ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          92 DLCK-QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        92 ell~-~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      +++. .||+++-|...     +.|+++..++++- .+++-.+-+.+ ..++ .+.|.++|+.++
T Consensus       107 ~i~~~~~DIliPcA~~-----~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~~~  162 (242)
T d1v9la1         107 AIFKLDVDIFVPAAIE-----NVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVVVV  162 (242)
T ss_dssp             GGGGCCCSEEEECSCS-----SCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCEEE
T ss_pred             hhccccccEEeecchh-----ccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeEEe
Confidence            5553 69999988653     4577777777763 57777777775 5555 377888887654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.74  E-value=2.3e-05  Score=68.36  Aligned_cols=117  Identities=17%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC---------Chh-------------------HhhcCCccc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK---------KPE-------------------ADKRGAEHT   88 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~---------~~~-------------------a~~~g~~~~   88 (274)
                      +.+|+|+||.|=|+|++|+.+|+.|...|++++.+.+...         ...                   ....+.+..
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            3579999999999999999999999999998776544321         000                   011122222


Q ss_pred             CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCCC-Cc-EEEEcCCCchhcHHHHHhhhhhhhhee-ehhhcc
Q psy3240          89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMKP-GA-ILINTSRGQLVDQEALIDFIADIRVIS-ISMVTN  159 (274)
Q Consensus        89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk~-ga-ilINv~RG~iVde~aL~~~L~~~~i~~-~D~~~~  159 (274)
                      +.++++ ..||+++-|     ++.+.|+.+..++++. ++ +++-.+-+.+..+ +.-..|+++||.+ =|...|
T Consensus       111 ~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~vvPD~laN  179 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMVVAPSKAVN  179 (255)
T ss_dssp             ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCEEECHHHHT
T ss_pred             chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCEEehHhhhc
Confidence            333433 469998755     4556678777777753 33 7777777775554 4333456667644 454443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.70  E-value=3.1e-05  Score=62.67  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=55.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARL  119 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l  119 (274)
                      ..+|||||+|.||+..++.++.. +++.+.+.++..+.. ...+.. ..+.+++..+.|+|++++|......     -..
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~-----~a~   76 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQA   76 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-cccccccchhhhhhccccceEEEeCCCcccHH-----HHH
Confidence            35799999999999999999875 566665555544322 122222 2367778889999999999754322     223


Q ss_pred             hcCCCCcEEEEc
Q psy3240         120 ESMKPGAILINT  131 (274)
Q Consensus       120 ~~mk~gailINv  131 (274)
                      +.++.|.-+|.+
T Consensus        77 ~aL~aG~~vv~~   88 (170)
T d1f06a1          77 PKFAQFACTVDT   88 (170)
T ss_dssp             HHHTTTSEEECC
T ss_pred             HHHHCCCcEEEe
Confidence            335667666643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=6.5e-05  Score=59.96  Aligned_cols=105  Identities=16%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCCh-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKP-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      .+|||||+|.+|+. .+..++.. +++++++.++.... .  ....++... ++++++++.|+|++++|....  .-+-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h--~~~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH--FDVVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH--HHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhc--ccccc
Confidence            47999999999986 46666654 66666555554433 2  445666654 789999999999999996322  22223


Q ss_pred             HHHhcCCCCcEEEEc-CCCchhcHHHHHhhhhhhhh
Q psy3240         117 ARLESMKPGAILINT-SRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       117 ~~l~~mk~gailINv-~RG~iVde~aL~~~L~~~~i  151 (274)
                      ..++.=|  .+++.- ---.+-+.+.|.+..+..|+
T Consensus        80 ~al~~gk--~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          80 TLLNAGV--HVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             HHHHTTC--EEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccc--eeeccccccCCHHHHHHHHHHHHHcCC
Confidence            4444322  466653 11233466666665554443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=2.2e-05  Score=63.23  Aligned_cols=90  Identities=26%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------C-HHHHhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------N-IDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------s-l~ell~~aDvVil~lPlt~~T~  111 (274)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+..+       + .+......|+++.++...... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            689999999999999999999999998888887666665 777787421       1 223345689999887643221 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                       .+ ...++.++++..++.++-
T Consensus       106 -~~-~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         106 -DF-NIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -CT-TTGGGGEEEEEEEEECCC
T ss_pred             -hH-HHHHHHhhccceEEEecc
Confidence             11 245677889999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=58.96  Aligned_cols=89  Identities=17%  Similarity=0.239  Sum_probs=64.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHh--------cccCEEEEcC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLC--------KQSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell--------~~aDvVil~l  104 (274)
                      .|.+|.|+|.|.||...++.++.+|++ +++.+....+.+ +++.|+...      +..+..        ..+|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            477999999999999999999999995 555555544444 777887532      333332        2479999988


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ... .   .+ +..++.++++..++.++-.
T Consensus       106 G~~-~---~~-~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         106 GAE-A---SI-QAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCH-H---HH-HHHHHHSCTTCEEEECSCC
T ss_pred             CCc-h---hH-HHHHHHhcCCCEEEEEecC
Confidence            742 2   12 3567788999999998853

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.5e-05  Score=61.17  Aligned_cols=89  Identities=22%  Similarity=0.237  Sum_probs=67.6

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----CH---HHHhcccCEEEEcCCCCcccH
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----NI---DDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----sl---~ell~~aDvVil~lPlt~~T~  111 (274)
                      -.|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+..+    +.   .+..+..|+++-++...... 
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~-  107 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL-  107 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCH-
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhH-
Confidence            3589999999999999999999999998888887766655 677787532    22   22345689999998753322 


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                          ...++.++++..++.++.
T Consensus       108 ----~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         108 ----DDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             ----HHHHTTEEEEEEEEECCC
T ss_pred             ----HHHHHHHhcCCEEEEecc
Confidence                345678899999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=0.0001  Score=56.78  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcCCcc-----cC---HHHH-hcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRGAEH-----TN---IDDL-CKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g~~~-----~s---l~el-l~~aDvVil~lPlt~~T~  111 (274)
                      ++|.|+|+|.+|+.+|+.|...|.++++.+....... . ...+...     .+   ++++ ++++|.++.+++..+  .
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence            5899999999999999999999998888887654433 2 2335432     12   3333 678999999887643  3


Q ss_pred             HhccHHHHhcCCCCcEEE
Q psy3240         112 HLINRARLESMKPGAILI  129 (274)
Q Consensus       112 ~li~~~~l~~mk~gailI  129 (274)
                      +++-....+.+.+..++.
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            444445556677666654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.60  E-value=3.6e-05  Score=60.73  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=65.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc--------c-cCHHHHhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE--------H-TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~--------~-~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ++|+|.|||.|.||+.+|+.|...|.+++++++...+..  +...+..        . ..+++.+..+|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            479999999999999999999999998777766554433  2222211        1 1456678889999998885432


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~  152 (274)
                        ..+-.   ..++.+..+++++.-.. +...+.+..+..+..
T Consensus        81 --~~~~~---~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~  117 (182)
T d1e5qa1          81 --ATVIK---SAIRQKKHVVTTSYVSP-AMMELDQAAKDAGIT  117 (182)
T ss_dssp             --HHHHH---HHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCE
T ss_pred             --hHHHH---HHHhhccceeecccCcH-HHHHHHHHhccccce
Confidence              11211   22345677788764321 233444444443333

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.58  E-value=6.6e-05  Score=66.72  Aligned_cols=110  Identities=15%  Similarity=0.312  Sum_probs=75.0

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H---h-hcCC------cccCHHHHhc-c
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A---D-KRGA------EHTNIDDLCK-Q   96 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a---~-~~g~------~~~sl~ell~-~   96 (274)
                      +.+|.|+||.|=|+|++|+.+|+.|...|++++.+++....        .. .   . ..+.      ...+.++++. .
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            35899999999999999999999999999988776643321        01 0   0 0010      1123344544 7


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI  154 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~  154 (274)
                      ||+++-|.-     .+.|+.+..+.++- .+++-.+-+.+. .+| .+.|.++||.++
T Consensus       111 ~DIliPaA~-----~~~I~~~~a~~l~a-k~I~EgAN~P~t-~eA-~~~L~~~gI~vi  160 (293)
T d1hwxa1         111 CDILIPAAS-----EKQLTKSNAPRVKA-KIIAEGANGPTT-PQA-DKIFLERNIMVI  160 (293)
T ss_dssp             CSEEEECSS-----SSCBCTTTGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEE
T ss_pred             ccEEeeccc-----cccccHHHHHHHhh-CEEeccCCCCCC-cch-HHHHHHCCCEEe
Confidence            999988753     36677777788864 477788888854 444 366888888655

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=4.4e-05  Score=61.75  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh---cC-CcccCHHHH-hcccCEEEEcCCCCc
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK---RG-AEHTNIDDL-CKQSDFIIITSALTP  108 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~---~g-~~~~sl~el-l~~aDvVil~lPlt~  108 (274)
                      +.++.||+|.|+|.|-.+++++..|...|++ +...+|+....   ...   .+ +...++++. ...+|+|+.++|..-
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI   91 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceE-EEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCc
Confidence            4578999999999999999999999999996 44455554332   111   11 122344443 467999999999853


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240         109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i  151 (274)
                      ...  .....++.++++++++|+--...  +..+++..+++|+
T Consensus        92 ~~~--~~~~~~~~~~~~~~v~D~vY~P~--~T~ll~~A~~~G~  130 (170)
T d1nyta1          92 SGD--IPAIPSSLIHPGIYCYDMFYQKG--KTPFLAWCEQRGS  130 (170)
T ss_dssp             GTC--CCCCCGGGCCTTCEEEESCCCSS--CCHHHHHHHHTTC
T ss_pred             ccC--CCCCcHHHhccCcEEEEeecCCC--CCHHHHHHHHcCC
Confidence            321  11123456789999999975543  2345555555554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.50  E-value=0.0002  Score=57.00  Aligned_cols=90  Identities=21%  Similarity=0.241  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--------CHHH---Hh-----cccCEEEE
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--------NIDD---LC-----KQSDFIII  102 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--------sl~e---ll-----~~aDvVil  102 (274)
                      -.|.+|.|+|.|.||...++.++.+|+++++.+.+..+.+ +++.|+...        +..+   .+     ..+|+|+-
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            3578999999999999999999999998887776655555 666666321        2222   22     23799999


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                      ++.. +.+   + ...++.++++..++.++-.
T Consensus       105 ~~g~-~~~---~-~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         105 CSGN-EKC---I-TIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             CSCC-HHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred             cCCC-hHH---H-HHHHHHHhcCCceEEEecC
Confidence            8863 221   2 3456778999999999864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.49  E-value=0.00019  Score=57.87  Aligned_cols=88  Identities=25%  Similarity=0.367  Sum_probs=58.0

Q ss_pred             CEEEEEccChHHHH-HHHHHccCCC-eEEEEeCCCCC-h--h-HhhcCCccc--CHHHHh-----cccCEEEEcCCCCcc
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPYKV-SKFLYTSRSKK-P--E-ADKRGAEHT--NIDDLC-----KQSDFIIITSALTPD  109 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~G~-~vv~~~~r~~~-~--~-a~~~g~~~~--sl~ell-----~~aDvVil~lPlt~~  109 (274)
                      .+|||||.|.||+. +.+.++.+.. +.+.+.++... .  . +...++...  ++++++     .+.|+|+.++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 5677776543 44455444432 2  1 556676543  355543     468999999985333


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         110 THHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ..   .+..+...+.|..+||-+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            32   2334555799999999986

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.49  E-value=0.00029  Score=60.60  Aligned_cols=112  Identities=16%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCCh---------h----Hhh-------cCCcccCHHHHh-cc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKP---------E----ADK-------RGAEHTNIDDLC-KQ   96 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~---------~----a~~-------~g~~~~sl~ell-~~   96 (274)
                      .|+|+||.|-|+|++|..+|+.|. ..|++++...+.....         .    ...       .+.+..+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            599999999999999999999885 6899777666544210         0    000       123445677766 47


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT  158 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~  158 (274)
                      |||++-|.-.     +.|+.+..++++- .+++-.+-+.+. .++ .+.|.++||.++ |...
T Consensus       109 ~DIl~PcA~~-----~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~~iPD~~a  163 (239)
T d1gtma1         109 VDVLAPAAIE-----EVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGILQIPDFLC  163 (239)
T ss_dssp             CSEEEECSCS-----CCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEECHHHH
T ss_pred             ccEEeecccc-----ccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCEEecchhh
Confidence            9999987653     5677777777764 577777778764 444 467888888665 4433

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=8.5e-05  Score=60.18  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc---------ccCEEEE
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK---------QSDFIII  102 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~---------~aDvVil  102 (274)
                      -.|.+|.|+|.|.||...++.++.+|++ +++.+.+..+.+ +++.|+..+      +..+..+         ..|+|+-
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            3689999999999999999999999984 566665554444 666776321      2222211         2677777


Q ss_pred             cCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         103 TSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       103 ~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ++......     +..++.++++..++-++
T Consensus       107 ~vG~~~~~-----~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         107 ATGDSRAL-----LEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             CSSCTTHH-----HHHHHHEEEEEEEEECC
T ss_pred             cCCchhHH-----HHHHHHhcCCCEEEEEe
Confidence            76532211     23455567777666665

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=0.00015  Score=58.58  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcccCHHHHhcccCEEEEcCCCC--cccHH---
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHTNIDDLCKQSDFIIITSALT--PDTHH---  112 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~sl~ell~~aDvVil~lPlt--~~T~~---  112 (274)
                      ++++|.|+|.|..|++++..|+..|++.+...+|+.+..   ....+....+. ....++|+|+.++|..  +....   
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpiGm~~~~~~~~l   94 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSIGMKGGKEEMDL   94 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSSTTCTTSTTTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheeccccCCccccccccc
Confidence            678999999999999999999999986565566654332   23334433211 1135799999999963  11111   


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .++...+   +++++++|+--...  +..|++..++.|+..+|
T Consensus        95 ~~~~~~~---~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~i~  132 (167)
T d1npya1          95 AFPKAFI---DNASVAFDVVAMPV--ETPFIRYAQARGKQTIS  132 (167)
T ss_dssp             SSCHHHH---HHCSEEEECCCSSS--SCHHHHHHHHTTCEEEC
T ss_pred             cccHhhc---CCcceEEEEeeccC--CCHHHHHHHHCCCeEEE
Confidence            1344343   56789999865543  23466667777777666

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.30  E-value=0.00044  Score=56.51  Aligned_cols=93  Identities=15%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh----cCCc-----c---cCHHHHhcccCEE
Q psy3240          36 CGPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK----RGAE-----H---TNIDDLCKQSDFI  100 (274)
Q Consensus        36 ~g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~----~g~~-----~---~sl~ell~~aDvV  100 (274)
                      .|.+|+||++.|.| -|.||+.+|+.|...|+++++.+++..+..  ...    ....     .   .++++++.+.|+|
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            36799999999999 699999999999999998777776544322  111    1111     1   1455667778888


Q ss_pred             EEcCCCCcccHHhccHHHHhcCCCCcEEEEc
Q psy3240         101 IITSALTPDTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus       101 il~lPlt~~T~~li~~~~l~~mk~gailINv  131 (274)
                      +.+.+...   ..++.+.++.+..--++.+.
T Consensus        97 in~Ag~g~---~~~~~e~~~~~~~~nv~~~~  124 (191)
T d1luaa1          97 FTAGAIGL---ELLPQAAWQNESSIEIVADY  124 (191)
T ss_dssp             EECCCTTC---CCBCHHHHHTCTTCCEEEEC
T ss_pred             eecCcccc---ccCCHHHHHhhhcceeehhH
Confidence            77655321   22455555555544444444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.28  E-value=0.00012  Score=59.43  Aligned_cols=87  Identities=24%  Similarity=0.290  Sum_probs=59.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc------ccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK------QSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~------~aDvVil~lPl  106 (274)
                      .|.+|.|+|.|.||...++.++.+|++ +++.+.+..+.+ +++.|+..+      ++.+.+.      ..|+|+-++..
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            588999999999999999999999985 455554443444 677776421      3333221      27899988874


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ...    + ...+..++|+..++-++
T Consensus       107 ~~~----~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SET----L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTH----H-HHHHHHEEEEEEEEECC
T ss_pred             HHH----H-HHHHHHHhcCCEEEEEe
Confidence            322    2 34566678888888887

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.23  E-value=0.00017  Score=58.07  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc------CHHHHhcc-----cCEEEEcCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT------NIDDLCKQ-----SDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~------sl~ell~~-----aDvVil~lPl  106 (274)
                      -.|.+|.|+|.|.||...++.++.+|+++++..++.+ +.+ +++.|+...      ++.+.+++     .|+|+-++..
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~  106 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  106 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc
Confidence            4689999999999999999999999997766544433 334 667776421      34443322     7999998864


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      . .+   + +..++.++++..++.++-
T Consensus       107 ~-~~---~-~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         107 P-EI---L-KQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             H-HH---H-HHHHHTEEEEEEEEECCC
T ss_pred             H-HH---H-HHHHhcccCceEEEEEee
Confidence            2 21   1 356777899999988874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=0.00011  Score=59.66  Aligned_cols=114  Identities=14%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc----CC------cccCHHHHhcccCEEEEcC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR----GA------EHTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~----g~------~~~sl~ell~~aDvVil~l  104 (274)
                      .+++||+|.|+|.|..+++++..|...| ++.++ +|+... +  ....    ..      ...+++..+..+|+|+.+.
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~-nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeee-hhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence            4699999999999999999999998777 44444 454322 2  1111    11      1235666678899999999


Q ss_pred             CCCcccH-HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         105 ALTPDTH-HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       105 Plt~~T~-~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      |...... ..-..-.++.++++.+++|+.-...  +..+.+..++.|+..+|
T Consensus        92 p~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~--~T~l~~~a~~~G~~~i~  141 (177)
T d1nvta1          92 PIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPL--ETVLLKEAKKVNAKTIN  141 (177)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSS--SCHHHHHHHTTTCEEEC
T ss_pred             cccccccccccchhhhhccCcccceeeecCCcH--hHHHHHHHHHCCCcccC
Confidence            9743211 1000012445678999999875432  24566666677776665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.00027  Score=56.08  Aligned_cols=87  Identities=16%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh----cccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC----KQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell----~~aDvVil~lPlt~~  109 (274)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+.+..+.+ +++.|+...      +..+.+    ...|.++.+.... .
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN-S  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCH-H
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccc-h
Confidence            588999999999999999999999998777776554444 677776421      232222    2345556655432 1


