Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 125
cd01276 104
cd01276, PKCI_related, Protein Kinase C Interactin
2e-57 pfam11969 113
pfam11969, DcpS_C, Scavenger mRNA decapping enzyme
8e-39 pfam01230 97
pfam01230, HIT, HIT domain
1e-34 PRK10687 119
PRK10687, PRK10687, purine nucleoside phosphoramid
2e-34 COG0537 138
COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy
3e-33 cd01277 103
cd01277, HINT_subgroup, HINT (histidine triad nucl
2e-27 cd00468 86
cd00468, HIT_like, HIT family: HIT (Histidine tria
2e-18 cd01278 104
cd01278, aprataxin_related, aprataxin related: Apr
3e-12 cd01275 126
cd01275, FHIT, FHIT (fragile histidine family): FH
5e-12
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
Back Hide alignment and domain information
Score = 172 bits (439), Expect = 2e-57
Identities = 58/104 (55%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D IF +I+R EIP ++EDD+ +AF+DINP+AP+H LVIP+K I SLS+A +ED E+LG
Sbjct: 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLG 60
Query: 75 HLMVTASKLAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVMGG 117
HL+ A+K+AK G+ +GYRLV+N G+ G Q V+HLH+H++GG
Sbjct: 61 HLLSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members. Length = 104
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding
Back Show alignment and domain information
Score = 125 bits (317), Expect = 8e-39
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+F I+ E P ++EDD VAF DI P+AP+H LVIP+K I SL + E +LG
Sbjct: 1 KWVFCIIINGEEPERIVYEDDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLG 60
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMG 116
H+ A K+AK++ + YR V+ G H SVYHLH+HV+
Sbjct: 61 HMREVAKKIAKEKYNEG-YRDVLRLGFHYGPSVYHLHLHVIA 101
This family consists of several scavenger mRNA decapping enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger pyrophosphatase that hydrolyses the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. The C-terminal domain contains a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. The central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function. Length = 113
>gnl|CDD|216377 pfam01230, HIT, HIT domain
Back Show alignment and domain information
Score = 115 bits (289), Expect = 1e-34
Identities = 48/100 (48%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 23 RKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASK 82
R EIP ++EDD +AF DI+P+AP H LVIP+K I L + E LG LM A K
Sbjct: 1 RGEIPSKVVYEDDLVLAFLDIDPQAPGHVLVIPKKHITELHDL---TPEELGDLMSEAKK 57
Query: 83 LAKKQGLDN--GYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
+A+ G GYR+V+NNG QSV HLHIHV+ R+
Sbjct: 58 VARALGKAKADGYRIVINNGAAAGQSVPHLHIHVIPRREG 97
>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional
Back Show alignment and domain information
Score = 114 bits (288), Expect = 2e-34
Identities = 47/107 (43%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+TIF +I+R+EIP + +++D+ AF DI+P+AP H L+IP IP++++ E + LG
Sbjct: 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
++ A+K+A+++G+ ++GYRL++N RHG Q VYH+H+H++GGR L
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Back Show alignment and domain information
Score = 112 bits (283), Expect = 3e-33
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
IF +I+R EIP N ++ED+ +AF DI P AP H LVIP++ + L D D E L
Sbjct: 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLE---DLDPEELA 58
Query: 75 HLMVTASKLAKKQGLD---NGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125
L + A K+AK +GY + +NNG+ Q V+HLHIH++ +
Sbjct: 59 ELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFP 112
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Score = 96.9 bits (242), Expect = 2e-27
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
D IF +I+ EIP ++EDD +AF DINP + H LVIP+K +L + E+ L
Sbjct: 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELI 60
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
++ KK +G ++ NNGR Q V+H+H+HV+
Sbjct: 61 LAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVI 101
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression. Length = 103
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Score = 73.7 bits (181), Expect = 2e-18
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 31 IHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLA---KKQ 87
+ +D+ AF ++ P AP H LV P++ + +L + DE L L++TA ++A +K
Sbjct: 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDL-DEAL--LADLVITAQRVAAELEKH 57
Query: 88 GLDNGYRLVVNNGRHGAQSVYHLHIHVMG 116
G + VN+G QSV H+H+HV+
Sbjct: 58 GNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups. Length = 86
>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome
Back Show alignment and domain information
Score = 58.2 bits (141), Expect = 3e-12
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 16 TIFGRIL-RKEIPCNFIH-EDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL 73
F I R++ EDD+ V F DI P+A H+LVIP++ I SL ED +L
Sbjct: 2 CHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLL 61
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVNNGRHG--AQSVYHLHIHVM 115
H M T + K DN G H SV HLH+HV+
Sbjct: 62 EH-METVGR-EKLLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVI 103
All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin. Length = 104
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
Back Show alignment and domain information
Score = 58.1 bits (141), Expect = 5e-12
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 17 IFGRILRKEIPCNFI-HEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGH 75
+F I K N + + A ++ P P H LV+P + +P L + E+ L
Sbjct: 2 VFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFK 61
Query: 76 LMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
L+ A K K +G+ + +N+G+ G V H+HIH++
Sbjct: 62 LVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIV 101
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours. Length = 126
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
125
KOG3275|consensus 127
100.0 PRK10687 119
purine nucleoside phosphoramidase; Provisional
100.0 cd01276 104
PKCI_related Protein Kinase C Interacting protein
100.0 COG0537 138
Hit Diadenosine tetraphosphate (Ap4A) hydrolase an
100.0 cd01277 103
HINT_subgroup HINT (histidine triad nucleotide-bin
100.0 cd01275 126
FHIT FHIT (fragile histidine family): FHIT protein
99.98 cd01278 104
aprataxin_related aprataxin related: Aprataxin, a
99.96 PF01230 98
HIT: HIT domain; InterPro: IPR001310 The Histidine
99.96 PRK11720 346
galactose-1-phosphate uridylyltransferase; Provisi
99.94 TIGR00209 347
galT_1 galactose-1-phosphate uridylyltransferase,
99.94 cd00608 329
GalT Galactose-1-phosphate uridyl transferase (Gal
99.93 cd00468 86
HIT_like HIT family: HIT (Histidine triad) protein
99.93 PLN02643 336
ADP-glucose phosphorylase
99.91 PF11969 116
DcpS_C: Scavenger mRNA decapping enzyme C-term bin
99.91 KOG3379|consensus 150
99.89 KOG4359|consensus 166
99.79 PF02744 166
GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf
99.71 COG1085 338
GalT Galactose-1-phosphate uridylyltransferase [En
99.57 PF04677 121
CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In
99.43 KOG2958|consensus 354
99.33 KOG0562|consensus 184
99.01 KOG2476|consensus 528
98.91 KOG3969|consensus 310
97.97 KOG2477|consensus 628
97.95 cd00608 329
GalT Galactose-1-phosphate uridyl transferase (Gal
97.86 PLN03103 403
GDP-L-galactose-hexose-1-phosphate guanyltransfera
97.86 COG1085 338
GalT Galactose-1-phosphate uridylyltransferase [En
97.49 PLN02643 336
ADP-glucose phosphorylase
97.4 PRK11720 346
galactose-1-phosphate uridylyltransferase; Provisi
97.23 TIGR00672 250
cdh CDP-diacylglycerol pyrophosphatase, bacterial
97.21 TIGR00209 347
galT_1 galactose-1-phosphate uridylyltransferase,
97.19 PRK05471 252
CDP-diacylglycerol pyrophosphatase; Provisional
97.1 COG4360 298
APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr
97.02 KOG2720|consensus 431
96.78 PF02611 222
CDH: CDP-diacylglycerol pyrophosphatase; InterPro:
96.55 COG2134 252
Cdh CDP-diacylglycerol pyrophosphatase [Lipid meta
96.35 COG5075 305
Uncharacterized conserved protein [Function unknow
96.09 PF01087 183
GalP_UDP_transf: Galactose-1-phosphate uridyl tran
92.76 KOG2958|consensus 354
90.04 PF14317 62
YcxB: YcxB-like protein
83.03
>KOG3275|consensus
Back Hide alignment and domain information
Probab=100.00 E-value=3.1e-42 Score=219.28 Aligned_cols=125 Identities=62% Similarity=1.087 Sum_probs=118.8
Q ss_pred CchHhhhhccCCC-CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHH
Q psy3327 1 MSEVEKAAQAAPG-GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVT 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~-~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~ 79 (125)
+||+++++++.+. .+|.||+|+++|+|+.+||||+.++||.|..|.+|+|+|||||+|++.+..+.+.+.++|+.++.+
T Consensus 2 ~~e~~~a~~a~~~~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~ 81 (127)
T KOG3275|consen 2 ASEVEKAQTAAAGAAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPV 81 (127)
T ss_pred cchHHHHhhhcccCCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHH
Confidence 6899999988665 899999999999999999999999999999999999999999999888887777777899999999
Q ss_pred HHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEecCCCCCCCCC
Q psy3327 80 ASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125 (125)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~HviPr~~~~w~~~ 125 (125)
++++++++|+.+|||+.+|+|..+.|+|+|+|+||+|+++++||||
T Consensus 82 ~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 82 AKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred HHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 9999999999899999999999999999999999999999999998
