Psyllid ID: psy3275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTAKN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccccccccccccccEEEcccHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHcEEcccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEcccccccEEEEEccHHHHHHHHccccccccccccEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEcccHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkrlrhsqvrgisiklqeeererrdnyvpevsALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEiaiiptkplrnkiAGGLIKRTLTAKN
Flexible Loop (DISEMBL)
mkrlrhsqvrgisiklqeeererrdnyvpevsaleqdvievdsetKDMLRmlgrvrtktvkkasRVIIEKYytkltldfhtnkRICEEiaiiptkplrnkiagglikrtltakn
Low Complexity Region (SEG)
MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTAKN
Disordered region (IsUnstruct)
**************************************I*******DMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKR******
Disordered Region (DISOPRED)
*******QV***SI************YVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRT*****
Disordered Region (DISEMBL)
*********RGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTAKN
Disordered Region (DISPRO)
*****HSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTAKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
P17704	131	40S ribosomal protein S17	yes	N/A	0.456	0.396	0.903	3e-22
Q962R2	133	40S ribosomal protein S17	N/A	N/A	0.456	0.390	0.884	5e-21
Q9U9L1	131	40S ribosomal protein S17	yes	N/A	0.456	0.396	0.884	4e-20
Q7ZUB2	135	40S ribosomal protein S17	N/A	N/A	0.456	0.385	0.846	2e-19
P08636	135	40S ribosomal protein S17	yes	N/A	0.456	0.385	0.846	2e-19
Q6QAP7	135	40S ribosomal protein S17	yes	N/A	0.456	0.385	0.846	2e-19
P63276	135	40S ribosomal protein S17	yes	N/A	0.456	0.385	0.846	2e-19
P63275	135	40S ribosomal protein S17	N/A	N/A	0.456	0.385	0.846	2e-19
P63274	135	40S ribosomal protein S17	yes	N/A	0.456	0.385	0.846	2e-19
P63273	135	40S ribosomal protein S17	yes	N/A	0.456	0.385	0.846	2e-19

>sp|P17704|RS17_DROME 40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/52 (90%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA++VIIEKYYT+LTLDFHTNKRICEE+AIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAG 52

Drosophila melanogaster (taxid: 7227)

>sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/52 (88%), Positives = 51/52 (98%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+++IIEKYYT+LTLDF TNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAG 52

Spodoptera frugiperda (taxid: 7108)

>sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/52 (88%), Positives = 50/52 (96%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRML 52
           MKRLRHSQVRGISIKLQEEERERRDNYVP+VSALEQD+IEVD ETK+ML+ L
Sbjct: 58  MKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHL 109

Anopheles gambiae (taxid: 7165)

>sp|Q7ZUB2|RS17_COTJA 40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Coturnix coturnix japonica (taxid: 93934)

>sp|P08636|RS17_CHICK 40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Gallus gallus (taxid: 9031)

>sp|Q6QAP7|RS17_PIG 40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Sus scrofa (taxid: 9823)

>sp|P63276|RS17_MOUSE 40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Mus musculus (taxid: 10090)

>sp|P63275|RS17_FELCA 40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Felis catus (taxid: 9685)

>sp|P63274|RS17_CRIGR 40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Cricetulus griseus (taxid: 10029)

>sp|P63273|RS17_CANFA 40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
110671428	132	putative ribosomal protein S17e [Diaphor	0.456	0.393	0.980	7e-22
187115160	130	ribosomal protein S17 [Acyrthosiphon pis	0.543	0.476	0.815	2e-21
195428873	135	GK16630 [Drosophila willistoni] gi|19415	0.491	0.414	0.875	2e-21
50344494	131	S17e ribosomal protein [Carabus granulat	0.456	0.396	0.942	3e-21
121543913	129	putative ribosomal protein S17e [Maconel	0.456	0.403	0.942	3e-21
160550171	131	putative 40S ribosomal protein RPS17 [Fl	0.456	0.396	0.942	3e-21
91094139	131	PREDICTED: similar to S17e ribosomal pro	0.456	0.396	0.942	4e-21
50344498	131	S17e ribosomal protein [Biphyllus lunatu	0.456	0.396	0.942	4e-21
70909569	131	ribosomal protein S17e [Eucinetus sp. AP	0.456	0.396	0.942	4e-21
264667437	131	ribosomal protein S17 [Chrysomela tremul	0.456	0.396	0.942	4e-21