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         110 THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~  132 (274)
                         .+ ...++.++++..++.++
T Consensus       106 ---~~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 ---AF-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ---HH-HHHHTTEEEEEEEEECC
T ss_pred             ---HH-HHHHHHhcCCcEEEEEE
Confidence               22 34667788888888876

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.14  E-value=0.00035  Score=62.18  Aligned_cols=89  Identities=16%  Similarity=0.293  Sum_probs=64.8

Q ss_pred             CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh------HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE------ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~------a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      -++++|||.|..++.-++.+.. +..+.+.+++|.....      ....+... .+.++.++.||+|+.++|.   +..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---cccc
Confidence            4689999999999999998864 6676666666654332      12334433 3778889999999998874   4456


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCch
Q psy3240         114 INRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~RG~i  136 (274)
                      +..+   .++||+.++.+|.-.+
T Consensus       202 ~~~~---~l~~G~hv~~iGs~~p  221 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGADGP  221 (320)
T ss_dssp             BCGG---GCCTTCEEEECSCCST
T ss_pred             cchh---hcCCCCeEeecCCccc
Confidence            7654   4799999999987544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.13  E-value=0.00035  Score=56.50  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=63.2

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCc-----ccCHHHHhc--ccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAE-----HTNIDDLCK--QSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~-----~~sl~ell~--~aDvVil~lPlt~~T~  111 (274)
                      .+|||||+|.||+..++.++.. +++++++.++.....   +...+..     +.+++++++  +.|+|++++|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            3799999999999999999865 666665655544322   3444432     248999884  5799999998644332


Q ss_pred             HhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHhhhhhhhhe
Q psy3240         112 HLINRARLESMKPGA-ILINT-SRGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       112 ~li~~~~l~~mk~ga-ilINv-~RG~iVde~aL~~~L~~~~i~  152 (274)
                      ..  ...   ++.|. +++.- .--.+-+.+.|.+..++.++.
T Consensus        82 ~~--~~~---l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 WA--IKA---AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             HH--HHH---HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             hh--hhh---hhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            22  233   33443 44432 112333555666655554443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.10  E-value=0.00028  Score=63.69  Aligned_cols=91  Identities=12%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             CCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hh----hcCCcc--c-CHHHHhcccCEEEEcCCCCccc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---AD----KRGAEH--T-NIDDLCKQSDFIIITSALTPDT  110 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~----~~g~~~--~-sl~ell~~aDvVil~lPlt~~T  110 (274)
                      -++++|||.|..++.-++.+. -++.+.+.++++.....   ..    ..|+..  + +++++++.||+|+.+++ ++.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence            478999999999999988775 47777766666654322   11    124433  3 89999999999999886 3445


Q ss_pred             HHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         111 HHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       111 ~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ..+++.+   .+|||+.+..+|.-.+
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs~~p  229 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGGDCP  229 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSCCBT
T ss_pred             Ccccchh---hcCCCCEEeecccchh
Confidence            5677654   4699999999987443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00039  Score=56.78  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPlt  107 (274)
                      ..|||.|+| .|.||+.+++.|...|.+++++.++..+.. ....+++.        .+++++++.+|+|+.++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            468999999 699999999999999998888876544322 22223321        24667899999999988643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.06  E-value=0.00045  Score=54.87  Aligned_cols=90  Identities=20%  Similarity=0.227  Sum_probs=55.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh-------cCCc--c-cCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK-------RGAE--H-TNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~-------~g~~--~-~sl~ell~~aDvVil~lPlt~  108 (274)
                      |||+|||.|.+|..+|-.|...|.  +.+.+|....+..  +.+       ....  . .+-.+.++.||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998876553  5566665443322  110       1111  1 133456799999999866422


Q ss_pred             -------ccH--------Hhcc--HHHHhcCCCCcEEEEcC
Q psy3240         109 -------DTH--------HLIN--RARLESMKPGAILINTS  132 (274)
Q Consensus       109 -------~T~--------~li~--~~~l~~mk~gailINv~  132 (274)
                             .+|        .++.  .+.+....|.+++|+++
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence                   111        2221  12345567899999997

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00061  Score=54.02  Aligned_cols=94  Identities=17%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhhc---------CCcc-cCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADKR---------GAEH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~~---------g~~~-~sl~ell~~aDvVil~l  104 (274)
                      .-.++||+|||.|.+|..+|..|...|.  +.+.+|.......  +.+.         .... ....+.++.||+|+++.
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvita   82 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA   82 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEec
Confidence            3567899999999999999999876554  5566665443322  1111         1111 23456788999999976


Q ss_pred             CCCcc---cH-Hhc--cH-------HHHhcCCCCcEEEEcC
Q psy3240         105 ALTPD---TH-HLI--NR-------ARLESMKPGAILINTS  132 (274)
Q Consensus       105 Plt~~---T~-~li--~~-------~~l~~mk~gailINv~  132 (274)
                      -....   ++ .++  |.       +.+.+..|.+++|+++
T Consensus        83 g~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          83 GANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             ccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            54321   11 111  11       2334446889999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.02  E-value=0.0011  Score=52.82  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hhh-------cCCc--c---cCHHHHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--ADK-------RGAE--H---TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~~-------~g~~--~---~sl~ell~~aDvVil~l  104 (274)
                      -+.+||+|||.|.+|+.+|..+...+. +.+++|.+.....  +..       .+..  .   .+.++.++.||+|+++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            356899999999999999988876664 5666665554332  111       1111  1   25678899999999988


Q ss_pred             CCCc--------ccHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         105 ALTP--------DTHH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~--------~T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                      ....        .++. ++  |.       +.+....|.+++++++-
T Consensus        85 g~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          85 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            4321        1332 11  11       22444568999999863

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=0.001  Score=50.72  Aligned_cols=102  Identities=13%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             CEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240          43 STVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        43 ktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~  117 (274)
                      |+|+|||.    |..|..+.+.|+..|++++.++++...    -.|... .+++|+-..-|++++++|. +.+..++.+ 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~~-   75 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAKE-   75 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeCH-HHHHHHHHH-
Confidence            78999995    688999999999999976655544321    134443 4899988889999999994 455555543 


Q ss_pred             HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      .. .+...++++..+    ...+++.+.+++.|+.++.
T Consensus        76 ~~-~~g~k~v~~~~g----~~~~~~~~~a~~~gi~vig  108 (116)
T d1y81a1          76 AV-EAGFKKLWFQPG----AESEEIRRFLEKAGVEYSF  108 (116)
T ss_dssp             HH-HTTCCEEEECTT----SCCHHHHHHHHHHTCEEEC
T ss_pred             HH-hcCCceEEeccc----hhhHHHHHHHHHcCCEEEc
Confidence            33 345557777655    2456778888888887664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.96  E-value=0.00071  Score=53.05  Aligned_cols=91  Identities=21%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c-------CCc--ccCHHHHhcccCEEEEcC--C
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R-------GAE--HTNIDDLCKQSDFIIITS--A  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~-------g~~--~~sl~ell~~aDvVil~l--P  105 (274)
                      +||+|||.|.+|..+|..|...|.  +.+.+|....+..  ...  .       ...  ..+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987664  5566665554333  111  0       111  124567789999999986  3


Q ss_pred             CCc-ccHHh-c--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         106 LTP-DTHHL-I--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~-~T~~l-i--~~-------~~l~~mk~gailINv~R  133 (274)
                      ..+ .++.- +  |.       +.+....|.+++++++-
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            233 22221 1  11       22333458999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.96  E-value=0.00056  Score=55.30  Aligned_cols=95  Identities=16%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c-----CCc---ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R-----GAE---HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~-----g~~---~~sl~ell~~aDvVil~l  104 (274)
                      .+..+||+|||.|.+|..+|-.|...|.  +.+.+|.+.....  +.+  .     +..   ...-.+.++.||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4667899999999999999999987775  4566665433222  111  1     111   113346688999999976


Q ss_pred             CCC--c-ccHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         105 ALT--P-DTHH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt--~-~T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                      -..  + +++- ++  |.       ..+....|.+++|+++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            532  1 2222 11  11       12333468899999974

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.00052  Score=55.10  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHH------HhcccCEEEEcCCCCcccH
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDD------LCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~e------ll~~aDvVil~lPlt~~T~  111 (274)
                      .|++|.|.|. |.+|+...+.++.+|+++++.+++..+.+ +++.|+..+ +..+      ....+|+|+-++.  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            6889999995 99999999999999998777776554444 677787543 2222      2245899988654  22  


Q ss_pred             HhccHHHHhcCCCCcEEEEcCC
Q psy3240         112 HLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~R  133 (274)
                        + .+.++.++++..++.+|.
T Consensus       103 --~-~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC--
T ss_pred             --H-HHHHHHHhcCCcEEEEeC
Confidence              2 456788899999998863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.92  E-value=0.00046  Score=54.37  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHH----HhcccCEEEEcCCCCcc
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDD----LCKQSDFIIITSALTPD  109 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~e----ll~~aDvVil~lPlt~~  109 (274)
                      .|.+|.|.|.|.||...++.++..|.++++.+.+..+.. +++.|+..+      ++.+    .-...|.++.+.+. +.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS-KP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC-HH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC-HH
Confidence            588999999999999999999999997666655444444 667776432      2222    33446666665543 22


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         110 THHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~R  133 (274)
                         .+ ...+..++++..++.++-
T Consensus       106 ---~~-~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         106 ---AF-QSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             ---HH-HHHHHHEEEEEEEEECCC
T ss_pred             ---HH-HHHHHHhccCCceEeccc
Confidence               22 456777899999988863

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.92  E-value=0.00079  Score=53.49  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChh--HhhcCCc--ccCHHHHhc-ccCEEEEcCCCCcccHHhcc
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPE--ADKRGAE--HTNIDDLCK-QSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g~~--~~sl~ell~-~aDvVil~lPlt~~T~~li~  115 (274)
                      .+|||||+|.+|+. .+..++.. +.+.++++++.....  +...+..  +.+.+++++ +.|+|++++|......  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            48999999999976 56677665 454454444332222  3445553  347788775 5799999999643333  22


Q ss_pred             HHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhh
Q psy3240         116 RARLESMKPGAILINTS-RGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       116 ~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i  151 (274)
                      ...++.=+  .+++.-- --.+-+.+.|.+..++.++
T Consensus        80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            34444322  3666531 2233455667775554433

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.84  E-value=0.00098  Score=52.79  Aligned_cols=91  Identities=14%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh-------cCCc--cc-CHHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK-------RGAE--HT-NIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~-------~g~~--~~-sl~ell~~aDvVil~lPl  106 (274)
                      ..+||+|||.|.+|..+|..|...|  -+++.+|....+..  +.+       .+..  .. +.+ .++.||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            4679999999999999999987655  35666665433222  110       1111  11 444 56899999998643


Q ss_pred             Ccc---cH--------Hhcc--HHHHhcCCCCcEEEEcC
Q psy3240         107 TPD---TH--------HLIN--RARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~~---T~--------~li~--~~~l~~mk~gailINv~  132 (274)
                      ...   ++        .++.  .+.+..-.|.+++|+++
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            211   11        1111  12344557889999987

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.002  Score=48.80  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=34.8

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE   79 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~   79 (274)
                      ..+.||||||-|..|+.+|..++.+|.+++++++....+.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA   48 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA   48 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch
Confidence            4567899999999999999999999999888887666554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00034  Score=50.26  Aligned_cols=36  Identities=14%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP   78 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~   78 (274)
                      |+|||+|-|..|+.++...+.+|.+++++++....+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            799999999999999999999999888888765543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.81  E-value=0.0018  Score=50.76  Aligned_cols=90  Identities=26%  Similarity=0.364  Sum_probs=53.1

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hhhc-------C--Cc--ccCHHHHhcccCEEEEcCCCC-
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--ADKR-------G--AE--HTNIDDLCKQSDFIIITSALT-  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~~~-------g--~~--~~sl~ell~~aDvVil~lPlt-  107 (274)
                      +||+|||.|.+|..+|-.|...+. +.+.+|.......  +.+.       +  ..  ..+--+.++.||+|+++.... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~   81 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR   81 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence            699999999999999988875554 5666665554332  1111       1  11  122234568899999998532 


Q ss_pred             -c-ccH-Hhc--cH-------HHHhcCCCCcEEEEcC
Q psy3240         108 -P-DTH-HLI--NR-------ARLESMKPGAILINTS  132 (274)
Q Consensus       108 -~-~T~-~li--~~-------~~l~~mk~gailINv~  132 (274)
                       + .++ .++  |.       +.+..-.|.++++.++
T Consensus        82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence             1 122 111  11       1233446788999975

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.00014  Score=59.05  Aligned_cols=93  Identities=17%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcC----CcccCHHH-HhcccCEEEEcCCCCcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRG----AEHTNIDD-LCKQSDFIIITSALTPD  109 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g----~~~~sl~e-ll~~aDvVil~lPlt~~  109 (274)
                      .++.||+|.|+|.|..+++++..|...+.+ +...+|+.+. +  +...+    ....+.++ .+.++|+|+.++|..-.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~-i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~   92 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQN-IVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS   92 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCce-eeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc
Confidence            478999999999999999999999876654 4444554432 2  22221    11223222 35789999999997532


Q ss_pred             cHH-hccHHHHhcCCCCcEEEEcCCC
Q psy3240         110 THH-LINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       110 T~~-li~~~~l~~mk~gailINv~RG  134 (274)
                      ... ....   ..++++.+++|+.=.
T Consensus        93 ~~~~~~~~---~~~~~~~~~~D~vy~  115 (171)
T d1p77a1          93 GGTASVDA---EILKLGSAFYDMQYA  115 (171)
T ss_dssp             ----CCCH---HHHHHCSCEEESCCC
T ss_pred             ccccchhh---hhhcccceeeeeecc
Confidence            111 1122   224567778887543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.79  E-value=0.0052  Score=49.39  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc-C-------HHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT-N-------IDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~-s-------l~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.||...++.++.+|+++++..+..+ +.+ +++.|+..+ +       ..+..     ..+|+++-++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            4688999999999999999999999996665555444 444 777887432 1       12222     3479999988


Q ss_pred             CCCcccHHhccHHHHhcCCCC-cEEEEcC
Q psy3240         105 ALTPDTHHLINRARLESMKPG-AILINTS  132 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~g-ailINv~  132 (274)
                      ...+.     -...++.++++ ..++-++
T Consensus       107 G~~~~-----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         107 GTAQT-----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CCHHH-----HHHHHHTBCTTTCEEEECC
T ss_pred             ccchH-----HHHHHHHhhcCCeEEEecC
Confidence            64221     23556667775 5666676

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.0007  Score=53.09  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ..+|+||+|.|||.|.+|..-|+.|..+|++++++.+.
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35799999999999999999999999999988888653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.77  E-value=0.003  Score=50.19  Aligned_cols=92  Identities=21%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCCCChh--Hhh-------cCCc--c--cCHHHHhcccCEEEEcCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRSKKPE--ADK-------RGAE--H--TNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~~~~~--a~~-------~g~~--~--~sl~ell~~aDvVil~lPlt  107 (274)
                      ..||+|||.|.+|+.+|..+...+... +.||.......  +.+       .+..  .  .+..+.++.||+|+++.-..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            468999999999999998887666544 45554443322  111       1111  1  24457789999999987643


Q ss_pred             cc---c-----HH-hc--cHH-------HHhcCCCCcEEEEcCC
Q psy3240         108 PD---T-----HH-LI--NRA-------RLESMKPGAILINTSR  133 (274)
Q Consensus       108 ~~---T-----~~-li--~~~-------~l~~mk~gailINv~R  133 (274)
                      ..   +     |- ++  |.+       .+....|++++++++-
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN  126 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  126 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            21   1     21 11  222       2334468999999874

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.001  Score=53.69  Aligned_cols=104  Identities=17%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             CEEEEEccChHHHH-HHHHHccCC--CeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhc--ccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLS-VLEKLIPYK--VSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCK--QSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~-iA~~L~~~G--~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~--~aDvVil~lPlt~~T~~  112 (274)
                      .+|||||+|.+|+. .+..++..+  ++++.+.++.... .  +...+..  +.+++|+++  +.|+|++++|...... 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            48999999999987 477777654  4555555554322 2  3345554  348999986  4789999998643322 


Q ss_pred             hccHHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhh
Q psy3240         113 LINRARLESMKPGAILINTS-RGQLVDQEALIDFIADIR  150 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~  150 (274)
                       +-...++.=|  .+++.-- --.+.+...|.+..++.+
T Consensus        83 -~~~~al~~gk--~V~~EKPl~~~~~e~~~l~~~~~~~~  118 (181)
T d1zh8a1          83 -FIEKALRKGV--HVICEKPISTDVETGKKVVELSEKSE  118 (181)
T ss_dssp             -HHHHHHHTTC--EEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred             -ccccccccch--hhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence             2234444322  4566532 223345566766555443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.0016  Score=51.93  Aligned_cols=107  Identities=19%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChhHhhcCCcccCHHHHhc--ccCEEEEcCCCCcccHHhccHH
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADKRGAEHTNIDDLCK--QSDFIIITSALTPDTHHLINRA  117 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~~~  117 (274)
                      -.+|||||+|.||+..++.++...  ..+.+++...++......+....+++|++.  +.|+|++++|....  .-+-..
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H--~~~~~~   84 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSH--EDYIRQ   84 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGH--HHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccc--cccccc
Confidence            348999999999999998887532  112222222222212222334558999886  56899999986332  223334


Q ss_pred             HHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240         118 RLESMKPGAILINTS-RGQLVDQEALIDFIADIRVI  152 (274)
Q Consensus       118 ~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i~  152 (274)
                      .++.=+  .+++.-- .-.+-+.++|.+..++.|+.
T Consensus        85 al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          85 FLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            554433  3666631 23445667777765555543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00091  Score=53.40  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|.+|.|.|. |.+|....+.++.+|+++++.+++..+.+ +++.|+..+      ++.+.+      ...|+|+-++..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~  107 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  107 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecccH
Confidence            5889999995 99999999999999998777776544334 667777432      343332      237888887641


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                        .   .+ ...++.|+++..++.++..+.
T Consensus       108 --~---~~-~~~~~~l~~~G~iv~~G~~~~  131 (174)
T d1yb5a2         108 --V---NL-SKDLSLLSHGGRVIVVGSRGT  131 (174)
T ss_dssp             --H---HH-HHHHHHEEEEEEEEECCCCSC
T ss_pred             --H---HH-HHHHhccCCCCEEEEEecCCC
Confidence              1   22 456778899999999875443

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.73  E-value=0.002  Score=52.66  Aligned_cols=64  Identities=28%  Similarity=0.382  Sum_probs=45.2