>PRK10687 purine nucleoside phosphoramidase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-36 Score=199.68 Aligned_cols=108 Identities=44% Similarity=0.933 Sum_probs=100.7
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CCC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DNG 92 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~~ 92 (125)
++|+||+|++|+.++.+||||+.+++|+|.+|.++||+|||||+|+.++.+|+++++.++.+++..++++++..+. +++
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999988888876543 589
Q ss_pred eEEEEecCcCCCCccceeEEEEecCCCCC
Q psy3327 93 YRLVVNNGRHGAQSVYHLHIHVMGGRQLR 121 (125)
Q Consensus 93 ~~~~~~~g~~~~~~v~HlH~HviPr~~~~ 121 (125)
||+++|+|+.+||+|+|+|+|||||++++
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 99999999999999999999999998864
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
Back Show alignment and domain information
Probab=100.00 E-value=4.2e-34 Score=183.13 Aligned_cols=103 Identities=56% Similarity=1.033 Sum_probs=98.1
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CCCe
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DNGY 93 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~~~ 93 (125)
+|+||++++++.+.++|||++.+++|.|.+|.++||+||+||+|++++.+|+++|..++.+++..++++.+.++. +++|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 599999999998889999999999999999999999999999999999999999999999999999999999874 5799
Q ss_pred EEEEecCcCCCCccceeEEEEecC
Q psy3327 94 RLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 94 ~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
|+++|+|+.+|++++|+|+|||+|
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeCC
Confidence 999999999999999999999986
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Back Show alignment and domain information
Probab=100.00 E-value=1.2e-33 Score=189.62 Aligned_cols=104 Identities=39% Similarity=0.638 Sum_probs=91.7
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC---CC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG---LD 90 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~---~~ 90 (125)
+.|.||++++++.++.+||||+++++|+|.+|.++||+|||||+|++++.+++++++. +++..+++++++++ .+
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~---~l~~~~~~ia~al~~~~~~ 77 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELA---ELFLLAQKIAKALKEAFGA 77 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHH---HHHHHHHHHHHHHHHHhCC
Confidence 3699999999999999999999999999999999999999999999999999998754 45555555555542 26
Q ss_pred CCeEEEEecCcCCCCccceeEEEEecCCCC
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviPr~~~ 120 (125)
+|||+++|+|..+||+|+|+|+|||||+..
T Consensus 78 ~g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 78 DGYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred CceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 899999999999999999999999999873
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Probab=100.00 E-value=2.5e-32 Score=174.41 Aligned_cols=103 Identities=37% Similarity=0.537 Sum_probs=90.4
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeE
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYR 94 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (125)
+|+||++++++.+..+|+|+++|+|+.+.+|..+||++|+||+|++++.+|+++|+..+.+++..+.+.+++...+++||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999999999888899999999999999999999999999999999999999987777777664444444332357999
Q ss_pred EEEecCcCCCCccceeEEEEecC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr 117 (125)
+.+|.|+..|++++|+|+|||||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 99999998999999999999998
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
Back Show alignment and domain information
Probab=99.98 E-value=1.8e-31 Score=176.52 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=92.0
Q ss_pred CccccccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeE
Q psy3327 16 TIFGRILRKEIP-CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYR 94 (125)
Q Consensus 16 C~fC~i~~~e~~-~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (125)
|+||++++++.+ +++|+|++.++++++.+|.++||+||+||+|++++.+|+++|+..+.+++..+.+.+++...+++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999999999876 6899999999999999999999999999999999999999998777777765445555443357999
Q ss_pred EEEecCcCCCCccceeEEEEecCCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+.+|+|+.+||+++|+|+|||||..
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcC
Confidence 9999999889999999999999964
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome
Back Show alignment and domain information
Probab=99.96 E-value=1.2e-28 Score=157.84 Aligned_cols=100 Identities=32% Similarity=0.507 Sum_probs=88.5
Q ss_pred CCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc-CC-C
Q psy3327 15 DTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-GL-D 90 (125)
Q Consensus 15 ~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-~~-~ 90 (125)
.|+||++++++. +.++|+|++.++++.|.+|.++||+||+||+|+.++.+|+++++.+++++++.+.+.++.. +. +
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 499999999886 4699999999999999999999999999999999999999999999999998777744442 32 4
Q ss_pred CCeEEEEecCcCCCCccceeEEEEec
Q psy3327 91 NGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
++||++++.|+. |+++|+|+|||.
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 799999999885 899999999984
All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []
Back Show alignment and domain information
Probab=99.96 E-value=4.4e-29 Score=158.46 Aligned_cols=94 Identities=44% Similarity=0.645 Sum_probs=78.4
Q ss_pred ccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC---CCCCeEEEEec
Q psy3327 23 RKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG---LDNGYRLVVNN 99 (125)
Q Consensus 23 ~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~ 99 (125)
++|.++.+||||+.++|+++.+|.++||+||+||+|++++.+|+++++..+..+. +++.+.++ .+++||+.+|+
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~---~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLV---QKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHH---HHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHH---HHHHHHHhcccccceeeccccc
Confidence 3678889999999999999999999999999999999999999988765554444 44444432 25799999999
Q ss_pred CcCCCCccceeEEEEecCCC
Q psy3327 100 GRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 100 g~~~~~~v~HlH~HviPr~~ 119 (125)
|+.+||+++|+|+|||||++
T Consensus 78 g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 78 GPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp SGGGTSSSSS-EEEEEEEST
T ss_pred hhhhcCccCEEEEEEecccC
Confidence 99999999999999999985
Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=8.6e-27 Score=176.56 Aligned_cols=114 Identities=14% Similarity=0.217 Sum_probs=93.5
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
..+.|+||+|+++|.+ .++|+|+++|+||.|.+|.++||+||+||+|+.++.+|+++++..|+++++ +++++-+.++
T Consensus 192 ~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~ 271 (346)
T PRK11720 192 EHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQ 271 (346)
T ss_pred HcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4688999999999976 489999999999999999999999999999999999999998777766665 3344434444
Q ss_pred CCCCeEEEEecCcCCC--CccceeEEEEecCC-----CCCCCCC
Q psy3327 89 LDNGYRLVVNNGRHGA--QSVYHLHIHVMGGR-----QLRWPPG 125 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~--~~v~HlH~HviPr~-----~~~w~~~ 125 (125)
...+||+++|.++..+ +.++|+|+||+||. +++|.+|
T Consensus 272 ~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aG 315 (346)
T PRK11720 272 CSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVG 315 (346)
T ss_pred CCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceee
Confidence 4457999999998654 57899999999993 3566554
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1
Back Show alignment and domain information
Probab=99.94 E-value=3.9e-26 Score=173.03 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCCCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
.++.|+||+++++|. +.++|+|+++|+||.|.+|.++||+||+||+|+.++.+|+++++..|+++++ +++++.+.++
T Consensus 192 ~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~ 271 (347)
T TIGR00209 192 EHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFE 271 (347)
T ss_pred HcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468899999999986 3699999999999999999999999999999999999999998777777665 3334434444
Q ss_pred CCCCeEEEEecCcCCCC--ccceeEEEEecCC
Q psy3327 89 LDNGYRLVVNNGRHGAQ--SVYHLHIHVMGGR 118 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~~--~v~HlH~HviPr~ 118 (125)
...+||++++.++..|+ ..+|+|+||+||.
T Consensus 272 ~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 272 TSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 43489999999987765 5567999999994
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
Back Show alignment and domain information
Probab=99.93 E-value=9e-26 Score=170.32 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=92.2
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
..+.|+||+++++|.+ .++|+||++|++|.+.+|..|||++|+||+|+.++.+|++++...|++++. +++++.+.++
T Consensus 182 ~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~ 261 (329)
T cd00608 182 KHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFN 261 (329)
T ss_pred HcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4588999999999876 699999999999999999999999999999999999999999877777776 3334444445
Q ss_pred CCCCeEEEEecCcCC----CCccceeEEEEecCCC
Q psy3327 89 LDNGYRLVVNNGRHG----AQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~----~~~v~HlH~HviPr~~ 119 (125)
...+||++++.++.. ++.++|+|+|++||+.