>gi|110671428|gb|ABG81965.1| putative ribosomal protein S17e [Diaphorina citri]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187115160|ref|NP_001119681.1| ribosomal protein S17 [Acyrthosiphon pisum] gi|89473764|gb|ABD72694.1| putative ribosomal protein S17e [Acyrthosiphon pisum] gi|239789971|dbj|BAH71577.1| ACYPI000073 [Acyrthosiphon pisum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 59/65 (90%), Gaps = 3/65 (4%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG---GLIKR 108
           +GRVRTKTVKKA+RVIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG    L+KR
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAGFVTHLMKR 60

Query: 109 TLTAK 113
             T++
Sbjct: 61  LRTSQ 65

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428873|ref|XP_002062490.1| GK16630 [Drosophila willistoni] gi|194158575|gb|EDW73476.1| GK16630 [Drosophila willistoni]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 48  MLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           ML + GRVRTKTVKKA++VIIEKYYT+LTLDFHTNKRICEE+AIIPTKPLRNKIAG
Sbjct: 1   MLNIYGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAG 56

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50344494|emb|CAH04333.1| S17e ribosomal protein [Carabus granulatus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKAS+VIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASKVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Carabus granulatus

Species: Carabus granulatus

Genus: Carabus

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543913|gb|ABM55621.1| putative ribosomal protein S17e [Maconellicoccus hirsutus]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKA+RVIIEKYYTKLTLDFHTNKRICEEIAIIP+KPLRNKIAG
Sbjct: 1   MGRVRTKTVKKAARVIIEKYYTKLTLDFHTNKRICEEIAIIPSKPLRNKIAG 52

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160550171|gb|ABX44790.1| putative 40S ribosomal protein RPS17 [Flustra foliacea]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKASRVIIEKYYT+LTLDFHTNKRICEEIAIIP+KPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASRVIIEKYYTRLTLDFHTNKRICEEIAIIPSKPLRNKIAG 52

Source: Flustra foliacea

Species: Flustra foliacea

Genus: Flustra

Family: Flustridae

Order: Cheilostomatida

Class: Gymnolaemata

Phylum: Bryozoa

Superkingdom: Eukaryota

>gi|91094139|ref|XP_969085.1| PREDICTED: similar to S17e ribosomal protein [Tribolium castaneum] gi|270010869|gb|EFA07317.1| hypothetical protein TcasGA2_TC015910 [Tribolium castaneum]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKAS+VIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASKVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50344498|emb|CAH04335.1| S17e ribosomal protein [Biphyllus lunatus]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKAS+VIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASKVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909569|emb|CAJ17206.1| ribosomal protein S17e [Eucinetus sp. APV-2005]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKAS+VIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASKVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Eucinetus sp. APV-2005

Species: Eucinetus sp. APV-2005

Genus: Eucinetus

Family: Eucinetidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667437|gb|ACY71304.1| ribosomal protein S17 [Chrysomela tremula]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 52/52 (100%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKKAS+VIIEKYYT+LTLDFHTNKRICEEIAIIPTKPLRNKIAG
Sbjct: 1   MGRVRTKTVKKASKVIIEKYYTRLTLDFHTNKRICEEIAIIPTKPLRNKIAG 52

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0005533	131	RpS17 "Ribosomal protein S17"	0.456	0.396	0.903	1.9e-21
UNIPROTKB|Q9U9L1	131	RpS17 "40S ribosomal protein S	0.456	0.396	0.884	1.9e-19
UNIPROTKB|A5PK63	135	RPS17 "40S ribosomal protein S	0.456	0.385	0.846	4e-19
ZFIN|ZDB-GENE-040426-1852	134	rps17 "ribosomal protein S17"	0.456	0.388	0.826	4e-19
UNIPROTKB|H0YN88	136	RPS17L "40S ribosomal protein	0.456	0.382	0.846	5.1e-19
ZFIN|ZDB-GENE-050320-15	134	zgc:114188 "zgc:114188" [Danio	0.456	0.388	0.846	5.1e-19
UNIPROTKB|P08636	135	RPS17 "40S ribosomal protein S	0.456	0.385	0.846	5.1e-19
UNIPROTKB|P63273	135	RPS17 "40S ribosomal protein S	0.456	0.385	0.846	5.1e-19
UNIPROTKB|H0YK46	191	RPS17 "40S ribosomal protein S	0.456	0.272	0.846	5.1e-19
UNIPROTKB|P08708	135	RPS17 "40S ribosomal protein S	0.456	0.385	0.846	5.1e-19