Q ss_pred             EEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---Hhhc-----------------CCcc-cCHHHHhcccCEEE
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKR-----------------GAEH-TNIDDLCKQSDFII  101 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~-----------------g~~~-~sl~ell~~aDvVi  101 (274)
                      ||||.|+|+||+.++|.+... +++++...+..+...   ....                 +... .++.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999764 467777766654433   1111                 1111 26677788899999


Q ss_pred             EcCCCC
Q psy3240         102 ITSALT  107 (274)
Q Consensus       102 l~lPlt  107 (274)
                      -|+|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999863

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.73  E-value=0.00078  Score=52.44  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CEEEEE-ccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          43 STVGIV-GCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        43 ktVGII-GlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +||+|| |.|.||+++|++|...|.++++++++..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999 8999999999999999998887765443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.72  E-value=0.0024  Score=50.12  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=52.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--cCCc-------ccCHHHHhcccCEEEEcCCCCc-
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--RGAE-------HTNIDDLCKQSDFIIITSALTP-  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~g~~-------~~sl~ell~~aDvVil~lPlt~-  108 (274)
                      +||+|||.|.+|..+|-.+...+.  +.+.+|.+.....  +.+  ....       .....+.++.||+|+++.-... 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999998876554  5667775554322  211  1111       1123456789999999854322 


Q ss_pred             --ccHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         109 --DTHH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       109 --~T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                        +++- ++  |.       +.+....|.+++|+++-
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence              1221 11  11       12444568899999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.71  E-value=0.0028  Score=49.96  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhhc-CC----------cccCHHHHhcccCEEEEcCCC--
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADKR-GA----------EHTNIDDLCKQSDFIIITSAL--  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~~-g~----------~~~sl~ell~~aDvVil~lPl--  106 (274)
                      .||+|||. |.+|+.+|..|...|.  +.+.+|....+..+.+. ..          ...+..|.++.||+|+++.-.  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            48999995 9999999999987765  35566654322222221 11          012567889999999997653  


Q ss_pred             Cc-ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 TP-DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 t~-~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                      .+ ++|. ++  |.       +.+..-.|.++++.++  .++|.-
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvD~~  123 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNST  123 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec--Cchhhh
Confidence            22 2221 11  11       1233347889999987  456643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.0013  Score=51.35  Aligned_cols=106  Identities=15%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          41 QNSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        41 ~gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      .-|+|+|||.    +..|..+++.|+..|++...+.++.....  -.|... .++.++-...|++++++|. +.+..++.
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v~   88 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP   88 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce--eeceecccchhhccCCCceEEEeccH-HHHHHHHH
Confidence            4579999997    78999999999999997777665432211  134433 4888888889999999983 44555554


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      + .. .+...++++..|    ..++++.+..++.|+.++.
T Consensus        89 ~-~~-~~g~k~i~~q~G----~~~~e~~~~a~~~Gi~vV~  122 (136)
T d1iuka_          89 E-VL-ALRPGLVWLQSG----IRHPEFEKALKEAGIPVVA  122 (136)
T ss_dssp             H-HH-HHCCSCEEECTT----CCCHHHHHHHHHTTCCEEE
T ss_pred             H-HH-hhCCCeEEEecC----ccCHHHHHHHHHcCCEEEc
Confidence            3 22 345668888766    3355677888888887664

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.58  E-value=0.0054  Score=48.37  Aligned_cols=96  Identities=16%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCCh---h-HhhcCCcc---cCHHHHhcccCEEEEcCCCCcc
Q psy3240          40 LQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKP---E-ADKRGAEH---TNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        40 L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~---~-a~~~g~~~---~sl~ell~~aDvVil~lPlt~~  109 (274)
                      |.|++|++||=   |++.++++..+..+|++.+...+....+   . ....+...   .+++++++.+|+|...---...
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            67999999995   5599999999999999766555433221   1 22334332   3899999999999763211100


Q ss_pred             -----------cHHhccHHHHhcCCCCcEEEEcC-CCc
Q psy3240         110 -----------THHLINRARLESMKPGAILINTS-RGQ  135 (274)
Q Consensus       110 -----------T~~li~~~~l~~mk~gailINv~-RG~  135 (274)
                                 ....++.+.++.++++++|.-+. ||.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~  118 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  118 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcC
Confidence                       11235788899999999998875 544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.55  E-value=0.002  Score=49.86  Aligned_cols=110  Identities=15%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEcc----ChHHHHHHHHHccCC-CeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          39 ALQNSTVGIVGC----GRIGLSVLEKLIPYK-VSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGl----G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      =+.-++|+|||.    |..|..+.+.|+..| .+++.++++...    -.|... .+++|+-...|++++++| .+.+..
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~   79 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD   79 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHH
Confidence            356789999997    899999999998766 455555544321    235443 489999889999999999 455666


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCc-----hhcHHHHHhhhhhhhheee
Q psy3240         113 LINRARLESMKPGAILINTSRGQ-----LVDQEALIDFIADIRVISI  154 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~RG~-----iVde~aL~~~L~~~~i~~~  154 (274)
                      ++.+ ..+.=-++++++-.+-++     ...+++|.+..++.|+.++
T Consensus        80 ~~~~-~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~  125 (129)
T d2csua1          80 TLIQ-CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII  125 (129)
T ss_dssp             HHHH-HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHH-HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEe
Confidence            6633 332222344444433333     2344566666666666544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.54  E-value=0.0015  Score=54.68  Aligned_cols=106  Identities=17%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CCCEEEEEccChHHHH-HHHHHccC-CCeEEEEeCCCCChh---HhhcCCc------ccCHHHHhc--ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLS-VLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAE------HTNIDDLCK--QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~-iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~------~~sl~ell~--~aDvVil~lPlt  107 (274)
                      +--+|||||+|.||+. .+..++.. +++++...++.....   +...++.      +.+++|++.  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999974 66666654 676676655544332   3455553      348899886  478999999864


Q ss_pred             cccHHhccHHHHhcCCCC-cEEEEc-CCCchhcHHHHHhhhhhhhh
Q psy3240         108 PDTHHLINRARLESMKPG-AILINT-SRGQLVDQEALIDFIADIRV  151 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~g-ailINv-~RG~iVde~aL~~~L~~~~i  151 (274)
                      ....  +-.+.++   .| .+++.- -...+-+...|.+.-++.++
T Consensus       112 ~H~~--~~~~al~---~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         112 LHAE--FAIRAFK---AGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             GHHH--HHHHHHH---TTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             hhhh--HHHHhhh---cchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            3222  2223333   33 344442 12233455566665554444

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.52  E-value=0.00067  Score=54.18  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=62.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-CChh-HhhcCCccc-----C-HHHHhc-----ccCEEEEcCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-KKPE-ADKRGAEHT-----N-IDDLCK-----QSDFIIITSALT  107 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-~~~~-a~~~g~~~~-----s-l~ell~-----~aDvVil~lPlt  107 (274)
                      .|.+|.|+|.|.+|...++.++.+|+.+++..++. .+.+ +++.|...+     + .++..+     ..|+|+.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            47899999999999999999999997665554443 3333 666776432     2 233332     378999988742


Q ss_pred             cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240         108 PDTHHLINRARLESMKPGAILINTSRGQ  135 (274)
Q Consensus       108 ~~T~~li~~~~l~~mk~gailINv~RG~  135 (274)
                      ..    + ...++.++++..++.++-+.
T Consensus       112 ~~----~-~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         112 AT----V-DYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             HH----H-HHGGGGEEEEEEEEECCCSS
T ss_pred             hH----H-HHHHHHHhCCCEEEEEeCcc
Confidence            21    2 34577789999999988554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.0015  Score=52.05  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh------cccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC------KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell------~~aDvVil~lPl  106 (274)
                      .|.+|.|.| .|.+|...++.++.+|+++++...+..+.+ .++.|+...      ++.+.+      ...|+|+-++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            478999988 599999999999999998877776544444 566676431      343333      347888887762


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                        ++   + ...++.++++..+|.+|..
T Consensus       105 --~~---~-~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_         105 --EA---I-QRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             --HH---H-HHHHHTEEEEEEEEECSCG
T ss_pred             --hH---H-HHHHHHhcCCCEEEEEccC
Confidence              21   2 3567788899999998753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0017  Score=50.84  Aligned_cols=95  Identities=28%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh------c-C-Cc-ccCHHHHhcccCEEEEcCCC--C
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK------R-G-AE-HTNIDDLCKQSDFIIITSAL--T  107 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~------~-g-~~-~~sl~ell~~aDvVil~lPl--t  107 (274)
                      +||+|||.|.+|..+|..+...+  -+.+.+|....+..  +.+      . . .. ..+..+.++.||+|+++.-.  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999999876444  45566664433222  111      0 0 11 12345568999999998633  1


Q ss_pred             c-ccH-Hhc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         108 P-DTH-HLI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       108 ~-~T~-~li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                      + .++ .++  |.       +.+....|++++++++  .++|.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt--NPvd~  121 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT--NPVDV  121 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC--CcHHH
Confidence            1 222 122  11       2344557899999987  34443

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.013  Score=46.59  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh------Hh----hcCC--c-ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------AD----KRGA--E-HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~----~~g~--~-~~sl~ell~~aDvVil~l  104 (274)
                      .|.|++|++||= .++..+++..+..||+++.+..+..-.+.      ..    ..+.  . ..+++++++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            478999999995 56889999999999997766665432221      11    1122  2 238999999999999753


Q ss_pred             CCC------cc------cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         105 ALT------PD------THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       105 Plt------~~------T~~li~~~~l~~mk~gailINv~  132 (274)
                      =..      .+      ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111      11      11345889999999999999876

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.49  E-value=0.0022  Score=49.64  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCC-------hhH-----hhcCCcc-cCHHHHhc
Q psy3240          39 ALQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKK-------PEA-----DKRGAEH-TNIDDLCK   95 (274)
Q Consensus        39 ~L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~-------~~a-----~~~g~~~-~sl~ell~   95 (274)
                      .+.+++|+|+|+-          .-...+++.|...|+++.+||+.-..       ...     ...+... .+++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            4778999999984          67888999999999988888763211       110     0111222 48999999


Q ss_pred             ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      .||+|+++++.. +-     .+....++++.+++|+-
T Consensus        90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEESS
T ss_pred             hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEECC
Confidence            999999998853 32     23455677889999983

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.41  E-value=0.0027  Score=49.90  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChhH--hh-------cCC--c--ccCHHHHhcccCEEEEcCCC-
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPEA--DK-------RGA--E--HTNIDDLCKQSDFIIITSAL-  106 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a--~~-------~g~--~--~~sl~ell~~aDvVil~lPl-  106 (274)
                      +||+|||.|.+|..+|-.+...|.  +.+.+|........  .+       ...  .  ..+-.|.++.||+|+++... 
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            589999999999999998875553  45566644333221  10       111  1  11234688999999998743 


Q ss_pred             -Ccc-cHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240         107 -TPD-THH-LI--NR-------ARLESMKPGAILINTSR  133 (274)
Q Consensus       107 -t~~-T~~-li--~~-------~~l~~mk~gailINv~R  133 (274)
                       ++. ++- ++  |.       +.+....|.+++++++-
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence             221 111 11  11       23455578899999975

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.38  E-value=0.0086  Score=48.01  Aligned_cols=89  Identities=19%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------C--HHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------N--IDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------s--l~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.+|...++.++.+|+. +++.+.+..+.+ +++.|+...      +  .+++.     ...|+++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            4689999999999999999999999975 455555555555 778887532      1  12221     3488888887


Q ss_pred             CCCcccHHhccHHHHhcCC-CCcEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMK-PGAILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk-~gailINv~R  133 (274)
                      ...+..     ...+..+. .+..+|.++-
T Consensus       108 g~~~~~-----~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         108 GHLETM-----IDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             CCHHHH-----HHHHTTSCTTTCEEEECSC
T ss_pred             CchHHH-----HHHHHHhhcCCeEEEEEEc
Confidence            643221     23334454 4478888774

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.0044  Score=48.58  Aligned_cols=104  Identities=9%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             CCCEEEEEcc----ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240          41 QNSTVGIVGC----GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLIN  115 (274)
Q Consensus        41 ~gktVGIIGl----G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~  115 (274)
                      .-|+|+|||.    +..|..+++.|+.+|.+++.++++...    -.|... .+++|+-..-|++++++|. +.+..++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~----i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~   92 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE----VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE   92 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc----cCCCcccccccccCccceEEEEEeCH-HHHHHHHH
Confidence            4689999996    579999999999999976666654321    134433 4899988889999999994 34445554


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240         116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS  155 (274)
Q Consensus       116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D  155 (274)
                      + .. .+...++++..|-   . .+.+.+.+++.|+.++.
T Consensus        93 e-~~-~~g~k~v~~~~G~---~-~ee~~~~a~~~gi~vig  126 (139)
T d2d59a1          93 Q-AI-KKGAKVVWFQYNT---Y-NREASKKADEAGLIIVA  126 (139)
T ss_dssp             H-HH-HHTCSEEEECTTC---C-CHHHHHHHHHTTCEEEE
T ss_pred             H-HH-HhCCCEEEEeccc---c-CHHHHHHHHHCCCEEEc
Confidence            3 22 2355577777763   2 34566677777887664

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.27  E-value=0.013  Score=46.82  Aligned_cols=68  Identities=21%  Similarity=0.250  Sum_probs=48.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc------C--HHHHh-----cccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT------N--IDDLC-----KQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~------s--l~ell-----~~aDvVil~  103 (274)
                      --.|.+|.|+|.|.+|...++.++..|+++++..++.. +.+ +++.|+...      +  .++..     ...|+++.+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            45689999999999999999999999986555554444 444 778887532      1  23332     237899887


Q ss_pred             CCC
Q psy3240         104 SAL  106 (274)
Q Consensus       104 lPl  106 (274)
                      +..
T Consensus       105 ~g~  107 (174)
T d1p0fa2         105 AGR  107 (174)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.007  Score=44.38  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CCCCEEEEEccChHHH-HHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          40 LQNSTVGIVGCGRIGL-SVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        40 L~gktVGIIGlG~IG~-~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      -+.+++=+||.|-+|. ++|+.|+..|+.|.++|.......  ..+.|+...  .-.+.+...|+|+..-...+++..+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTCHHH
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCCHHH
Confidence            3578999999999994 559999999998888876544322  455677542  3344568899888765444444333

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.25  E-value=0.0034  Score=49.44  Aligned_cols=95  Identities=18%  Similarity=0.333  Sum_probs=56.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChhH--h--hc-----CCc---ccCHHHHhcccCEEEEcCCCCc
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPEA--D--KR-----GAE---HTNIDDLCKQSDFIIITSALTP  108 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a--~--~~-----g~~---~~sl~ell~~aDvVil~lPlt~  108 (274)
                      .||+|||.|.+|..+|-.+...|.  +.+.+|.+..+...  .  ..     +..   ..+-.+.++.||+|+++.-...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence            489999999999999988875554  55666644432221  1  11     111   1123356888999999875321


Q ss_pred             ---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240         109 ---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       109 ---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde  139 (274)
                         +++. ++  |.       ..+....|++++++++  .++|.
T Consensus        82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDv  123 (143)
T d1llda1          82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDI  123 (143)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHH
Confidence               2221 21  11       1244456889999987  44553

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.18  E-value=0.01  Score=46.99  Aligned_cols=88  Identities=18%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             CEEEEEc-cChHHHHHHHHHcc---C-CCeEEEEeCCCCChhHhhcCC----cc-cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIP---Y-KVSKFLYTSRSKKPEADKRGA----EH-TNIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~---~-G~~vv~~~~r~~~~~a~~~g~----~~-~sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      ++||||| .|..|+.+.++|..   + ..+...+..+.........+-    .. ..-.+.++++|+|++|+|.. .+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence            5899999 59999999997753   2 233333333322211111111    11 12235678999999999953 2333


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q psy3240         113 LINRARLESMKPGAILINTSR  133 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~R  133 (274)
                      +. .+.++ -...+++||.|.
T Consensus        80 ~~-~~l~~-~g~~~~VIDlSs   98 (147)
T d1mb4a1          80 VY-PALRQ-AGWKGYWIDAAS   98 (147)
T ss_dssp             HH-HHHHH-TTCCSEEEESSS
T ss_pred             Hh-HHHHH-cCCceEEEeCCc
Confidence            32 23332 344578999885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.12  E-value=0.011  Score=46.40  Aligned_cols=85  Identities=21%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-HhhcCCccc--------CHHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-ADKRGAEHT--------NIDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~~~g~~~~--------sl~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.+|...++.++.+|+++++...+++. .+ +++.|+...        +..+.+     ..+|+|+-++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            36889999999999999999999999876666655543 33 677776432        122222     3478888877


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEE
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILI  129 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailI  129 (274)
                      ....    . .+..+..+++|..++
T Consensus       107 G~~~----~-~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         107 GNVK----V-MRAALEACHKGWGVS  126 (176)
T ss_dssp             CCHH----H-HHHHHHTBCTTTCEE
T ss_pred             CCHH----H-HHHHHHhhcCCceeE
Confidence            5321    1 134455566664433

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.0081  Score=43.57  Aligned_cols=70  Identities=20%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             CCEEEEEccChHHH-HHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccH
Q psy3240          42 NSTVGIVGCGRIGL-SVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        42 gktVGIIGlG~IG~-~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .++|=+||.|-+|. ++|+.|+..|+.|.++|.......  ..+.|+...  .-.+.+..+|+|+..-...+++.
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~np   75 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNP   75 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCH
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCCH
Confidence            36888999999998 789999999997777775543222  456777542  22344578999887654443433

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.07  E-value=0.0078  Score=48.70  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=42.4

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh---HhhcCCc------------------c-cCHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE---ADKRGAE------------------H-TNIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~---a~~~g~~------------------~-~sl~ell~~aDv   99 (274)
                      .+|||.|+|+||+.+++.+... .++++...+..+...   +...+..                  . .++.++...+|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            5899999999999999998754 466666655444322   2222221                  1 145566677888


Q ss_pred             EEEcCCCC
Q psy3240         100 IIITSALT  107 (274)
Q Consensus       100 Vil~lPlt  107 (274)
                      |+=|.|.-
T Consensus        83 ViEcTG~f   90 (172)
T d2czca2          83 IVDATPGG   90 (172)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCCC
Confidence            88877753

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.02  Score=45.44  Aligned_cols=94  Identities=12%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVil~l  104 (274)
                      .|.|++|++||=| ++-.+++..+..+|+++.+..+....+.          ....|..   ..++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999964 5667788888889997777665433221          1122332   238999999999999876