T Consensus 262 ~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 262 CSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 346899999998865 4689999999999954
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Probab=99.93 E-value=3.2e-25 Score=137.02 Aligned_cols=83 Identities=31% Similarity=0.550 Sum_probs=71.1
Q ss_pred EEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc---CCCCCeEEEEecCcCCCCcc
Q psy3327 31 IHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ---GLDNGYRLVVNNGRHGAQSV 107 (125)
Q Consensus 31 i~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~v 107 (125)
+|||+.++||.|.+|.++||+||+||+|+.++.+|+++++.. +..+++++.+++ ...++||+.+|+|+.+||++
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~---l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v 77 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLAD---LVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSV 77 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHH---HHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcC
Confidence 689999999999999999999999999999999999887554 444444555544 22479999999999999999
Q ss_pred ceeEEEEec
Q psy3327 108 YHLHIHVMG 116 (125)
Q Consensus 108 ~HlH~HviP 116 (125)
+|+|+||||
T Consensus 78 ~H~H~hiiP 86 (86)
T cd00468 78 PHVHLHVLP 86 (86)
T ss_pred CEEEEEeCC
Confidence 999999998
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
>PLN02643 ADP-glucose phosphorylase
Back Show alignment and domain information
Probab=99.91 E-value=3.8e-24 Score=161.73 Aligned_cols=104 Identities=19% Similarity=0.362 Sum_probs=86.9
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLD 90 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~ 90 (125)
..+.|+||+++++|. +|+|+++|+||.+.+|.++||++|+||+|+.++.+|+++|+..|+++++ +++++.+.++.
T Consensus 196 ~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~- 271 (336)
T PLN02643 196 KTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLND- 271 (336)
T ss_pred HhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 468899999999887 9999999999999999999999999999999999999999887777766 44455454554
Q ss_pred CCeEEEEecCcCC--CC--ccceeEEEEecCCC
Q psy3327 91 NGYRLVVNNGRHG--AQ--SVYHLHIHVMGGRQ 119 (125)
Q Consensus 91 ~~~~~~~~~g~~~--~~--~v~HlH~HviPr~~ 119 (125)
.+||+++++|+.. ++ ...|+|+||+||..
T Consensus 272 ~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 272 PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred CCceeeeecCCCccccCcccceEEEEEEecCcC
Confidence 4899999999863 44 34566679999953
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B
Back Show alignment and domain information
Probab=99.91 E-value=1.7e-24 Score=141.44 Aligned_cols=100 Identities=39% Similarity=0.602 Sum_probs=82.9
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC----
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKKQGL---- 89 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~---- 89 (125)
.|.||.+.+++.+..++|||+.+++|.|.+|.++.|+|||||+ |+.++.+|+.++.++|.+|...++++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999988642
Q ss_pred CCCeEEEEecCcCCCCccceeEEEEecCC
Q psy3327 90 DNGYRLVVNNGRHGAQSVYHLHIHVMGGR 118 (125)
Q Consensus 90 ~~~~~~~~~~g~~~~~~v~HlH~HviPr~ 118 (125)
...++++++. .+|++|+|+|+|...
T Consensus 81 ~~~~~~gfH~----~PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 81 SDDIRLGFHY----PPSVYHLHLHVISPD 105 (116)
T ss_dssp GGGEEEEEES----S-SSSS-EEEEEETT
T ss_pred hhhhcccccC----CCCcceEEEEEccCC
Confidence 2467777664 459999999999854
>KOG3379|consensus
Back Show alignment and domain information
Probab=99.89 E-value=8.5e-23 Score=133.71 Aligned_cols=93 Identities=19% Similarity=0.359 Sum_probs=81.5
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCcc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSV 107 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 107 (125)
+.++|++++.+||.+..|..|||+||+|+|-+.++.||+.+|..+|-...+.+.++++.....+++++.+..|+.+||+|
T Consensus 17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTV 96 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTV 96 (150)
T ss_pred ceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCccc
Confidence 68999999999999999999999999999999999999999866655555556666666555578999999999999999
Q ss_pred ceeEEEEecCCCC
Q psy3327 108 YHLHIHVMGGRQL 120 (125)
Q Consensus 108 ~HlH~HviPr~~~ 120 (125)
+|+|+||+||+.-
T Consensus 97 pHvHvHIlPR~~g 109 (150)
T KOG3379|consen 97 PHVHVHILPRKAG 109 (150)
T ss_pred ceeEEEEcccccc
Confidence 9999999999653
>KOG4359|consensus
Back Show alignment and domain information
Probab=99.79 E-value=7.7e-19 Score=115.55 Aligned_cols=103 Identities=25% Similarity=0.450 Sum_probs=88.5
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
.++.|.||+|+..+.+ .....|++.+++|.|++|.+.-|.|++||+|+.+..+|+.++..++.+++.+.+.++++...
T Consensus 29 ~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~ 108 (166)
T KOG4359|consen 29 PKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF 108 (166)
T ss_pred CCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999875433 35778999999999999999999999999999999999999999999999999999888643
Q ss_pred --CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 90 --DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 90 --~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
++..+++++..| ..||.|+|+|+|-
T Consensus 109 td~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred CCchheeEeccCCC--cceeeeeeEeeec
Confidence 357778888766 4789999999874
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
Back Show alignment and domain information
Probab=99.71 E-value=6.9e-17 Score=111.40 Aligned_cols=103 Identities=18% Similarity=0.343 Sum_probs=64.4
Q ss_pred CCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCC
Q psy3327 14 GDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLD 90 (125)
Q Consensus 14 ~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~ 90 (125)
+.|+||++++.|.. .++|+++++|+++.+.+.+.|+.++|+||+|+.++.+|+++|...|+.++. ++++.-+.++.+
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~ 92 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETS 92 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCC
Confidence 89999999987643 599999999999999999999999999999999999999999877777665 444443334444
Q ss_pred CCeEEEEecCcCCCCccc-eeEEEEec
Q psy3327 91 NGYRLVVNNGRHGAQSVY-HLHIHVMG 116 (125)
Q Consensus 91 ~~~~~~~~~g~~~~~~v~-HlH~HviP 116 (125)
..|+++++..|..+..-. ++|+|+-|
T Consensus 93 ~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 93 FPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp --EEEEEE---SSSS--TT--EEEEE-
T ss_pred CCCchhhhcCCCCcccchhhhhccccc
Confidence 689999998887654332 25666544
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Back Show alignment and domain information
Probab=99.57 E-value=8.1e-15 Score=110.04 Aligned_cols=102 Identities=21% Similarity=0.395 Sum_probs=83.4
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc--
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-- 87 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-- 87 (125)
.++.|.||+++..|.. .++|+|+++|+++.+.++..|.+++|+||+|+..+.+|++++...|++++. .+..++
T Consensus 183 ~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk---~~~~~y~~ 259 (338)
T COG1085 183 ENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILK---KLLARYDN 259 (338)
T ss_pred hcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHH---HHHHHHhh
Confidence 5889999999988765 499999999999999999999999999999999999999998666666644 555544
Q ss_pred --CCCCCeEEEEecCcCC-CCccceeEEEEec
Q psy3327 88 --GLDNGYRLVVNNGRHG-AQSVYHLHIHVMG 116 (125)
Q Consensus 88 --~~~~~~~~~~~~g~~~-~~~v~HlH~HviP 116 (125)
+.+..|+++++..+.. ...-+|+|+|++|
T Consensus 260 ~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 260 LFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred ccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 3334688888876543 3556799999999
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues
Back Show alignment and domain information
Probab=99.43 E-value=7.3e-12 Score=82.26 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=76.7
Q ss_pred ccCCCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy3327 9 QAAPGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQG 88 (125)
Q Consensus 9 ~~~~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~ 88 (125)
+....++|+||--...-....||.-++.+++.++..|..+||++|+|-.|+.++.+++++.++++..+....++..++.+
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556789999832222335899999999999999999999999999999999999999887777777776666666655
Q ss_pred CCCCeEEEEecCcCCCCccceeEEEEecC
Q psy3327 89 LDNGYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
. +.-+.-.. .....|+|+++||-
T Consensus 86 ~--~vvf~E~~----~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 86 K--DVVFFERV----RKRNPHTHIQCVPV 108 (121)
T ss_pred C--CEEEEEEe----CCCCcEEEEEEEEc
Confidence 3 22111111 24468999999984
Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
>KOG2958|consensus
Back Show alignment and domain information
Probab=99.33 E-value=2.3e-12 Score=94.54 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCCCcccccccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcC
Q psy3327 12 PGGDTIFGRILRKEI--PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQG 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~--~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~ 88 (125)
.++.|.+-+.++.|. ..++|.|+++|+++.+++...|+.+|+|||||+++|.+|++.+..+|+.+++ +..+..+.+.
T Consensus 197 ~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kydnlfe 276 (354)
T KOG2958|consen 197 EHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFE 276 (354)
T ss_pred HcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhc
Confidence 578899855555442 3589999999999999999999999999999999999999998888888766 3333333333
Q ss_pred CCCCeEEEEecCcCC---CCcccee-EEEEecC
Q psy3327 89 LDNGYRLVVNNGRHG---AQSVYHL-HIHVMGG 117 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~---~~~v~Hl-H~HviPr 117 (125)
-...|+++++..|.. +.--.|| |+|+.|.