FB|FBgn0005533 RpS17 "Ribosomal protein S17" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/52 (90%), Positives = 52/52 (100%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA++VIIEKYYT+LTLDFHTNKRICEE+AIIPTKPLRNKIAG
Sbjct:     1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAG 52

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IBA

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

UNIPROTKB|Q9U9L1 RpS17 "40S ribosomal protein S17" [Anopheles gambiae (taxid:7165)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 46/52 (88%), Positives = 50/52 (96%)

Query:     1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRML 52
             MKRLRHSQVRGISIKLQEEERERRDNYVP+VSALEQD+IEVD ETK+ML+ L
Sbjct:    58 MKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHL 109

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|A5PK63 RPS17 "40S ribosomal protein S17" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040426-1852 rps17 "ribosomal protein S17" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 43/52 (82%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RV+IEKYYT+L  DFH NKR+CEEIAIIP+KPLRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVVIEKYYTRLGNDFHINKRVCEEIAIIPSKPLRNKIAG 52

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006414 "translational elongation" evidence=IBA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

UNIPROTKB|H0YN88 RPS17L "40S ribosomal protein S17-like" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-050320-15 zgc:114188 "zgc:114188" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|P08636 RPS17 "40S ribosomal protein S17" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

UNIPROTKB|P63273 RPS17 "40S ribosomal protein S17" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H0YK46 RPS17 "40S ribosomal protein S17" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P08708 RPS17 "40S ribosomal protein S17" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:    52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
             +GRVRTKTVKKA+RVIIEKYYT+L  DFHTNKR+CEEIAIIP+K LRNKIAG
Sbjct:     1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG 52

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0006414 "translational elongation" evidence=ISS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0042274 "ribosomal small subunit biogenesis" evidence=IMP

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006413 "translational initiation" evidence=NAS;TAS

GO:0034101 "erythrocyte homeostasis" evidence=IMP

GO:0006412 "translation" evidence=IC;TAS

GO:0005840 "ribosome" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42520	RS17_DICDI	No assigned EC number	0.6538	0.4561	0.3851	yes	N/A
A5PK63	RS17_BOVIN	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
P04644	RS17_RAT	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
P08636	RS17_CHICK	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
P0CW22	RS17L_HUMAN	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
Q9SQZ1	RS173_ARATH	No assigned EC number	0.7692	0.4561	0.3714	yes	N/A
P17704	RS17_DROME	No assigned EC number	0.9038	0.4561	0.3969	yes	N/A
O01692	RS17_CAEEL	No assigned EC number	0.7692	0.4298	0.3769	yes	N/A
Q6QAP7	RS17_PIG	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
Q967G1	RS17_THEAN	No assigned EC number	0.6538	0.4561	0.3969	yes	N/A
P08708	RS17_HUMAN	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
Q9U9L1	RS17_ANOGA	No assigned EC number	0.8846	0.4561	0.3969	yes	N/A
P63276	RS17_MOUSE	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
P63274	RS17_CRIGR	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
Q4MYY1	RS17_THEPA	No assigned EC number	0.6538	0.4561	0.4	yes	N/A
P63273	RS17_CANFA	No assigned EC number	0.8461	0.4561	0.3851	yes	N/A
O42984	RS17A_SCHPO	No assigned EC number	0.75	0.4561	0.3969	yes	N/A
P14127	RS17B_YEAST	No assigned EC number	0.7307	0.4210	0.3529	yes	N/A
P02407	RS17A_YEAST	No assigned EC number	0.7307	0.4210	0.3529	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
pfam00833	122	pfam00833, Ribosomal_S17e, Ribosomal S17	4e-27
PTZ00154	134	PTZ00154, PTZ00154, 40S ribosomal protein S17; Pro	9e-27
pfam00833	122	pfam00833, Ribosomal_S17e, Ribosomal S17	2e-21
PTZ00154	134	PTZ00154, PTZ00154, 40S ribosomal protein S17; Pro	6e-19
COG1383	74	COG1383, RPS17A, Ribosomal protein S17E [Translati	3e-15
PRK01151	58	PRK01151, rps17E, 30S ribosomal protein S17e; Vali	2e-11