Q ss_pred             CCCccc------------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         105 ALTPDT------------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       105 Plt~~T------------~~li~~~~l~~mk~gailINv~  132 (274)
                      ......            ...++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            543221            1225778899999999999986

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.00  E-value=0.0058  Score=49.46  Aligned_cols=66  Identities=23%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh---HhhcCC------------------ccc-CHHHHhcccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE---ADKRGA------------------EHT-NIDDLCKQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~---a~~~g~------------------~~~-sl~ell~~aDv   99 (274)
                      ++|||-|+|+||+.++|.+...+ ++++...+..+...   ....+.                  ... +..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999986554 66666655544332   222221                  111 45667788999


Q ss_pred             EEEcCCCCc
Q psy3240         100 IIITSALTP  108 (274)
Q Consensus       100 Vil~lPlt~  108 (274)
                      |+-|.|.-.
T Consensus        82 ViEcTG~f~   90 (171)
T d1cf2o1          82 VIDCTPEGI   90 (171)
T ss_dssp             EEECCSTTH
T ss_pred             EEEccCCCC
Confidence            999998643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.99  E-value=0.018  Score=45.48  Aligned_cols=67  Identities=24%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-HhhcCCccc--------CHHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-ADKRGAEHT--------NIDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~~~g~~~~--------sl~ell-----~~aDvVil~l  104 (274)
                      =.|.+|.|+|.|.+|...++.++.+|+.+++...+..+ .+ +.+.|+...        ..++..     ...|+++-+.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~  106 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence            36899999999999999999999999756655555443 34 666666421        122222     2368888876


Q ss_pred             CC
Q psy3240         105 AL  106 (274)
Q Consensus       105 Pl  106 (274)
                      ..
T Consensus       107 G~  108 (176)
T d2jhfa2         107 GR  108 (176)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.014  Score=45.80  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             CEEEEEcc-ChHHHHHHHHHc---cCCCeEEEEeCCCCChh--Hhhc-CC--c-------ccCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLI---PYKVSKFLYTSRSKKPE--ADKR-GA--E-------HTNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~---~~G~~vv~~~~r~~~~~--a~~~-g~--~-------~~sl~ell~~aDvVil~lPl  106 (274)
                      +||+|||. |.+|+.+|-.|.   .++-+.+.+|.. +...  +.+. .+  .       ..+..+.++.||+|+++.-.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence            58999995 999999998764   345555666643 3332  1111 11  0       12335578899999998742


Q ss_pred             --Ccc-cH-Hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240         107 --TPD-TH-HLI--NR-------ARLESMKPGAILINTSRGQLVDQE  140 (274)
Q Consensus       107 --t~~-T~-~li--~~-------~~l~~mk~gailINv~RG~iVde~  140 (274)
                        .+. +| .++  |.       +.+....|++++|.++.  ++|.-
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~m  124 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTT  124 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHHH
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchHH
Confidence              221 21 122  11       23444568899999973  45543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.85  E-value=0.005  Score=46.62  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=53.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHHH----hcccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDL----CKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~el----l~~aDvVil~lPlt~~T~~  112 (274)
                      |.+-|+|+|.+|+.+++.|++.+.  ++.+....... ....|+...     +.+-+    +.+|+.++++.+....+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~i--~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGGE--EEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcCCCC--EEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            568899999999999999987654  45555444333 455565432     22222    57799999988864443  


Q ss_pred             hccHHHHhcCCCC-cEEEEc
Q psy3240         113 LINRARLESMKPG-AILINT  131 (274)
Q Consensus       113 li~~~~l~~mk~g-ailINv  131 (274)
                      +.-....+.+.|. .+++-+
T Consensus        77 ~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          77 IHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHHHCCCceEEEEE
Confidence            3333445555555 344444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0033  Score=50.49  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh-------cCCc---ccCHHHHhcccCEEEEcC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK-------RGAE---HTNIDDLCKQSDFIIITS  104 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~-------~g~~---~~sl~ell~~aDvVil~l  104 (274)
                      .+...||+|||.|.+|..+|..|...|.  +.+.+|.+.....  +.+       .+..   ..+-.+.++.||+|+++.
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            4566799999999999999999987664  4566664433222  111       1111   112335568999999976


Q ss_pred             CCC--c-ccHH-hc--cHHH-------HhcCCCCcEEEEcCC
Q psy3240         105 ALT--P-DTHH-LI--NRAR-------LESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt--~-~T~~-li--~~~~-------l~~mk~gailINv~R  133 (274)
                      ...  + +++. ++  |.+.       +....|++++++++.
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            431  1 1221 11  1221       223468889999874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.77  E-value=0.0064  Score=49.74  Aligned_cols=91  Identities=13%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh-HhhcCCccc------CHHH----Hh--cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE-ADKRGAEHT------NIDD----LC--KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~-a~~~g~~~~------sl~e----ll--~~aDvVil~lPl  106 (274)
                      .|.+|.|+|.|.+|...++.++.+|+.++ +.+++..+.+ +++.|+..+      ++.+    +.  ..+|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            58899999999999999999999998555 4455444444 677776532      2322    21  237898887752


Q ss_pred             Ccc-----------cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         107 TPD-----------THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~~-----------T~~li~~~~l~~mk~gailINv~  132 (274)
                      ...           +...+ ...+..++++..++-++
T Consensus       105 ~~~~~~~~~~~~~~~~~~l-~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVL-NSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHH-HHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHHH-HHHHHHHhcCCEEEEee
Confidence            111           11112 24455567777777776

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.69  E-value=0.0039  Score=49.18  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHH-HHh-----cccCEEEEcCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NID-DLC-----KQSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~-ell-----~~aDvVil~lP  105 (274)
                      .|.+|.|+|. |.+|...++.++..|. ++++.+.+..+.+ +++.|+...      ++. ++.     ...|+|+-++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            5789999995 9999999999999886 4445554443334 666776321      332 222     23788888776


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      .. .+   + ...++.++++..++.+|
T Consensus       107 ~~-~~---~-~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 SE-KT---L-SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CH-HH---H-TTGGGGEEEEEEEEECC
T ss_pred             cc-hH---H-HhhhhhcccCCEEEEec
Confidence            32 21   2 23466788998888886

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.024  Score=44.54  Aligned_cols=88  Identities=13%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHc---cCCC-eEEEEeCCCCC-hh-Hhh-cCCccc--CHHHHhcccCEEEEcCCCCcccHH
Q psy3240          43 STVGIVGC-GRIGLSVLEKLI---PYKV-SKFLYTSRSKK-PE-ADK-RGAEHT--NIDDLCKQSDFIIITSALTPDTHH  112 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~---~~G~-~vv~~~~r~~~-~~-a~~-~g~~~~--sl~ell~~aDvVil~lPlt~~T~~  112 (274)
                      |+|||||. |..|+.+.++|.   .|-. +...+.++... .. ... ......  .-.+.++.+|++++++|... .+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence            58999996 999999998664   2332 23333332221 11 111 111111  22245788999999998532 222


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q psy3240         113 LINRARLESMKPGAILINTSR  133 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~R  133 (274)
                      + - ..+..-+.++++||.|.
T Consensus        81 ~-~-~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          81 I-Y-PKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             H-H-HHHHHTTCCCEEEECSS
T ss_pred             h-h-HHHHhcCCCeecccCCc
Confidence            2 2 22222344578999885

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.045  Score=42.93  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             CCCCEEEEEc-c-ChHHHHHHHHHccCCCeEEEEeCCCCCh--h--------HhhcCCc--c-cCHHHHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVG-C-GRIGLSVLEKLIPYKVSKFLYTSRSKKP--E--------ADKRGAE--H-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIG-l-G~IG~~iA~~L~~~G~~vv~~~~r~~~~--~--------a~~~g~~--~-~sl~ell~~aDvVil~l  104 (274)
                      |+|++|++|| . .++-.+++..+..||++..+..+..-.+  .        +...+..  . .+++++++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            6899999999 3 6899999999999999766665543211  1        1122322  2 38999999999999865


Q ss_pred             CCCcc-------c-----HH-hccHHHHhcCCCCcEEEEcC---CCchhcH
Q psy3240         105 ALTPD-------T-----HH-LINRARLESMKPGAILINTS---RGQLVDQ  139 (274)
Q Consensus       105 Plt~~-------T-----~~-li~~~~l~~mk~gailINv~---RG~iVde  139 (274)
                      --...       .     .. +.+......+|++++|.-+.   ||.=|+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~  131 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  131 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccch
Confidence            32211       0     01 22334455678999999875   5554443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0093  Score=46.24  Aligned_cols=84  Identities=8%  Similarity=0.039  Sum_probs=54.0

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-----HhhcCCccc-----C---HHH-HhcccCEEEEcCCCCcc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----ADKRGAEHT-----N---IDD-LCKQSDFIIITSALTPD  109 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----a~~~g~~~~-----s---l~e-ll~~aDvVil~lPlt~~  109 (274)
                      ++-|+|+|.+|+.+++.|...|.++++.+.......     ....++...     +   |++ -+.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            589999999999999999999998888876543211     222344321     2   222 25679999999886444


Q ss_pred             cHHhccHHHHhcCCCCcEEE
Q psy3240         110 THHLINRARLESMKPGAILI  129 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailI  129 (274)
                      +  +.-....+.+.|...+|
T Consensus        85 n--~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCEE
T ss_pred             H--HHHHHHHHHhCCCCceE
Confidence            3  33334444555554333

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.29  E-value=0.0094  Score=47.84  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ||||.|||.|.-|-..|..|+..|.+++++..+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999888887543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.033  Score=46.09  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCCh
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKP   78 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~   78 (274)
                      ++|+||++.|-|. +.||+++|++|...|+++++.+++..+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~   42 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG   42 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            4799999999996 6799999999999999877777655443

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.28  E-value=0.017  Score=45.18  Aligned_cols=93  Identities=20%  Similarity=0.297  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCc---ccCHHHHhcccCEEEEcCCCC
Q psy3240          40 LQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAE---HTNIDDLCKQSDFIIITSALT  107 (274)
Q Consensus        40 L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~---~~sl~ell~~aDvVil~lPlt  107 (274)
                      |.|++|++||=   +++..+++..+..+|++..+..+..-.+.      ..+.+..   ..+++++++.+|+|....-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            78999999996   78999999999999997777665433221      1223332   248999999999998865432


Q ss_pred             cccH-----------HhccHHHHhcCCCCcEEEEcC
Q psy3240         108 PDTH-----------HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       108 ~~T~-----------~li~~~~l~~mk~gailINv~  132 (274)
                      ....           ..++.+.++.+++.+++.-..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            2110           013455667778888777765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.20  E-value=0.021  Score=48.30  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .+|+||++.|.| .+.||+++|+.|...|+++++.+++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            379999999999 5789999999999999977776654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.017  Score=48.34  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             CCCCCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeCC
Q psy3240          36 CGPALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +..+|+||++.|-|.+   -||+++|++|...|+++++.++.
T Consensus         2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3468999999999975   49999999999999977665543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.17  E-value=0.011  Score=47.47  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             CCEEEEEccChHHHHHHH---HHc--cC-CCeEEEEeCCCCChhH---------hhcCC--cc---cCHHHHhcccCEEE
Q psy3240          42 NSTVGIVGCGRIGLSVLE---KLI--PY-KVSKFLYTSRSKKPEA---------DKRGA--EH---TNIDDLCKQSDFII  101 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~---~L~--~~-G~~vv~~~~r~~~~~a---------~~~g~--~~---~sl~ell~~aDvVi  101 (274)
                      +.||+|||.|.+|...+-   .++  .+ +-+.+.+|.+..+.+.         ...+.  ..   .+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  33 3456666655433221         11222  11   27899999999999


Q ss_pred             EcCC
Q psy3240         102 ITSA  105 (274)
Q Consensus       102 l~lP  105 (274)
                      ++.-
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0077  Score=48.53  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCC-CChh--HhhcCCccc------CHHHHhcc-----cCEEEEcCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRS-KKPE--ADKRGAEHT------NIDDLCKQ-----SDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~-~~~~--a~~~g~~~~------sl~ell~~-----aDvVil~lP  105 (274)
                      .+++|.|.| .|.+|...++.++.+|+++++....+ .+..  ..+.|+..+      ++.+.+++     +|+|+-++-
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            347899999 59999999999999999766654333 2222  345666432      55665555     999999885


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .  +    .-...++.++++..++.++.
T Consensus       110 g--~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 G--D----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             H--H----HHHHHHTTEEEEEEEEEC--
T ss_pred             c--h----hHHHHhhhccccccEEEecc
Confidence            2  1    22467888999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.14  E-value=0.1  Score=40.56  Aligned_cols=67  Identities=22%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc-C-------HHHHh-----cccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT-N-------IDDLC-----KQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~-s-------l~ell-----~~aDvVil~l  104 (274)
                      -.|.+|.|+|.|.+|...+..++..|..+++..++.+ +.+ +++.|+..+ +       .++..     ...|+++-++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~  106 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  106 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeec
Confidence            4689999999999999999999998886665555544 444 778887532 1       12222     2478998887


Q ss_pred             CC
Q psy3240         105 AL  106 (274)
Q Consensus       105 Pl  106 (274)
                      ..
T Consensus       107 G~  108 (175)
T d1cdoa2         107 GN  108 (175)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.07  E-value=0.034  Score=44.95  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEc-c-ChHHHHHHHHHccCCCeEEEEeCCCCC--hh--------HhhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVG-C-GRIGLSVLEKLIPYKVSKFLYTSRSKK--PE--------ADKRGAE--H-TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIG-l-G~IG~~iA~~L~~~G~~vv~~~~r~~~--~~--------a~~~g~~--~-~sl~ell~~aDvVil~  103 (274)
                      .|.|.+|++|| . -++..+++..+..||+++.+..+..-.  +.        ....+..  . .++++.++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            58899999999 4 589999999999999977776664321  11        1122332  2 3899999999999885


Q ss_pred             CCCCcc--c-----------HHhc-cHHHHhcCCCCcEEEEcC
Q psy3240         104 SALTPD--T-----------HHLI-NRARLESMKPGAILINTS  132 (274)
Q Consensus       104 lPlt~~--T-----------~~li-~~~~l~~mk~gailINv~  132 (274)
                      .=.+..  .           ...+ ++..+..++++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            532111  0           0112 344556688999999886

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.00  E-value=0.039  Score=46.16  Aligned_cols=85  Identities=9%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcc-C--hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240          40 LQNSTVGIVGC-G--RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        40 L~gktVGIIGl-G--~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~  116 (274)
                      |+||++.|.|. |  -||.++|+.|...|+++++.+++.......      ..+.+....+.++..-+....+...+++ 
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~------~~l~~~~~~~~~~~~d~~~~~~~~~~~~-   75 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRV------RPIAQELNSPYVYELDVSKEEHFKSLYN-   75 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHH------HHHHHHTTCCCEEECCTTCHHHHHHHHH-
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH------HHHHhhCCceeEeeecccchhhHHHHHH-
Confidence            89999999996 5  499999999999999887777543221110      1233444455565554544444455553 


Q ss_pred             HHHhcCCCCcEEEEc
Q psy3240         117 ARLESMKPGAILINT  131 (274)
Q Consensus       117 ~~l~~mk~gailINv  131 (274)
                      +..+...+--++||.
T Consensus        76 ~~~~~~g~id~lV~n   90 (274)
T d2pd4a1          76 SVKKDLGSLDFIVHS   90 (274)
T ss_dssp             HHHHHTSCEEEEEEC
T ss_pred             HHHHHcCCCCeEEee
Confidence            333444444445543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.97  E-value=0.018  Score=45.89  Aligned_cols=88  Identities=14%  Similarity=0.020  Sum_probs=63.0

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------C-HHHHh-----cccCEEEEcCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------N-IDDLC-----KQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------s-l~ell-----~~aDvVil~lPl  106 (274)
                      .|++|.|.|. |.+|+..++.++..|++++...++..+.+ .++.|+..+      + .++++     ...|+|+-++..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~  108 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  108 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCc
Confidence            5899999998 77999999999999998777765544444 566676421      2 22322     348999998852


Q ss_pred             CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240         107 TPDTHHLINRARLESMKPGAILINTSRG  134 (274)
Q Consensus       107 t~~T~~li~~~~l~~mk~gailINv~RG  134 (274)
                        ++    -.+.++.++++..++.++..
T Consensus       109 --~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         109 --EF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             --HH----HHHHGGGEEEEEEEEECCCG
T ss_pred             --hh----hhhhhhhccCCCeEEeecce
Confidence              21    24678889999999998753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.97  E-value=0.055  Score=42.12  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCC--eEEEEeCCCCC--hh--Hhhc----CC----cc-cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKV--SKFLYTSRSKK--PE--ADKR----GA----EH-TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~--~vv~~~~r~~~--~~--a~~~----g~----~~-~sl~ell~~aDvVil~lPl  106 (274)
                      .||+||| .|.+|+.+|..+...+.  +.+.+|....+  ..  +.+.    ..    .. ..-.+.++.||+|+++.-.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            4899999 69999999999976654  45556532221  11  1111    11    11 1223456899999997542


Q ss_pred             --Cc-ccHH-hc--cH-------HHHhcCCCCcEEEEcC
Q psy3240         107 --TP-DTHH-LI--NR-------ARLESMKPGAILINTS  132 (274)
Q Consensus       107 --t~-~T~~-li--~~-------~~l~~mk~gailINv~  132 (274)
                        .+ ++|- ++  |.       +.+....|.++++.++
T Consensus        81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence              22 2221 11  11       2355567889999985

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.94  E-value=0.043  Score=46.60  Aligned_cols=50  Identities=10%  Similarity=0.089  Sum_probs=38.2

Q ss_pred             CCCccCCCCCCCCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          26 EWKSWAPNFMCGPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        26 ~w~~~~~~~~~g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      -|+.-...-|.-.+|+||++.|-| .|.||+++|+.|...|+++++.+++.
T Consensus         9 ~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_           9 FFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             HSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            344333333334689999999998 58999999999999999877777554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.90  E-value=0.011  Score=46.42  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~   76 (274)
                      .+|||.|||.|..|-..|..|+..|++ +++++....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            479999999999999999999999985 677775544