T Consensus 277 tsfPYsmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 277 TSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred cCCccccccccCCcccccccccchhhhhhcccc
Confidence 335788888876642 2223354 8888874
>KOG0562|consensus
Back Show alignment and domain information
Probab=99.01 E-value=2.2e-10 Score=77.83 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=68.7
Q ss_pred cEEEEc-CeEEEEecCCCCCCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCc
Q psy3327 29 NFIHED-DKCVAFNDINPEAPIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQS 106 (125)
Q Consensus 29 ~ii~e~-~~~~~~~~~~p~~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 106 (125)
.++.|+ |.++++.|.+|++..|+||+||+ -+.++.....+++.++.++..+...+...++..+ ....++.|.+++++
T Consensus 16 ~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~-~~~~f~vG~HavPS 94 (184)
T KOG0562|consen 16 NVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEA-LCNYFRVGFHAVPS 94 (184)
T ss_pred eeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchh-hhhheeeeeccCcc
Confidence 455566 79999999999999999999964 3667777777788888888888888888776432 22234556668889
Q ss_pred cceeEEEEecCC
Q psy3327 107 VYHLHIHVMGGR 118 (125)
Q Consensus 107 v~HlH~HviPr~ 118 (125)
..++|+|||..+
T Consensus 95 M~~LHLHVISkD 106 (184)
T KOG0562|consen 95 MNNLHLHVISKD 106 (184)
T ss_pred hhheeEEEeecc
Confidence 999999999763
>KOG2476|consensus
Back Show alignment and domain information
Probab=98.91 E-value=1.9e-08 Score=78.16 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
.-+.|+||--.-.-....||--+++|++-++.+|.+.+|+||||-.|+.++..|+.+....+...-...++..+..+. +
T Consensus 317 ~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~-~ 395 (528)
T KOG2476|consen 317 PPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGK-D 395 (528)
T ss_pred CCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCC-e
Confidence 457799998422223458999999999999999999999999999999999999987666666666667777776664 2
Q ss_pred CeEEEEecCcCCCCccceeEEEEecC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
....-.. . --.-|+|+.+||-
T Consensus 396 ~vvfE~~----~-~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 396 AVVFERQ----S-YRSVHLQLQVIPV 416 (528)
T ss_pred EEEEEee----c-ccceeeEEEEEec
Confidence 2111111 1 1245999999985
>KOG3969|consensus
Back Show alignment and domain information
Probab=97.97 E-value=0.0001 Score=54.34 Aligned_cols=90 Identities=18% Similarity=0.349 Sum_probs=64.0
Q ss_pred cCccEEEEcC----eEEEEecC--CCC--CCceEEEEecC-CcCCCCCCChhhHHHHHHHHHHHHHHHHH-cCC-CCCeE
Q psy3327 26 IPCNFIHEDD----KCVAFNDI--NPE--APIHFLVIPRK-PIPSLSEAGDEDAEILGHLMVTASKLAKK-QGL-DNGYR 94 (125)
Q Consensus 26 ~~~~ii~e~~----~~~~~~~~--~p~--~~gh~lIiPk~-H~~~~~~L~~~e~~~l~~l~~~~~~~~~~-~~~-~~~~~ 94 (125)
...+++||+. .|+++.|. .+. -.-|++.|-.| -+.++.||+.+++.+|..+-..++.++.. .+. ++-..
T Consensus 158 E~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr 237 (310)
T KOG3969|consen 158 EDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR 237 (310)
T ss_pred cccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence 3458999875 56777772 333 25566655544 48999999999999988888866666554 454 46677
Q ss_pred EEEecCcCCCCccceeEEEEecCCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+.++.- +|.+|+|+|+++-+.
T Consensus 238 mf~HYq----PSyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 238 MFFHYQ----PSYYHLHVHIVNIKH 258 (310)
T ss_pred EEEEec----CceEEEEEEEEeccC
Confidence 777753 578899999998543
>KOG2477|consensus
Back Show alignment and domain information
Probab=97.95 E-value=0.00011 Score=58.27 Aligned_cols=101 Identities=10% Similarity=-0.083 Sum_probs=65.0
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEec-CCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFND-INPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~-~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
-++|++|---.......||--....|+.++ ..+...||++|+|-.|..+-..|++..++++.....-.-.+....+.
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~-- 483 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNL-- 483 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCC--
Confidence 467999984333333567777777777776 55567999999999999998889888766554444422233333232
Q ss_pred CeEEEEecCcCCCCccceeEEEEecC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGG 117 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr 117 (125)
+.- .+-+.+ .-+.-+|+-+|-||-
T Consensus 484 dvi-FyE~a~-~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 484 DVI-FYENAP-SLQRRPHTAIECIPV 507 (628)
T ss_pred CeE-EEeccC-ccccCCceeEEEeec
Confidence 221 122222 124578999999985
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
Back Show alignment and domain information
Probab=97.86 E-value=0.00013 Score=55.52 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=46.2
Q ss_pred eEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC--CCC-eEEEEecCcCCCCccceeEEEEec
Q psy3327 50 HFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL--DNG-YRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 50 h~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~--~~~-~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.++|...+|..++.+++.+++ .+++..-++-.+.+.. .-. +.+.-|.|..+|.|..|-|..|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEI---REVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHH---HHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 678899999999999998874 3444434444444432 123 345678899999999999999875
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Back Show alignment and domain information
Probab=97.86 E-value=8.1e-05 Score=57.73 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=49.5
Q ss_pred cCeEEEEecCCCCCCceEEEEecC--CcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeE
Q psy3327 34 DDKCVAFNDINPEAPIHFLVIPRK--PIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLH 111 (125)
Q Consensus 34 ~~~~~~~~~~~p~~~gh~lIiPk~--H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH 111 (125)
+....++.+..|..+||+|+||+. |.... |+. +++..+..++...+. .+|++++|. ..+.-+++|+|
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~-------~~l~la~~~a~~~~~-p~frvgYNS-lGA~ASvNHLH 236 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDP-------DSFLLALYMAAEANN-PYFRVGYNS-LGAFATINHLH 236 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecH-------HHHHHHHHHHHhcCC-CcEEEEecC-CccccCcceee
Confidence 455688999999999999999765 44433 332 233334455554443 579999886 43556899999
Q ss_pred EEEec
Q psy3327 112 IHVMG 116 (125)
Q Consensus 112 ~HviP 116 (125)
+|..-
T Consensus 237 FQa~y 241 (403)
T PLN03103 237 FQAYY 241 (403)
T ss_pred eeecc
Confidence 99764
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Back Show alignment and domain information
Probab=97.49 E-value=0.00083 Score=51.16 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=66.9
Q ss_pred CCCCCCccccccc---ccc---CccEEEEcCeEEEEecCCC--------------CCCceEEEEecCCcCCCCCCChhhH
Q psy3327 11 APGGDTIFGRILR---KEI---PCNFIHEDDKCVAFNDINP--------------EAPIHFLVIPRKPIPSLSEAGDEDA 70 (125)
Q Consensus 11 ~~~~~C~fC~i~~---~e~---~~~ii~e~~~~~~~~~~~p--------------~~~gh~lIiPk~H~~~~~~L~~~e~ 70 (125)
..+..|+||.=-. .+. ....+++++.=.+-.|... +....++|-...|-.++.+|+.++
T Consensus 37 ~~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~- 115 (338)
T COG1085 37 DHDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDHSKTLPELPVEE- 115 (338)
T ss_pred ccCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcccCccccCCHHH-
Confidence 4578899998321 111 1245566655555444322 122335677888999999999887
Q ss_pred HHHHHHHHHHHHHHHHcCCC---CCeEEEEecCcCCCCccceeEEEEec
Q psy3327 71 EILGHLMVTASKLAKKQGLD---NGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 71 ~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
+.+++.+.+...+.++.. .-+.+..|.|..+|.|.+|-|..|+.
T Consensus 116 --~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 116 --IEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred --HHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 445565555666665422 23466789999999999999999864
>PLN02643 ADP-glucose phosphorylase
Back Show alignment and domain information
Probab=97.40 E-value=0.0023 Score=48.91 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=46.0
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCC--CC-eEEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLD--NG-YRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~--~~-~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-.-+|..++.+|+.+++. .++.+-+.-.+.++.. -. +.+.-|.|..+|.|..|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIG---EVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHH---HHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35678888999999999988744 4444333444444321 12 345678899999999999999875
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Back Show alignment and domain information
Probab=97.23 E-value=0.0028 Score=48.67 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=45.9
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCe-EEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-..+|..++.+|+.+++. .++.+-+.-.+.++..-.| .+.-|.|..+|.|..|-|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALR---EVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHH---HHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 45778899999999999998754 3444333334444321233 45678899999999999999874
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type
Back Show alignment and domain information
Probab=97.21 E-value=0.0031 Score=46.10 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=66.5
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCC---CCChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLS---EAGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~---~L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
..|+.-.-.+|. .|...|.....++++.|. ..+.|.|+||.+.++-+. -+++.....+..-...-.-+.++++.