>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17

 Score = 96.3 bits (240), Expect = 4e-27
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 3/60 (5%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG---GLIKR 108
           +GRVRTKTVK+A+RVIIEKYY+KLTLDF TNKRIC+E+AIIP+K LRNKIAG    L+KR
Sbjct: 1   MGRVRTKTVKRAARVIIEKYYSKLTLDFQTNKRICDEVAIIPSKRLRNKIAGYVTHLMKR 60

Length = 122

>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional

 Score = 95.9 bits (239), Expect = 9e-27
 Identities = 41/52 (78%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVK+A+R I+EKYY+KLTLDFHTNK+I EE+AIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAG 52

Length = 134

>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17

 Score = 81.6 bits (202), Expect = 2e-21
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLG 53
           MKR++   VRGIS+KLQEEERERRDNYVPEVS L+  +IEVD +TK+ML+ LG
Sbjct: 58  MKRIQRGPVRGISLKLQEEERERRDNYVPEVSELDVPLIEVDPDTKEMLKSLG 110

Length = 122

>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional

 Score = 75.4 bits (186), Expect = 6e-19
 Identities = 34/53 (64%), Positives = 42/53 (79%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLG 53
           MKR++   VRGIS+KLQEEERERR +YVPE S ++ D I VD +TKDML+ LG
Sbjct: 58  MKRIQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLG 110

Length = 134

>gnl|CDD|224301 COG1383, RPS17A, Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

 Score = 64.7 bits (158), Expect = 3e-15
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GR+R K VK+ +R +IEKY  K T DF TNKR+ EE+A I +K LRN+IAG
Sbjct: 1   MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAG 52

Length = 74

>gnl|CDD|179234 PRK01151, rps17E, 30S ribosomal protein S17e; Validated

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           G +R K +K+ +  ++EKY    T DF TNK++ EE+  I +K +RN+IAG
Sbjct: 1   GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAG 51

Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG0187|consensus	134		99.98
PRK01151	58	rps17E 30S ribosomal protein S17e; Validated	99.97
PTZ00154	134	40S ribosomal protein S17; Provisional	99.96
PF00833	121	Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210	99.95
PTZ00154	134	40S ribosomal protein S17; Provisional	99.95
COG1383	74	RPS17A Ribosomal protein S17E [Translation, riboso	99.95
KOG0187|consensus	134		99.95
PF00833	121	Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210	99.95

>KOG0187|consensus

Probab=99.98  E-value=5.7e-34  Score=211.70  Aligned_cols=59  Identities=69%  Similarity=1.012  Sum_probs=56.8

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccchh
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKT   59 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRtk~   59 (114)
                      |||||+|||||||||||||||||||||||++|+||++.|+||+||+|||+++|+.-+..
T Consensus        58 mkrIqkGpvRGISiKLQEEERErrdnyVPevSaLd~d~ieVD~dT~eMlk~lg~~~~~~  116 (134)
T KOG0187|consen   58 MKRIQKGPVRGISIKLQEEERERRDNYVPEVSALDQDIIEVDPDTKEMLKLLGFGSLSG  116 (134)
T ss_pred             HHHHHcCCccceeEeecHHHHHhhcccCcchhhcchhheeeChhHHHHHHHcCCCCcCc
Confidence            89999999999999999999999999999999999999999999999999999977654

>PRK01151 rps17E 30S ribosomal protein S17e; Validated

Probab=99.97  E-value=3.7e-32  Score=178.35  Aligned_cols=58  Identities=38%  Similarity=0.653  Sum_probs=56.5

Q ss_pred             CCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeec
Q psy3275          53 GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTL  110 (114)
Q Consensus        53 g~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~  110 (114)
                      |+|||++||++|++|+|+||++||.|||+||++|+++|+|+||+|||+|||||||+++
T Consensus         1 G~Ir~k~IKr~a~~lieky~~~ft~DFe~NK~~v~e~a~i~SK~lRNrIAGYiT~~~~   58 (58)
T PRK01151          1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK   58 (58)
T ss_pred             CCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcCccHhHHHHHhhhhhhccC
Confidence            7899999999999999999999999999999999999999999999999999999864

>PTZ00154 40S ribosomal protein S17; Provisional

Probab=99.96  E-value=2.3e-30  Score=193.05  Aligned_cols=55  Identities=62%  Similarity=0.888  Sum_probs=53.8