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.85  E-value=0.017  Score=42.80  Aligned_cols=35  Identities=11%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      -+++.|||.|.+|-.+|..+..+|.++.++.+...
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            37999999999999999999999998888775543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.83  E-value=0.083  Score=44.33  Aligned_cols=86  Identities=22%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             CCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc---ccHHhc
Q psy3240          39 ALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP---DTHHLI  114 (274)
Q Consensus        39 ~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~---~T~~li  114 (274)
                      +|+||++.|-|.+ -||.++|+.|.+.|+++++..++..+....      ..+.+......+.+..+-.+.   +.+.++
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   75 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL------AELKAINPKVNITFHTYDVTVPVAESKKLL   75 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH------HHHHHHCTTSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH------HHHHhhCCCCCEEEEEeecCCCHHHHHHHH
Confidence            6999999999965 699999999999999887776655543311      123334444566666665542   234445


Q ss_pred             cHHHHhcC-CCCcEEEEcC
Q psy3240         115 NRARLESM-KPGAILINTS  132 (274)
Q Consensus       115 ~~~~l~~m-k~gailINv~  132 (274)
                      ++- .+.. +.+ +|||.+
T Consensus        76 ~~~-~~~~g~iD-ilvnnA   92 (254)
T d1sbya1          76 KKI-FDQLKTVD-ILINGA   92 (254)
T ss_dssp             HHH-HHHHSCCC-EEEECC
T ss_pred             HHH-HHHcCCCC-EEEeCC
Confidence            432 2222 233 555654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.016  Score=45.47  Aligned_cols=62  Identities=26%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCCh--h--Hhh-----c--C--Ccc----cCHHHHhcccCEEEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKP--E--ADK-----R--G--AEH----TNIDDLCKQSDFIII  102 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~--~--a~~-----~--g--~~~----~sl~ell~~aDvVil  102 (274)
                      +||+|||. |.+|+.+|..+...+.  +.+.+|.+....  +  +.+     .  .  ...    .+..+.++.||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999987774  556676553211  1  110     0  1  111    123467889999999


Q ss_pred             cC
Q psy3240         103 TS  104 (274)
Q Consensus       103 ~l  104 (274)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.011  Score=45.53  Aligned_cols=29  Identities=28%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLY   71 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~   71 (274)
                      ++|+|+|+ |+||+.+++.+...|++.+..
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            47999996 999999999999888865544

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.069  Score=43.07  Aligned_cols=95  Identities=15%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCC-CeEEEEeCCCCChh-Hh----h-cC---CcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-AD----K-RG---AEHTNIDDLCKQSDFIIITSALTPDTH  111 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~----~-~g---~~~~sl~ell~~aDvVil~lPlt~~T~  111 (274)
                      .+|||+|. |..|+.+.+.|...- .+......++.... ..    . .+   ....+.+++..++|+|++++|.... .
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence            47999994 999999999997643 33333333322211 11    1 11   1223777888899999999996432 2


Q ss_pred             HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         112 HLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                           +..... .+..+||.|..=-.+....++
T Consensus        81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             -----HHHHhh-ccceEEecCccccccchhhHH
Confidence                 333333 578999998665565555554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.03  Score=47.08  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             CCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc--ccHHhc
Q psy3240          38 PALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP--DTHHLI  114 (274)
Q Consensus        38 ~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~--~T~~li  114 (274)
                      ++|.||++.|-|.+ .||+++|+.|...|+++++.+++..+.....     .++.+.  ...+....+-.++  +.+.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~-----~~~~~~--~~~~~~~~~Dvs~~~~v~~~~   75 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA-----AKCKGL--GAKVHTFVVDCSNREDIYSSA   75 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHHHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----HHHHhc--CCcEEEEEeeCCCHHHHHHHH
Confidence            57999999999975 5999999999999998777765432221000     012221  2345555555443  233344


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q psy3240         115 NRARLESMKPGAILINTSR  133 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~R  133 (274)
                      + ...+...+=-++||.+.
T Consensus        76 ~-~i~~~~g~idilinnag   93 (244)
T d1yb1a_          76 K-KVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             H-HHHHHTCCCSEEEECCC
T ss_pred             H-HHHHHcCCCceeEeecc
Confidence            3 33444554556677654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.69  E-value=0.018  Score=43.11  Aligned_cols=34  Identities=18%  Similarity=0.547  Sum_probs=30.1

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      -++|.|||.|.+|-.+|..|+.+|.++.++.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999887776543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.018  Score=43.40  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +++.|||.|.||-.+|..|..+|+++.++..+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            7999999999999999999999998877765443

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.65  E-value=0.00015  Score=56.10  Aligned_cols=23  Identities=4%  Similarity=-0.135  Sum_probs=20.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK   65 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G   65 (274)
                      ++++|+|+|.||+++|+++++||
T Consensus        99 r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          99 RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CCEEEEcCCHHHHHHHHHHHhcC
Confidence            57899999999999999999997

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.59  E-value=0.022  Score=42.65  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .+++.|||.|.||-.+|..++.+|+++.+......
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            48899999999999999999999998877765443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.021  Score=44.91  Aligned_cols=46  Identities=17%  Similarity=0.108  Sum_probs=35.2

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE   86 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~   86 (274)
                      .|++|.|.| .|.+|..+++.++..|+++++.+.+..+.+ .++.|+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~   75 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW   75 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe
Confidence            488999995 566999999999999998777776655444 5555543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.56  E-value=0.077  Score=42.30  Aligned_cols=87  Identities=6%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             CCCEEEEE--ccChHHHHHHHHHccCCCeEEEEeCCCCChh-----HhhcCCccc-CH--------HHHh--------cc
Q psy3240          41 QNSTVGIV--GCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----ADKRGAEHT-NI--------DDLC--------KQ   96 (274)
Q Consensus        41 ~gktVGII--GlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----a~~~g~~~~-sl--------~ell--------~~   96 (274)
                      .|.++.|+  |.|.+|+...+.++.+|++++...++....+     .++.|+..+ +.        .+.+        ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47889988  6799999999999999998877765554432     345676432 11        1111        23


Q ss_pred             cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240          97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus        97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .|+|+-++. .+.     -...++.|+++..+|.++.
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEECC
Confidence            789998774 222     2456788999999999873

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.54  E-value=0.027  Score=41.59  Aligned_cols=36  Identities=14%  Similarity=0.036  Sum_probs=31.1

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ..+++|.|||.|.+|-.+|..|+.+|.++.++....
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            457999999999999999999999999777766543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.49  E-value=0.029  Score=46.71  Aligned_cols=107  Identities=10%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             CCCCEEEEEccChHH----HHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCc----ccCHHHHhc--ccCEEEEcC
Q psy3240          40 LQNSTVGIVGCGRIG----LSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAE----HTNIDDLCK--QSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGlG~IG----~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~----~~sl~ell~--~aDvVil~l  104 (274)
                      -+-.+|||||+|.+|    +.-+..++..  +++++...++.....   +...+..    +.+++|+++  +-|+|++++
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence            344689999999854    4444455543  566665555544322   3444543    348999985  478999999


Q ss_pred             CCCcccHHhccHHHHhcC----CCCcEEEEcCCC-chhcHHHHHhhhhh
Q psy3240         105 ALTPDTHHLINRARLESM----KPGAILINTSRG-QLVDQEALIDFIAD  148 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~m----k~gailINv~RG-~iVde~aL~~~L~~  148 (274)
                      |......  +-...++.-    ..-.+++.=-=+ .+-+.+.+++..++
T Consensus        94 p~~~h~~--~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~  140 (237)
T d2nvwa1          94 KVPEHYE--VVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ  140 (237)
T ss_dssp             CHHHHHH--HHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCcchhh--HHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhh
Confidence            8533222  222333221    112467664322 23355666665544

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.039  Score=43.30  Aligned_cols=93  Identities=18%  Similarity=0.345  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCC-Ch--h----HhhcCCcc---cCHHHHhcccCEEEEcCCC
Q psy3240          40 LQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSK-KP--E----ADKRGAEH---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~-~~--~----a~~~g~~~---~sl~ell~~aDvVil~lPl  106 (274)
                      |.|.+|++||=   |++..+++..+..+|...+.+..+.. .+  .    ....+...   .+++++++++|+|....-.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            68999999995   66999999999999764544443322 11  1    23334432   3889999999999875432


Q ss_pred             Ccc----------cHHhccHHHHhcCCCCcEEEEcC
Q psy3240         107 TPD----------THHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       107 t~~----------T~~li~~~~l~~mk~gailINv~  132 (274)
                      ...          ....++.+.++.++++++|.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            221          11223566778888899988875

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.046  Score=49.97  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~   75 (274)
                      |++++|.|||+|.+|..+|+.|...|.. ..++|...
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            6788999999999999999999877763 45565433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.024  Score=42.17  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ++|.|||.|.+|-.+|..|+.+|.++.++.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            789999999999999999999999877776544

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.35  E-value=0.034  Score=44.67  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHHHh-----cccCEEEEcC
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDDLC-----KQSDFIIITS  104 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~ell-----~~aDvVil~l  104 (274)
                      |..-.|.+|.|-| .|.+|....+.++..|++++...++..+.+ +.+.|+..+     ..++..     +..|+|+-++
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence            3456689999999 599999999999999998888877767666 677777542     122222     2478888877


Q ss_pred             CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         105 ALTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       105 Plt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      ...      .-...++.|+++..++.++.
T Consensus       107 gg~------~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         107 GGR------TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             TTT------THHHHHHTEEEEEEEEECSC
T ss_pred             Cch------hHHHHHHHhCCCceEEEeec
Confidence            531      23567888999999998874

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.28  E-value=0.026  Score=44.39  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             CCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCccc------
Q psy3240          41 QNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDT------  110 (274)
Q Consensus        41 ~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T------  110 (274)
                      .|.+|++||=   +++..+++..+..+|+++.+..+..-.+.  ...+. ..+++|+++.+|+|.....-....      
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~--~~~~~~~~~~~ea~~~aDviy~~r~q~e~~~~~~~~   79 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE--ENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ   79 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc--ccceeEEEechhccccCceeeeeEEEEcccccchhh
Confidence            5899999995   68999999999999997665554332221  22232 248999999999988753322110      


Q ss_pred             H-----HhccHHHHhcCCCCcEEEEcC
Q psy3240         111 H-----HLINRARLESMKPGAILINTS  132 (274)
Q Consensus       111 ~-----~li~~~~l~~mk~gailINv~  132 (274)
                      +     ..++.+.+..++++++|.-+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~i~MH~L  106 (151)
T d2at2a2          80 EGYLNKYGLTVERAERMKRHAIIMHPA  106 (151)
T ss_pred             HHhhhhhcchhhhhhhcccCeEEecCC
Confidence            0     112445666677888887764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.031  Score=43.46  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=49.6

Q ss_pred             CEEEEEcc-ChHHHHHHHHHcc--C-CCeEEEEeCCCCChhHhhcCC---cccC-HHHHhcccCEEEEcCCCCcccHHhc
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIP--Y-KVSKFLYTSRSKKPEADKRGA---EHTN-IDDLCKQSDFIIITSALTPDTHHLI  114 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~--~-G~~vv~~~~r~~~~~a~~~g~---~~~s-l~ell~~aDvVil~lPlt~~T~~li  114 (274)
                      .+|||||. |..|+.+.+.|..  + ..+......+...-.......   ...+ ..+.+..+|++++++|... +..+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence            57999996 9999999999953  2 233333333322111111111   1112 2345678999999998532 22222


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q psy3240         115 NRARLESMKPGAILINTSR  133 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~R  133 (274)
                       ...   .++|..+||.|.
T Consensus        82 -~~~---~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -ERA---RAAGCSVIDLSG   96 (144)
T ss_dssp             -HHH---HHTTCEEEETTC
T ss_pred             -ccc---ccCCceEEeech
Confidence             122   357899999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.22  E-value=0.021  Score=43.03  Aligned_cols=31  Identities=13%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      +++.|||.|.||-.+|..|+.+|.++.++.+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~   51 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVR   51 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEe
Confidence            5899999999999999999999998888764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.0099  Score=47.57  Aligned_cols=62  Identities=21%  Similarity=0.268  Sum_probs=40.5

Q ss_pred             CEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh-H---------hhcCCcc-cCHHHHhcccCEEEEcC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE-A---------DKRGAEH-TNIDDLCKQSDFIIITS  104 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~-a---------~~~g~~~-~sl~ell~~aDvVil~l  104 (274)
                      .+|+|+|+ |+||+.+++.+.. -+++.+....+...+. .         ...++.. .+++++++.+|+|+--.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            47999995 9999999998865 4676555554443221 0         0112222 26778888999887644

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.12  E-value=0.039  Score=43.89  Aligned_cols=90  Identities=13%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHH----h-----cccCEEEEcCC
Q psy3240          38 PALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDL----C-----KQSDFIIITSA  105 (274)
Q Consensus        38 ~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~el----l-----~~aDvVil~lP  105 (274)
                      ....|.+|.|-| .|.+|....+.++.+|++++....+..+.+ ..+.|+..+ +-++.    +     +..|+|+-++-
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            344577899998 599999999999999998888777666665 677787643 33322    1     23777777663


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .  .    .-.+.++.++++..++.++.
T Consensus       100 g--~----~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         100 G--K----QLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             T--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             H--H----HHHHHHHHhccCceEEEeec
Confidence            2  1    12467788888888888764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.10  E-value=0.024  Score=43.12  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=29.1

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCC--CeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~   75 (274)
                      +||+|.|||.|..|-.+|..|+..+  .++++++++.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998876  4566666544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.028  Score=42.30  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |++.|||.|.||-.+|..|+.+|.++.++.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999887776544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.059  Score=43.45  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +....|+|+|||.|..|-+.|..|+..|+++++++....
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            567889999999999999999999999999888876543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.068  Score=44.16  Aligned_cols=36  Identities=8%  Similarity=0.116  Sum_probs=31.3

Q ss_pred             CCCCEEEEEccCh---HHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGCGR---IGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGlG~---IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |+||++.|-|.+.   ||+++|+.|...|+++++.+++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999764   99999999999999887777653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.86  E-value=0.056  Score=45.14  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            699999999996 579999999999999987777654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.85  E-value=0.13  Score=41.19  Aligned_cols=91  Identities=10%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccC-CCeEEEEeCCCCCh-hH-h----hcCCc----ccCHHHHhcccCEEEEcCCCCcc
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPY-KVSKFLYTSRSKKP-EA-D----KRGAE----HTNIDDLCKQSDFIIITSALTPD  109 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~a-~----~~g~~----~~sl~ell~~aDvVil~lPlt~~  109 (274)
                      ..+||||| .|-.|+.+.+.|... .++......+.... .. .    ..+..    ....++.+..+|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            45799999 599999999999864 33333333332221 11 1    11111    11234567889999999996432


Q ss_pred             cHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240         110 THHLINRARLESMKPGAILINTSRGQLVD  138 (274)
Q Consensus       110 T~~li~~~~l~~mk~gailINv~RG~iVd  138 (274)
                            .+....+.+...+|+.+.+.-..
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ------HHHHHHHHhcCcccccchhhhcc
Confidence                  34444555555666665554443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.79  E-value=0.066  Score=45.06  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .+|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999997 569999999999999987777653

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.76  E-value=0.044  Score=43.64  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=38.6

Q ss_pred             CEEEEEccChHH--HHHHHHHcc---CCC-eEEEEeCCCCChh--H---------hhcCCc-----ccCHHHHhcccCEE
Q psy3240          43 STVGIVGCGRIG--LSVLEKLIP---YKV-SKFLYTSRSKKPE--A---------DKRGAE-----HTNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGlG~IG--~~iA~~L~~---~G~-~vv~~~~r~~~~~--a---------~~~g~~-----~~sl~ell~~aDvV  100 (274)
                      .||.|||.|+.|  ..++..++.   +.. +.+.+|.......  +         ...+..     ..+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            489999999776  445544443   332 4555664433221  1         111222     13678899999999


Q ss_pred             EEcCCC
Q psy3240         101 IITSAL  106 (274)
Q Consensus       101 il~lPl  106 (274)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.73  E-value=0.046  Score=41.02  Aligned_cols=35  Identities=29%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .++++.|||.|.+|-.+|..|+..|.++.++....
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            36899999999999999999999999887776544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.067  Score=45.02  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      -|+||++.|.|. +-||+++|+.|.+.|+++++.+++.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            399999999997 4699999999999999877776543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.05  Score=45.77  Aligned_cols=38  Identities=13%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      |..|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            56799999999996 789999999999999987777643

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.60  E-value=0.027  Score=44.59  Aligned_cols=64  Identities=14%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             CEEEEEccChHHHHHHHH--H---ccC-CCeEEEEeCCCCChh-Hh-------hcCCc---ccCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVGCGRIGLSVLEK--L---IPY-KVSKFLYTSRSKKPE-AD-------KRGAE---HTNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~--L---~~~-G~~vv~~~~r~~~~~-a~-------~~g~~---~~sl~ell~~aDvVil~lP  105 (274)
                      +||+|||.|.+|.+.+-.  +   ..+ .-+.+.+|....+.. ..       .....   ..+.++.++.||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            489999999988776632  1   222 234666665443322 11       11111   1378899999999999875


Q ss_pred             C
Q psy3240         106 L  106 (274)
Q Consensus       106 l  106 (274)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.59  E-value=0.043  Score=43.91  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ..|+|.|||.|..|-+.|..|+..|.++.++++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3568999999999999999999999998888864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.58  E-value=0.058  Score=40.36  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      -.+++|.|||.|.+|-.+|..|...|.++.+.....
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            457899999999999999999999999877776543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.55  E-value=0.082  Score=44.29  Aligned_cols=40  Identities=15%  Similarity=0.162  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKK   77 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~   77 (274)
                      .+|+||++.|-|. +.||+++|+.|...|+++++.+++..+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4799999999996 469999999999999987777765544

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.55  E-value=0.15  Score=41.73  Aligned_cols=96  Identities=14%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             HHHHHHccCCCeEEEEeCCCCCh------hHhhcCCccc-CHHHHhcccCEEEEc-CCCCcccHHhccHHHHhcCCCCcE
Q psy3240          56 SVLEKLIPYKVSKFLYTSRSKKP------EADKRGAEHT-NIDDLCKQSDFIIIT-SALTPDTHHLINRARLESMKPGAI  127 (274)
Q Consensus        56 ~iA~~L~~~G~~vv~~~~r~~~~------~a~~~g~~~~-sl~ell~~aDvVil~-lPlt~~T~~li~~~~l~~mk~gai  127 (274)
                      ..+++|.+.|.+ |.+-......      +..+.|+..+ +.++++.++|+|+.. .|...+    .+.+.++.||+|++
T Consensus        21 ~~vkkl~~~G~~-V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~   95 (194)
T d1l7da2          21 EVVKKLVGLGFE-VIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAV   95 (194)
T ss_dssp             HHHHHHHHTTCE-EEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCE
T ss_pred             HHHHHHHHCCCE-EEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceE
Confidence            567888899995 4454433321      1456788765 678999999988754 454322    23356788999999