T Consensus 39 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 116 (250)
T TIGR00672 39 EECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQ 116 (250)
T ss_pred hhcCCchhccCCCCCcceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCC
Confidence 457766544443 344566677889999886 778999999999987664 35555555666666544455566664
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|-|-.|+|+||=
T Consensus 117 pipd~~lsLaINS--~~gRSQnQLHIHIs 143 (250)
T TIGR00672 117 PIPDRAVSLAINS--RTGRSQNHFHIHIS 143 (250)
T ss_pred CCChhheeEEecC--CCCcccccceeeHh
Confidence 33 45566665 35788999999984
Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1
Back Show alignment and domain information
Probab=97.19 E-value=0.0039 Score=47.86 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=44.9
Q ss_pred ceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCe-EEEEecCcCCCCccceeEEEEec
Q psy3327 49 IHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 49 gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
..++|-.-+|-.++.+|+.+++.. ++.+-+.-.+.++..-.| .+.-|-|..+|.|..|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~---v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTE---IVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHH---HHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 457788889999999999987543 333333333333321233 44678899999999999999874
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Back Show alignment and domain information
Probab=97.10 E-value=0.005 Score=45.10 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=65.5
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
..|+.-.-.++. .|...|.....++++.| +..+.|.|+||.+.++-+.+ +++.....+..-...-.-+.++++.
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 117 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGK 117 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCC
Confidence 457766544443 34466667788888885 66788999999999876543 5555455666666644455566664
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|-|-.|||+||=
T Consensus 118 pipd~~lsLaINS--~~gRSQnQLHIHIs 144 (252)
T PRK05471 118 PIPDSAVSLAINS--RYGRTQDQLHIHIS 144 (252)
T ss_pred CCChhheEEEecC--CCCccccceeeehh
Confidence 33 45566665 35788999999984
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=97.02 E-value=0.0012 Score=47.93 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=50.7
Q ss_pred eEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEEEEe
Q psy3327 36 KCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 36 ~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
....+++.+|..+.|+|||.++--..-+.|+..+ +.. +-+++..+ +|. +.+|.|+.+|-|.+|=|+.++
T Consensus 93 th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D------f~t-a~~vL~~l---dgl-vFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 93 THKLLLNKFPVVDEHLLIVTREFEDQESALTLAD------FTT-AYAVLCGL---DGL-VFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred hHhhhhhcCCcccceeEEeehhhhhccccCCHHH------HHH-HHHHHhcc---cce-EEecCCCCcCcCCCccceeEe
Confidence 4567889999999999999987655444555443 222 22232222 443 568999999999999999999
Q ss_pred cC
Q psy3327 116 GG 117 (125)
Q Consensus 116 Pr 117 (125)
|-
T Consensus 162 pm 163 (298)
T COG4360 162 PM 163 (298)
T ss_pred ec
Confidence 85
>KOG2720|consensus
Back Show alignment and domain information
Probab=96.78 E-value=0.002 Score=49.05 Aligned_cols=73 Identities=27% Similarity=0.301 Sum_probs=44.2
Q ss_pred EcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCccceeEE
Q psy3327 33 EDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHI 112 (125)
Q Consensus 33 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~HlH~ 112 (125)
|+.. +|..+..|...||+||||+---..---++... + ..+-.+..... .+.|++++|.- .+.-+|.|+|+
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~~a------l-~lav~~m~~~d-d~~frlgyNSl-ga~AsVNHLHf 234 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITHKA------L-LLAVTMMAEAD-DPYFRLGYNSL-GAFASVNHLHF 234 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchhccCcceeeHHH------H-HHHHHHHHhcC-Cchhheecccc-hhhhhhhhhhh
Confidence 3444 66777889999999999986544333343322 1 11222222222 14677777752 24578999999
Q ss_pred EEe
Q psy3327 113 HVM 115 (125)
Q Consensus 113 Hvi 115 (125)
|..
T Consensus 235 ha~ 237 (431)
T KOG2720|consen 235 HAY 237 (431)
T ss_pred hhh
Confidence 964
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3
Back Show alignment and domain information
Probab=96.55 E-value=0.015 Score=41.96 Aligned_cols=84 Identities=19% Similarity=0.387 Sum_probs=46.7
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCCC---CCeEEEEecCc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGLD---NGYRLVVNNGR 101 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~g~ 101 (125)
...|-....++++.| +..+.|.|+||.+.++-+.+ +++.....++.-...-..+.++++.+ +.+.+.+|.-
T Consensus 26 C~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~- 102 (222)
T PF02611_consen 26 CAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ- 102 (222)
T ss_dssp SSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G-
T ss_pred CeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc-
Confidence 345555777888886 56689999999999876653 45555566666665444555666642 4667777753
Q ss_pred CCCCccceeEEEEe
Q psy3327 102 HGAQSVYHLHIHVM 115 (125)
Q Consensus 102 ~~~~~v~HlH~Hvi 115 (125)
.|-+-.|||+||=
T Consensus 103 -~gRsQdQLHIHis 115 (222)
T PF02611_consen 103 -YGRSQDQLHIHIS 115 (222)
T ss_dssp -GG-S--S--EEEE
T ss_pred -cCccccceEeEhh
Confidence 4778899999984
6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Back Show alignment and domain information
Probab=96.35 E-value=0.048 Score=39.03 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=60.2
Q ss_pred CCCccccccccc-cCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC
Q psy3327 14 GDTIFGRILRKE-IPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL 89 (125)
Q Consensus 14 ~~C~fC~i~~~e-~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~ 89 (125)
+.|.+-..-++. .|...|-+...++++.|.+ .|...|++|.-+++-+.+ ++.+....+....+.-.-+.++++.
T Consensus 40 e~C~p~~~~~~~paPCaeV~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~ 117 (252)
T COG2134 40 ERCLPNYQQNQNPAPCAEVKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGN 117 (252)
T ss_pred HHcCcchhccCCCCCceeecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 457766643332 3446778888888888854 355669999999876543 3444444555544433334455654
Q ss_pred --CC-CeEEEEecCcCCCCccceeEEEEe
Q psy3327 90 --DN-GYRLVVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 90 --~~-~~~~~~~~g~~~~~~v~HlH~Hvi 115 (125)
++ .+.+.+|. ..|.+-.|+|+||=
T Consensus 118 ~ipd~dvsLaINs--~~gRtQdqlHIHIS 144 (252)
T COG2134 118 PIPDSDVSLAINS--KNGRTQDQLHIHIS 144 (252)
T ss_pred CCCccceEEEecC--ccCccccceEEEEE
Confidence 32 44455553 35778899999984
>COG5075 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=96.09 E-value=0.016 Score=42.34 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=51.6
Q ss_pred cCccEEEEcCe----EEEEecC--CCC--CCceEE-EEecCCcCCCCCCChhhHHHHHHHHHHHHHHHH-HcCC-CCCeE
Q psy3327 26 IPCNFIHEDDK----CVAFNDI--NPE--APIHFL-VIPRKPIPSLSEAGDEDAEILGHLMVTASKLAK-KQGL-DNGYR 94 (125)
Q Consensus 26 ~~~~ii~e~~~----~~~~~~~--~p~--~~gh~l-IiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~-~~~~-~~~~~ 94 (125)
...+++||+.. |+++.|. .+. ..-|++ |+-+.-+.++.||...++..+..+-........ ..+. ++...