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCc
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRV   55 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~V   55 (114)
                      |||||+|||||||||||||||||||||||++|+||++.|+||++|+|||++||+-
T Consensus        58 mkri~~gpvrgis~klqeeererr~~yvPe~s~~~~~~i~vd~~t~~ml~~~~~~  112 (134)
T PTZ00154         58 MKRIQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLGLG  112 (134)
T ss_pred             HhhhccCCccccceehhHHHHHHhhccCCcchhcccceeEECHHHHHHHHHcCCC
Confidence            7999999999999999999999999999999999999999999999999999984

>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.95  E-value=1.9e-30  Score=190.83  Aligned_cols=60  Identities=58%  Similarity=0.890  Sum_probs=52.8

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT  111 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~  111 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus         1 MG~Vrtk~IKr~a~~lieky~~~~t~DF~~NK~v~~eva~i~SKklRNkIAGYvThlmKr   60 (121)
T PF00833_consen    1 MGRVRTKTIKRAARELIEKYYDRFTNDFETNKKVVEEVAIIPSKKLRNKIAGYVTHLMKR   60 (121)
T ss_dssp             ------HHHHHHHHHHHTTCTTTSSSSHHHHHHHHHHCSSSSSTTHHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.

>PTZ00154 40S ribosomal protein S17; Provisional

Probab=99.95  E-value=7.2e-30  Score=190.40  Aligned_cols=61  Identities=67%  Similarity=0.964  Sum_probs=59.2

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA  112 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~  112 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+++|+|+||+|||+|||||||+++..
T Consensus         1 MG~VRtk~VKr~a~~LiEkY~~~ft~DFe~NKkvv~eva~I~SKrlRNrIAGYIThlmkri   61 (134)
T PTZ00154          1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRI   61 (134)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhh
Confidence            8999999999999999999999999999999999999999999999999999999998754

>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.4e-30  Score=176.92  Aligned_cols=61  Identities=49%  Similarity=0.706  Sum_probs=59.3

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA  112 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~  112 (114)
                      ||+|||++|||+|++|+|+||+.||.||++||++|++++.|+||+|||+|||||||+++..
T Consensus         1 MG~IR~~~vKR~a~el~ekY~~~ft~dFe~NK~~V~e~~~i~SK~lRN~IAGYiT~~~~~~   61 (74)
T COG1383           1 MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKRI   61 (74)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999998754

>KOG0187|consensus

Probab=99.95  E-value=1.1e-29  Score=188.84  Aligned_cols=59  Identities=76%  Similarity=1.120  Sum_probs=57.9

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeec
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTL  110 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~  110 (114)
                      ||+||++++|++|+.|+|+||.++++|||+||++|+|+|+||||+|||+|||||||+++
T Consensus         1 MGrVrtktvKkaar~iiEkYy~rl~~dF~tNk~vceEvAII~SKkLrNkIAGyvtHLmk   59 (134)
T KOG0187|consen    1 MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTHLMK   59 (134)
T ss_pred             CCcchhHHHHHHHHHHHHHHhccccccccccchhehheeeecchhhhhHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999875

>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.95  E-value=5.1e-29  Score=183.23  Aligned_cols=57  Identities=70%  Similarity=1.017  Sum_probs=53.7

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccc
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRT   57 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRt   57 (114)
                      |||||+|||||||||||||||||||||||++|+||++.|+|||||+|||++||+-..
T Consensus        58 mKriq~g~vrgis~klqEeErerr~n~vpe~s~~d~~~i~VD~~T~emlk~l~~~~~  114 (121)
T PF00833_consen   58 MKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGSL  114 (121)
T ss_dssp             HHHHTSSSSTTCSSCCCCHHHHCCTSSSSSSSEEESCS-ECTHHHHHHHHHTTTTSS
T ss_pred             HHHHHhccccccchhhhHHHHHhhcccCCccccccCCcceeChhHHHHHHHcCCCCC
Confidence            799999999999999999999999999999999999999999999999999998543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3iz6_Q	141	Localization Of The Small Subunit Ribosomal Protein		7e-18
3izb_Q	136	Localization Of The Small Subunit Ribosomal Protein		2e-17
2xzm_V	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-15
3zey_L	142	High-resolution Cryo-electron Microscopy Structure		8e-12
1rq6_A	62	Solution Structure Of Ribosomal Protein S17e From M		3e-08
3j20_S	67	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-05

>pdb|3IZ6|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 141

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 48/52 (92%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVKK SR +IEKYY+++TLDFHTNK++ EE++I+P+K LRNK+AG
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAG 52