Q ss_pred             EEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         128 LINTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       128 lINv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      +|-.--  .....++++.|.++++..+++..
T Consensus        96 li~~l~--p~~~~~~~~~l~~~~it~~a~e~  124 (194)
T d1l7da2          96 LMCHLG--ALTNRPVVEALTKRKITAYAMEL  124 (194)
T ss_dssp             EEEECC--GGGCHHHHHHHHHTTCEEEEGGG
T ss_pred             EEEecc--cccchhHHHHHHhcCceEEeeec
Confidence            998753  45677889999999998888766

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.34  E-value=0.077  Score=39.19  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=45.9

Q ss_pred             CCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcC
Q psy3240          41 QNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITS  104 (274)
Q Consensus        41 ~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~l  104 (274)
                      ..|+|||+|+=          .-.-.+.+.|+..|+++.+|||.-.... ...+.... ++++++..||+|++..
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEcC
Confidence            33689999973          5678899999999998888887654332 12333333 8999999999877644

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.31  E-value=0.14  Score=43.77  Aligned_cols=69  Identities=20%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhH----hhcCCcc-----cC----HHHHhcccCEEEEcCCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA----DKRGAEH-----TN----IDDLCKQSDFIIITSAL  106 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a----~~~g~~~-----~s----l~ell~~aDvVil~lPl  106 (274)
                      +.|+|.|+| .|.||+.+++.|.+.|.++++..++......    ...+++.     .+    ++.++..+|.+++..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            468999999 5999999999999999988887765544331    1123321     11    44577889998887765


Q ss_pred             Ccc
Q psy3240         107 TPD  109 (274)
Q Consensus       107 t~~  109 (274)
                      ...
T Consensus        82 ~~~   84 (350)
T d1xgka_          82 QAG   84 (350)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.30  E-value=0.029  Score=42.19  Aligned_cols=34  Identities=18%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+++.|||.|.||-.+|..+..+|+++.+..+..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999877776543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.29  E-value=0.061  Score=42.18  Aligned_cols=64  Identities=23%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEe-CCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYT-SRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~-~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lPl  106 (274)
                      +||.|.| .|.||+.+++.|...|.++.+.+ .|..... ....+++.        .++.++++.+|.|+.+...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            6899999 69999999999998886433332 2322221 22222221        1456678899999877654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.25  E-value=0.07  Score=44.98  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +|+||++.|-|. +-||+++|+.|...|+++++.+++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            699999999996 5799999999999999877776543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.09  E-value=0.04  Score=41.72  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=30.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+++.|||.|.||-.+|..++.+|.++.+.....
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999877776544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.09  E-value=0.037  Score=42.03  Aligned_cols=63  Identities=14%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             EEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhc-ccCEEEEcCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCK-QSDFIIITSAL  106 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~-~aDvVil~lPl  106 (274)
                      +|.|+|+|++|+++++.+. .-+++.+++.+..+... ..-.|+...   .++++.+ ..++.++++|.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~   73 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR   73 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCH
Confidence            7999999999999999775 45777666544433332 222344332   4555443 46777777774

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.07  E-value=0.29  Score=40.82  Aligned_cols=96  Identities=14%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCC-----CCC----hh-----HhhcCC--cccCHHHHhcccC
Q psy3240          36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSR-----SKK----PE-----ADKRGA--EHTNIDDLCKQSD   98 (274)
Q Consensus        36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r-----~~~----~~-----a~~~g~--~~~sl~ell~~aD   98 (274)
                      .|+.|+..+|.|+|.|.-|..+|+.+...+.+.+. +|+.     .+.    ..     ......  ...++.+++..++
T Consensus        20 ~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~   99 (222)
T d1vl6a1          20 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD   99 (222)
T ss_dssp             HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred             hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcc
Confidence            35789999999999999999999999888876544 4432     110    00     111111  1237888888888


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL  136 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i  136 (274)
                      ++...-     +.+++.++.+..|.+..++.=.|.-..
T Consensus       100 ~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~  132 (222)
T d1vl6a1         100 FFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVP  132 (222)
T ss_dssp             EEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             eecccc-----ccccccHHHHhhcCCCCEEEecCCCcc
Confidence            766633     456777788888888888888886544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.095  Score=43.67  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            589999999985 679999999999999987777654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.095  Score=43.64  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ..|+||++.|.|. +.||+++|+.|...|+++++.+++
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            3689999999985 689999999999999987777654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.98  E-value=0.11  Score=42.74  Aligned_cols=68  Identities=25%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh---------HhhcCCcc--------cCHHHHhcccCEEEEc
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---------ADKRGAEH--------TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---------a~~~g~~~--------~sl~ell~~aDvVil~  103 (274)
                      -+||.|.| .|.||+.+++.|...|.++++..++.....         ....+++.        .++.+.++.++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            46799999 599999999999999998777765443211         11233321        1355678889999988


Q ss_pred             CCCCcc
Q psy3240         104 SALTPD  109 (274)
Q Consensus       104 lPlt~~  109 (274)
                      .+....
T Consensus        83 ~~~~~~   88 (312)
T d1qyda_          83 LAGGVL   88 (312)
T ss_dssp             CCCSSS
T ss_pred             hhhccc
Confidence            775433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.095  Score=45.44  Aligned_cols=33  Identities=21%  Similarity=0.151  Sum_probs=26.9

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |+|.|.| .|-||+.+++.|...|.++++.+++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5667888 79999999999999999887777643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.94  E-value=0.063  Score=44.72  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .|+||++.|.|.+ .||+++|+.|...|+++++.+++.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3899999999975 599999999999999877766543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.91  E-value=0.071  Score=44.90  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .+|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999996 569999999999999987776654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.90  E-value=0.039  Score=45.26  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ..|+|.|||.|..|-..|..|+..|.++++++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999888887543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.89  E-value=0.039  Score=43.19  Aligned_cols=87  Identities=16%  Similarity=0.294  Sum_probs=50.9

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCC--eEEEE-eCCCCChhHhhcCC---c-ccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKV--SKFLY-TSRSKKPEADKRGA---E-HTNIDDLCKQSDFIIITSALTPDTHHL  113 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~-~~r~~~~~a~~~g~---~-~~sl~ell~~aDvVil~lPlt~~T~~l  113 (274)
                      |-+|||||. |-.|+.+.+.|....+  ..+.+ ..+...........   . ....++...++|++++++|.... ...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s-~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch-hhH
Confidence            458999996 9999999999975532  22322 22211111001111   1 12445667889999999985322 222


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q psy3240         114 INRARLESMKPGAILINTSR  133 (274)
Q Consensus       114 i~~~~l~~mk~gailINv~R  133 (274)
                          .....++|..+||.|.
T Consensus        80 ----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ----HHHHHHTTCEEEECSS
T ss_pred             ----HhhhccccceehhcCh
Confidence                1223457899999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.84  E-value=0.074  Score=44.72  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +.|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3589999999996 569999999999999987777653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.84  E-value=0.054  Score=45.61  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeC
Q psy3240          38 PALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        38 ~~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      .+|+||++.|-|.+   -||+++|+.|...|+++++.++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            68999999999986   5999999999999998776654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.051  Score=43.55  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHH-----Hh--cccCEEEEcCCCCc
Q psy3240          39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDD-----LC--KQSDFIIITSALTP  108 (274)
Q Consensus        39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~e-----ll--~~aDvVil~lPlt~  108 (274)
                      ...+.+|.|.| .|.+|....+.++.+|+++++..++..+.+ .++.|+..+ +.++     .+  ...|.++-++-.  
T Consensus        29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg--  106 (177)
T d1o89a2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGD--  106 (177)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCH--
T ss_pred             CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcch--
Confidence            34556788776 599999999999999998888777666655 666676532 2111     11  224777665531  


Q ss_pred             ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240         109 DTHHLINRARLESMKPGAILINTSR  133 (274)
Q Consensus       109 ~T~~li~~~~l~~mk~gailINv~R  133 (274)
                      .    .-.+.++.|+++..+|+++.
T Consensus       107 ~----~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         107 K----VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             H----HHHHHHHTEEEEEEEEECCC
T ss_pred             H----HHHHHHHHhccccceEeecc
Confidence            1    23467788888888888865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.73  E-value=0.066  Score=46.26  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +.|+|.|||.|.-|-.+|..|+..|.+++++..+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            468999999999999999999999998888887664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.69  E-value=0.11  Score=43.62  Aligned_cols=40  Identities=15%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      ...|+||++.|-| .+.||+++|+.|...|+++++.+.+..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            3569999999999 589999999999999998777776543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.68  E-value=0.16  Score=42.21  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +.|+||++.|-|. +.||+++|+.|...|+++++.+++.
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3589999999996 5799999999999999877776544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.65  E-value=0.064  Score=43.44  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ..+||.|||.|..|..+|..|+..|.++++++...
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46799999999999999999999999888887543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.64  E-value=0.065  Score=39.91  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ++++.|||.|.+|-.+|..|+.+|.++.++...
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecc
Confidence            478999999999999999999999987777643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.026  Score=47.05  Aligned_cols=37  Identities=30%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCCC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r~   75 (274)
                      .|++++|.|||+|.+|..+|+.|...|...+. +|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            49999999999999999999999999986554 44433

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.53  E-value=0.055  Score=39.86  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .+++.|||.|.+|-.+|..|+.+|.++.++...
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            379999999999999999999999987776544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.52  E-value=0.064  Score=44.40  Aligned_cols=35  Identities=11%  Similarity=0.067  Sum_probs=30.0

Q ss_pred             CCCCEEEEEcc-Ch--HHHHHHHHHccCCCeEEEEeCC
Q psy3240          40 LQNSTVGIVGC-GR--IGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        40 L~gktVGIIGl-G~--IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      |+||++.|.|. |.  ||.++|+.|...|+++++.+++
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            89999999996 65  9999999999999977665543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.45  E-value=0.1  Score=43.63  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            489999999996 679999999999999987776654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.44  E-value=0.081  Score=40.13  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+++|.|||-|.+|-.+|..|+..|.++.++....
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            46899999999999999999999999877776543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.38  E-value=0.11  Score=43.40  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            799999999996 579999999999999987777654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.14  Score=42.80  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc--ccHHhc
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP--DTHHLI  114 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~--~T~~li  114 (274)
                      ..|+||++.|.|. +.||+++|+.|...|+++++.+++..+.+..     ...+.+.-....++.+.+-.+.  +.+.++
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~-----~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v   80 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL-----AAECKSAGYPGTLIPYRCDLSNEEDILSMF   80 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----HHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----HHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence            3499999999986 7899999999999999877776442211100     0012221123456666665543  344555


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q psy3240         115 NRARLESMKPGAILINTS  132 (274)
Q Consensus       115 ~~~~l~~mk~gailINv~  132 (274)
                      +. ..+...+=-++||.+
T Consensus        81 ~~-~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          81 SA-IRSQHSGVDICINNA   97 (257)
T ss_dssp             HH-HHHHHCCCSEEEECC
T ss_pred             HH-HHHhcCCCCEEEecc
Confidence            42 333333223666765

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.33  E-value=0.065  Score=44.60  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCCh
Q psy3240          38 PALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKP   78 (274)
Q Consensus        38 ~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~   78 (274)
                      +.|+||++.|-|.+ .||+++|+.|...|+++++.+++....
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            46999999999975 699999999999999887777655443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.86  E-value=0.069  Score=42.58  Aligned_cols=32  Identities=31%  Similarity=0.383  Sum_probs=28.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ++|.|||.|.-|-..|..|+..|.+++++...
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            47999999999999999999999988888654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.86  E-value=0.14  Score=41.59  Aligned_cols=39  Identities=23%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +.-.+++|.|||.|..|-..|..|+..|++++++.....
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            456899999999999999999999999998888865443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.095  Score=41.98  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +.++|.|||.|.-|-..|..|+..|.+++++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45789999999999999999999999888876543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.14  Score=41.59  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc-----c---cCHHHHhcccCEEEEcCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE-----H---TNIDDLCKQSDFIIITSAL  106 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~-----~---~sl~ell~~aDvVil~lPl  106 (274)
                      ..+|+|.|.| .|.||+.+++.|...|.  ++++..++..... .....+.     .   .++.+.++.+|+++.++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            5788999998 69999999999977664  5667766544322 1111111     1   1455677889999988754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.78  E-value=0.22  Score=40.24  Aligned_cols=66  Identities=23%  Similarity=0.309  Sum_probs=45.2

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCcc--------cCHHHHhcccCEEEE
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAEH--------TNIDDLCKQSDFIII  102 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~~--------~sl~ell~~aDvVil  102 (274)
                      -|||.|.|. |.||+.+++.|...|.++++.++......          ....++..        .+..+.++.+|.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            578999995 99999999999999998887775544321          01123321        134466788888887


Q ss_pred             cCCCC
Q psy3240         103 TSALT  107 (274)
Q Consensus       103 ~lPlt  107 (274)
                      +....
T Consensus        83 ~~~~~   87 (307)
T d1qyca_          83 TVGSL   87 (307)
T ss_dssp             CCCGG
T ss_pred             ccccc
Confidence            76543

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.36  Score=38.29  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVil~  103 (274)
                      .+.|.+|++||=|  ++..+++..+..||++..+..+..-.+.          ....|..   ..+++++++.+|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999954  7999999999999997666655332111          1223333   23899999999999875


Q ss_pred             CCCCcc-------c-------HHhccHHHHhcCCCCcEEEEcC
Q psy3240         104 SALTPD-------T-------HHLINRARLESMKPGAILINTS  132 (274)
Q Consensus       104 lPlt~~-------T-------~~li~~~~l~~mk~gailINv~  132 (274)
                      .=....       .       ...++...+...++.++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            432110       0       1122444556678999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.65  E-value=0.14  Score=42.49  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            589999999996 569999999999999987777654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.60  E-value=0.24  Score=42.34  Aligned_cols=65  Identities=17%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-----cc---CHHHHhcccCEEEEcCC
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-----HT---NIDDLCKQSDFIIITSA  105 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-----~~---sl~ell~~aDvVil~lP  105 (274)
                      ++++|.|.| .|-||+.+++.|...|.++++.+.+..... .......     ..   .+.++++.+|.|+-+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence            788999998 799999999999999998888876544322 1111111     11   34456778998876553

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.60  E-value=0.15  Score=43.02  Aligned_cols=36  Identities=14%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            589999999985 799999999999999987777654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.57  E-value=0.12  Score=43.12  Aligned_cols=36  Identities=19%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            489999999986 789999999999999987777654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.45  E-value=0.12  Score=40.93  Aligned_cols=97  Identities=19%  Similarity=0.290  Sum_probs=56.6

Q ss_pred             CEEEEEc-cChHHHHHHHHHccC-CCeEEEEe--CCCC---ChhHh----hcCC---cc---cCHHHHhcccCEEEEcCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPY-KVSKFLYT--SRSK---KPEAD----KRGA---EH---TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~--~r~~---~~~a~----~~g~---~~---~sl~ell~~aDvVil~lP  105 (274)
                      .+|+||| .|-.|+.+.+.|... .+++....  ....   +....    -.+.   ..   .+.++....+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 699999999999875 44433222  2111   11111    0111   11   134455678999999999


Q ss_pred             CCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240         106 LTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       106 lt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~  144 (274)
                      .....+ + -..   ..+.+..+||.|..--.+.....+
T Consensus        82 ~~~s~~-~-~~~---~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          82 HEVSHD-L-APQ---FLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             HHHHHH-H-HHH---HHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             chhHHH-H-hhh---hhhcCceeeccccccccccccccc
Confidence            532211 1 112   235789999998766555444444

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.42  E-value=0.097  Score=38.08  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+.+||+|+|||.|+-|..+|.-|...+.+++....+.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            57899999999999999999999988776555544443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.41  E-value=0.11  Score=43.85  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ++|+||++.|-|. +.||+++|+.|...|+++++.+++.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5899999999985 7899999999999999877766543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.29  E-value=0.24  Score=41.42  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc--ccHHhccH
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP--DTHHLINR  116 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~--~T~~li~~  116 (274)
                      |+||++.|-|. +-||+++|+.|...|+++++.+++..+.+..     ...+.+.-....++.+.+-.+.  +.+.+++.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~-----~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~   76 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEAS-----KAAVLETAPDAEVLTTVADVSDEAQVEAYVTA   76 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----HHHHHHHCTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----HHHHHhhCCCCeEEEEeccCCCHHHHHHHHHH
Confidence            78999999986 5799999999999999877766543221110     0122233334566666665543  34445532


Q ss_pred             HHHhcCCCCcEEEEc
Q psy3240         117 ARLESMKPGAILINT  131 (274)
Q Consensus       117 ~~l~~mk~gailINv  131 (274)
                       ..+.+.+=-+|||.
T Consensus        77 -~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          77 -TTERFGRIDGFFNN   90 (258)
T ss_dssp             -HHHHHSCCSEEEEC
T ss_pred             -HHHHhCCCCEEEEC
Confidence             22333333366664

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.11  Score=43.21  Aligned_cols=36  Identities=8%  Similarity=0.032  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |+||++.|.|. +.||+++|+.|...|+++++.+++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            99999999985 8999999999999999888777553

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.20  E-value=0.39  Score=39.23  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=43.5

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHcc--------------------CCCeEEE-EeCCCCChhHhhcCCcccCHHHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIP--------------------YKVSKFL-YTSRSKKPEADKRGAEHTNIDDLCKQ   96 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~--------------------~G~~vv~-~~~r~~~~~a~~~g~~~~sl~ell~~   96 (274)
                      .++.|++|.|||-|+.+.-+|+.|..                    .|++.|. +.+|.. .   +.-+...++.|+...
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~-~---~~~ft~~Elre~~~~  110 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP-L---QVAFTIKELREMIQL  110 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG-G---GCCCCHHHHHHHHTC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh-H---hCCCCchhhhccccc
Confidence            57889999999999999999998876                    5775544 444432 1   122233356777777


Q ss_pred             cCEEEEcCC
Q psy3240          97 SDFIIITSA  105 (274)
Q Consensus        97 aDvVil~lP  105 (274)
                      .++-+..-|
T Consensus       111 ~~~~~~~~~  119 (225)
T d1cjca1         111 PGTRPMLDP  119 (225)
T ss_dssp             TTEEEECCG
T ss_pred             CCCcceech
Confidence            777665433