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~ 232 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELR 232 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeE
Confidence 44589999875 4557762 222 244555 445555899999998887655444331111111 1122 24555
Q ss_pred EEEecCcCCCCccceeEEEEec
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviP 116 (125)
+.++. .++-+|+|+||+-
T Consensus 233 mfvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 233 MFVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred EEEEe----ccceEEEEEEEEe
Confidence 66664 3578899999974
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
Back Show alignment and domain information
Probab=92.76 E-value=0.49 Score=33.00 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred eEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC---CCCeEEEEecCcCCCCccceeEEEEec
Q psy3327 50 HFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL---DNGYRLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 50 h~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.++|-.-+|-.++.+|+.++.. .++.+.+.-...+.. ..-..+.-|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~---~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIK---EILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHH---HHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHH---HHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 5677788888999999988744 344433333333322 122345678899999999999999875
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
>KOG2958|consensus
Back Show alignment and domain information
Probab=90.04 E-value=1.6 Score=32.95 Aligned_cols=106 Identities=14% Similarity=0.024 Sum_probs=61.6
Q ss_pred hhccCCCCCCccccc---cccc-c---CccEEEEcCeEEEEecCC-------------CCCCceEEEEecCCcCC--CCC
Q psy3327 7 AAQAAPGGDTIFGRI---LRKE-I---PCNFIHEDDKCVAFNDIN-------------PEAPIHFLVIPRKPIPS--LSE 64 (125)
Q Consensus 7 ~~~~~~~~~C~fC~i---~~~e-~---~~~ii~e~~~~~~~~~~~-------------p~~~gh~lIiPk~H~~~--~~~ 64 (125)
.+...++..|++|.= ..|. . ....|++++.-.+-.+.. -...|-+-||--....+ +.+
T Consensus 45 ~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~ 124 (354)
T KOG2958|consen 45 NTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPL 124 (354)
T ss_pred CCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeecceeEEEEeCCcccccccc
Confidence 334456788999972 1111 1 124566666544433310 01245555655555544 445
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCCCeEE---EEecCcCCCCccceeEEEEe
Q psy3327 65 AGDEDAEILGHLMVTASKLAKKQGLDNGYRL---VVNNGRHGAQSVYHLHIHVM 115 (125)
Q Consensus 65 L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~v~HlH~Hvi 115 (125)
++..+ +..++..=+++...++..+.|++ .-|-|...|+|.+|-|-.+.
T Consensus 125 m~~~~---i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~w 175 (354)
T KOG2958|consen 125 MDVVE---IRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQAW 175 (354)
T ss_pred CCHHH---HHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCccccee
Confidence 65554 66677766677777775455544 45678888999999997653
>PF14317 YcxB: YcxB-like protein
Back Show alignment and domain information
Probab=83.03 E-value=3.1 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=19.6
Q ss_pred cEEEEcCeEEEEecCCCCCCceEEEEecCCc
Q psy3327 29 NFIHEDDKCVAFNDINPEAPIHFLVIPRKPI 59 (125)
Q Consensus 29 ~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~ 59 (125)
.-+.|+++.+.+.- ..+..++|||+-.
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~f 49 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRAF 49 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHHC
Confidence 45677777777654 5678899999844
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 125
d1kpfa_ 111
d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1
8e-42 d1xqua_ 113
d.13.1.1 (A:) Putative hydrolase {Clostridium ther
2e-29 d1y23a_ 139
d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]
1e-24 d1emsa1 160
d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te
6e-22 d1fita_ 146
d.13.1.1 (A:) FHIT (fragile histidine triad protei
9e-20 d1guqa2 171
d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly
3e-17 d1vlra1 192
d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-
3e-15 d2oika1 139
d.13.1.1 (A:6-144) Histidine triad protein Mfla250
3e-11 d1z84a2 156
d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly
4e-11 d2pofa1 220
d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophospha
0.002
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 132 bits (332), Expect = 8e-42
Identities = 68/111 (61%), Positives = 86/111 (77%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
DTIFG+I+RKEIP I EDD+C+AF+DI+P+AP HFLVIP+K I +S A D+D +LG
Sbjct: 1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLG 60
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125
HLM+ K A GL+ GYR+VVN G G QSVYH+H+HV+GGRQ+ WPPG
Sbjct: 61 HLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]
Score = 100 bits (250), Expect = 2e-29
Identities = 40/107 (37%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ +F +I+++E+P +ED++ +A DINP AP+H L+IP++ I ++ E + +A+IL
Sbjct: 3 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILI 62
Query: 75 HLMVTASKLAKKQGL-DNGYRLVVNNGRHGAQSVYHLHIHVMGGRQL 120
+ A+K+A+ G+ + GYRL+ N G Q+V+HLH H++GG +
Sbjct: 63 DIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
Score = 89.2 bits (220), Expect = 1e-24
Identities = 32/101 (31%), Positives = 55/101 (54%)
Query: 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILG 74
+ IF +I+ +IP ++ED+ +AF DI+ H LVIP+ I ++ E DE A+
Sbjct: 2 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 61
Query: 75 HLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
H + ++ + + G + NNG QSV+H H+H++
Sbjct: 62 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 102
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 83.0 bits (204), Expect = 6e-22
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 15 DTIFGRILRKEIPCNFI-HEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL 73
+T + R IP + I + F ++ P H LV P++ +P L++ D + L
Sbjct: 15 ETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADL 74
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119
+ + +K + V +G+ Q+V H+HIH++ R
Sbjct: 75 FIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 120
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 9e-20
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 18 FGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLM 77
FG+ L K P + + A + P P H LV P +P+ + ++ L
Sbjct: 4 FGQHLIK--PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 61
Query: 78 VTASKLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
+ +K + +G Q+V H+H+HV+
Sbjct: 62 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 99
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Score = 71.2 bits (174), Expect = 3e-17
Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 14 GDTIFGRILRKEIPCN--FIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAE 71
+ +++E+ + E + +A P L++P+ + +++ D
Sbjct: 17 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRS 76
Query: 72 ILGHLMVTASK-LAKKQGLDNGYRLVVNNGRHGA--QSVYHLHIHVMGGRQLRWP 123
L + + Y + + + LH H LR
Sbjct: 77 DLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY-PPLLRSA 130
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (161), Expect = 3e-15
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 17 IFGRILRKEIPCNFIHEDDKC----VAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGD 67
++ + +K + E+ V D+ ++ + I + I SL +
Sbjct: 30 VYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTP 89
Query: 68 EDAEILGHLMVTASK-LAKKQGLD-NGYRLVVNNGRHGAQSVYHLHIHVM 115
E +L +++ + + K+ + + R+ + H S YHLH+H
Sbjct: 90 EHLPLLRNILREGQEAILKRYQVTGDRLRVYL----HYLPSYYHLHVHFT 135
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
Score = 54.9 bits (131), Expect = 3e-11
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 24 KEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKL 83
+ +D C + N + P VI + + +S+ + + L ++ +
Sbjct: 10 TTAGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEA 69
Query: 84 AKKQGLDNGYRLVVNNGRHGAQSVYHLHIHVM 115
++ R N H+H HV+
Sbjct: 70 VRE-----VMRPDKINLASLGNMTPHVHWHVI 96
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 54.7 bits (131), Expect = 4e-11
Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEIL 73
G K I E V+ P +IP+ D A L
Sbjct: 19 GKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDL 75
Query: 74 GHLMVTASKLAKKQGLDNGYRLVVN----NGRHGAQSVYHLHIHVMGGRQLRWPPG 125
G L+ + KQ D Y +++ H + ++ QL G
Sbjct: 76 GGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIV--PQLSGVGG 129
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Length = 220
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: CDH-like
domain: CDP-diacylglycerol pyrophosphatase CDH
species: Escherichia coli [TaxId: 562]
Score = 34.1 bits (78), Expect = 0.002
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPI-----PSLSEAGDEDAEILGHLMVTAS 81
PC + + V D+N P+ +L++P I P L++ + L
Sbjct: 24 PCAEVKPNAGYVVLKDLN--GPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFM 81
Query: 82 KLAKKQGLDNGYRLVVNNGRHGAQSVYHLHIHV 114
Q + + + N R G ++ H HIH+
Sbjct: 82 SKKYGQPVPDRAVSLAINSRTG-RTQNHFHIHI 113
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 125
d1kpfa_ 111
Protein kinase C inhibitor-1, PKCI-1 {Human (Homo
100.0 d1xqua_ 113
Putative hydrolase {Clostridium thermocellum [TaxI
100.0 d1y23a_ 139
Hit {Bacillus subtilis [TaxId: 1423]}
100.0 d1emsa1 160
NIT-FHIT fusion protein, C-terminal domain {Nemato
99.98 d2oika1 139
Histidine triad protein Mfla2506 {Methylobacillus
99.96 d1fita_ 146
FHIT (fragile histidine triad protein) {Human (Hom
99.96 d1guqa2 171
Galactose-1-phosphate uridylyltransferase {Escheri
99.95 d1z84a2 156