>pdb|3IZB|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 46/52 (88%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVK+AS+ +IE+YY KLTLDF TNKR+C+EIA I +K LRNKIAG
Sbjct: 1   MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAG 52

>pdb|2XZM|V Chain V, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVK+A++ +IE YY+KLT DFH NK+I  E+A +P+K LRNKIAG
Sbjct: 1   MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAG 52

>pdb|3ZEY|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 142

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +G++RTKTVK+AS+ I+EKY++KL  DF+ NKRI  ++ I  +K L+NKIAG
Sbjct: 1   MGKIRTKTVKRASKQIVEKYFSKLNKDFYQNKRIVMDVTIARSKKLKNKIAG 52

>pdb|1RQ6|A Chain A, Solution Structure Of Ribosomal Protein S17e From Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target Tt802 ONTARIO CENTER FOR Structural Proteomics Target Mth0803 Length = 62

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +G +RT  VK+ ++ +IE +  K T DF TNK++ EE + + TK LRNKIAG
Sbjct: 1   MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAG 52

>pdb|3J20|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 67

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIK 107
           +G++R   +K+ +R ++ KY  + T DF  NK+  +E+  + +K +RN+IAG + K
Sbjct: 1   MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTK 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	2e-21
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	5e-19
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	1e-16
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	9e-19
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	2e-17
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	3e-18
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	2e-13

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1 Length = 62

 Score = 79.7 bits (197), Expect = 2e-21
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           G +RT  VK+ ++ +IE +  K T DF TNK++ EE + + TK LRNKIAG
Sbjct: 2   GNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAG 52

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 141

 Score = 75.8 bits (186), Expect = 5e-19
 Identities = 36/51 (70%), Positives = 47/51 (92%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           GRVRTKTVKK SR +IEKYY+++TLDFHTNK++ EE++I+P+K LRNK+AG
Sbjct: 2   GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAG 52

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 141

 Score = 69.3 bits (169), Expect = 1e-16
 Identities = 35/67 (52%), Positives = 45/67 (67%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTV 60
           M+R++   VRGIS+KLQEEERERR ++VPE SALE + I VD ET +ML  LG      V
Sbjct: 58  MRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGV 117

Query: 61  KKASRVI 67
           ++   V 
Sbjct: 118 ERQQEVS 124

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V Length = 130

 Score = 74.6 bits (183), Expect = 9e-19
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           GRVRTKTVK+A++ +IE YY+KLT DFH NK+I  E+A +P+K LRNKIAG
Sbjct: 2   GRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAG 52

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V Length = 130

 Score = 71.6 bits (175), Expect = 2e-17
 Identities = 32/65 (49%), Positives = 46/65 (70%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTV 60
           MKR++   VRGIS+K+QEEERERR +YVPE S ++ + + +D+ETK+ML+ LG      +
Sbjct: 58  MKRIQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGL 117

Query: 61  KKASR 65
             AS 
Sbjct: 118 VSASA 122

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R Length = 136

 Score = 73.6 bits (180), Expect = 3e-18
 Identities = 38/51 (74%), Positives = 45/51 (88%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           GRVRTKTVK+AS+ +IE+YY KLTLDF TNKR+C+EIA I +K LRNKIAG
Sbjct: 2   GRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAG 52

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R Length = 136

 Score = 61.3 bits (148), Expect = 2e-13
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALE----QDVIEVDSETKDMLRMLGRVR 56
           MKR++   VRGIS KLQEEERER+D YVPEVSAL+      V+ VD++T D+++ LG   
Sbjct: 58  MKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKL 117

Query: 57  TKTVKKASRVIIEKY 71
             +V   S     +Y
Sbjct: 118 PLSVINVSAQRDRRY 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	99.97
3j20_S	67	30S ribosomal protein S17E; archaea, archaeal, KIN	99.97
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	99.97
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	99.97
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	99.97
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	99.96
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	99.96
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	99.95

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1

Probab=99.97  E-value=2e-34  Score=190.20  Aligned_cols=61  Identities=41%  Similarity=0.569  Sum_probs=59.2

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA  112 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~  112 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||+++..
T Consensus         1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~   61 (62)
T 1rq6_A            1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQ   61 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999999999999999999999999999999988754

>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=4.8e-34  Score=190.78  Aligned_cols=60  Identities=32%  Similarity=0.579  Sum_probs=58.6

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT  111 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~  111 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||+++.
T Consensus         1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~   60 (67)
T 3j20_S            1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRM   60 (67)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998764