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.11  E-value=0.16  Score=43.76  Aligned_cols=37  Identities=11%  Similarity=0.086  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ..|+||++.|-|. +-||+++|+.|...|+++++.+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~   40 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLG   40 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4699999999986 579999999999999976666543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.83  E-value=0.3  Score=37.43  Aligned_cols=31  Identities=16%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             EEEEEc-cChHHHHHHHHHc-cCCCeEEEEeCC
Q psy3240          44 TVGIVG-CGRIGLSVLEKLI-PYKVSKFLYTSR   74 (274)
Q Consensus        44 tVGIIG-lG~IG~~iA~~L~-~~G~~vv~~~~r   74 (274)
                      ||+|+| .|+||+.+++.+. .-+++.+...++
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 6999999999875 466765554443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.50  E-value=0.35  Score=40.15  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=32.0

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |+||++.|-| -+.||+++|+.|...|+++++.+++..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            8999999998 578999999999999998777776543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.38  E-value=0.14  Score=42.76  Aligned_cols=39  Identities=18%  Similarity=0.095  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +.|.||++.|.|. +.||+++|+.|...|+++++.+++..
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~   41 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS   41 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh
Confidence            4699999999986 56999999999999998776565544

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.37  E-value=0.13  Score=41.88  Aligned_cols=58  Identities=14%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhc--ccCEEEEcCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCK--QSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~--~aDvVil~lPl  106 (274)
                      ++|.|.|. |-||+.+++.|+..|.+++..+++.....      ...+++++++  ..|+|+-+.-.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~------d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT------NVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT------CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC------CHHHHHHHHHHcCCCEEEeeccc
Confidence            57999996 99999999999999997666654322110      1124556665  45887765544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.084  Score=45.44  Aligned_cols=88  Identities=16%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHh---cccCEEEEcCCCCc--ccHH
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLC---KQSDFIIITSALTP--DTHH  112 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell---~~aDvVil~lPlt~--~T~~  112 (274)
                      .|+||++.|-|. +.||+++|+.|...|+++++.+++..+.....     .++.+.+   ....++.+.+-.+.  +.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~-----~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~   83 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA-----DELQANLPPTKQARVIPIQCNIRNEEEVNN   83 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----HHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence            499999999996 67999999999999998777765433222100     0111111   23466666665543  3445


Q ss_pred             hccHHHHhcCCCCcEEEEcC
Q psy3240         113 LINRARLESMKPGAILINTS  132 (274)
Q Consensus       113 li~~~~l~~mk~gailINv~  132 (274)
                      +++. ..+...+=-++||.+
T Consensus        84 ~~~~-~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          84 LVKS-TLDTFGKINFLVNNG  102 (297)
T ss_dssp             HHHH-HHHHHSCCCEEEECC
T ss_pred             HHHH-HHHHhCCeEEEEeec
Confidence            5542 333334444677765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.07  E-value=0.12  Score=39.54  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             EEEEEccChHHHHHHHHHccCCC-eEEEEeCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRS   75 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~   75 (274)
                      +|.|||.|.-|-+.|..|+..|. +++++..+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999997 477776543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.74  E-value=0.14  Score=40.95  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP   78 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~   78 (274)
                      .||||=|+|+||+.+.|.+...+.+++...+.....
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~   36 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIAL   36 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCH
Confidence            379999999999999999987788777776654443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.71  E-value=0.19  Score=41.28  Aligned_cols=63  Identities=14%  Similarity=0.285  Sum_probs=42.8

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--c----CHH---HHhcccCEEEEcC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--T----NID---DLCKQSDFIIITS  104 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--~----sl~---ell~~aDvVil~l  104 (274)
                      |+||++.|-|. +-||+++|+.|...|+++++.+++...  ..+.+...  +    ..+   +-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~--l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL--LKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 679999999999999987777654221  22223221  1    222   3445678888765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.69  E-value=0.3  Score=40.59  Aligned_cols=37  Identities=14%  Similarity=0.081  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ..|.||++.|.|. +.||+++|+.|...|+++++.+++
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            4689999999986 689999999999999987777653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.54  E-value=0.22  Score=42.23  Aligned_cols=37  Identities=19%  Similarity=0.038  Sum_probs=32.2

Q ss_pred             CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .+||+|.|.| .|-||+.+++.|...|.++++.+++..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999999 699999999999999998887876554

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.53  E-value=0.77  Score=37.13  Aligned_cols=91  Identities=14%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             HHHHHHccCCCeEEEEeCCCCCh-----h-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE
Q psy3240          56 SVLEKLIPYKVSKFLYTSRSKKP-----E-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL  128 (274)
Q Consensus        56 ~iA~~L~~~G~~vv~~~~r~~~~-----~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gail  128 (274)
                      ..+++|.+.|++ +.+-......     . ..+.|+... +.+++. ++|+|+..-|.++        +.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~-V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~l   90 (193)
T d1pjca2          21 SSVRTLVEAGHT-VFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLL   90 (193)
T ss_dssp             HHHHHHHTTTCE-EEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEE
T ss_pred             HHHHHHHHCCCE-EEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceE
Confidence            457788889995 4444333322     1 445677766 556666 5899887665443        347889999999


Q ss_pred             EEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240         129 INTSRGQLVDQEALIDFIADIRVISISMVT  158 (274)
Q Consensus       129 INv~RG~iVde~aL~~~L~~~~i~~~D~~~  158 (274)
                      |-.-.  +.....+++.|.++++..+++..
T Consensus        91 i~~l~--p~~~~ell~~l~~~~it~~s~E~  118 (193)
T d1pjca2          91 FTYLH--LAAARELTEQLMRVGLTAIAYET  118 (193)
T ss_dssp             EECCC--GGGCHHHHHHHHHHTCEEEEGGG
T ss_pred             EEecC--cccchHHHHHHHHcCCEEEEeee
Confidence            88754  34456889999999998887665

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.23  Score=41.41  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +.||+++|+.|...|+++++.+++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            699999999986 679999999999999987777643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.36  E-value=0.25  Score=39.13  Aligned_cols=65  Identities=15%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             CCEEEEEccChHHHHHH--HHHc---cCC-CeEEEEeCCCCChh--H-------hhcCCc-----ccCHHHHhcccCEEE
Q psy3240          42 NSTVGIVGCGRIGLSVL--EKLI---PYK-VSKFLYTSRSKKPE--A-------DKRGAE-----HTNIDDLCKQSDFII  101 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA--~~L~---~~G-~~vv~~~~r~~~~~--a-------~~~g~~-----~~sl~ell~~aDvVi  101 (274)
                      .-||.|||.|..|...+  ..++   .+. -+.+.+|....+.+  +       ...+..     ..+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999998876522  3332   232 24566665443322  1       111221     137889999999999


Q ss_pred             EcCCC
Q psy3240         102 ITSAL  106 (274)
Q Consensus       102 l~lPl  106 (274)
                      ++.-.
T Consensus        83 itag~   87 (167)
T d1u8xx1          83 AHIRV   87 (167)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            98743

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.33  E-value=0.18  Score=42.93  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~   75 (274)
                      |+|+|||.|.-|-.+|..|+..|  .+++++..+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999886544  5677776654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.13  E-value=0.2  Score=41.87  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      .|+||++.|-|. +-||+++|+.|...|+++++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~   38 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            489999999985 57999999999999997666654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.12  E-value=0.19  Score=42.19  Aligned_cols=38  Identities=21%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .|+||++.|.|. +.||+++|+.|...|+++++.+++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999986 67999999999999998777775543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.07  E-value=0.58  Score=37.83  Aligned_cols=64  Identities=16%  Similarity=0.327  Sum_probs=42.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHc--------------------cCCCeEEE-EeCCCCChhHhhcCCcccCHHHHhcc
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLI--------------------PYKVSKFL-YTSRSKKPEADKRGAEHTNIDDLCKQ   96 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~--------------------~~G~~vv~-~~~r~~~~~a~~~g~~~~sl~ell~~   96 (274)
                      .++.|++|.|||-|+.+.-+|+.|.                    ..|++.|. +.+|....    ..+....+.|+.+-
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~----~~ft~~Elre~~~l  110 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQ----AAFTTLELRELADL  110 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGG----CCCCHHHHHHGGGC
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHh----CCCChhhhhhhccc
Confidence            5788999999999999999999875                    57776544 44444321    22233356677766


Q ss_pred             cCEEEEcCC
Q psy3240          97 SDFIIITSA  105 (274)
Q Consensus        97 aDvVil~lP  105 (274)
                      .++-...-|
T Consensus       111 ~~~~~~~~~  119 (216)
T d1lqta1         111 DGVDVVIDP  119 (216)
T ss_dssp             TTEEEECCG
T ss_pred             CCCCccCCH
Confidence            666655433

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=89.05  E-value=0.2  Score=42.85  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----hc----------CC-cccCHHHHhcccCEEEE
Q psy3240          41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----KR----------GA-EHTNIDDLCKQSDFIII  102 (274)
Q Consensus        41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----~~----------g~-~~~sl~ell~~aDvVil  102 (274)
                      .||+|.|.| .|-||+.+++.|...|.++++..++..+.. ..     ..          .+ ...++++++..+|.|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            599999998 599999999999999998776554332211 00     00          11 11256678899998876


Q ss_pred             cCCC
Q psy3240         103 TSAL  106 (274)
Q Consensus       103 ~lPl  106 (274)
                      +.-.
T Consensus        90 ~a~~   93 (342)
T d1y1pa1          90 IASV   93 (342)
T ss_dssp             CCCC
T ss_pred             hccc
Confidence            5543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.88  E-value=0.14  Score=39.71  Aligned_cols=63  Identities=19%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCChhHh-------hcCC------c-ccCHHHHhcccCEE
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKKPEAD-------KRGA------E-HTNIDDLCKQSDFI  100 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~~~a~-------~~g~------~-~~sl~ell~~aDvV  100 (274)
                      .+|.|||. |.+|+.+|-.|...++       ..+.++.+.....+.       ....      . ..+..+.++.||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            38999995 9999999998864222       234455433222111       1111      1 12678899999999


Q ss_pred             EEcCC
Q psy3240         101 IITSA  105 (274)
Q Consensus       101 il~lP  105 (274)
                      +++.-
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99774

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=88.87  E-value=0.19  Score=40.06  Aligned_cols=33  Identities=36%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+|||=|+|+||+.+.|.|..-+.+++..++..
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~   33 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT   33 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc
Confidence            479999999999999999887788777777654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.75  E-value=0.22  Score=39.43  Aligned_cols=38  Identities=18%  Similarity=0.446  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .+++||+|.|||.|.-|..+|..+...+.+++....+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            47899999999999999999999988787665555443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.64  E-value=0.18  Score=42.03  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |+||++.|-|. +.||+++|+.|...|+++++.+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999999986 5699999999999999776666543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.7  Score=38.15  Aligned_cols=36  Identities=17%  Similarity=0.130  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +.||++.|-|. +-||+++|+.|...|+++++.+++.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999986 6799999999999999877776543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.46  E-value=0.48  Score=39.23  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      .|+||++.|-|. +-||+++|+.|...|+++++.+++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            489999999985 679999999999999987777654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.40  E-value=0.18  Score=35.08  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRG   84 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g   84 (274)
                      -.|.+|.|.|. |.+|....+.++.+|+++++...+.++.+ .++.|
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            36788999875 99999999999999998777776655544 44433

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.20  E-value=0.21  Score=38.13  Aligned_cols=28  Identities=32%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeE
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSK   68 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~v   68 (274)
                      ++++|.|||-|.+|-.+|..|+.+|.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v   29 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEG   29 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCce
Confidence            4789999999999999999999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.09  E-value=1.1  Score=35.51  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHcc---CCC----eEEEEeCCCCChhHh------hcCC-------c-ccCHHHHhcccCE
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIP---YKV----SKFLYTSRSKKPEAD------KRGA-------E-HTNIDDLCKQSDF   99 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~---~G~----~vv~~~~r~~~~~a~------~~g~-------~-~~sl~ell~~aDv   99 (274)
                      -.+|.|+|. |.||+.++-+|..   ||.    ....++.........      ....       . ..+..+.++.+|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            347999996 9999999998864   453    223344332221111      1111       1 1378899999999


Q ss_pred             EEEcCCCCc---ccHH-hc--cH-------HHHhc-CCCCcEEEEcCCCchhcHHHHHh
Q psy3240         100 IIITSALTP---DTHH-LI--NR-------ARLES-MKPGAILINTSRGQLVDQEALID  144 (274)
Q Consensus       100 Vil~lPlt~---~T~~-li--~~-------~~l~~-mk~gailINv~RG~iVde~aL~~  144 (274)
                      |++..-...   .++. ++  |.       +.+.+ .+++++++=++  .++|.-+.+.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            999873321   1211 21  11       22333 46678777675  4688887754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.83  E-value=0.24  Score=37.89  Aligned_cols=31  Identities=13%  Similarity=0.012  Sum_probs=28.1

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |.|||.|..|...|..|...|.+|+++..+.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999888887654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.52  Score=40.69  Aligned_cols=96  Identities=18%  Similarity=0.304  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcc---ChHHHHHHHHHccCC-CeEEEEeCCCCC--hh----HhhcCCcc---cCHHHHhcccCEEEEcCC
Q psy3240          39 ALQNSTVGIVGC---GRIGLSVLEKLIPYK-VSKFLYTSRSKK--PE----ADKRGAEH---TNIDDLCKQSDFIIITSA  105 (274)
Q Consensus        39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G-~~vv~~~~r~~~--~~----a~~~g~~~---~sl~ell~~aDvVil~lP  105 (274)
                      .+.|++|+++|-   +++..+.+..+..+| +.+.+..+..-.  ..    +.+.+...   .+++++++.+|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            599999999996   788999999999886 555555443221  11    22334332   389999999999986322


Q ss_pred             CCcc----------cHHhccHHHHhcCCCCcEEEEcC-CC
Q psy3240         106 LTPD----------THHLINRARLESMKPGAILINTS-RG  134 (274)
Q Consensus       106 lt~~----------T~~li~~~~l~~mk~gailINv~-RG  134 (274)
                      ..+.          ....++.+.++.++++++|.-+. ||
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg  270 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRV  270 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCC
Confidence            2111          01124666777788888887654 44

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.77  E-value=0.34  Score=36.80  Aligned_cols=41  Identities=20%  Similarity=0.062  Sum_probs=34.2

Q ss_pred             CCCCCCCCCEEEEE--ccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          35 MCGPALQNSTVGIV--GCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        35 ~~g~~L~gktVGII--GlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +.++..-++.+.|+  |-|.||-.+|..|..+|+++.++.+..
T Consensus        32 l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          32 MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             HHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            34566778888887  889999999999999999888877654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.70  E-value=0.43  Score=37.61  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=38.2

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhhcCCcccCHHH----HhcccCEEEEcCCCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADKRGAEHTNIDD----LCKQSDFIIITSALT  107 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~~g~~~~sl~e----ll~~aDvVil~lPlt  107 (274)
                      |+|.|.|. |.||+.+++.|.+.|.  +++...++.. ...........++.+    +...+|.|+.|+-.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~-~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL-AEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC-CCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch-hhcccccccccchhhhhhccccchheeeeeeeee
Confidence            89999996 9999999999988886  3333332221 111111111224333    334479999887443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.50  E-value=0.41  Score=39.07  Aligned_cols=36  Identities=11%  Similarity=0.067  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      +||+|.|.|. |.||+++|+.|...|+++++.+....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5899999996 77999999999999998777765443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.44  Score=40.12  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=40.5

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh-cCC---cc--c-CHHHHhcccCEEEEcC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK-RGA---EH--T-NIDDLCKQSDFIIITS  104 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~-~g~---~~--~-sl~ell~~aDvVil~l  104 (274)
                      |+|.|.| .|-||+.+++.|...|.++++.++......  ... ...   ..  . .++.++.++|+|+-+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlA   73 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLA   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECc
Confidence            7899998 599999999999999998888775333221  111 111   11  1 2445567899886443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.23  E-value=0.17  Score=41.72  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +|.|||.|..|..+|..|+..|.++++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999888887654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.94  E-value=0.38  Score=40.11  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      .|+||++.|.|. +-||+++|+.|...|+++++.+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999985 6799999999999999877777543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.88  E-value=0.36  Score=38.64  Aligned_cols=34  Identities=29%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSK   76 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~   76 (274)
                      .+|.|||.|.-|..+|..|+..|. .++++..+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            379999999999999999999996 6667776543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.54  E-value=0.54  Score=38.88  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             CEEEEE-cc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          43 STVGIV-GC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        43 ktVGII-Gl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      |||.+| |. +.||+++|+.|...|+++++.+++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            566555 65 679999999999999987776654

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.36  E-value=1.3  Score=37.92  Aligned_cols=93  Identities=12%  Similarity=-0.074  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCcc-----------cCHHHHhcccCEEEEc
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAEH-----------TNIDDLCKQSDFIIIT  103 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~~-----------~sl~ell~~aDvVil~  103 (274)
                      -|.|-+|.=++-+.-|-..++.|..+|++||-+.+......    ....|-+.           .-+.+++++||||+-.
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            48899999999998899999999999999888876543222    11122211           1356789999999987


Q ss_pred             CCCCcccHHhccHHHHhcCCCCcEEEEc
Q psy3240         104 SALTPDTHHLINRARLESMKPGAILINT  131 (274)
Q Consensus       104 lPlt~~T~~li~~~~l~~mk~gailINv  131 (274)
                      .+...-.+-=++.+.+...+|..|.+.+
T Consensus        83 ~~pg~~~~lgl~~~~l~~~nP~lI~~si  110 (359)
T d1x74a1          83 YRPGVTERLGLGPEECAKVNDRLIYARM  110 (359)
T ss_dssp             SCTTHHHHHTCSHHHHHHHCTTCEEEEE
T ss_pred             CCCCchhhcCCCHHHHHhhcCCceEEEE
Confidence            7654444444688999999999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.13  E-value=0.39  Score=34.90  Aligned_cols=34  Identities=15%  Similarity=-0.034  Sum_probs=26.6

Q ss_pred             CCEEEEEccChHHHHHHHHHc---cCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLI---PYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~---~~G~~vv~~~~r~   75 (274)
                      .+++.|||.|.+|-.+|..+.   ..|.++.++....
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999998654   4588776666443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=86.12  E-value=0.31  Score=39.62  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |.|||.|.+|.++|..|...|.++++.+...
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999888887643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=86.11  E-value=1  Score=37.12  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             EEEEEc-cChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          44 TVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        44 tVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      ||.|.| .|-||+.+++.|...|.+++++++..
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~   34 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLS   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            677886 69999999999998999888877543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.90  E-value=0.22  Score=38.86  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      +++.|.|||-|..|...|..+..+|+++++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            4678999999999999999999999988887643