Galactose-1-phosphate uridylyltransferase {Thale c
99.94 d1vlra1 192
mRNA decapping enzyme DcpS C-terminal domain {Mous
99.64 d1z84a1 173
Galactose-1-phosphate uridylyltransferase {Thale c
98.26 d1guqa1 176
Galactose-1-phosphate uridylyltransferase {Escheri
98.03 d2pofa1 220
CDP-diacylglycerol pyrophosphatase CDH {Escherichi
96.85
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-43 Score=225.33 Aligned_cols=111 Identities=61% Similarity=1.169 Sum_probs=107.1
Q ss_pred CCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeE
Q psy3327 15 DTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYR 94 (125)
Q Consensus 15 ~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (125)
+|+||+|++||.++.+|||||.++||.|.+|.++||+|||||+|++++.+|++++..++..+..++++++++.+..+|||
T Consensus 1 dCiFc~I~~~e~p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (111)
T d1kpfa_ 1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYR 80 (111)
T ss_dssp CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred CCcccccccCCCCccEEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 69999999999999999999999999999999999999999999999999999998889999999999999987778999
Q ss_pred EEEecCcCCCCccceeEEEEecCCCCCCCCC
Q psy3327 95 LVVNNGRHGAQSVYHLHIHVMGGRQLRWPPG 125 (125)
Q Consensus 95 ~~~~~g~~~~~~v~HlH~HviPr~~~~w~~~ 125 (125)
+.+|+|..+||+|+|+|+|||||++++||||
T Consensus 81 i~~n~g~~agq~V~HlH~Hiip~~~l~wppg 111 (111)
T d1kpfa_ 81 MVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111 (111)
T ss_dssp EECCCHHHHTCCSSSCCEEEEESSCCCSSCC
T ss_pred EEEeCCccCCcccceeEEEEeCCCcCCCCcC
Confidence 9999999999999999999999999999998
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=2.5e-37 Score=198.76 Aligned_cols=109 Identities=37% Similarity=0.755 Sum_probs=102.2
Q ss_pred CCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCC-CC
Q psy3327 13 GGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGL-DN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~-~~ 91 (125)
+++|+||+|++|+.++.+||||+.++||.|.+|.++||+||+||+|+.++.+|++++.+++..++..+++++++++. .+
T Consensus 1 m~~CiFC~I~~~e~p~~ivyede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T d1xqua_ 1 LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEK 80 (113)
T ss_dssp CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCCCcCCcccCCCCcccEEEeCCCEEEEECCCCCCCceEEEeecccccchhhccchhHHHHHHHHHHHHHHHHhhccCCC
Confidence 46799999999999999999999999999999999999999999999999999999888889999989999988765 47
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQLR 121 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~~~ 121 (125)
|||+.+|+|+.+||+++|+|+|||||++++
T Consensus 81 g~~~~~~~g~~agq~v~HlH~Hvip~~~~~ 110 (113)
T d1xqua_ 81 GYRLITNCGVAAGQTVFHLHYHLLGGVDMG 110 (113)
T ss_dssp CEEEECCCSTTTTCCSCSCCEEEEESSCCC
T ss_pred ceEEEEeCccccccccCeeEEEEeCccccC
Confidence 999999999999999999999999999876
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.2e-36 Score=200.37 Aligned_cols=105 Identities=30% Similarity=0.452 Sum_probs=92.0
Q ss_pred CCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHH-HHHHcCCCCC
Q psy3327 14 GDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASK-LAKKQGLDNG 92 (125)
Q Consensus 14 ~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~-~~~~~~~~~~ 92 (125)
++|+||+|++|++++.+||||++++||.|.+|.++||+||+||+|+.++.+|+++++..+.+++..+.+ +.+.++ ++|
T Consensus 1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~-~~g 79 (139)
T d1y23a_ 1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFE-PIG 79 (139)
T ss_dssp CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHC-CSE
T ss_pred CcCccCccccCCCCccEEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcc-cCC
Confidence 479999999999999999999999999999999999999999999999999999987666666553333 333344 579
Q ss_pred eEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 93 YRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 93 ~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
||+++|+|+.+||+|+|+|+|||||+.
T Consensus 80 ~~i~~n~g~~agq~v~H~H~HviPR~~ 106 (139)
T d1y23a_ 80 LNTLNNNGEKAGQSVFHYHMHIIPRYG 106 (139)
T ss_dssp EEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred cEEEeCCCccccEecCEEEEEEEcccc
Confidence 999999999999999999999999964
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=1.6e-32 Score=185.72 Aligned_cols=107 Identities=22% Similarity=0.363 Sum_probs=92.1
Q ss_pred CCCCccccccccccCc-cEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 13 GGDTIFGRILRKEIPC-NFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 13 ~~~C~fC~i~~~e~~~-~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
+.+|.||++.++++|+ .|||||++++||.|.+|.++||+|||||+|+.++.+|+++|...+..++..+.+.++....++
T Consensus 13 ~~~~~~~~~~~~eiP~~~ii~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~ 92 (160)
T d1emsa1 13 SSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVT 92 (160)
T ss_dssp CCCSSCCEETTEECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccccCCceEcCCcCCcceEEEeCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccc
Confidence 4559999999999998 599999999999999999999999999999999999999987666666654434444433358
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQ 119 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~ 119 (125)
+||+++|+|+.+||+|+|+|+|||||+.
T Consensus 93 g~ni~~n~G~~aGq~V~HlHiHIIPR~~ 120 (160)
T d1emsa1 93 STTICVQDGKDAGQTVPHVHIHILPRRA 120 (160)
T ss_dssp EEEEECCCSGGGTCCSSSCCEEEEEECS
T ss_pred eEEEecccCCCCCeEEeEEEEEEECCcC
Confidence 9999999999999999999999999975
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
Probab=99.96 E-value=4.7e-29 Score=164.96 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDN 91 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~ 91 (125)
-+.+|.||++.++ .+||||+.++|+++.+|.++||+||+||+|+.++.+|+++|+..+..++..+.+.+++....+
T Consensus 2 ~~~~C~fC~~~~~----~ii~e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~ 77 (139)
T d2oika1 2 FHKNCELCTTAGG----EILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPD 77 (139)
T ss_dssp CCTTCHHHHSCCS----EEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCcCccccCcCC----eEEEECCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHHHHHHHhHHHHhhcchh
Confidence 4678999997554 689999999999999999999999999999999999999998777777765555554433346
Q ss_pred CeEEEEecCcCCCCccceeEEEEecCCC--CCCC
Q psy3327 92 GYRLVVNNGRHGAQSVYHLHIHVMGGRQ--LRWP 123 (125)
Q Consensus 92 ~~~~~~~~g~~~~~~v~HlH~HviPr~~--~~w~ 123 (125)
++|+.. .||+++|+|+|||||++ ..||
T Consensus 78 ~~n~~~-----~g~~v~HlH~HviPR~~~d~~~~ 106 (139)
T d2oika1 78 KINLAS-----LGNMTPHVHWHVIPRFKRDRHFP 106 (139)
T ss_dssp EEEEEE-----CCSSSCSCEEEEEEECTTSSSTT
T ss_pred hhHHHH-----hcCCCCeEEEEEecccCCCCCCC
Confidence 777653 57999999999999976 3554
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.7e-29 Score=165.23 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=82.7
Q ss_pred CccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCcCCCCc
Q psy3327 27 PCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQGLDNGYRLVVNNGRHGAQS 106 (125)
Q Consensus 27 ~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 106 (125)
|+.+||||+.++||.|.+|.++||+||+||+|+.++.+|+++|...|.+++..+.+.+++...+++||+++|+|+.+||+
T Consensus 11 p~~ii~e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~ 90 (146)
T d1fita_ 11 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT 90 (146)
T ss_dssp GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred cceEEEECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCCC
Confidence 56899999999999999999999999999999999999999998888887775555444443368999999999999999
Q ss_pred cceeEEEEecCCCC
Q psy3327 107 VYHLHIHVMGGRQL 120 (125)
Q Consensus 107 v~HlH~HviPr~~~ 120 (125)
++|+|+|||||...
T Consensus 91 v~HlH~HiiPR~~g 104 (146)
T d1fita_ 91 VKHVHVHVLPRKAG 104 (146)
T ss_dssp SSSCCEEEEEECTT
T ss_pred CCEEEEEEecCcCC
Confidence 99999999999753
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3e-29 Score=170.84 Aligned_cols=106 Identities=11% Similarity=0.175 Sum_probs=90.3
Q ss_pred CCCCCccccccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHHHHc-C
Q psy3327 12 PGGDTIFGRILRKEIP--CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLAKKQ-G 88 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~--~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~~~~-~ 88 (125)
..+.|+||++++.|.+ .++||||++|+||.|.+|.+|||+|||||+|+.++.+|++++...|+.++..+.+.++++ +
T Consensus 15 ~~~~clfcdii~~E~~~~~RiV~e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~ 94 (171)
T d1guqa2 15 EQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQ 94 (171)
T ss_dssp HHSSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCcHHHHHHhhccCCCeEEEECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999998854 489999999999999999999999999999999999999999888888877555555443 4
Q ss_pred CCCCeEEEEecCcCCC--CccceeEEEEecC
Q psy3327 89 LDNGYRLVVNNGRHGA--QSVYHLHIHVMGG 117 (125)
Q Consensus 89 ~~~~~~~~~~~g~~~~--~~v~HlH~HviPr 117 (125)
.+.+||+.++.++.++ +.++|+|+|++||
T Consensus 95 ~~~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr 125 (171)
T d1guqa2 95 CSFPYSMGWHGAPFNGEENQHWQLHAHFYPP 125 (171)
T ss_dssp SCCCEEEEEECCCSSSSCCTTCCCEEEEECC
T ss_pred CCcchhhhhhcCccccCCCceeEEEEEEccC
Confidence 4457999999988654 6678999999997
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=4.7e-27 Score=157.95 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=86.4
Q ss_pred CCCCCccccccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCCCChhhHHHHHHHHHHHHHHH-HHcCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSEAGDEDAEILGHLMVTASKLA-KKQGLD 90 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~l~~~~~~~~-~~~~~~ 90 (125)
..+.|+||++.+++ ++||||++|+|+.|.+|.+|||+||+||+|+.++.+|++++...|++++..+.+.+ +.++ .