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.3e-32  Score=205.53  Aligned_cols=58  Identities=57%  Similarity=0.812  Sum_probs=55.2

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccch
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTK   58 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRtk   58 (114)
                      |||||+||||||||||||||||||||||||+|+||++.|+|||||+|||++||+-...
T Consensus        58 mKriq~GpvrgisiklqEeERerrdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~  115 (141)
T 3iz6_Q           58 MRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLP  115 (141)
T ss_dssp             HHHHCSCCCCCSSCCSSCCCCCSCSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCS
T ss_pred             hhccccCCccccceehhHHHHHHHhccCCccccccccceeECHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999999999999999999999999999999985443

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R

Probab=99.97  E-value=4.4e-32  Score=201.64  Aligned_cols=55  Identities=60%  Similarity=0.937  Sum_probs=48.7

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCccccccccc----ceeechHHHHHHHHhCCc
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQD----VIEVDSETKDMLRMLGRV   55 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~----~i~vd~~t~~ml~~mg~V   55 (114)
                      |||||+||||||||||||||||||||||||+|+||++    .|+|||||+|||++||+-
T Consensus        58 mKriq~GpvrgisiklqEeERerrdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~  116 (136)
T 3u5c_R           58 MKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK  116 (136)
T ss_dssp             HHHHTTSCBTTBCCSHHHHHHHTTCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC
T ss_pred             hcccccCCcccceeehhHHHHHHhhccCCcchhhcccccCCceEEChHHHHHHHHcCCC
Confidence            7999999999999999999999999999999999998    899999999999999985

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V

Probab=99.97  E-value=6.2e-32  Score=199.64  Aligned_cols=57  Identities=53%  Similarity=0.832  Sum_probs=54.5

Q ss_pred             CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccc
Q psy3275           1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRT   57 (114)
Q Consensus         1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRt   57 (114)
                      |||||+|||||||||||||||||||||||++|+||+++|+|||||+|||++||+-..
T Consensus        58 mkriq~gpvrgis~klqEeererrd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~  114 (130)
T 2xzm_V           58 MKRIQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNI  114 (130)
T ss_dssp             HHHTTTSCCTTCCCTTTTHHHHHTTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSS
T ss_pred             hhhcccCcccccccchhHHHHHhhhccCCcccccccceeEECHHHHHHHHHcCCCCC
Confidence            789999999999999999999999999999999999999999999999999997543

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V

Probab=99.96  E-value=5.9e-31  Score=194.45  Aligned_cols=61  Identities=56%  Similarity=0.796  Sum_probs=58.3

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA  112 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~  112 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++..
T Consensus         1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkri   61 (130)
T 2xzm_V            1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRI   61 (130)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhc
Confidence            8999999999999999999999999999999999999999999999999999999988754

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R

Probab=99.96  E-value=5.2e-31  Score=195.87  Aligned_cols=60  Identities=63%  Similarity=0.938  Sum_probs=57.7

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT  111 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~  111 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKr   60 (136)
T 3u5c_R            1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR   60 (136)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcc
Confidence            899999999999999999999999999999999999999999999999999999998864

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=8.7e-31  Score=195.62  Aligned_cols=60  Identities=60%  Similarity=0.924  Sum_probs=58.6

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT  111 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~  111 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKr   60 (141)
T 3iz6_Q            1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR   60 (141)
T ss_dssp             CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhc
Confidence            899999999999999999999999999999999999999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1rq6a_	62	a.4.15.1 (A:) ribosomal protein S17e {Methanobacte	2e-23

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 62

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 83.5 bits (207), Expect = 2e-23
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +G +RT  VK+ ++ +IE +  K T DF TNK++ EE + + TK LRNKIAG
Sbjct: 1   MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAG 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1rq6a_	62	ribosomal protein S17e {Methanobacterium thermoaut	99.97

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=2.3e-34  Score=188.32  Aligned_cols=61  Identities=41%  Similarity=0.569  Sum_probs=59.2

Q ss_pred             hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275          52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA  112 (114)
Q Consensus        52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~  112 (114)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||+++..
T Consensus         1 MG~Ir~k~iKr~a~~lieky~~~ft~DF~~NK~~v~e~a~i~SKklRN~IAGYvTrl~k~~   61 (62)
T d1rq6a_           1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQ   61 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhHHHHHHHHHHHHchhHhccCHHHHHHHHHHHhcCCchhHhHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999988754