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.76  E-value=0.41  Score=38.22  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC---CCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY---KVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~---G~~vv~~~~r~   75 (274)
                      .+|||=|+|+||+.+.|.+...   ..+++...+..
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~   36 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC
Confidence            3799999999999999987643   35566666554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.76  E-value=0.53  Score=36.35  Aligned_cols=32  Identities=9%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEe
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYT   72 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~   72 (274)
                      .+++|.|||-|+.|...|..+..+|++.+...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            46679999999999999999999998755433

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.37  Score=40.72  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.3

Q ss_pred             EEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .|.|||.|..|..+|+.|+..|.+++++..+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999998888876654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=85.46  E-value=0.83  Score=37.52  Aligned_cols=71  Identities=13%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             CCCCCCEEEEEc-----------------cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-ccc-------CHHH
Q psy3240          38 PALQNSTVGIVG-----------------CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-EHT-------NIDD   92 (274)
Q Consensus        38 ~~L~gktVGIIG-----------------lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-~~~-------sl~e   92 (274)
                      ++|+|++|.|-+                 -|.||.++|+.+...|++|.++.............. ...       .+.+
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~   81 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNA   81 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHh
Confidence            467788877754                 589999999999999998877665433211111111 111       2334


Q ss_pred             HhcccCEEEEcCCCCc
Q psy3240          93 LCKQSDFIIITSALTP  108 (274)
Q Consensus        93 ll~~aDvVil~lPlt~  108 (274)
                      .+..+|+++.+....+
T Consensus        82 ~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          82 SVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             HGGGCSEEEECCBCCS
T ss_pred             hhccceeEeeeechhh
Confidence            5678998888766544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.01  E-value=0.42  Score=40.09  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |+||++.|-|. +-||+++|+.|...|+++++.+++.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            78999999986 6799999999999999877776543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=0.42  Score=39.05  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=28.1

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |.|||.|..|-..|..|+..|.+++++..+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999988887544

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.83  E-value=0.59  Score=37.17  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=26.0

Q ss_pred             CEEEEEccChHHHHHHHHHcc---CCCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP---YKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~---~G~~vv~~~~r~   75 (274)
                      .+|||=|+|+||+.+.|.+..   .+.+++..++..
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~   36 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT   36 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc
Confidence            379999999999999998763   357667776653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.72  E-value=0.49  Score=37.68  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             CEEEEEccChHHHHHHHHHc--cCCCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLI--PYKVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~--~~G~~vv~~~~r~   75 (274)
                      .+|+|||.|.-|-..|+.|+  .+|.++++|+...
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            48999999999999999885  4688777786543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.53  E-value=1.8  Score=36.07  Aligned_cols=85  Identities=16%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhcc--
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLIN--  115 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~--  115 (274)
                      ..+|++|++||+-    +..++++..|++..+++.++..      +.. ....++++.+||+|++.-    .  -++|  
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~------gd~p~~~~~~lLp~aD~viiTG----s--TlvN~T  182 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE------GDYPLPASEFILPECDYVYITC----A--SVVDKT  182 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT------TCEEGGGHHHHGGGCSEEEEET----H--HHHHTC
T ss_pred             ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC------CCCCchHHHHhhhcCCEEEEEe----c--hhhcCC
Confidence            4579999999874    4566677778877777765431      221 224678999999999933    2  2343  


Q ss_pred             -HHHHhcCCCCcEEEEcCCCchhcH
Q psy3240         116 -RARLESMKPGAILINTSRGQLVDQ  139 (274)
Q Consensus       116 -~~~l~~mk~gailINv~RG~iVde  139 (274)
                       ...|+..|+.+.+|=+|=....-.
T Consensus       183 l~~LL~~~~~a~~vvl~GPS~p~~P  207 (251)
T d2h1qa1         183 LPRLLELSRNARRITLVGPGTPLAP  207 (251)
T ss_dssp             HHHHHHHTTTSSEEEEESTTCCCCG
T ss_pred             HHHHHHhCCcCCEEEEECCCcccCH
Confidence             357777888877777665554443

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=84.43  E-value=1.9  Score=37.62  Aligned_cols=95  Identities=9%  Similarity=0.034  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-CChh--------------Hhhc--CCcc--c---------C
Q psy3240          38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-KKPE--------------ADKR--GAEH--T---------N   89 (274)
Q Consensus        38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-~~~~--------------a~~~--g~~~--~---------s   89 (274)
                      +-|.|-+|.=++-...|-..++.|..+|++||-+.+.. ....              ....  |-+.  .         -
T Consensus         2 ~PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   81 (427)
T d2vjma1           2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKEL   81 (427)
T ss_dssp             CTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            35899999988888888888999999999988887542 1110              0101  1111  1         2


Q ss_pred             HHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        90 l~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      +.+++++||||+-..+...--+-=++.+.++..+|.-|...++
T Consensus        82 ~~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          82 LEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            6678999999999876433333346889999999999998873

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=0.5  Score=37.16  Aligned_cols=30  Identities=17%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      |.|||.|..|...|..++.+|.+++++...
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999988888753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.36  E-value=0.49  Score=40.87  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeC
Q psy3240          42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      ||+|.|.| .|-||+.+++.|...|.+++++|+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            79999998 599999999999999998888873

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.29  E-value=0.48  Score=39.39  Aligned_cols=38  Identities=11%  Similarity=0.068  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      .|+||++.|-|. +.||+++|+.|...|+++++.+++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999985 79999999999999998777765543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.14  E-value=0.66  Score=34.52  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |+-.+||+|+|||-|..+-.-|..|..+.-++.+..++..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3456899999999999999999999999887766665543

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=1.3  Score=38.52  Aligned_cols=94  Identities=15%  Similarity=0.084  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---------HhhcCCccc--C---------HHHHhcccC
Q psy3240          39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---------ADKRGAEHT--N---------IDDLCKQSD   98 (274)
Q Consensus        39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---------a~~~g~~~~--s---------l~ell~~aD   98 (274)
                      -|.|-+|.=++-+.-|-..++.|..+|++||-+.+......         ....|.+..  +         +.+++++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            49999999999988898999999999999888876542111         112232221  2         567999999


Q ss_pred             EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240          99 FIIITSALTPDTHHLINRARLESMKPGAILINTS  132 (274)
Q Consensus        99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~  132 (274)
                      ||+-..+...--+-=++.+.|+.++|.-|.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998776443333346889999999999998873

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.93  E-value=0.47  Score=40.41  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      ....|.|||.|.-|-.+|..|+..|.++++++..+.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            455699999999999999999999998888876543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=83.69  E-value=0.48  Score=38.63  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |.|||.|.+|.++|..|...|.++++.+...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999888887643

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=83.67  E-value=0.84  Score=38.30  Aligned_cols=64  Identities=19%  Similarity=0.151  Sum_probs=40.5

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCC-CeEEEEeCCCCChh-H-hhcCCcc--------cCHH-HHhcccCEEEEcCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-A-DKRGAEH--------TNID-DLCKQSDFIIITSAL  106 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a-~~~g~~~--------~sl~-ell~~aDvVil~lPl  106 (274)
                      +||.|.| .|-||+.+++.|.+.| .++++.+....... . ...+++.        .++. .+.+.+|+|+-+.-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            4789998 5999999999998888 56666665443222 1 1111111        1223 367789998876544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.39  E-value=0.53  Score=36.77  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=26.3

Q ss_pred             CEEEEEccChHHHHHHHHHccC--CCeEEEEeCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSR   74 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r   74 (274)
                      +||.|||.|.+|-.+|..|+..  +.+++++.+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            5899999999999999999876  4566677654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=83.30  E-value=0.63  Score=36.95  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRS   75 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~   75 (274)
                      .+|||=|+|+||+.+.|.+... .++++..++..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            3799999999999999988765 46666666543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.22  E-value=0.47  Score=35.97  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=27.6

Q ss_pred             CCCCCCCEEEEEccChHHHHHHHHHccCCCe
Q psy3240          37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVS   67 (274)
Q Consensus        37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~   67 (274)
                      ++.-.|++|.|||.|.+|..+|..+...|++
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            3456789999999999999999999999984

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=82.98  E-value=2.7  Score=32.59  Aligned_cols=87  Identities=10%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             HHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcc-----------cHHhccHHHH
Q psy3240          53 IGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPD-----------THHLINRARL  119 (274)
Q Consensus        53 IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~-----------T~~li~~~~l  119 (274)
                      +.++.+..+..+|+++.+..+..-.+. ....++.. .++++.++.||+|..-.-....           ....+++. +
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~~~~~~~~~~~~~~~-l   99 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDR-Q   99 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHH-H
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeehhhhhcchhHHHHHHHhhhhhhhHH-H
Confidence            889999999999998777766554433 22334443 3899999999999873321111           11112333 4


Q ss_pred             hcCCCCcEEEEcC---CCchhcHH
Q psy3240         120 ESMKPGAILINTS---RGQLVDQE  140 (274)
Q Consensus       120 ~~mk~gailINv~---RG~iVde~  140 (274)
                      ..++++++|.-++   ||.=|+.+
T Consensus       100 ~~~~~dai~MHclPa~Rg~EIs~e  123 (161)
T d1js1x2         100 MAVTNNAYFMHCLPVRRNMIVTDD  123 (161)
T ss_dssp             HTTSSSCEEECCSCCCBTTTBCHH
T ss_pred             hhcCCceEEcCCCccccchhcchh
Confidence            4567899999886   66544443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.91  E-value=0.33  Score=38.08  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      +.++|.|||-|..|...|..+..+|+++++++...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45789999999999999999999999888886543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=82.59  E-value=0.59  Score=41.86  Aligned_cols=74  Identities=8%  Similarity=0.118  Sum_probs=55.2

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHH---h-cccCEEEEcCCCCcccHHhccH
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDL---C-KQSDFIIITSALTPDTHHLINR  116 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~el---l-~~aDvVil~lPlt~~T~~li~~  116 (274)
                      ..|.+.|.|.-|+.+++-|+..|.+++++.+...... ..-.|+...|.+++   . ..+++|++.++.....+..+.+
T Consensus        39 ~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  117 (395)
T d2py6a1          39 TRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQ  117 (395)
T ss_dssp             CEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHH
T ss_pred             ceEEEEcCchhHHHHHHHHHHCCceEEEEecCchhhcCceecceEeecHHHhhhhhhccCcEEEEEeccccchhhHHHH
Confidence            4699999999999999999999999888877655333 33346665565533   3 5688999988877777666644

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.46  E-value=1.2  Score=36.54  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      ||.+.|-|. +-||+++|+.|...|+++++.+++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            566666675 679999999999999987777654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.42  E-value=0.77  Score=34.42  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=24.9

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTS   73 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~   73 (274)
                      .||.|||-|.+|-.+|..|+. +.++.++++
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~   30 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDK   30 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEec
Confidence            489999999999999999976 566766654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.41  E-value=0.66  Score=36.45  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=28.9

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |.|||.|.-|...|..+...|.++++++.+..
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999886543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.37  E-value=0.83  Score=37.81  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=29.2

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |+|.|.| .|-||+.+++.|...|.++++.+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6899998 599999999999989998888776543

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=82.37  E-value=0.69  Score=36.80  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=24.3

Q ss_pred             CEEEEEccChHHHHHHHHHcc----CCCeEEEEeCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP----YKVSKFLYTSR   74 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~----~G~~vv~~~~r   74 (274)
                      .+|||=|+|+||+.+.|.+..    -..+++..++.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            479999999999999998753    24555666654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.22  E-value=0.54  Score=36.85  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS   75 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~   75 (274)
                      |.|||.|..|...|..+..+|.++++++.+.
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999988887654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=0.55  Score=39.07  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             CCCEEEEE--ccChHHHHHHHHHcc-CCCeEEEEeCCCC
Q psy3240          41 QNSTVGIV--GCGRIGLSVLEKLIP-YKVSKFLYTSRSK   76 (274)
Q Consensus        41 ~gktVGII--GlG~IG~~iA~~L~~-~G~~vv~~~~r~~   76 (274)
                      +||+|+||  |-+-||.++|+.|.. .|.++++++++..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999988  678999999999876 5887777765543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=0.69  Score=34.62  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=27.1

Q ss_pred             CCEEEEEccChHHHHHHHHH----ccCCCeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKL----IPYKVSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L----~~~G~~vv~~~~r~   75 (274)
                      ++++.|||-|.+|-.+|..|    +..|.++.+..+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            67999999999999999877    45788776665433

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=81.83  E-value=0.96  Score=35.84  Aligned_cols=36  Identities=28%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh
Q psy3240          43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP   78 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~   78 (274)
                      -+|||=|+|+||+.+.|.+.. -..+++...+.....
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~   38 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL   38 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCH
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccH
Confidence            379999999999999998764 356666666644443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.66  E-value=0.1  Score=41.41  Aligned_cols=24  Identities=29%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CEEEEEccChHHHHHHHHHccCCC
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKV   66 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~   66 (274)
                      ++|.|||.|-+|.++|..|+..|.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~   24 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYH   24 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC
Confidence            579999999999999999987775

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.66  E-value=0.77  Score=37.08  Aligned_cols=34  Identities=21%  Similarity=0.096  Sum_probs=26.5

Q ss_pred             CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |.|.|-| .+.||+++|+.|...|+++++.+.+..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            3455667 477999999999999998777776544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=0.67  Score=35.23  Aligned_cols=30  Identities=27%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSR   74 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r   74 (274)
                      |.|||-|..|-..|..+..+|+++++.+++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999988888754

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.27  E-value=0.95  Score=35.70  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=26.6

Q ss_pred             EEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCCh
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKP   78 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~   78 (274)
                      +|||=|+|+||+.+.|.+... ..+++...+.....
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~   37 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDL   37 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCH
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCCh
Confidence            799999999999999998754 56666666544433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=81.22  E-value=0.69  Score=36.88  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             EEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240          45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK   76 (274)
Q Consensus        45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~   76 (274)
                      |.|||.|..|...|..|...|.++++++....
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999998888876543

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=11  Score=29.55  Aligned_cols=98  Identities=19%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--------------HhhcCCccc--------CHHHHhc--cc
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--------------ADKRGAEHT--------NIDDLCK--QS   97 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--------------a~~~g~~~~--------sl~ell~--~a   97 (274)
                      .++|.++|-+..+..+.+.|...|.+++.+...+.+..              +...+....        ...+.+.  ..
T Consensus         3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (206)
T d1fmta2           3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQA   82 (206)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhhcc
Confidence            46899999999999999999888886654443322111              122233210        1223332  46


Q ss_pred             CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC-----CCchhcHHHHHh
Q psy3240          98 DFIIITSALTPDTHHLINRARLESMKPGAILINTS-----RGQLVDQEALID  144 (274)
Q Consensus        98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~-----RG~iVde~aL~~  144 (274)
                      |+++++-..     .++..+.++..+-|++=+--|     ||.---.-++..
T Consensus        83 d~~v~~~~~-----~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~n  129 (206)
T d1fmta2          83 DVMVVVAYG-----LILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWA  129 (206)
T ss_dssp             SEEEEESCC-----SCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHH
T ss_pred             eEEEeeccc-----cccchhhHhcCCCCeeecCchhhHhhhhhhhhhhHHHc
Confidence            776664432     567788888877777766665     565444555555

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=80.92  E-value=0.79  Score=37.02  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcc--cCEEEEcCC
Q psy3240          43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQ--SDFIIITSA  105 (274)
Q Consensus        43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~--aDvVil~lP  105 (274)
                      ++|.|.|. |-||+.+++.|...|. +++.+.+.....   ..+. ...++++++.  .|+|+-+.-
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~~~---~Dl~~~~~~~~~i~~~~~D~Vih~Aa   63 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFC---GDFSNPKGVAETVRKLRPDVIVNAAA   63 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSSSC---CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcccc---CcCCCHHHHHHHHHHcCCCEEEEecc
Confidence            57999994 9999999999999886 566655543211   1111 1235566654  488876553

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=80.91  E-value=0.63  Score=38.38  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=26.4

Q ss_pred             EEEEEccChHHHHHHHHHccCCC-eEEEEeCC
Q psy3240          44 TVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSR   74 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r   74 (274)
                      +|.|||.|.+|.++|..|...|. ++++.+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            58999999999999999998996 46677654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.62  E-value=1.3  Score=31.95  Aligned_cols=34  Identities=24%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             CCEEEEEccChHHHHHHHHHccCC---CeEEEEeCCC
Q psy3240          42 NSTVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRS   75 (274)
Q Consensus        42 gktVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~   75 (274)
                      .+++.|||.|.+|-.+|..+..+|   .++.++....
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999999999999997776554   4566665433

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.45  E-value=0.46  Score=37.22  Aligned_cols=20  Identities=30%  Similarity=0.773  Sum_probs=18.2

Q ss_pred             EEEEEccChHHHHHHHHHcc
Q psy3240          44 TVGIVGCGRIGLSVLEKLIP   63 (274)
Q Consensus        44 tVGIIGlG~IG~~iA~~L~~   63 (274)
                      +|+|+|+|.+|+.+++.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHH
Confidence            68999999999999998864

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=5.3  Score=31.72  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC----Ch---h-HhhcCCccc-------------CHHHHh--cccCE
Q psy3240          43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK----KP---E-ADKRGAEHT-------------NIDDLC--KQSDF   99 (274)
Q Consensus        43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~----~~---~-a~~~g~~~~-------------sl~ell--~~aDv   99 (274)
                      +||+++|.+..|..+.+.|...|.+++++.....    ..   . +.+.++...             ++-+.+  .+.|+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dl   80 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAEL   80 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCc
Confidence            5899999999999999999888987765432111    11   1 333443210             111222  24788


Q ss_pred             EEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC-----CCchhcHHHHHh
Q psy3240         100 IIITSALTPDTHHLINRARLESMKPGAILINTS-----RGQLVDQEALID  144 (274)
Q Consensus       100 Vil~lPlt~~T~~li~~~~l~~mk~gailINv~-----RG~iVde~aL~~  144 (274)
                      ++++--     ..++.++.++..+-|.+=+-.|     ||.---.-++..
T Consensus        81 iv~~~~-----~~ii~~~~l~~~~~g~iN~H~slLP~yrG~~pi~wai~~  125 (203)
T d2bw0a2          81 NVLPFC-----SQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIH  125 (203)
T ss_dssp             EEESSC-----SSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHT
T ss_pred             eEEeec-----chhhhhhhhhhhhhHhhhhhhcccccccccceeeeeecc
Confidence            887542     2467788888777665544444     454444444444