T Consensus 17 ~~~~Cifc~i~~~~---riV~e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~-~ 92 (156)
T d1z84a2 17 ETGKCCLCEAKSKH---FVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLN-D 92 (156)
T ss_dssp HHSSCTTTTHHHHS---EEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hcCCCceEEecCCC---EEEEECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 46789999988775 79999999999999999999999999999999999999999887777777333333 3345 4
Q ss_pred CCeEEEEecCcCCC----CccceeEEEEecCC
Q psy3327 91 NGYRLVVNNGRHGA----QSVYHLHIHVMGGR 118 (125)
Q Consensus 91 ~~~~~~~~~g~~~~----~~v~HlH~HviPr~ 118 (125)
.+||+++|.++..+ +.++|+|+|++||.
T Consensus 93 ~~~n~~~~~~p~~~~~~~~~~~H~hi~~~Pr~ 124 (156)
T d1z84a2 93 PPYNYMIHTSPLKVTESQLPYTHWFLQIVPQL 124 (156)
T ss_dssp CCEEEEEECCCTTCCGGGGGGCCCEEEEEECC
T ss_pred CcccHhhhcCCCCCcccCceeEEEEEEecCCC
Confidence 69999999877543 56789999999985
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=8.7e-16 Score=104.91 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=78.2
Q ss_pred cccccc-cCccEEEEcCe----EEEEecCC----CCCCceEEEEecCC-cCCCCCCChhhHHHHHHHHHHHHHHHHH-cC
Q psy3327 20 RILRKE-IPCNFIHEDDK----CVAFNDIN----PEAPIHFLVIPRKP-IPSLSEAGDEDAEILGHLMVTASKLAKK-QG 88 (125)
Q Consensus 20 ~i~~~e-~~~~ii~e~~~----~~~~~~~~----p~~~gh~lIiPk~H-~~~~~~L~~~e~~~l~~l~~~~~~~~~~-~~ 88 (125)
.|+.+. .+.+|+|+|+. |+++.|.. |...-|+|+||+|| +.|+.+|++++.++|..|...+++++.. .+
T Consensus 32 nIL~~~~E~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~~~~g 111 (192)
T d1vlra1 32 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ 111 (192)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCccceeEEeCCCCCCCEEEecccccCCCcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHhC
Confidence 344543 45689999954 99999986 89999999999988 9999999999999999999999886655 56
Q ss_pred C-CCCeEEEEecCcCCCCccceeEEEEecCC
Q psy3327 89 L-DNGYRLVVNNGRHGAQSVYHLHIHVMGGR 118 (125)
Q Consensus 89 ~-~~~~~~~~~~g~~~~~~v~HlH~HviPr~ 118 (125)
. .++|+++++.+ +|++|+|+||+...
T Consensus 112 i~~~~~Rig~H~~----PSv~HLHlHvi~~~ 138 (192)
T d1vlra1 112 VTGDRLRVYLHYL----PSYYHLHVHFTALG 138 (192)
T ss_dssp CCGGGEEEEEESS----CSSSSCEEEEEETT
T ss_pred CChhheEEEEECC----CCEeeeEEEEEecc
Confidence 5 47899999865 58999999999654
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.26 E-value=7.2e-06 Score=54.37 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCCCCccccccccccCccEEEE---cC---eEEEEecCCCCC---------------------Cce--EEEEecCCcCCC
Q psy3327 12 PGGDTIFGRILRKEIPCNFIHE---DD---KCVAFNDINPEA---------------------PIH--FLVIPRKPIPSL 62 (125)
Q Consensus 12 ~~~~C~fC~i~~~e~~~~ii~e---~~---~~~~~~~~~p~~---------------------~gh--~lIiPk~H~~~~ 62 (125)
....|+||.=.....+ ..+++ ++ .+.+|.+.+|.. .|. ++|...+|-.++
T Consensus 37 ~~~~CPfCpGne~~~~-~~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~~l 115 (173)
T d1z84a1 37 KPSSCPFCIGREQECA-PELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQL 115 (173)
T ss_dssp --CCCTTSTTCGGGSS-CEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCG
T ss_pred CcccCCCCCCCcccCC-CcceeccccCCCceEEEeCCCCcccccccccccccCcCcceeecccccceeeEEeCccccCCh
Confidence 3567999973222222 22232 11 457888888853 122 667789999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCC--Ce-EEEEecCcCCCCccceeEEEEec
Q psy3327 63 SEAGDEDAEILGHLMVTASKLAKKQGLDN--GY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 63 ~~L~~~e~~~l~~l~~~~~~~~~~~~~~~--~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
.+++.+++ .+++.+.++-.+.+.... .| .+.-|.|..+|.|..|-|.+|+.
T Consensus 116 ~~~~~e~i---~~v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a 169 (173)
T d1z84a1 116 SDIDPVGI---GDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 169 (173)
T ss_dssp GGSCHHHH---HHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred hhCCHHHH---HHHHHHHHHHHHHHHcCCCceEEEEEeecCccCccCCCCCCeeeee
Confidence 99998874 455554445555554322 23 44678899999999999999985
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=1.2e-05 Score=53.37 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=43.3
Q ss_pred EEEEecCCcCCCCCCChhhHHHHHHHHH-HHHHHHHHcCCCCCe-EEEEecCcCCCCccceeEEEEec
Q psy3327 51 FLVIPRKPIPSLSEAGDEDAEILGHLMV-TASKLAKKQGLDNGY-RLVVNNGRHGAQSVYHLHIHVMG 116 (125)
Q Consensus 51 ~lIiPk~H~~~~~~L~~~e~~~l~~l~~-~~~~~~~~~~~~~~~-~~~~~~g~~~~~~v~HlH~HviP 116 (125)
++|...+|-.++.+|+.+++..+.++.. ..+++.+. ..| .+.-|.|..+|.|..|-|..|+.
T Consensus 107 VIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~~l~~~----i~yv~iFkN~G~~aGaSl~HPH~QI~a 170 (176)
T d1guqa1 107 VICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKT----YPWVQVFENKGAAMGCSNPHPGGQIWA 170 (176)
T ss_dssp EEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHH----CSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred EEEECcccccChhhCCHHHHHHHHHHHHHHHHHhcCC----CCEEEEEeecCccccCCCCCCCeeeee
Confidence 4555999999999999988654433332 22222222 233 45678899999999999999975
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: CDH-like
domain: CDP-diacylglycerol pyrophosphatase CDH
species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00085 Score=45.52 Aligned_cols=84 Identities=19% Similarity=0.372 Sum_probs=56.5
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCcCCCCC---CChhhHHHHHHHHHHHHHHHHHcCC--C-CCeEEEEecCc
Q psy3327 28 CNFIHEDDKCVAFNDINPEAPIHFLVIPRKPIPSLSE---AGDEDAEILGHLMVTASKLAKKQGL--D-NGYRLVVNNGR 101 (125)
Q Consensus 28 ~~ii~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~---L~~~e~~~l~~l~~~~~~~~~~~~~--~-~~~~~~~~~g~ 101 (125)
...|-++..++++.| +..+.|.|+||...++-+.+ +++.....+..-...-.-+.++++. + +.+.+.+|.-
T Consensus 25 C~~Vd~~~gyvvlKD--~~G~~qyLliPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~- 101 (220)
T d2pofa1 25 CAEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR- 101 (220)
T ss_dssp SSEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG-
T ss_pred CeeEecCCCEEEEeC--CCCCceEEEeecccccCccChhhcCCCCccHHHHHHHHhHHHHHHhCCCCCchheEEEecCC-
Confidence 355666777777776 56788899999999887764 4555444565555533344555663 3 3566677753
Q ss_pred CCCCccceeEEEEe
Q psy3327 102 HGAQSVYHLHIHVM 115 (125)
Q Consensus 102 ~~~~~v~HlH~Hvi 115 (125)
.|-|-.|||+||=
T Consensus 102 -~gRSQdQLHIHI~ 114 (220)
T d2pofa1 102 -TGRTQNHFHIHIS 114 (220)
T ss_dssp -GGCSCCSCCEEEE
T ss_pred -CCcCccceeeehh
Confidence 4778899999984
